FFCP PHASE1:Hg19::chr1:221053049..221053075,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3142 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=4978 | |||
|TSSclassifier=strong | |||
|UniProt=Q14774 | |||
|association_with_transcript=306bp_to_NM_021958,uc001hmv.3_5end | |||
|cluster_id=chr1:221053049..221053075,+ | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_3_at_HLX_5end | |||
|id=chr1:221053049..221053075,+ | |||
|ontology_enrichment_celltype=CL:0000766!1.23e-26!76;CL:0002009!3.46e-25!65;CL:0000557!1.42e-24!71;CL:0002194!3.43e-24!63;CL:0000576!3.43e-24!63;CL:0000040!3.43e-24!63;CL:0000559!3.43e-24!63;CL:0000839!3.80e-21!70;CL:0000048!2.15e-19!430;CL:0002057!3.64e-19!42;CL:0000860!1.28e-18!45;CL:0000763!4.65e-18!112;CL:0000049!4.65e-18!112;CL:0000723!1.81e-17!436;CL:0002320!3.78e-16!365;CL:0000034!4.17e-16!444;CL:0000134!2.70e-15!358;CL:0000219!2.07e-11!390;CL:0000115!2.56e-08!35;CL:0000222!3.69e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.70e-22;33!CL:0002057;6.70e-22;33!CL:0000473;4.45e-20;39!CL:0000234;4.45e-20;39!CL:0000576;3.89e-16;48!CL:0000766;8.76e-12;69!CL:0000115;2.32e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,3.56e-27,61;CL:0000766,1.57e-26,72;CL:0002194,5.33e-26,59;CL:0000576,5.33e-26,59;CL:0000040,5.33e-26,59;CL:0000559,5.33e-26,59;CL:0000557,1.24e-24,67;CL:0000473,4.57e-23,48;CL:0000234,4.57e-23,48;CL:0000839,2.41e-21,66;CL:0000860,8.39e-21,42;CL:0002057,8.39e-21,42;CL:0000048,4.89e-19,427;CL:0000723,9.30e-18,433;CL:0000763,9.95e-18,108;CL:0000049,9.95e-18,108;CL:0000034,6.95e-17,441;CL:0002320,3.37e-15,361;CL:0000134,1.43e-14,354;CL:0000219,2.83e-10,386;CL:0000738,1.73e-08,136;CL:0000115,2.29e-08,36;CL:0000222,2.46e-07,121 | |||
|ontology_enrichment_development_v019=CL:0002057;9.19e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!5.09e-28!216;UBERON:0002193!2.05e-26!112;UBERON:0002204!4.97e-26!167;UBERON:0002371!7.57e-25!80;UBERON:0002390!1.10e-24!102;UBERON:0003061!1.10e-24!102;UBERON:0002405!4.01e-24!115;UBERON:0001474!1.17e-22!86;UBERON:0004765!2.26e-21!101;UBERON:0001434!2.26e-21!101;UBERON:0000926!2.90e-19!448;UBERON:0004120!2.90e-19!448;UBERON:0006603!2.90e-19!448;UBERON:0002384!4.46e-16!375;UBERON:0001009!5.53e-11!113;UBERON:0004535!8.76e-11!110;UBERON:0000055!1.74e-09!69;UBERON:0004872!3.76e-09!84;UBERON:0000467!5.98e-09!625;UBERON:0001981!9.62e-09!60;UBERON:0007500!9.62e-09!60;UBERON:0004537!9.62e-09!60;UBERON:0006965!9.62e-09!60;UBERON:0000480!9.85e-09!626;UBERON:0000479!1.40e-08!787;UBERON:0000468!7.44e-08!659;UBERON:0002049!1.09e-07!79;UBERON:0007798!1.09e-07!79 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,4.05e-33,203;UBERON:0000926,8.04e-31,315;UBERON:0004120,8.04e-31,315;UBERON:0006603,8.04e-31,315;UBERON:0002193,1.72e-26,108;UBERON:0002204,1.58e-25,167;UBERON:0002371,2.26e-25,76;UBERON:0002390,2.47e-25,98;UBERON:0003061,2.47e-25,98;UBERON:0002405,6.02e-24,93;UBERON:0001474,1.96e-22,82;UBERON:0004765,3.28e-21,90;UBERON:0001434,1.15e-20,100;UBERON:0002384,8.96e-15,371;UBERON:0001009,4.83e-11,112;UBERON:0004535,8.37e-11,109;UBERON:0000055,1.40e-09,68;UBERON:0007500,3.92e-09,59;UBERON:0001981,3.92e-09,59;UBERON:0004537,3.92e-09,59;UBERON:0006965,3.92e-09,59;UBERON:0004872,5.69e-09,83;UBERON:0002049,9.45e-08,78;UBERON:0007798,9.45e-08,78;UBERON:0000479,2.08e-07,773 | |||
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| |||
|short_description=p3@HLX | |||
}} |
Latest revision as of 07:03, 25 September 2015
Short description: | p3@HLX |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HLX_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 306bp_to_NM_021958, uc001hmv.3_5end |
EntrezGene: | HLX |
HGNC: | 4978 |
UniProt: | Q14774 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 3.56e-27 | 61 |
myeloid leukocyte | 1.57e-26 | 72 |
monopoietic cell | 5.33e-26 | 59 |
monocyte | 5.33e-26 | 59 |
monoblast | 5.33e-26 | 59 |
promonocyte | 5.33e-26 | 59 |
granulocyte monocyte progenitor cell | 1.24e-24 | 67 |
defensive cell | 4.57e-23 | 48 |
phagocyte | 4.57e-23 | 48 |
myeloid lineage restricted progenitor cell | 2.41e-21 | 66 |
classical monocyte | 8.39e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.39e-21 | 42 |
multi fate stem cell | 4.89e-19 | 427 |
somatic stem cell | 9.30e-18 | 433 |
myeloid cell | 9.95e-18 | 108 |
common myeloid progenitor | 9.95e-18 | 108 |
stem cell | 6.95e-17 | 441 |
connective tissue cell | 3.37e-15 | 361 |
mesenchymal cell | 1.43e-14 | 354 |
motile cell | 2.83e-10 | 386 |
leukocyte | 1.73e-08 | 136 |
endothelial cell | 2.29e-08 | 36 |
mesodermal cell | 2.46e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 4.05e-33 | 203 |
mesoderm | 8.04e-31 | 315 |
mesoderm-derived structure | 8.04e-31 | 315 |
presumptive mesoderm | 8.04e-31 | 315 |
hemolymphoid system | 1.72e-26 | 108 |
musculoskeletal system | 1.58e-25 | 167 |
bone marrow | 2.26e-25 | 76 |
hematopoietic system | 2.47e-25 | 98 |
blood island | 2.47e-25 | 98 |
immune system | 6.02e-24 | 93 |
bone element | 1.96e-22 | 82 |
skeletal element | 3.28e-21 | 90 |
skeletal system | 1.15e-20 | 100 |
connective tissue | 8.96e-15 | 371 |
circulatory system | 4.83e-11 | 112 |
cardiovascular system | 8.37e-11 | 109 |
vessel | 1.40e-09 | 68 |
epithelial tube open at both ends | 3.92e-09 | 59 |
blood vessel | 3.92e-09 | 59 |
blood vasculature | 3.92e-09 | 59 |
vascular cord | 3.92e-09 | 59 |
splanchnic layer of lateral plate mesoderm | 5.69e-09 | 83 |
vasculature | 9.45e-08 | 78 |
vascular system | 9.45e-08 | 78 |
tissue | 2.08e-07 | 773 |