FFCP PHASE1:Mm9::chr7:51565560..51565575,+: Difference between revisions
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{{FFCP|EntrezGene=243961|HGNC=|MCL_coexpression_id=1|UniProt=D3YZU1|association_with_transcript=-47bp_to_ENSMUST00000107938_5end|description=CAGE_peak_3_at_Shank1_5end|id=chr7:51565560..51565575,+|ontology_enrichment_celltype=CL:0000117!1.43e-16!23;CL:0000337!1.43e-16!23;CL:0000540!2.14e-08!33;CL:0000047!2.14e-08!33;CL:0000031!2.14e-08!33;CL:0000404!2.14e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,2.29e-31,23;CL:0000337,2.29e-31,23;CL:0000540,7.89e-20,33;CL:0000047,7.89e-20,33;CL:0000031,7.89e-20,33;CL:0000404,7.89e-20,33;CL:0000393,8.89e-16,39;CL:0000211,8.89e-16,39;CL:0002319,1.02e-13,43;CL:0000221,2.91e-13,44;CL:0000133,2.91e-13,44;CL:0002609,5.58e-08,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.20e-22!52;UBERON:0005068!1.20e-22!52;UBERON:0006241!1.20e-22!52;UBERON:0007135!1.20e-22!52;UBERON:0002020!4.42e-22!34;UBERON:0000955!2.31e-21!50;UBERON:0006238!2.31e-21!50;UBERON:0002616!1.41e-20!49;UBERON:0000033!4.14e-19!63;UBERON:0002791!3.44e-18!29;UBERON:0003528!3.44e-18!29;UBERON:0001893!3.44e-18!29;UBERON:0001017!5.33e-18!73;UBERON:0005743!5.33e-18!73;UBERON:0002346!8.73e-18!71;UBERON:0003075!8.73e-18!71;UBERON:0007284!8.73e-18!71;UBERON:0003080!2.17e-17!40;UBERON:0000073!6.46e-17!75;UBERON:0001016!6.46e-17!75;UBERON:0003056!9.71e-17!49;UBERON:0002780!9.74e-17!39;UBERON:0001890!9.74e-17!39;UBERON:0006240!9.74e-17!39;UBERON:0004121!1.67e-13!102;UBERON:0000924!1.67e-13!102;UBERON:0006601!1.67e-13!102;UBERON:0000956!1.09e-12!21;UBERON:0001869!1.09e-12!21;UBERON:0000203!1.09e-12!21;UBERON:0007811!9.77e-11!86;UBERON:0000153!2.63e-10!94;UBERON:0002619!3.25e-10!17;UBERON:0002021!1.92e-09!10;UBERON:0000411!1.92e-09!10;UBERON:0001950!1.92e-09!10;UBERON:0002420!9.49e-07!8;UBERON:0007245!9.49e-07!8;UBERON:0010009!9.49e-07!8;UBERON:0010011!9.49e-07!8;UBERON:0000454!9.49e-07!8|ontology_enrichment_uberon_v019_2=UBERON:0002020,7.20e-44,34;UBERON:0000073,1.39e-43,54;UBERON:0001049,4.84e-40,52;UBERON:0005068,4.84e-40,52;UBERON:0006241,4.84e-40,52;UBERON:0007135,4.84e-40,52;UBERON:0001017,2.18e-38,73;UBERON:0001016,4.89e-37,75;UBERON:0003528,4.71e-36,29;UBERON:0002791,4.71e-36,29;UBERON:0001893,4.71e-36,29;UBERON:0000955,5.37e-33,47;UBERON:0006238,5.37e-33,47;UBERON:0002616,1.60e-31,46;UBERON:0002346,1.81e-30,64;UBERON:0003075,1.81e-30,64;UBERON:0007284,1.81e-30,64;UBERON:0003080,1.96e-30,40;UBERON:0002780,3.69e-29,39;UBERON:0001890,3.69e-29,39;UBERON:0006240,3.69e-29,39;UBERON:0004121,1.16e-26,95;UBERON:0000924,1.16e-26,95;UBERON:0006601,1.16e-26,95;UBERON:0010371,2.30e-25,73;UBERON:0000956,5.03e-25,21;UBERON:0001869,5.03e-25,21;UBERON:0000203,5.03e-25,21;UBERON:0003056,3.21e-23,49;UBERON:0002619,4.43e-20,17;UBERON:0010314,6.77e-18,92;UBERON:0002021,3.46e-17,10;UBERON:0000411,3.46e-17,10;UBERON:0001950,3.46e-17,10;UBERON:0000025,2.08e-12,114;UBERON:0002420,7.33e-12,8;UBERON:0007245,7.33e-12,8;UBERON:0010009,7.33e-12,8;UBERON:0010011,7.33e-12,8;UBERON:0000454,7.33e-12,8;UBERON:0004111,6.42e-11,122;UBERON:0002240,1.14e-09,6;UBERON:0005174,1.14e-09,6;UBERON:0001137,1.14e