FFCP PHASE1:Mm9::chr5:74021590..74021604,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=231296 | |EntrezGene=231296 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=195 | |MCL_coexpression_id=195 | ||
|TSSclassifier=NA | |||
|UniProt=D3Z0I0 | |UniProt=D3Z0I0 | ||
|association_with_transcript=-40bp_to_ENSMUST00000152215_5end | |association_with_transcript=-40bp_to_ENSMUST00000152215_5end | ||
|cluster_id=chr5:74021590..74021604,- | |||
|description=CAGE_peak_3_at_Lrrc66_5end | |description=CAGE_peak_3_at_Lrrc66_5end | ||
|id=chr5:74021590..74021604,- | |id=chr5:74021590..74021604,- | ||
|ontology_enrichment_celltype=CL:0002563!2.49e-09!9;CL:0002251!2.49e-09!9;CL:0000239!2.20e-07!6;CL:0000677!2.20e-07!6;CL:0000212!2.20e-07!6;CL:0000584!2.20e-07!6 | |ontology_enrichment_celltype=CL:0002563!2.49e-09!9;CL:0002251!2.49e-09!9;CL:0000239!2.20e-07!6;CL:0000677!2.20e-07!6;CL:0000212!2.20e-07!6;CL:0000584!2.20e-07!6 | ||
|ontology_enrichment_celltype_v019_2=CL:0002563,6.56e-17,9;CL:0002251,6.56e-17,9;CL:0000239,3.12e-15,6;CL:0000677,3.12e-15,6;CL:0000584,3.12e-15,6;CL:0000075,5.86e-13,7;CL:0000066,8.79e-10,25;CL:0002076,1.29e-09,15;CL:0000682,2.21e-07,3;CL:0000223,6.92e-07,20 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!1.05e-17!43;UBERON:0005409!3.43e-16!59;UBERON:0000344!3.16e-15!15;UBERON:0001242!2.12e-13!13;UBERON:0000060!2.12e-13!13;UBERON:0001262!2.12e-13!13;UBERON:0004786!2.12e-13!13;UBERON:0003350!2.49e-09!9;UBERON:0004808!2.49e-09!9;UBERON:0001277!2.49e-09!9;UBERON:0001007!6.17e-08!128;UBERON:0001555!6.17e-08!128;UBERON:0007026!6.17e-08!128;UBERON:0004119!1.37e-07!130;UBERON:0000925!1.37e-07!130;UBERON:0006595!1.37e-07!130;UBERON:0004923!1.52e-07!24;UBERON:0000485!3.85e-07!11;UBERON:0004921!5.16e-07!126;UBERON:0004185!5.16e-07!126 | |ontology_enrichment_uberon=UBERON:0000160!1.05e-17!43;UBERON:0005409!3.43e-16!59;UBERON:0000344!3.16e-15!15;UBERON:0001242!2.12e-13!13;UBERON:0000060!2.12e-13!13;UBERON:0001262!2.12e-13!13;UBERON:0004786!2.12e-13!13;UBERON:0003350!2.49e-09!9;UBERON:0004808!2.49e-09!9;UBERON:0001277!2.49e-09!9;UBERON:0001007!6.17e-08!128;UBERON:0001555!6.17e-08!128;UBERON:0007026!6.17e-08!128;UBERON:0004119!1.37e-07!130;UBERON:0000925!1.37e-07!130;UBERON:0006595!1.37e-07!130;UBERON:0004923!1.52e-07!24;UBERON:0000485!3.85e-07!11;UBERON:0004921!5.16e-07!126;UBERON:0004185!5.16e-07!126 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.39e-56,31;UBERON:0005409,2.84e-44,47;UBERON:0000344,1.20e-30,15;UBERON:0001242,2.34e-26,13;UBERON:0001262,2.34e-26,13;UBERON:0004786,2.34e-26,13;UBERON:0004923,5.76e-18,24;UBERON:0003350,6.56e-17,9;UBERON:0004808,6.56e-17,9;UBERON:0001277,6.56e-17,9;UBERON:0001007,1.07e-16,116;UBERON:0001555,1.07e-16,116;UBERON:0007026,1.07e-16,116;UBERON:0004119,2.65e-16,118;UBERON:0000925,2.65e-16,118;UBERON:0006595,2.65e-16,118;UBERON:0004921,1.70e-14,114;UBERON:0000485,1.36e-13,11;UBERON:0002108,7.46e-11,4;UBERON:0000331,2.00e-08,3;UBERON:0002116,2.00e-08,3;UBERON:0001204,2.00e-08,3;UBERON:0001168,2.00e-08,3 | |||
