FFCP PHASE1:Hg19::chr11:72433293..72433345,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:72433293..72433345,- to FFCP PHASE1:Hg19::chr11:72433293..72433345,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=116985 | |EntrezGene=116985 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16925 | |HGNC=16925 | ||
|TSSclassifier=strong | |||
|UniProt=B2RTS2,Q96P48 | |UniProt=B2RTS2,Q96P48 | ||
|association_with_transcript=57bp_to_ENST00000334211,NM_001135190,NM_015242,uc001oss.2,uc009yth.2,uc010rre.1_5end | |||
|cluster_id=chr11:72433293..72433345,- | |||
|coexpression_cluster_id=C294 | |||
|description=CAGE_peak_3_at_ARAP1_5end | |||
|id=chr11:72433293..72433345,- | |||
|ontology_enrichment_celltype=CL:0000766!6.66e-25!76;CL:0002057!1.62e-23!42;CL:0002194!3.10e-23!63;CL:0000576!3.10e-23!63;CL:0000040!3.10e-23!63;CL:0000559!3.10e-23!63;CL:0002009!5.31e-23!65;CL:0000738!5.32e-22!140;CL:0000557!9.09e-21!71;CL:0002087!2.00e-20!119;CL:0000860!3.58e-19!45;CL:0000037!5.37e-19!172;CL:0000566!5.37e-19!172;CL:0000763!7.54e-19!112;CL:0000049!7.54e-19!112;CL:0000839!7.78e-19!70;CL:0000988!2.60e-18!182;CL:0002032!2.90e-18!165;CL:0000837!2.90e-18!165;CL:0002031!3.92e-16!124;CL:0002393!2.54e-07!9;CL:0002397!2.54e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000473;5.22e-17;39!CL:0000234;5.22e-17;39!CL:0000860;3.24e-16;33!CL:0002057;3.24e-16;33!CL:0000576;1.49e-15;48!CL:0000766;1.81e-12;69!CL:0000763;1.13e-07;100!CL:0002087;2.08e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.04e-28,72;CL:0000473,1.53e-27,48;CL:0000234,1.53e-27,48;CL:0002194,4.56e-27,59;CL:0000576,4.56e-27,59;CL:0000040,4.56e-27,59;CL:0000559,4.56e-27,59;CL:0002009,1.01e-26,61;CL:0000738,4.01e-24,136;CL:0000557,5.16e-24,67;CL:0000860,1.53e-23,42;CL:0002057,1.53e-23,42;CL:0002087,1.15e-22,115;CL:0000839,8.25e-22,66;CL:0000763,5.19e-21,108;CL:0000049,5.19e-21,108;CL:0000037,1.21e-20,168;CL:0002032,6.54e-20,161;CL:0000837,6.54e-20,161;CL:0000988,7.69e-20,177;CL:0002031,6.13e-18,120;CL:0002393,2.51e-07,9;CL:0002397,2.51e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;4.28e-17;42!CL:0000049;1.11e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!3.99e-26!112;UBERON:0002390!7.63e-25!102;UBERON:0003061!7.63e-25!102;UBERON:0003081!1.03e-18!216;UBERON:0002405!1.72e-18!115;UBERON:0002371!1.02e-17!80;UBERON:0007023!3.75e-15!115;UBERON:0001474!1.73e-14!86;UBERON:0004765!1.53e-09!101;UBERON:0001434!1.53e-09!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,6.67e-29,108;UBERON:0002390,1.06e-27,98;UBERON:0003061,1.06e-27,98;UBERON:0002405,2.45e-23,93;UBERON:0003081,2.05e-22,203;UBERON:0002371,2.17e-20,76;UBERON:0001474,1.03e-16,82;UBERON:0007023,5.65e-15,114;UBERON:0004765,1.35e-13,90;UBERON:0001434,1.79e-10,100;UBERON:0000926,1.63e-07,315;UBERON:0004120,1.63e-07,315;UBERON:0006603,1.63e-07,315 | |||
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| ||
|short_description=p3@ARAP1 | |||
}} | }} |
Latest revision as of 01:33, 20 September 2015
Short description: | p3@ARAP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ARAP1_5end |
Coexpression cluster: | C294_CD14_Macrophage_Monocytederived_CD14CD16_Neutrophils_Basophils_Peripheral |
Association with transcript: | 57bp_to_ENST00000334211, NM_001135190, NM_015242, uc001oss.2, uc009yth.2, uc010rre.1_5end |
EntrezGene: | ARAP1 |
HGNC: | 16925 |
UniProt: | B2RTS2Q96P48 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.04e-28 | 72 |
defensive cell | 1.53e-27 | 48 |
phagocyte | 1.53e-27 | 48 |
monopoietic cell | 4.56e-27 | 59 |
monocyte | 4.56e-27 | 59 |
monoblast | 4.56e-27 | 59 |
promonocyte | 4.56e-27 | 59 |
macrophage dendritic cell progenitor | 1.01e-26 | 61 |
leukocyte | 4.01e-24 | 136 |
granulocyte monocyte progenitor cell | 5.16e-24 | 67 |
classical monocyte | 1.53e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.53e-23 | 42 |
nongranular leukocyte | 1.15e-22 | 115 |
myeloid lineage restricted progenitor cell | 8.25e-22 | 66 |
myeloid cell | 5.19e-21 | 108 |
common myeloid progenitor | 5.19e-21 | 108 |
hematopoietic stem cell | 1.21e-20 | 168 |
hematopoietic oligopotent progenitor cell | 6.54e-20 | 161 |
hematopoietic multipotent progenitor cell | 6.54e-20 | 161 |
hematopoietic cell | 7.69e-20 | 177 |
hematopoietic lineage restricted progenitor cell | 6.13e-18 | 120 |
intermediate monocyte | 2.51e-07 | 9 |
CD14-positive, CD16-positive monocyte | 2.51e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 6.67e-29 | 108 |
hematopoietic system | 1.06e-27 | 98 |
blood island | 1.06e-27 | 98 |
immune system | 2.45e-23 | 93 |
lateral plate mesoderm | 2.05e-22 | 203 |
bone marrow | 2.17e-20 | 76 |
bone element | 1.03e-16 | 82 |
adult organism | 5.65e-15 | 114 |
skeletal element | 1.35e-13 | 90 |
skeletal system | 1.79e-10 | 100 |
mesoderm | 1.63e-07 | 315 |
mesoderm-derived structure | 1.63e-07 | 315 |
presumptive mesoderm | 1.63e-07 | 315 |