-09,6;UBERON:0003076,1.54e-09,12;UBERON:0003057,1.54e-09,12;UBERON:0001948,1.10e-08,5;UBERON:0002315,1.10e-08,5;UBERON:0000369,7.81e-08,5;UBERON:0002435,7.81e-08,5;UBERON:0000204,7.81e-08,5;UBERON:0010082,7.81e-08,5;UBERON:0011216,5.68e-07,194;UBERON:0002950,8.34e-07,4;UBERON:0001891,8.34e-07,4;UBERON:0009616,8.34e-07,4;UBERON:0010286,8.34e-07,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0.685572168028694,0,3.40173160604279,0.198581902401771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.671130424230945,0,0,0,0,0,4.65327859977075,2.64495489636016,3.1691570175309,0,0,0,0,0,0,0,2.69592992002042,2.02508907497536,3.15487442027073,7.9982275633065,7.28866185140325,1.5923803897944,4.02550978276593,2.75765635983006,3.30347642998166,16.0886045987337,13.3637683932932,3.69281605644543,7.77644970620482,5.2091337055676,6.14202597803038,5.06486349028512,7.63991238884051,9.72274332063103,8.11518580554887,5.59198337475902,0,0,0.289864488701678,0,0,0,0,0,0.140444420131752,0,0,0,0.563373679106722,0,0,0,0,0,0,0.34255163915718,0,0,0.173485326766136,0,0.230615497256059,0,0.117588707135705,0,0,0,0,0.323533699894818,0.220841518460394,0,0,3.22058876712702,7.74952815209784,0.255457055208591,0,0,0,4.19413790333504,3.20250421973039,5.02617408451458,12.5153510538439,17.6443665557928,4.98691306942944,6.16516799657479,0.407357455401265,0,0,0,0.260240885925407,0,0.180062129805349,0.753524089178575,0.680364991513279,0.512454881139399,0.562210347358373,0,0,0.378212160335639,0.879755620819744,0.219195732427575,0,0,0.205782136407943,0.199034266818493,0,0,0,0.207125772535502,0,0,0,0,0.617068451549513,0,0.268273401399619,0,0.16455984991348,0.164167464079095,0,0,0,0,13.4585567081041,4.83651678182637,0,0,0.639864751605702,0.232236671860439,0,0,0,0.190225626112559,0,0,0,0.198956472041151,0,0,0,0,0,0,1.1270773567308,0,0.387904974335251,0.140271639780637,0.189709611372772,0.29522029595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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=243961 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=D3YZU1 | |||
|association_with_transcript=-47bp_to_ENSMUST00000107938_5end | |||
|cluster_id=chr7:51565560..51565575,+ | |||
|description=CAGE_peak_3_at_Shank1_5end | |||
|id=chr7:51565560..51565575,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.43e-16!23;CL:0000337!1.43e-16!23;CL:0000540!2.14e-08!33;CL:0000047!2.14e-08!33;CL:0000031!2.14e-08!33;CL:0000404!2.14e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.29e-31,23;CL:0000337,2.29e-31,23;CL:0000540,7.89e-20,33;CL:0000047,7.89e-20,33;CL:0000031,7.89e-20,33;CL:0000404,7.89e-20,33;CL:0000393,8.89e-16,39;CL:0000211,8.89e-16,39;CL:0002319,1.02e-13,43;CL:0000221,2.91e-13,44;CL:0000133,2.91e-13,44;CL:0002609,5.58e-08,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.20e-22!52;UBERON:0005068!1.20e-22!52;UBERON:0006241!1.20e-22!52;UBERON:0007135!1.20e-22!52;UBERON:0002020!4.42e-22!34;UBERON:0000955!2.31e-21!50;UBERON:0006238!2.31e-21!50;UBERON:0002616!1.41e-20!49;UBERON:0000033!4.14e-19!63;UBERON:0002791!3.44e-18!29;UBERON:0003528!3.44e-18!29;UBERON:0001893!3.44e-18!29;UBERON:0001017!5.33e-18!73;UBERON:0005743!5.33e