FFCP PHASE1:Hg19::chr19:7587555..7587570,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:7587555..7587570,+
|short_description=p2@MCOLN1
|description=CAGE_peak_2_at_MCOLN1_5end
|association_with_transcript=43bp_to_uc002mgo.2,uc002mgp.2,uc010dv...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57192 | |EntrezGene=57192 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13356 | |HGNC=13356 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=43bp_to_uc002mgo.2,uc002mgp.2,uc010dvh.1_5end | |||
|cluster_id=chr19:7587555..7587570,+ | |||
|coexpression_cluster_id=C392 | |||
|description=CAGE_peak_2_at_MCOLN1_5end | |||
|id=chr19:7587555..7587570,+ | |||
|ontology_enrichment_celltype=CL:0000766!3.18e-26!76;CL:0002057!4.20e-24!42;CL:0002194!4.22e-24!63;CL:0000576!4.22e-24!63;CL:0000040!4.22e-24!63;CL:0000559!4.22e-24!63;CL:0000860!4.66e-24!45;CL:0000839!1.53e-23!70;CL:0002009!6.02e-23!65;CL:0000557!9.87e-21!71;CL:0000763!1.60e-10!112;CL:0000049!1.60e-10!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.70e-20;33!CL:0002057;6.70e-20;33!CL:0000473;9.41e-20;39!CL:0000234;9.41e-20;39!CL:0000576;1.19e-15;48!CL:0000766;9.49e-13;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.20e-28,48;CL:0000234,1.20e-28,48;CL:0000766,2.77e-28,72;CL:0002194,3.01e-26,59;CL:0000576,3.01e-26,59;CL:0000040,3.01e-26,59;CL:0000559,3.01e-26,59;CL:0000839,1.76e-25,66;CL:0002009,5.67e-25,61;CL:0000860,6.66e-25,42;CL:0002057,6.66e-25,42;CL:0000557,1.11e-22,67;CL:0000763,1.54e-11,108;CL:0000049,1.54e-11,108 | |||
|ontology_enrichment_development_v019=CL:0002057;2.25e-18;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.75e-21!112;UBERON:0002390!1.41e-20!102;UBERON:0003061!1.41e-20!102;UBERON:0002371!1.25e-18!80;UBERON:0002405!1.94e-18!115;UBERON:0000468!8.61e-18!659;UBERON:0001474!2.59e-17!86;UBERON:0003081!7.90e-17!216;UBERON:0000467!8.67e-16!625;UBERON:0000480!1.49e-15!626;UBERON:0004765!4.74e-14!101;UBERON:0001434!4.74e-14!101;UBERON:0000923!3.62e-13!604;UBERON:0005291!3.62e-13!604;UBERON:0006598!3.62e-13!604;UBERON:0002532!3.62e-13!604;UBERON:0002050!6.68e-13!605;UBERON:0005423!6.68e-13!605;UBERON:0000922!3.93e-12!612;UBERON:0007023!2.02e-11!115;UBERON:0000062!2.44e-11!511;UBERON:0002204!1.67e-10!167;UBERON:0000926!8.08e-10!448;UBERON:0004120!8.08e-10!448;UBERON:0006603!8.08e-10!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.31e-23,108;UBERON:0002390,1.77e-22,98;UBERON:0003061,1.77e-22,98;UBERON:0002405,4.39e-21,93;UBERON:0002371,2.92e-20,76;UBERON:0003081,6.06e-20,203;UBERON:0001474,5.77e-19,82;UBERON:0004765,2.47e-17,90;UBERON:0000926,1.10e-15,315;UBERON:0004120,1.10e-15,315;UBERON:0006603,1.10e-15,315;UBERON:0001434,1.96e-14,100;UBERON:0002050,1.01e-13,564;UBERON:0000923,1.43e-13,560;UBERON:0010316,1.43e-13,560;UBERON:0005291,1.43e-13,560;UBERON:0006598,1.43e-13,560;UBERON:0010317,1.43e-13,560;UBERON:0002532,1.43e-13,560;UBERON:0005423,8.46e-12,581;UBERON:0007023,2.84e-11,114;UBERON:0000922,1.58e-10,592;UBERON:0002204,2.79e-10,167 | |||
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| ||
|short_description=p2@MCOLN1 | |||
}} | }} |
Latest revision as of 20:44, 24 September 2015
Short description: | p2@MCOLN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_MCOLN1_5end |
Coexpression cluster: | C392_Monocytederived_CD14_Macrophage_CD14CD16_Dendritic_Eosinophils_migratory |
Association with transcript: | 43bp_to_uc002mgo.2, uc002mgp.2, uc010dvh.1_5end |
EntrezGene: | MCOLN1 |
HGNC: | 13356 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.20e-28 | 48 |
phagocyte | 1.20e-28 | 48 |
myeloid leukocyte | 2.77e-28 | 72 |
monopoietic cell | 3.01e-26 | 59 |
monocyte | 3.01e-26 | 59 |
monoblast | 3.01e-26 | 59 |
promonocyte | 3.01e-26 | 59 |
myeloid lineage restricted progenitor cell | 1.76e-25 | 66 |
macrophage dendritic cell progenitor | 5.67e-25 | 61 |
classical monocyte | 6.66e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.66e-25 | 42 |
granulocyte monocyte progenitor cell | 1.11e-22 | 67 |
myeloid cell | 1.54e-11 | 108 |
common myeloid progenitor | 1.54e-11 | 108 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 2.31e-23 | 108 |
hematopoietic system | 1.77e-22 | 98 |
blood island | 1.77e-22 | 98 |
immune system | 4.39e-21 | 93 |
bone marrow | 2.92e-20 | 76 |
lateral plate mesoderm | 6.06e-20 | 203 |
bone element | 5.77e-19 | 82 |
skeletal element | 2.47e-17 | 90 |
mesoderm | 1.10e-15 | 315 |
mesoderm-derived structure | 1.10e-15 | 315 |
presumptive mesoderm | 1.10e-15 | 315 |
skeletal system | 1.96e-14 | 100 |
embryonic structure | 1.01e-13 | 564 |
germ layer | 1.43e-13 | 560 |
germ layer / neural crest | 1.43e-13 | 560 |
embryonic tissue | 1.43e-13 | 560 |
presumptive structure | 1.43e-13 | 560 |
germ layer / neural crest derived structure | 1.43e-13 | 560 |
epiblast (generic) | 1.43e-13 | 560 |
developing anatomical structure | 8.46e-12 | 581 |
adult organism | 2.84e-11 | 114 |
embryo | 1.58e-10 | 592 |
musculoskeletal system | 2.79e-10 | 167 |