FFCP PHASE1:Mm9::chr10:42580454..42580482,+: Difference between revisions
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{{FFCP|EntrezGene=268297|HGNC=|MCL_coexpression_id=40|UniProt=D3Z791|association_with_transcript=0bp_to_ENSMUST00000105495_5end|description=CAGE_peak_1_at_Scml4_5end|id=chr10:42580454..42580482,+|ontology_enrichment_celltype=CL:0000838!7.33e-09!12;CL:0000084!3.12e-08!11;CL:0000827!3.12e-08!11;CL:0000542!1.48e-07!13;CL:0000051!1.48e-07!13;CL:0000791!2.06e-07!9;CL:0000789!2.06e-07!9;CL:0002420!2.06e-07!9;CL:0002419!2.06e-07!9;CL:0000790!2.06e-07!9;CL:0000988!4.76e-07!32;CL:0002032!4.76e-07!32;CL:0000037!4.76e-07!32;CL:0000566!4.76e-07!32;CL:0000837!4.76e-07!32|ontology_enrichment_celltype_v019_2=CL:0000838,5.54e-13,12;CL:0000084,5.31e-12,11;CL:0000827,5.31e-12,11;CL:0000542,1.20e-11,13;CL:0000051,1.20e-11,13;CL:0000988,3.37e-11,32;CL:0002032,3.37e-11,32;CL:0000037,3.37e-11,32;CL:0000837,3.37e-11,32;CL:0002031,6.21e-11,25;CL:0000791,1.01e-10,9;CL:0000789,1.01e-10,9;CL:0002420,1.01e-10,9;CL:0002419,1.01e-10,9;CL:0000790,1.01e-10,9;CL:0000624,1.31e-09,8;CL:0000738,6.36e-08,17;CL:0002087,6.36e-08,17;CL:0000893,2.03e-07,6;CL:0002489,2.03e-07,6;CL:0000898,2.03e-07,6;CL:0000809,2.03e-07,6;CL:0000810,2.03e-07,6;CL:0000895,2.03e-07,6;CL:0000808,2.03e-07,6;CL:0000894,2.03e-07,6;CL:0000806,2.03e-07,6;CL:0000807,2.03e-07,6;CL:0000805,2.03e-07,6;CL:0002425,2.03e-07,6;CL:0002436,2.03e-07,6;CL:0002427,2.03e-07,6;CL:0002428,2.03e-07,6;CL:0002429,2.03e-07,6;CL:0002433,2.03e-07,6;CL:0002431,2.03e-07,6;CL:0002432,2.03e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!2.72e-10!48;UBERON:0004177!4.65e-10!29;UBERON:0002390!4.20e-09!45;UBERON:0003061!4.20e-09!45;UBERON:0003408!8.03e-09!24;UBERON:0006562!1.94e-08!24;UBERON:0001557!1.94e-08!24;UBERON:0001042!1.94e-08!24;UBERON:0008814!1.94e-08!24;UBERON:0009145!1.94e-08!24;UBERON:0002370!2.08e-08!23;UBERON:0000974!2.08e-08!23;UBERON:0004807!2.08e-08!23;UBERON:0005058!2.08e-08!23;UBERON:0003351!2.08e-08!23;UBERON:0009113!2.08e-08!23;UBERON:0003295!2.08e-08!23;UBERON:0009722!2.08e-08!23;UBERON:0005562!2.08e-08!23;UBERON:0007690!2.08e-08!23|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.15e-16,48;UBERON:0002405,1.15e-16,48;UBERON:0004177,7.35e-16,29;UBERON:0005057,7.35e-16,29;UBERON:0003408,2.78e-15,24;UBERON:0002390,9.51e-15,45;UBERON:0003061,9.51e-15,45;UBERON:0002370,1.27e-14,23;UBERON:0000974,1.27e-14,23;UBERON:0004807,1.27e-14,23;UBERON:0005058,1.27e-14,23;UBERON:0003351,1.27e-14,23;UBERON:0009113,1.27e-14,23;UBERON:0003295,1.27e-14,23;UBERON:0009722,1.27e-14,23;UBERON:0005562,1.27e-14,23;UBERON:0007690,1.27e-14,23;UBERON:0006562,1.03e-13,24;UBERON:0001557,1.03e-13,24;UBERON:0001042,1.03e-13,24;UBERON:0008814,1.03e-13,24;UBERON:0009145,1.03e-13,24;UBERON:0000077,1.09e-11,35;UBERON:0000072,2.09e-11,27;UBERON:0001004,5.79e-10,42;UBERON:0000065,2.04e-09,41;UBERON:0007811,7.99e-08,36;UBERON:0002530,1.19e-07,65;UBERON:0002368,7.76e-07,60|phase1_expression=0.160148847104794,0,1.36499771816861,0,0,0.503637815735669,1.40167584357315,59.5258521065667,52.2326159182684,46.5788407380767,4.28044920563762,3.11111420081812,179.760766427766,126.759583507546,1.99865857089398,6.47920855647443,1.39912375625629,25.236973228659,27.5600011547535,21.2194825899015,0.765389611359628,3.27660138962921,2.35079810225042,1.43993180514066,1.83527424853736,0,0.86152399231815,0.215471232685889,0,0.504060259519861,0.221730510655305,0,0,0,0,0.166234645358492,0.204169356262369,0.418531630736908,0,1.57057123192139,2.35292595212406,0.683045484958446,1.45653105909346,0,0,0,0,0.436050312760893,0.219686182734472,0,0.279972843250725,0,13.2548258785612,70.3601277751004,108.894390922158,0.257259436035947,0.286533439938757,0,4.04632921719196,3.1739458756322,1.26766280701236,0,0,0,0,0,0,0,0.103689612308478,0.810035629990144,0.630974884054146,1.42825492201902,1.32521124570968,2.9397791811589,3.35459148563827,3.67687514644008,0,0.255374676170375,0.46081959976873,3.56092976871523,2.65314166446988,1.04182674111352,0.837548997004143,0.56276261003168,0.763991238884051,1.17851434189467,1.99320353118744,1.4911955666024,0.075726193333184,0.377857800533928,0,0.860423876981386,0,0,0,0,1.82577746171277,0,0,0,0,0,0,0,0,0,0,1.7127581957859,37.0281173615456,2.9688427812965,1.56136794089522,1.52232739156071,1.84492397804847,2.26083960828934,2.11659672844269,2.51333182659351,0,0.722996784599558,0.884610551949874,0.485300549842228,0.441683036920787,0.484875253135222,0,0,0,0.510914110417183,4.79260498023681,1.19980546198682,2.66847476853436,0.898743836428936,0,4.14659361972453,0.347648640384553,1.02286182932132,0.41557608911912,0.486723789203273,0.101839363850316,2.98576729464223,0,0,0,0,0,0.30140963567143,0.340182495756639,0.12811372028485,0,0,0,0.189106080167819,0.351902248327898,0,0,0.348252166522167,0.61734640922383,0,0.702213187313235,0.772043721344145,1.42081749697796,0,0,0,0,0,0,0,0,0.350296027101508,0,0.164167464079095,0.56748166682099,0.146199987425332,0,0.134206418760372,0.210289948564127,0.514523061896422,2.31293148088659,0,0,0,0.128867461322093,0,0.444756087689741,0.5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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=268297 | |||
|HGNC= | |||
|MCL_coexpression_id=40 | |||
|TSSclassifier=NA | |||
|UniProt=D3Z791 | |||
|association_with_transcript=0bp_to_ENSMUST00000105495_5end | |||
|cluster_id=chr10:42580454..42580482,+ | |||
|description=CAGE_peak_1_at_Scml4_5end | |||
|id=chr10:42580454..42580482,+ | |||
