FFCP PHASE1:Hg19::chr19:10679441..10679478,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
No edit summary |
No edit summary |
||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DPIdataset= | |DHSsupport=supported | ||
|DPIdataset=robust | |||
|EntrezGene=1032 | |EntrezGene=1032 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=1790 | |HGNC=1790 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=P55273 | |UniProt=P55273 | ||
|association_with_transcript=152bp_to_ENST00000393599,NM_001800,uc002mpa.2_5end | |association_with_transcript=152bp_to_ENST00000393599,NM_001800,uc002mpa.2_5end | ||
|cluster_id=chr19:10679441..10679478,- | |||
|coexpression_cluster_id=C2 | |coexpression_cluster_id=C2 | ||
|description=CAGE_peak_2_at_CDKN2D_5end | |description=CAGE_peak_2_at_CDKN2D_5end | ||
Latest revision as of 02:09, 25 September 2015
| Short description: | p2@CDKN2D |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_2_at_CDKN2D_5end |
| Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
| Association with transcript: | 152bp_to_ENST00000393599, NM_001800, uc002mpa.2_5end |
| EntrezGene: | CDKN2D |
| HGNC: | 1790 |
| UniProt: | P55273 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p2@CDKN2D |
|---|
0
50
100
150
200
250
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| leukocyte | 1.30e-37 | 136 |
| hematopoietic cell | 7.46e-34 | 177 |
| hematopoietic stem cell | 7.74e-34 | 168 |
| hematopoietic lineage restricted progenitor cell | 2.05e-30 | 120 |
| hematopoietic oligopotent progenitor cell | 2.23e-29 | 161 |
| hematopoietic multipotent progenitor cell | 2.23e-29 | 161 |
| nongranular leukocyte | 2.38e-29 | 115 |
| classical monocyte | 8.47e-25 | 42 |
| CD14-positive, CD16-negative classical monocyte | 8.47e-25 | 42 |
| myeloid leukocyte | 1.78e-21 | 72 |
Showing 1 to 10 of 42 entries
| Ontology term | p-value | n |
|---|---|---|
| hematopoietic system | 1.77e-22 | 98 |
| blood island | 1.77e-22 | 98 |
| hemolymphoid system | 7.53e-21 | 108 |
| immune system | 1.19e-14 | 93 |
| connective tissue | 2.05e-14 | 371 |
| bone marrow | 6.76e-14 | 76 |
| bone element | 6.14e-13 | 82 |
| skeletal element | 2.92e-11 | 90 |
| lateral plate mesoderm | 3.67e-10 | 203 |
| skeletal system | 3.88e-10 | 100 |
Showing 1 to 10 of 13 entries