-18!73;UBERON:0002346!8.73e-18!71;UBERON:0003075!8.73e-18!71;UBERON:0007284!8.73e-18!71;UBERON:0003080!2.17e-17!40;UBERON:0000073!6.46e-17!75;UBERON:0001016!6.46e-17!75;UBERON:0003056!9.71e-17!49;UBERON:0002780!9.74e-17!39;UBERON:0001890!9.74e-17!39;UBERON:0006240!9.74e-17!39;UBERON:0004121!1.67e-13!102;UBERON:0000924!1.67e-13!102;UBERON:0006601!1.67e-13!102;UBERON:0000956!1.09e-12!21;UBERON:0001869!1.09e-12!21;UBERON:0000203!1.09e-12!21;UBERON:0007811!9.77e-11!86;UBERON:0000153!2.63e-10!94;UBERON:0002619!3.25e-10!17;UBERON:0002021!1.92e-09!10;UBERON:0000411!1.92e-09!10;UBERON:0001950!1.92e-09!10;UBERON:0002420!9.49e-07!8;UBERON:0007245!9.49e-07!8;UBERON:0010009!9.49e-07!8;UBERON:0010011!9.49e-07!8;UBERON:0000454!9.49e-07!8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,7.20e-44,34;UBERON:0000073,1.39e-43,54;UBERON:0001049,4.84e-40,52;UBERON:0005068,4.84e-40,52;UBERON:0006241,4.84e-40,52;UBERON:0007135,4.84e-40,52;UBERON:0001017,2.18e-38,73;UBERON:0001016,4.89e-37,75;UBERON:0003528,4.71e-36,29;UBERON:0002791,4.71e-36,29;UBERON:0001893,4.71e-36,29;UBERON:0000955,5.37e-33,47;UBERON:0006238,5.37e-33,47;UBERON:0002616,1.60e-31,46;UBERON:0002346,1.81e-30,64;UBERON:0003075,1.81e-30,64;UBERON:0007284,1.81e-30,64;UBERON:0003080,1.96e-30,40;UBERON:0002780,3.69e-29,39;UBERON:0001890,3.69e-29,39;UBERON:0006240,3.69e-29,39;UBERON:0004121,1.16e-26,95;UBERON:0000924,1.16e-26,95;UBERON:0006601,1.16e-26,95;UBERON:0010371,2.30e-25,73;UBERON:0000956,5.03e-25,21;UBERON:0001869,5.03e-25,21;UBERON:0000203,5.03e-25,21;UBERON:0003056,3.21e-23,49;UBERON:0002619,4.43e-20,17;UBERON:0010314,6.77e-18,92;UBERON:0002021,3.46e-17,10;UBERON:0000411,3.46e-17,10;UBERON:0001950,3.46e-17,10;UBERON:0000025,2.08e-12,114;UBERON:0002420,7.33e-12,8;UBERON:0007245,7.33e-12,8;UBERON:0010009,7.33e-12,8;UBERON:0010011,7.33e-12,8;UBERON:0000454,7.33e-12,8;UBERON:0004111,6.42e-11,122;UBERON:0002240,1.14e-09,6;UBERON:0005174,1.14e-09,6;UBERON:0001137,1.14e-09,6;UBERON:0003076,1.54e-09,12;UBERON:0003057,1.54e-09,12;UBERON:0001948,1.10e-08,5;UBERON:0002315,1.10e-08,5;UBERON:0000369,7.81e-08,5;UBERON:0002435,7.81e-08,5;UBERON:0000204,7.81e-08,5;UBERON:0010082,7.81e-08,5;UBERON:0011216,5.68e-07,194;UBERON:0002950,8.34e-07,4;UBERON:0001891,8.34e-07,4;UBERON:0009616,8.34e-07,4;UBERON:0010286,8.34e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0.685572168028694,0,3.40173160604279,0.198581902401771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.671130424230945,0,0,0,0,0,4.65327859977075,2.64495489636016,3.1691570175309,0,0,0,0,0,0,0,2.69592992002042,2.02508907497536,3.15487442027073,7.9982275633065,7.28866185140325,1.5923803897944,4.02550978276593,2.75765635983006,3.30347642998166,16.0886045987337,13.3637683932932,3.69281605644543,7.77644970620482,5.2091337055676,6.14202597803038,5.06486349028512,7.63991238884051,9.72274332063103,8.11518580554887,5.59198337475902,0,0,0.289864488701678,0,0,0,0,0,0.140444420131752,0,0,0,0.563373679106722,0,0,0,0,0,0,0.34255163915718,0,0,0.173485326766136,0,0.230615497256059,0,0.117588707135705,0,0,0,0,0.323533699894818,0.220841518460394,0,0,3.22058876712702,7.74952815209784,0.255457055208591,0,0,0,4.19