FFCP PHASE1:Hg19::chr3:129513704..129513729,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23023 | |EntrezGene=23023 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29116 | |HGNC=29116 | ||
|TSSclassifier=strong | |||
|UniProt=O94876 | |UniProt=O94876 | ||
|association_with_transcript=-445bp_to_ENST00000329333,uc011blc.1_5end | |association_with_transcript=-445bp_to_ENST00000329333,uc011blc.1_5end | ||
|cluster_id=chr3:129513704..129513729,- | |||
|coexpression_cluster_id=C363 | |coexpression_cluster_id=C363 | ||
|description=CAGE_peak_12_at_TMCC1_5end | |description=CAGE_peak_12_at_TMCC1_5end | ||
|id=chr3:129513704..129513729,- | |id=chr3:129513704..129513729,- | ||
|ontology_enrichment_celltype=CL:0000066!3.93e-26!254;CL:0002076!2.86e-25!43;CL:0000223!7.82e-16!59;CL:0002251!1.34e-11!21;CL:0002368!8.41e-09!13;CL:0000076!1.95e-07!62 | |ontology_enrichment_celltype=CL:0000066!3.93e-26!254;CL:0002076!2.86e-25!43;CL:0000223!7.82e-16!59;CL:0002251!1.34e-11!21;CL:0002368!8.41e-09!13;CL:0000076!1.95e-07!62 | ||
|ontology_enrichment_celltype_v019=CL:0002166;7.36e-16;3!CL:0002541;2.42e-15;3!CL:0002621;3.56e-15;3!CL:0002159;3.32e-12;14!CL:0002076;7.74e-12;42!CL:0000349;1.65e-11;19!CL:0000317;1.89e-10;2!CL:1000448;1.89e-10;2!CL:0002308;1.89e-10;2!CL:0002140;1.89e-10;2!CL:0000622;4.09e-09;5!CL:0002251;6.25e-08;20!CL:0000154;1.15e-07;6!CL:0002231;4.01e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002166,6.21e-16,3;CL:0002541,1.82e-15,3;CL:0002621,2.67e-15,3;CL:0000066,2.85e-14,253;CL:0002076,1.66e-13,42;CL:0002159,2.57e-12,14;CL:0000349,1.51e-11,19;CL:0000317,1.23e-10,2;CL:1000448,1.23e-10,2;CL:0002308,1.23e-10,2;CL:0002140,1.23e-10,2;CL:0000622,3.51e-09,5;CL:0000223,4.07e-09,58;CL:0002251,7.17e-08,20;CL:0000154,1.01e-07,6;CL:0002231,5.06e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.17e-07;10!UBERON:0005564;1.17e-07;10 | |||
|ontology_enrichment_disease=DOID:1749!2.33e-15!14;DOID:305!6.19e-13!106;DOID:0050687!1.78e-08!143 | |ontology_enrichment_disease=DOID:1749!2.33e-15!14;DOID:305!6.19e-13!106;DOID:0050687!1.78e-08!143 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!3.01e-13!14;UBERON:0000158!3.01e-13!14;UBERON:0003124!7.48e-12!7;UBERON:0004119!7.99e-11!169;UBERON:0000925!7.99e-11!169;UBERON:0006595!7.99e-11!169;UBERON:0001004!3.21e-09!72;UBERON:0000344!4.51e-09!12;UBERON:0004923!7.92e-09!57;UBERON:0005911!4.01e-08!82;UBERON:0003729!2.25e-07!5;UBERON:0000065!4.14e-07!53;UBERON:0005156!4.29e-07!59;UBERON:0000990!4.29e-07!59;UBERON:0001987!4.76e-07!4;UBERON:0004340!4.76e-07!4 | |ontology_enrichment_uberon=UBERON:0005631!3.01e-13!14;UBERON:0000158!3.01e-13!14;UBERON:0003124!7.48e-12!7;UBERON:0004119!7.99e-11!169;UBERON:0000925!7.99e-11!169;UBERON:0006595!7.99e-11!169;UBERON:0001004!3.21e-09!72;UBERON:0000344!4.51e-09!12;UBERON:0004923!7.92e-09!57;UBERON:0005911!4.01e-08!82;UBERON:0003729!2.25e-07!5;UBERON:0000065!4.14e-07!53;UBERON:0005156!4.29e-07!59;UBERON:0000990!4.29e-07!59;UBERON:0001987!4.76e-07!4;UBERON:0004340!4.76e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;9.96e-17;10!UBERON:0000158;9.96e-17;10!UBERON:0003124;2.42e-15;3!UBERON:0000920;2.42e-15;3!UBERON:0001949;3.56e-15;3!UBERON:0003350;1.51e-14;8!UBERON:0000486;1.05e-13;12!UBERON:0001708;5.18e-12;4!UBERON:0008895;5.18e-12;4!UBERON:0003929;4.47e-11;7!UBERON:0000344;1.73e-10;20!UBERON:0002419;1.89e-10;2!UBERON:0007771;1.89e-10;2!UBERON:0003297;1.89e-10;2!UBERON:0001821;1.89e-10;2!UBERON:0003487;1.89e-10;2!UBERON:0001820;1.89e-10;2!UBERON:0011159;1.08e-09;5!UBERON:0000365;6.11e-09;5!UBERON:0000478;6.53e-09;24!UBERON:0005910;1.60e-07;6!UBERON:0004923;2.61e-07;55 