FFCP PHASE1:Hg19::chr3:139258382..139258393,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5947 | |EntrezGene=5947 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9919 | |HGNC=9919 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=277bp_to_uc010huj.2_5end | |association_with_transcript=277bp_to_uc010huj.2_5end | ||
|cluster_id=chr3:139258382..139258393,- | |||
|coexpression_cluster_id=C1921 | |||
|description=CAGE_peak_5_at_RBP1_5end | |description=CAGE_peak_5_at_RBP1_5end | ||
|id=chr3:139258382..139258393,- | |id=chr3:139258382..139258393,- | ||
|ontology_enrichment_celltype=CL:0002319!2.88e-08!25;CL:0000128!3.84e-07!7;CL:0000126!3.84e-07!7;CL:0000127!3.84e-07!7;CL:0002453!3.84e-07!7 | |ontology_enrichment_celltype=CL:0002319!2.88e-08!25;CL:0000128!3.84e-07!7;CL:0000126!3.84e-07!7;CL:0000127!3.84e-07!7;CL:0002453!3.84e-07!7 | ||
|ontology_enrichment_celltype_v019=CL:0000128;4.75e-15;7!CL:0000126;4.75e-15;7!CL:0000127;4.75e-15;7!CL:1000507;2.75e-09;10!CL:1000494;2.75e-09;10!CL:0000669;8.41e-09;4!CL:0002319;1.46e-08;25!CL:0000064;2.13e-08;3!CL:0000067;2.13e-08;3!CL:0005012;2.13e-08;3!CL:0002304;2.13e-08;3!CL:0002603;4.82e-08;3!CL:0002605;9.10e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000128,4.75e-15,7;CL:0000126,4.75e-15,7;CL:0000127,4.75e-15,7;CL:0002453,4.75e-15,7;CL:1000507,1.96e-09,10;CL:1000494,1.96e-09,10;CL:0000669,6.06e-09,4;CL:0002319,1.25e-08,25;CL:0000064,2.14e-08,3;CL:0000067,2.14e-08,3;CL:0005012,2.14e-08,3;CL:0002304,2.14e-08,3;CL:0002603,4.68e-08,3;CL:0000133,8.46e-08,59 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!1.53e-18!86;UBERON:0000481!2.37e-18!347;UBERON:0000073!3.52e-18!94;UBERON:0001016!3.52e-18!94;UBERON:0000033!5.74e-18!123;UBERON:0000475!6.95e-18!365;UBERON:0000153!1.16e-17!129;UBERON:0007811!1.16e-17!129;UBERON:0002346!2.03e-16!90;UBERON:0000924!2.64e-16!173;UBERON:0006601!2.64e-16!173;UBERON:0001017!2.91e-16!82;UBERON:0003075!2.09e-15!86;UBERON:0007284!2.09e-15!86;UBERON:0004121!2.32e-15!169;UBERON:0000477!4.24e-15!286;UBERON:0000119!5.93e-15!312;UBERON:0004111!1.10e-14!241;UBERON:0000483!5.21e-14!309;UBERON:0000955!4.70e-13!69;UBERON:0006238!4.70e-13!69;UBERON:0000922!7.81e-13!612;UBERON:0002616!1.65e-12!59;UBERON:0000468!2.11e-12!659;UBERON:0000025!5.27e-12!194;UBERON:0003056!1.96e-11!61;UBERON:0000064!5.26e-11!219;UBERON:0001049!1.71e-10!57;UBERON:0005068!1.71e-10!57;UBERON:0006241!1.71e-10!57;UBERON:0007135!1.71e-10!57;UBERON:0000467!1.98e-10!625;UBERON:0002050!2.00e-10!605;UBERON:0005423!2.00e-10!605;UBERON:0000480!2.66e-10!626;UBERON:0000923!4.38e-10!604;UBERON:0005291!4.38e-10!604;UBERON:0006598!4.38e-10!604;UBERON:0002532!4.38e-10!604;UBERON:0000062!5.81e-10!511;UBERON:0000466!7.95e-10!126;UBERON:0001032!2.27e-09!24;UBERON:0004456!2.27e-09!24;UBERON:0007625!9.44e-09!11;UBERON:0000020!1.08e-08!23;UBERON:0001048!3.04e-08!168;UBERON:0002104!4.06e-08!21;UBERON:0007023!7.67e-08!115;UBERON:0000970!1.90e-07!20;UBERON:0002200!2.84e-07!11;UBERON:0006876!2.84e-07!11;UBERON:0005256!4.55e-07!143;UBERON:0000464!4.55e-07!104;UBERON:0003064!5.08e-07!37;UBERON:0000019!5.31e-07!19;UBERON:0000047!5.31e-07!19;UBERON:0004088!5.31e-07!19;UBERON:0003072!5.31e-07!19;UBERON:0003071!5.31e-07!19;UBERON:0004128!5.31e-07!19;UBERON:0005177!6.87e-07!107;UBERON:0003101!8.91e-07!22;UBERON:0000079!8.91e-07!22 | |ontology_enrichment_uberon=UBERON:0005743!1.53e-18!86;UBERON:0000481!2.37e-18!347;UBERON:0000073!3.52e-18!94;UBERON:0001016!3.52e-18!94;UBERON:0000033!5.74e-18!123;UBERON:0000475!6.95e-18!365;UBERON:0000153!1.16e-17!129;UBERON:0007811!1.16e-17!129;UBERON:0002346!2.03e-16!90;UBERON:0000924!2.64e-16!173;UBERON:0006601!2.64e-16!173;UBERON:0001017!2.91e-16!82;UBERON:0003075!2.09e-15!86;UBERON:0007284!2.09e-15!86;UBERON:0004121!2.32e-15!169;UBERON:0000477!4.24e-15!286;UBERON:0000119!5.93e-15!312;UBERON:0004111!1.10e-14!241;UBERON:0000483!5.21e-14!309;UBERON:0000955!4.70e-13!69;UBERON:0006238!4.70e-13!69;UBERON:0000922!7.81e-13!612;UBERON:0002616!1.65e-12!59;UBERON:0000468!2.11e-12!659;UBERON:0000025!5.27e-12!194;UBERON:0003056!1.96e-11!61;UBERON:0000064!5.26e-11!219;UBERON:0001049!1.71e-10!57;UBERON:0005068!1.71e-10!57;UBERON:0006241!1.71e-10!57;UBERON:0007135!1.71e-10!57;UBERON:0000467!1.98e-10!625;UBERON:0002050!2.00e-10!605;UBERON:0005423!2.00e-10!605;UBERON:0000480!2.66e-10!626;UBERON:0000923!4.38e-10!604;UBERON:0005291!4.38e-10!604;UBERON:0006598!4.38e-10!604;UBERON:0002532!4.38e-10!604;UBERON:0000062!5.81e-10!511;UBERON:0000466!7.95e-10!126;UBERON:0001032!2.27e-09!24;UBERON:0004456!2.27e-09!24;UBERON:0007625!9.44e-09!11;UBERON:0000020!1.08e-08!23;UBERON:0001048!3.04e-08!168;UBERON:0002104!4.06e-08!21;UBERON:0007023!7.67e-08!115;UBERON:0000970!1.90e-07!20;UBERON:0002200!2.84e-07!11;UBERON:0006876!2.84e-07!11;UBERON:0005256!4.55e-07!143;UBERON:0000464!4.55e-07!104;UBERON:0003064!5.08e-07!37;UBERON:0000019!5.31e-07!19;UBERON:0000047!5.31e-07!19;UBERON:0004088!5.31e-07!19;UBERON:0003072!5.31e-07!19;UBERON:0003071!5.31e-07!19;UBERON:0004128!5.31e-07!19;UBERON:0005177!6.87e-07!107;UBERON:0003101!8.91e-07!22;UBERON:0000079!8.91e-07!22 | ||
