FFCP PHASE1:Hg19::chr12:7068692..7068716,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5777 | |EntrezGene=5777 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9658 | |HGNC=9658 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-22bp_to_ENST00000537533_5end | |association_with_transcript=-22bp_to_ENST00000537533_5end | ||
|cluster_id=chr12:7068692..7068716,+ | |||
|coexpression_cluster_id=C7 | |coexpression_cluster_id=C7 | ||
|description=CAGE_peak_7_at_PTPN6_5end | |description=CAGE_peak_7_at_PTPN6_5end | ||
|id=chr12:7068692..7068716,+ | |id=chr12:7068692..7068716,+ | ||
|ontology_enrichment_celltype=CL:0000557!1.92e-48!71;CL:0000766!6.16e-48!76;CL:0002057!1.38e-46!42;CL:0000763!8.20e-46!112;CL:0000049!8.20e-46!112;CL:0000839!6.42e-45!70;CL:0002009!1.67e-43!65;CL:0000037!5.51e-43!172;CL:0000566!5.51e-43!172;CL:0000860!1.44e-42!45;CL:0000738!1.31e-41!140;CL:0002032!1.39e-41!165;CL:0000837!1.39e-41!165;CL:0002194!6.47e-41!63;CL:0000576!6.47e-41!63;CL:0000040!6.47e-41!63;CL:0000559!6.47e-41!63;CL:0000988!1.79e-40!182;CL:0002031!2.29e-37!124;CL:0002087!2.41e-32!119;CL:0000134!2.42e-10!358;CL:0002320!3.24e-10!365;CL:0000840!5.32e-09!5;CL:0001029!5.32e-09!5;CL:0000451!7.16e-08!10;CL:0000219!1.30e-07!390;CL:0002393!1.42e-07!9;CL:0002397!1.42e-07!9;CL:0002274!1.99e-07!5;CL:0000457!1.99e-07!5;CL:0002191!1.99e-07!5;CL:0000097!1.99e-07!5;CL:0000831!1.99e-07!5;CL:0002028!1.99e-07!5 | |ontology_enrichment_celltype=CL:0000557!1.92e-48!71;CL:0000766!6.16e-48!76;CL:0002057!1.38e-46!42;CL:0000763!8.20e-46!112;CL:0000049!8.20e-46!112;CL:0000839!6.42e-45!70;CL:0002009!1.67e-43!65;CL:0000037!5.51e-43!172;CL:0000566!5.51e-43!172;CL:0000860!1.44e-42!45;CL:0000738!1.31e-41!140;CL:0002032!1.39e-41!165;CL:0000837!1.39e-41!165;CL:0002194!6.47e-41!63;CL:0000576!6.47e-41!63;CL:0000040!6.47e-41!63;CL:0000559!6.47e-41!63;CL:0000988!1.79e-40!182;CL:0002031!2.29e-37!124;CL:0002087!2.41e-32!119;CL:0000134!2.42e-10!358;CL:0002320!3.24e-10!365;CL:0000840!5.32e-09!5;CL:0001029!5.32e-09!5;CL:0000451!7.16e-08!10;CL:0000219!1.30e-07!390;CL:0002393!1.42e-07!9;CL:0002397!1.42e-07!9;CL:0002274!1.99e-07!5;CL:0000457!1.99e-07!5;CL:0002191!1.99e-07!5;CL:0000097!1.99e-07!5;CL:0000831!1.99e-07!5;CL:0002028!1.99e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0000860;4.34e-89;33!CL:0002057;4.34e-89;33!CL:0000473;4.80e-64;39!CL:0000234;4.80e-64;39!CL:0000576;2.66e-41;48!CL:0000766;8.05e-26;69!CL:0002087;3.87e-15;104!CL:0000763;1.29e-12;100!CL:0000738;1.74e-09;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.72e-74,42;CL:0002057,1.72e-74,42;CL:0000473,1.66e-64,48;CL:0000234,1.66e-64,48;CL:0002009,4.43e-57,61;CL:0000557,1.23e-55,67;CL:0002194,9.35e-55,59;CL:0000576,9.35e-55,59;CL:0000040,9.35e-55,59;CL:0000559,9.35e-55,59;CL:0000839,1.89e-52,66;CL:0000766,1.14e-47,72;CL:0002031,1.58e-41,120;CL:0002087,5.07e-38,115;CL:0000738,6.29e-36,136;CL:0000763,3.64e-35,108;CL:0000049,3.64e-35,108;CL:0002032,1.57e-31,161;CL:0000837,1.57e-31,161;CL:0000037,5.94e-30,168;CL:0000988,4.17e-28,177;CL:0000134,9.39e-11,354;CL:0002320,2.05e-10,361;CL:0000219,3.23e-09,386;CL:0000048,9.42e-08,427;CL:0000723,1.50e-07,433;CL:0000034,2.74e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;1.44e-58;42!CL:0000049;1.39e-12;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:630;6.99e-07;1!DOID:0050177;6.99e-07;1!DOID:0050427;6.99e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:630,7.19e-07,1;DOID:0050177,7.19e-07,1;DOID:0050427,7.19e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002371!4.40e-43!80;UBERON:0002390!3.01e-39!102;UBERON:0003061!3.01e-39!102;UBERON:0001474!7.57e-39!86;UBERON:0002193!2.01e-35!112;UBERON:0002405!5.24e-31!115;UBERON:0004765!1.71e-30!101;UBERON:0001434!1.71e-30!101;UBERON:0002204!2.18e-13!167;UBERON:0003081!1.34e-11!216;UBERON:0002384!7.90e-10!375 | |ontology_enrichment_uberon=UBERON:0002371!4.40e-43!80;UBERON:0002390!3.01e-39!102;UBERON:0003061!3.01e-39!102;UBERON:0001474!7.57e-39!86;UBERON:0002193!2.01e-35!112;UBERON:0002405!5.24e-31!115;UBERON:0004765!1.71e-30!101;UBERON:0001434!1.71e-30!101;UBERON:0002204!2.18e-13!167;UBERON:0003081!1.34e-11!216;UBERON:0002384!7.90e-10!375 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.45e-52,76;UBERON:0001474,5.53e-48,82;UBERON:0002390,1.58e-45,98;UBERON:0003061,1.58e-45,98;UBERON:0002405,6.12e-45,93;UBERON:0004765,3.08e-43,90;UBERON:0002193,8.87e-41,108;UBERON:0001434,2.31e-38,100;UBERON:0002204,1.20e-20,167;UBERON:0003081,7.48e-19,203;UBERON:0002384,5.96e-10,371;UBERON:0000926,6.60e-10,315;UBERON:0004120,6.60e-10,315;UBERON:0006603,6.60e-10,315 | |||
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|short_description=p7@PTPN6 | |short_description=p7@PTPN6 | ||
}} | }} |
Latest revision as of 15:19, 24 September 2015
Short description: | p7@PTPN6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_PTPN6_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | -22bp_to_ENST00000537533_5end |
EntrezGene: | PTPN6 |
HGNC: | 9658 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.72e-74 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.72e-74 | 42 |
defensive cell | 1.66e-64 | 48 |
phagocyte | 1.66e-64 | 48 |
macrophage dendritic cell progenitor | 4.43e-57 | 61 |
granulocyte monocyte progenitor cell | 1.23e-55 | 67 |
monopoietic cell | 9.35e-55 | 59 |
monocyte | 9.35e-55 | 59 |
monoblast | 9.35e-55 | 59 |
promonocyte | 9.35e-55 | 59 |
myeloid lineage restricted progenitor cell | 1.89e-52 | 66 |
myeloid leukocyte | 1.14e-47 | 72 |
hematopoietic lineage restricted progenitor cell | 1.58e-41 | 120 |
nongranular leukocyte | 5.07e-38 | 115 |
leukocyte | 6.29e-36 | 136 |
myeloid cell | 3.64e-35 | 108 |
common myeloid progenitor | 3.64e-35 | 108 |
hematopoietic oligopotent progenitor cell | 1.57e-31 | 161 |
hematopoietic multipotent progenitor cell | 1.57e-31 | 161 |
hematopoietic stem cell | 5.94e-30 | 168 |
hematopoietic cell | 4.17e-28 | 177 |
mesenchymal cell | 9.39e-11 | 354 |
connective tissue cell | 2.05e-10 | 361 |
motile cell | 3.23e-09 | 386 |
multi fate stem cell | 9.42e-08 | 427 |
somatic stem cell | 1.50e-07 | 433 |
stem cell | 2.74e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.45e-52 | 76 |
bone element | 5.53e-48 | 82 |
hematopoietic system | 1.58e-45 | 98 |
blood island | 1.58e-45 | 98 |
immune system | 6.12e-45 | 93 |
skeletal element | 3.08e-43 | 90 |
hemolymphoid system | 8.87e-41 | 108 |
skeletal system | 2.31e-38 | 100 |
musculoskeletal system | 1.20e-20 | 167 |
lateral plate mesoderm | 7.48e-19 | 203 |
connective tissue | 5.96e-10 | 371 |
mesoderm | 6.60e-10 | 315 |
mesoderm-derived structure | 6.60e-10 | 315 |
presumptive mesoderm | 6.60e-10 | 315 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 7.19e-07 | 1 |
monogenic disease | 7.19e-07 | 1 |
xeroderma pigmentosum | 7.19e-07 | 1 |