|ontology_enrichment_celltype=CL:0000838!7.33e-09!12;CL:0000084!3.12e-08!11;CL:0000827!3.12e-08!11;CL:0000542!1.48e-07!13;CL:0000051!1.48e-07!13;CL:0000791!2.06e-07!9;CL:0000789!2.06e-07!9;CL:0002420!2.06e-07!9;CL:0002419!2.06e-07!9;CL:0000790!2.06e-07!9;CL:0000988!4.76e-07!32;CL:0002032!4.76e-07!32;CL:0000037!4.76e-07!32;CL:0000566!4.76e-07!32;CL:0000837!4.76e-07!32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,5.54e-13,12;CL:0000084,5.31e-12,11;CL:0000827,5.31e-12,11;CL:0000542,1.20e-11,13;CL:0000051,1.20e-11,13;CL:0000988,3.37e-11,32;CL:0002032,3.37e-11,32;CL:0000037,3.37e-11,32;CL:0000837,3.37e-11,32;CL:0002031,6.21e-11,25;CL:0000791,1.01e-10,9;CL:0000789,1.01e-10,9;CL:0002420,1.01e-10,9;CL:0002419,1.01e-10,9;CL:0000790,1.01e-10,9;CL:0000624,1.31e-09,8;CL:0000738,6.36e-08,17;CL:0002087,6.36e-08,17;CL:0000893,2.03e-07,6;CL:0002489,2.03e-07,6;CL:0000898,2.03e-07,6;CL:0000809,2.03e-07,6;CL:0000810,2.03e-07,6;CL:0000895,2.03e-07,6;CL:0000808,2.03e-07,6;CL:0000894,2.03e-07,6;CL:0000806,2.03e-07,6;CL:0000807,2.03e-07,6;CL:0000805,2.03e-07,6;CL:0002425,2.03e-07,6;CL:0002436,2.03e-07,6;CL:0002427,2.03e-07,6;CL:0002428,2.03e-07,6;CL:0002429,2.03e-07,6;CL:0002433,2.03e-07,6;CL:0002431,2.03e-07,6;CL:0002432,2.03e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!2.72e-10!48;UBERON:0004177!4.65e-10!29;UBERON:0002390!4.20e-09!45;UBERON:0003061!4.20e-09!45;UBERON:0003408!8.03e-09!24;UBERON:0006562!1.94e-08!24;UBERON:0001557!1.94e-08!24;UBERON:0001042!1.94e-08!24;UBERON:0008814!1.94e-08!24;UBERON:0009145!1.94e-08!24;UBERON:0002370!2.08e-08!23;UBERON:0000974!2.08e-08!23;UBERON:0004807!2.08e-08!23;UBERON:0005058!2.08e-08!23;UBERON:0003351!2.08e-08!23;UBERON:0009113!2.08e-08!23;UBERON:0003295!2.08e-08!23;UBERON:0009722!2.08e-08!23;UBERON:0005562!2.08e-08!23;UBERON:0007690!2.08e-08!23 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.15e-16,48;UBERON:0002405,1.15e-16,48;UBERON:0004177,7.35e-16,29;UBERON:0005057,7.35e-16,29;UBERON:0003408,2.78e-15,24;UBERON:0002390,9.51e-15,45;UBERON:0003061,9.51e-15,45;UBERON:0002370,1.27e-14,23;UBERON:0000974,1.27e-14,23;UBERON:0004807,1.27e-14,23;UBERON:0005058,1.27e-14,23;UBERON:0003351,1.27e-14,23;UBERON:0009113,1.27e-14,23;UBERON:0003295,1.27e-14,23;UBERON:0009722,1.27e-14,23;UBERON:0005562,1.27e-14,23;UBERON:0007690,1.27e-14,23;UBERON:0006562,1.03e-13,24;UBERON:0001557,1.03e-13,24;UBERON:0001042,1.03e-13,24;UBERON:0008814,1.03e-13,24;UBERON:0009145,1.03e-13,24;UBERON:0000077,1.09e-11,35;UBERON:0000072,2.09e-11,27;UBERON:0001004,5.79e-10,42;UBERON:0000065,2.04e-09,41;UBERON:0007811,7.99e-08,36;UBERON:0002530,1.19e-07,65;UBERON:0002368,7.76e-07,60 | |||
|phase1_expression=0.160148847104794,0,1.36499771816861,0,0,0.503637815735669,1.40167584357315,59.5258521065667,52.2326159182684,46.5788407380767,4.28044920563762,3.11111420081812,179.760766427766,126.759583507546,1.99865857089398,6.47920855647443,1.39912375625629,25.236973228659,27.5600011547535,21.2194825899015,0.765389611359628,3.27660138962921,2.35079810225042,1.43993180514066,1.83527424853736,0,0.86152399231815,0.215471232685889,0