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,5.15e-16,14;UBERON:0000158,5.15e-16,14;UBERON:0000920,1.82e-15,3;UBERON:0001949,2.67e-15,3;UBERON:0003350,1.51e-14,8;UBERON:0001708,4.57e-12,4;UBERON:0008895,4.57e-12,4;UBERON:0003124,1.81e-11,7;UBERON:0004923,6.99e-11,66;UBERON:0002419,1.23e-10,2;UBERON:0007771,1.23e-10,2;UBERON:0003297,1.23e-10,2;UBERON:0001821,1.23e-10,2;UBERON:0003487,1.23e-10,2;UBERON:0001820,1.23e-10,2;UBERON:0005089,1.23e-10,2;UBERON:0005088,1.23e-10,2;UBERON:0000344,2.25e-10,20;UBERON:0011159,9.75e-10,5;UBERON:0000478,6.09e-09,24;UBERON:0000365,7.21e-09,5;UBERON:0010188,3.53e-08,6;UBERON:0002539,3.53e-08,6;UBERON:0008816,3.53e-08,6;UBERON:0004119,5.87e-08,160;UBERON:0000925,5.87e-08,160;UBERON:0006595,5.87e-08,160;UBERON:0005910,1.84e-07,6;UBERON:0000161,4.64e-07,36;UBERON:0005911,7.16e-07,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.873765488520689,1.31883489114227,0,0,0,0,0,0,0,0,0,0,0,0.376627918784408,0,0,0,0,0,0,0.919421224478927,0.90361775633475,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.70565194428616,3.54569956768085,2.86804595389004,0,0,0,0.207322110030741,0.252320850875628,0,0,0,0,0,0,0,0.168584690078102,0,0.220587945464788,0,0,0.269662616320329,0,0,0,0,0,0,0,0,0,0,1.10689594688802,0,5.37776398502265,0,0.603173834469785,0.277765335475589,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,4.68669169933885,11.0868204611247,3.68615252830205,0.626909658919938,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.909382714338778,3.32870879020994,0.604780586659361,0,0,0.280660094433074,0,0.511707249066704,0,0,0,0,0.0821271560138091,0,0,1.0877350463246,2.20557117333613,0.552485933615378,0,0,0,0,0.539107359730903,0,0,1.47772280450026,0,0,0,0,0,0,0,0.831076008928724,0.223874754722178,0,0,0,0,0.325378394664303,0.103041011647722,0,0,1.72279661398852,3.90036147621913,0,0,0,0,0,0,0,0,0,1.81813406897076,2.30628080838127,4.33883222481586,0.4046311234222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15466535270614,0,0,0.659006605437454,3.44404298136984,0,0,1.1486170010348,0,0,0,0,0,0,0,0,0,0.962479855263359,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.53614521001611,0,1.22864280839693,0,0.140669416410513,0,0,0,0,0,0,0.818149460017238,0,0,0.269605053441981,1.07412704805365,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,2.92789862985067,0,0,0,0,0.108647371922008,5.10401855571071,1.83195186803725,4.26427820814908,0,0,0,0,0,0,0,0,0.210998064528027,0.163232808159148,0.565412285735763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30607276163049,0.063186579628488,0,0,0,0,0,0,0.569219092059585,0.138674673013139,0.694238953340524,0.587954384486266,0.522355239482415,0,0.859930162358083,0,0,0,0,0,0,0,0,0,2.34661659281764,0.160317640503067,0,0.19980960958213,0,0,0,0,0,0.707082103850386,0.67952103036807,0.209205692624666,0,0,0,0,0,0,0,0,0,0,0.798716001995964,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0.137539436597234,0,0,0.77380195455795,0,0.335434687599266,0.0788057072991982,0.104909176269996,0,0,0.383830394638891,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