|phase1_expression=0,3.83872948403297,3.18499467572675,9.0739263392049,5.00895729946347,2.51818907867835,1.86890112476421,0.645616617207881,0,0,0,0,0,0.0874204024189974,0,0,0,0,0,0,0,0.297872853602656,0.522399578277871,2.55987876469451,2.2940928106717,1.14846392823004,1.7230479846363,1.72376986148711,7.9809836171677,2.77233142735924,2.88249663851896,0,0,0,2.02196133825892,0.166234645358492,1.63335485009895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.725362142011344,0,0,0,0,0,0,0,0,0,0,0,0.7104801149461,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0.91347103775248,0,0,0,0,0,0.150722640552623,0,0,0,0,0,0,0,0.484875253135222,13.0474232852686,0,0,3.83185582812887,0.359445373517761,0,0.127070227073065,0,0,0,0,0,0,0,0,0,0,0.420883711772948,0,0,0,0,0,0.12811372028485,0,0.776110112217047,0,0,0,0,0,0,0,0,0,0.51469581422943,0.284163499395593,0,0,0,0,0,0,0,0,0,0,0,0,0.146199987425332,0,0,0,0,13.2167513193519,2.90895623329899,0,0,0.38660238396628,1.21010114774006,4.00280478920767,3.99473814836374,1.89811624617805,3.62337700392824,3.77002813200404,4.57599885694647,5.8489226135736,3.59527763461689,7.5648317456143,8.76221602319216,0,0,0,0,0.193952487167626,0,0,0.147610147979602,0.156998727841375,0.246794327843601,0,0.166845105716094,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03371317267288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328281799490123,4.66369338607761,0,0,0,0,0,0,0,0.509935289981566,0.69975726161829,0.276399947608848,0,0,0,0.108005340821801,0,1.09181281873089,0.674321731924103,1.07449492442937,0.785267825952089,14.5168770086808,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0.308132871494482,0.51968329191118,0.716106782669926,0.198681354781265,0.240390899039938,0,0.100966449948148,0.381034033274999,0.100826185136841,0,0,0.116876902181569,0,0,0,0,0.19318959403219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222246727801615,0,0,0.252697211763798,0,0,0.0936415074698824,0.256100609619477,0.114870937911227,0,0,0.192909220463705,0.412085900803307,0.147198920134397,0.685738504770831,0.177475806159338,0,0,0.188218760830661,0.169229215783353,0.182927972872773,0.263069711437843,0.135804113845862,0,0.118635018124174,0.29551344712669,0,0.154936841185966,0.192906610981141,0,0.467863216890817,0.429742108096597,0.191288332068843,0.220591419119515,0 | |phase1_expression=0,3.83872948403297,3.18499467572675,9.0739263392049,5.00895729946347,2.51818907867835,1.86890112476421,0.645616617207881,0,0,0,0,0,0.0874204024189974,0,0,0,0,0,0,0,0.297872853602656,0.522399578277871,2.55987876469451,2.2940928106717,1.14846392823004,1.7230479846363,1.72376986148711,7.9809836171677,2.77233142735924,2.88249663851896,0,0,0,2.02196133825892,0.166234645358492,1.63335485009895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.725362142011344,0,0,0,0,0,0,0,0,0,0,0,0.7104801149461,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0.91347103775248,0,0,0,0,0,0.150722640552623,0,0,0,0,0,0,0,0.484875253135222,13.0474232852686,0,0,3.83185582812887,0.359445373517761,0,0.127070227073065,0,0,0,0,0,0,0,0,0,0,0.420883711772948,0,0,0,0,0,0.12811372028485,0,0.776110112217047,0,0,0,0,0,0,0,0,0,0.51469581422943,0.284163499395593,0,0,0,0,0,0,0,0,0,0,0,0,0.146