|ontology_enrichment_uberon_v019=UBERON:0007625;1.17e-16;11!UBERON:0002104;2.98e-13;21!UBERON:0001032;3.35e-13;24!UBERON:0004456;3.35e-13;24!UBERON:0000019;1.38e-12;19!UBERON:0000047;1.38e-12;19!UBERON:0004088;1.38e-12;19!UBERON:0010230;1.38e-12;19!UBERON:0000020;7.92e-12;23!UBERON:0000970;8.09e-12;20!UBERON:0001456;4.00e-11;21!UBERON:0000488;1.71e-10;4!UBERON:0001801;7.85e-10;14!UBERON:0006876;1.90e-09;11!UBERON:0004211;2.75e-09;10!UBERON:0009773;2.75e-09;10!UBERON:0001231;2.75e-09;10!UBERON:0004810;2.75e-09;10!UBERON:0001778;2.13e-08;3!UBERON:0001775;2.13e-08;3!UBERON:0002203;6.41e-07;6!UBERON:0001768;6.41e-07;6!UBERON:0002200;6.41e-07;6 | |||
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| ||
|short_description=p5@RBP1 | |short_description=p5@RBP1 | ||
}} | }} |
Latest revision as of 02:01, 25 September 2015
Short description: | p5@RBP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RBP1_5end |
Coexpression cluster: | C1921_small_Renal_Ciliary_Astrocyte_Lens_Meningeal_maxillary |
Association with transcript: | 277bp_to_uc010huj.2_5end |
EntrezGene: | RBP1 |
HGNC: | 9919 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte | 4.75e-15 | 7 |
macroglial cell | 4.75e-15 | 7 |
astrocyte | 4.75e-15 | 7 |
oligodendrocyte precursor cell | 4.75e-15 | 7 |
kidney tubule cell | 1.96e-09 | 10 |
nephron tubule epithelial cell | 1.96e-09 | 10 |
pericyte cell | 6.06e-09 | 4 |
neural cell | 1.25e-08 | 25 |
ciliated cell | 2.14e-08 | 3 |
ciliated epithelial cell | 2.14e-08 | 3 |
multi-ciliated epithelial cell | 2.14e-08 | 3 |
non-pigmented ciliary epithelial cell | 2.14e-08 | 3 |
astrocyte of the cerebellum | 4.68e-08 | 3 |
neurectodermal cell | 8.46e-08 | 59 |
Ontology term | p-value | n |
---|---|---|
pigment epithelium of eye | 1.31e-16 | 11 |
camera-type eye | 4.83e-14 | 20 |
simple eye | 4.83e-14 | 20 |
immature eye | 4.83e-14 | 20 |
ocular region | 4.83e-14 | 20 |
eyeball of camera-type eye | 4.83e-14 | 20 |
optic cup | 4.83e-14 | 20 |
optic vesicle | 4.83e-14 | 20 |
eye primordium | 4.83e-14 | 20 |
eye | 3.19e-13 | 21 |
visual system | 3.19e-13 | 21 |
sense organ | 3.59e-13 | 24 |
sensory system | 3.59e-13 | 24 |
entire sense organ system | 3.59e-13 | 24 |
face | 1.77e-12 | 22 |
neurectoderm | 1.38e-10 | 86 |
atypical epithelium | 1.77e-10 | 4 |
anterior segment of eyeball | 9.51e-10 | 14 |
vasculature of organ | 1.67e-09 | 11 |
nephron tubule epithelium | 1.96e-09 | 10 |
neural plate | 1.97e-09 | 82 |
presumptive neural plate | 1.97e-09 | 82 |
ciliary epithelium | 2.14e-08 | 3 |
ciliary body | 2.14e-08 | 3 |
ectoderm-derived structure | 5.22e-08 | 171 |
ectoderm | 5.22e-08 | 171 |
presumptive ectoderm | 5.22e-08 | 171 |
ectodermal placode | 5.52e-08 | 31 |
pre-chordal neural plate | 1.38e-07 | 61 |
cell layer | 1.90e-07 | 309 |
primordium | 2.24e-07 | 160 |
epithelium | 4.33e-07 | 306 |
vasculature of eye | 6.53e-07 | 6 |
uvea | 6.53e-07 | 6 |
vasculature of head | 6.53e-07 | 6 |
ecto-epithelium | 8.15e-07 | 104 |