0.854299300541557,2.04365596629566,0.414239055347196,0,0,0,1.91502377331055,0,0,0,0,0,0,0,0,0,0,0,0,0.249960815924213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26184898228651,0,0.428883182749851,0.260994291965212,0,0,0,0.179088841081487,0,0,0,0.38582807654183,0,0,0,0,0,0,0,0,0,0,1.05656061679314,0,0,0,0,0,1.11903606175556,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392590874004102,1.06172751012966,0.550285795565037,0.231051332300676,0,0,0,0,0,0,0,0,2.36569737947272,0.0675375846183947,0,0,0,0,0,0,0,0.255524855279191,0.535701835878287,0,0,0.227662191351298,0.620916591138472,0,0,0,0,0.236387681767936,0.222462803784138,0,0,1.68163297988273,0,0,0,0,0,0,0,0,0,0,2.07377898544228,0,0,0,0,0.9164274741762,0,0,3.57937381752935,0.785201868921944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,3.52894871715692,0.240724100067505,0,0,0,0,0,0,0,0,0,0,0,0,0,0.713921808193872,1.60330443159336,2.20547758883628,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0.202117188958219,0.435433495793923,0,0,0.358611026963382,0,1.22104902916462,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.873765488520689,1.31883489114227,0,0,0,0,0,0,0,0,0,0,0,0.376627918784408,0,0,0,0,0,0,0.919421224478927,0.90361775633475,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.70565194428616,3.54569956768085,2.86804595389004,0,0,0,0.207322110030741,0.252320850875628,0,0,0,0,0,0,0,0.168584690078102,0,0.220587945464788,0,0,0.269662616320329,0,0,0,0,0,0,0,0,0,0,1.10689594688802,0,5.37776398502265,0,0.603173834469785,0.277765335475589,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,4.68669169933885,11.0868204611247,3.68615252830205,0.626909658919938,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.909382714338778,3.32870879020994,0.604780586659361,0,0,0.280660094433074,0,0.511707249066704,0,0,0,0,0.0821271560138091,0,0,1.0877350463246,2.20557117333613,0.552485933615378,0,0,0,0,0.539107359730903,0,0,1.47772280450026,0,0,0,0,0,0,0,0.831076008928724,0.223874754722178,0,0,0,0,0.325378394664303,0.103041011647722,0,0,1.72279661398852,3.90036147621913,0,0,0,0,0,0,0,0,0,1.81813406897076,2.30628080838127,4.33883222481586,0.4046311234222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15466535270614,0,0,0.659006605437454,3.44404298136984,0,0,1.1486170010348,0,0,0,0,0,0,0,0,0,0.962479855263359,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.53614521001611,0,1.22864280839693,0,0.140669416410513,0,0,0,0,0,0,0.818149460017238,0,0,0.269605053441981,1.07412704805365,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,2.92789862985067,0,0,0,0,0.108647371922008,5.10401855571071,1.83195186803725,4.26427820814908,0,0,0,0,0,0,0,0,0.210998064528027,0.163232808159148,0.565412285735763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30607276163049,0.063186579628488,0,0,0,0,0,0,0.569219092059585,0.138674673013139,0.694238953340524,0.587954384486266,0.522355239482415,0,0.859930162358083,0,0,0,0,0,0,0,0,0,2.34661659281764,0.160317640503067,0,0.19980960958213,0,0,0,0,0,0.707082103850386,0.67952103036807,0.209205692624666,0,0,0,0,0,0,0,0,0,0,0.798716001995964,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0.137539436597234,0,0,0.77380195455795,0,0.335434687599266,0.0788057072991982,0.104909176269996,0,0,0.383830394638891,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