199987425332,0,0,0,0,13.2167513193519,2.90895623329899,0,0,0.38660238396628,1.21010114774006,4.00280478920767,3.99473814836374,1.89811624617805,3.62337700392824,3.77002813200404,4.57599885694647,5.8489226135736,3.59527763461689,7.5648317456143,8.76221602319216,0,0,0,0,0.193952487167626,0,0,0.147610147979602,0.156998727841375,0.246794327843601,0,0.166845105716094,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03371317267288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328281799490123,4.66369338607761,0,0,0,0,0,0,0,0.509935289981566,0.69975726161829,0.276399947608848,0,0,0,0.108005340821801,0,1.09181281873089,0.674321731924103,1.07449492442937,0.785267825952089,14.5168770086808,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0.308132871494482,0.51968329191118,0.716106782669926,0.198681354781265,0.240390899039938,0,0.100966449948148,0.381034033274999,0.100826185136841,0,0,0.116876902181569,0,0,0,0,0.19318959403219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222246727801615,0,0,0.252697211763798,0,0,0.0936415074698824,0.256100609619477,0.114870937911227,0,0,0.192909220463705,0.412085900803307,0.147198920134397,0.685738504770831,0.177475806159338,0,0,0.188218760830661,0.169229215783353,0.182927972872773,0.263069711437843,0.135804113845862,0,0.118635018124174,0.29551344712669,0,0.154936841185966,0.192906610981141,0,0.467863216890817,0.429742108096597,0.191288332068843,0.220591419119515,0 | ||
|short_description=p3@Lrrc66 | |short_description=p3@Lrrc66 | ||
}} | }} |
Latest revision as of 05:13, 26 September 2015
Short description: | p3@Lrrc66 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Lrrc66_5end |
Coexpression cluster: | MCL_coexpression_mm9:195 |
Association with transcript: | -40bp_to_ENSMUST00000152215_5end |
EntrezGene: | Lrrc66 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 6.56e-17 | 9 |
epithelial cell of alimentary canal | 6.56e-17 | 9 |
brush border epithelial cell | 3.12e-15 | 6 |
gut absorptive cell | 3.12e-15 | 6 |
enterocyte | 3.12e-15 | 6 |
columnar/cuboidal epithelial cell | 5.86e-13 | 7 |
epithelial cell | 8.79e-10 | 25 |
endo-epithelial cell | 1.29e-09 | 15 |
M cell of gut | 2.21e-07 | 3 |
endodermal cell | 6.92e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.39e-56 | 31 |
gastrointestinal system | 2.84e-44 | 47 |
mucosa | 1.20e-30 | 15 |
intestinal mucosa | 2.34e-26 | 13 |
wall of intestine | 2.34e-26 | 13 |
gastrointestinal system mucosa | 2.34e-26 | 13 |
organ component layer | 5.76e-18 | 24 |
epithelium of mucosa | 6.56e-17 | 9 |
gastrointestinal system epithelium | 6.56e-17 | 9 |
intestinal epithelium | 6.56e-17 | 9 |
digestive system | 1.07e-16 | 116 |
digestive tract | 1.07e-16 | 116 |
primitive gut | 1.07e-16 | 116 |
endoderm-derived structure | 2.65e-16 | 118 |
endoderm | 2.65e-16 | 118 |
presumptive endoderm | 2.65e-16 | 118 |
subdivision of digestive tract | 1.70e-14 | 114 |
simple columnar epithelium | 1.36e-13 | 11 |
small intestine | 7.46e-11 | 4 |
ileal mucosa | 2.00e-08 | 3 |
ileum | 2.00e-08 | 3 |
mucosa of small intestine | 2.00e-08 | 3 |
wall of small intestine | 2.00e-08 | 3 |