,0.504060259519861,0.221730510655305,0,0,0,0,0.166234645358492,0.204169356262369,0.418531630736908,0,1.57057123192139,2.35292595212406,0.683045484958446,1.45653105909346,0,0,0,0,0.436050312760893,0.219686182734472,0,0.279972843250725,0,13.2548258785612,70.3601277751004,108.894390922158,0.257259436035947,0.286533439938757,0,4.04632921719196,3.1739458756322,1.26766280701236,0,0,0,0,0,0,0,0.103689612308478,0.810035629990144,0.630974884054146,1.42825492201902,1.32521124570968,2.9397791811589,3.35459148563827,3.67687514644008,0,0.255374676170375,0.46081959976873,3.56092976871523,2.65314166446988,1.04182674111352,0.837548997004143,0.56276261003168,0.763991238884051,1.17851434189467,1.99320353118744,1.4911955666024,0.075726193333184,0.377857800533928,0,0.860423876981386,0,0,0,0,1.82577746171277,0,0,0,0,0,0,0,0,0,0,1.7127581957859,37.0281173615456,2.9688427812965,1.56136794089522,1.52232739156071,1.84492397804847,2.26083960828934,2.11659672844269,2.51333182659351,0,0.722996784599558,0.884610551949874,0.485300549842228,0.441683036920787,0.484875253135222,0,0,0,0.510914110417183,4.79260498023681,1.19980546198682,2.66847476853436,0.898743836428936,0,4.14659361972453,0.347648640384553,1.02286182932132,0.41557608911912,0.486723789203273,0.101839363850316,2.98576729464223,0,0,0,0,0,0.30140963567143,0.340182495756639,0.12811372028485,0,0,0,0.189106080167819,0.351902248327898,0,0,0.348252166522167,0.61734640922383,0,0.702213187313235,0.772043721344145,1.42081749697796,0,0,0,0,0,0,0,0,0.350296027101508,0,0.164167464079095,0.56748166682099,0.146199987425332,0,0.134206418760372,0.210289948564127,0.514523061896422,2.31293148088659,0,0,0,0.128867461322093,0,0.444756087689741,0.570676878337677,0,0.164698954724011,1.25667604400135,0.795825888164603,1.16978452271472,0,1.08069024937347,0.199141273254367,0,0.114248512609729,0,0.814605311381257,0.775809948670503,0.701358198903186,2.78240763346732,0.738050739898011,0.627994911365499,0.370191491765402,0.296452627087149,0,0,0,0,0.241177159752417,0,0,0.486405680325106,0,0,0.372140947668503,0,0.252578877947112,0.179397413521912,0,4.0645701836653,0,0,0,0,0.502518772325447,0,0.390267295715598,0.472905432318573,0.664394068946325,1.59454768657487,1.96635977658886,3.10832967358612,1.73578870297814,0,0.54390568381871,2.45882136509518,3.03530420935206,0.642202359951168,0.35163505977661,0,1.00988370881749,0,0,0,0,0,0,0,0,0,0.321321316421807,0.141940085208269,0,0,0.989820737835213,0,0.242780636154981,0.302323556964751,0.565815239267694,0.295301892880773,0.614870295887855,0,0,0.356497378384721,1.8962205476149,0,0,2.04263763452273,0.18006109403131,0.517434735131018,0,0.532020700926821,0.535106452806212,1.15184314421485,1.8267896946876,0,0.21183207086382,0.441056796109924,0.32977250588296,0,0.180938774784468,0,0.164140899745061,1.1659233465194,0.556275906031529,7.86006051670122,0.619160603889