413790333504,3.20250421973039,5.02617408451458,12.5153510538439,17.6443665557928,4.98691306942944,6.16516799657479,0.407357455401265,0,0,0,0.260240885925407,0,0.180062129805349,0.753524089178575,0.680364991513279,0.512454881139399,0.562210347358373,0,0,0.378212160335639,0.879755620819744,0.219195732427575,0,0,0.205782136407943,0.199034266818493,0,0,0,0.207125772535502,0,0,0,0,0.617068451549513,0,0.268273401399619,0,0.16455984991348,0.164167464079095,0,0,0,0,13.4585567081041,4.83651678182637,0,0,0.639864751605702,0.232236671860439,0,0,0,0.190225626112559,0,0,0,0.198956472041151,0,0,0,0,0,0,1.1270773567308,0,0.387904974335251,0.140271639780637,0.189709611372772,0.295220295959204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0.325929952884052,0,0,0,0,0,0.157635144106191,0,0.318909537314974,0,0,0,0,0,0,0,0.963303539926752,4.10240903072711,0,0,0,0,0,0,0,0,0,0,0,8.35435422696698,0,0.178065603667255,0.488660878060728,0,1.32745138339963,0,0.302323556964751,0,0.295301892880773,0,0,0,0,0,0,1.03135543248187,0,0,0,0,0.709360934569094,0.178368817602071,0.493647061806363,0.608929898229199,0,0,0,0.16488625294148,0,0.120625849856312,0.119372344003136,0,0,1.66882771809459,0,0.206386867963223,0,0,0.136694227721025,0,0,0,0,0,0.790839983952838,0.813277868507395,0.432021363287205,0.418176592028937,0,0.269728692769641,0.0826534557253359,0,0.129614973291793,0,0,0.149516546043979,0.165458490457098,0,0,0,0,0,0,0,0,0,0.405450430580328,0.205421914329655,0.25984164595559,0,0,0,0,0,0.15241361331,0,0,0,0,0,0,0,0,0,0,0,0.214368379079066,0,12.4245405375755,5.52390283808612,9.73922372846974,10.4830441229649,11.6464028361009,15.107877947794,14.1754725048679,9.00642406448441,13.5942722695261,11.9084871702919,0.103787347584177,0,0.512200817262403,0.243106717068294,1.46729213839588,1.10306105070008,0.222246727801615,0.206035057238894,0,1.01078884705519,0.25347929989024,0.565879024158229,0.749132059759059,0.768301828858431,1.09127391015665,0.952587382566147,1.27472758539341,1.15745532278223,0.824171801606613,0.883193520806384,0,0.887379030796687,0.953744759789284,0.581385666529314,0.564656282491984,1.01537529470012,0.548783918618318,0,0.407412341537585,0.561142271657738,0.355905054372522,0.689531376628944,0.409231043169689,0.619747364743864,1.15743966588685,1.24905288968973,0.935726433781634,0.644613162144895,0.382576664137687,0.220591419119515,0.231867835620421 | |||
|short_description=p3@Shank1 | |||
}} |
Latest revision as of 19:06, 26 September 2015
Short description: | p3@Shank1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Shank1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -47bp_to_ENSMUST00000107938_5end |
EntrezGene: | Shank1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.29e-31 | 23 |
neuroblast (sensu Vertebrata) | 2.29e-31 | 23 |
neuron | 7.89e-20 | 33 |
neuronal stem cell | 7.89e-20 | 33 |
neuroblast | 7.89e-20 | 33 |
electrically signaling cell | 7.89e-20 | 33 |
electrically responsive cell | 8.89e-16 | 39 |
electrically active cell | 8.89e-16 | 39 |
neural cell | 1.02e-13 | 43 |
ectodermal cell | 2.91e-13 | 44 |
neurectodermal cell | 2.91e-13 | 44 |
neuron of cerebral cortex | 5.58e-08 | 6 |