0.854299300541557,2.04365596629566,0.414239055347196,0,0,0,1.91502377331055,0,0,0,0,0,0,0,0,0,0,0,0,0.249960815924213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26184898228651,0,0.428883182749851,0.260994291965212,0,0,0,0.179088841081487,0,0,0,0.38582807654183,0,0,0,0,0,0,0,0,0,0,1.05656061679314,0,0,0,0,0,1.11903606175556,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392590874004102,1.06172751012966,0.550285795565037,0.231051332300676,0,0,0,0,0,0,0,0,2.36569737947272,0.0675375846183947,0,0,0,0,0,0,0,0.255524855279191,0.535701835878287,0,0,0.227662191351298,0.620916591138472,0,0,0,0,0.236387681767936,0.222462803784138,0,0,1.68163297988273,0,0,0,0,0,0,0,0,0,0,2.07377898544228,0,0,0,0,0.9164274741762,0,0,3.57937381752935,0.785201868921944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,3.52894871715692,0.240724100067505,0,0,0,0,0,0,0,0,0,0,0,0,0,0.713921808193872,1.60330443159336,2.20547758883628,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0.202117188958219,0.435433495793923,0,0,0.358611026963382,0,1.22104902916462,0,0,0,0,0,0,0,0,0 | ||
|short_description=p12@TMCC1 | |short_description=p12@TMCC1 | ||
}} | }} |
Latest revision as of 18:20, 24 September 2015
Short description: | p12@TMCC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_TMCC1_5end |
Coexpression cluster: | C363_Mallassezderived_Gingival_Keratinocyte_Mammary_Prostate_Small_Urothelial |
Association with transcript: | -445bp_to_ENST00000329333, uc011blc.1_5end |
EntrezGene: | TMCC1 |
HGNC: | 29116 |
UniProt: | O94876 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of Malassez | 6.21e-16 | 3 |
chorionic membrane mesenchymal stem cell | 1.82e-15 | 3 |
gingival epithelial cell | 2.67e-15 | 3 |
epithelial cell | 2.85e-14 | 253 |
endo-epithelial cell | 1.66e-13 | 42 |
general ecto-epithelial cell | 2.57e-12 | 14 |
extraembryonic cell | 1.51e-11 | 19 |
sebum secreting cell | 1.23e-10 | 2 |
epithelial cell of sweat gland | 1.23e-10 | 2 |
epithelial cell of skin gland | 1.23e-10 | 2 |
acinar cell of sebaceous gland | 1.23e-10 | 2 |
acinar cell | 3.51e-09 | 5 |
endodermal cell | 4.07e-09 | 58 |
epithelial cell of alimentary canal | 7.17e-08 | 20 |
protein secreting cell | 1.01e-07 | 6 |
epithelial cell of prostate | 5.06e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 5.15e-16 | 14 |
membranous layer | 5.15e-16 | 14 |
egg chorion | 1.82e-15 | 3 |
gingival epithelium | 2.67e-15 | 3 |
epithelium of mucosa | 1.51e-14 | 8 |
jaw skeleton | 4.57e-12 | 4 |
splanchnocranium | 4.57e-12 | 4 |
chorion | 1.81e-11 | 7 |
organ component layer | 6.99e-11 | 66 |
skin gland | 1.23e-10 | 2 |
epidermis gland | 1.23e-10 | 2 |
gland of integumental system | 1.23e-10 | 2 |
sebaceous gland | 1.23e-10 | 2 |
skin sebaceous gland | 1.23e-10 | 2 |
sweat gland | 1.23e-10 | 2 |
sweat gland placode | 1.23e-10 | 2 |
sebaceous gland placode | 1.23e-10 | 2 |
mucosa | 2.25e-10 | 20 |
primary subdivision of cranial skeletal system | 9.75e-10 | 5 |
extraembryonic structure | 6.09e-09 | 24 |
urothelium | 7.21e-09 | 5 |
protuberance | 3.53e-08 | 6 |
pharyngeal arch | 3.53e-08 | 6 |
embryonic head | 3.53e-08 | 6 |
endoderm-derived structure | 5.87e-08 | 160 |
endoderm | 5.87e-08 | 160 |
presumptive endoderm | 5.87e-08 | 160 |
transitional epithelium | 1.84e-07 | 6 |
orifice | 4.64e-07 | 36 |
endo-epithelium | 7.16e-07 | 82 |