667,0.370389054739423,1.69531611304222,6.15124024744613,5.49067615695654,11.8984900995699,10.7762618289217,10.0885980877229,0.954670618015114,0,0.203319467126849,0.432021363287205,0.209088296014469,0.218362563746178,0.134864346384821,0.495920734352016,0.523511883968059,1.03691978633434,2.4853572523477,0,0,0,0,0,0.168956125490778,0,0.13020438484395,0,0,0.864090018773596,15.8005560314089,0,1.95150818613172,7.27556608675652,8.23522800070415,10.530111803407,8.89446326447769,9.7475087935221,9.49084629512588,11.43102099825,9.47766140286301,14.1313927072641,16.1635893955754,30.3879945672079,0.680191150845634,0,0,0,0.19318959403219,0.187682475451182,1.28206136987086,0.214368379079066,0.501572104035363,1.12950368523413,0,0.572895513439397,1.03111909406213,0,0,0,0.45032120322422,0.453142408984205,0.51776031175182,0.31136204275253,0,0.170733605754134,0.486213434136588,0,0.551530525350042,0,0.412070114477788,0,0.505394423527595,0,0.377252682772152,1.03005658216871,0.576226371643824,0.574354689556133,0,0.811190281613988,0.77163688185482,2.06042950401653,0.441596760403192,0.685738504770831,0.532427418478012,1.1921809497366,0.726732083161643,0.282328141245992,0.507687647350059,0.365855945745545,0.526139422875686,0,0,0.593175090620871,0.197008964751127,0.409231043169689,0.77468420592983,1.15743966588685,1.24905288968973,0.701794825336225,0.214871054048298,0.191288332068843,0.441182838239031,0.695603506861264 | |||
|short_description=p1@Scml4 | |||
}} |
Latest revision as of 00:43, 26 September 2015
Short description: | p1@Scml4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Scml4_5end |
Coexpression cluster: | MCL_coexpression_mm9:40 |
Association with transcript: | 0bp_to_ENSMUST00000105495_5end |
EntrezGene: | Scml4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.15e-16 | 48 |
immune system | 1.15e-16 | 48 |
hemopoietic organ | 7.35e-16 | 29 |
immune organ | 7.35e-16 | 29 |
gland of gut | 2.78e-15 | 24 |
hematopoietic system | 9.51e-15 | 45 |
blood island | 9.51e-15 | 45 |
thymus | 1.27e-14 | 23 |
neck | 1.27e-14 | 23 |
respiratory system epithelium | 1.27e-14 | 23 |
hemolymphoid system gland | 1.27e-14 | 23 |
pharyngeal epithelium | 1.27e-14 | 23 |
thymic region | 1.27e-14 | 23 |
pharyngeal gland | 1.27e-14 | 23 |
entire pharyngeal arch endoderm | 1.27e-14 | 23 |
thymus primordium | 1.27e-14 | 23 |
early pharyngeal endoderm | 1.27e-14 | 23 |
pharynx | 1.03e-13 | 24 |
upper respiratory tract | 1.03e-13 | 24 |
chordate pharynx | 1.03e-13 | 24 |
pharyngeal arch system | 1.03e-13 | 24 |
pharyngeal region of foregut | 1.03e-13 | 24 |
mixed endoderm/mesoderm-derived structure | 1.09e-11 | 35 |
segment of respiratory tract | 2.09e-11 | 27 |
respiratory system | 5.79e-10 | 42 |
respiratory tract | 2.04e-09 | 41 |
craniocervical region | 7.99e-08 | 36 |
gland | 1.19e-07 | 65 |
endocrine gland | 7.76e-07 | 60 |