FFCP PHASE1:Mm9::chr4:155400413..155400480,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr4:155400413..155400480,+
|short_description=p1@Tnfrsf18
|description=CAGE_peak_1_at_Tnfrsf18_5end
|association_with_transcript=0bp_to_ENSMUST00000040274,ENSM...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=21936 | |EntrezGene=21936 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=467 | |||
|TSSclassifier=NA | |||
|UniProt=O35714,B1ASL6,E9PW25,Q540M6,B1ASL4 | |UniProt=O35714,B1ASL6,E9PW25,Q540M6,B1ASL4 | ||
|association_with_transcript=0bp_to_ENSMUST00000040274,ENSMUST00000122001,ENSMUST00000141260,ENSMUST00000166209,NM_009400,NM_021985,uc008wfw.1,uc008wfx.1,uc008wfy.1_5end | |||
|cluster_id=chr4:155400413..155400480,+ | |||
|description=CAGE_peak_1_at_Tnfrsf18_5end | |||
|id=chr4:155400413..155400480,+ | |||
|ontology_enrichment_celltype=CL:0000988!1.53e-11!32;CL:0002032!1.53e-11!32;CL:0000037!1.53e-11!32;CL:0000566!1.53e-11!32;CL:0000837!1.53e-11!32;CL:0002031!1.81e-10!25;CL:0000838!1.56e-09!12;CL:0000084!5.01e-09!11;CL:0000827!5.01e-09!11;CL:0000542!3.37e-08!13;CL:0000051!3.37e-08!13;CL:0000791!5.75e-08!9;CL:0000789!5.75e-08!9;CL:0002420!5.75e-08!9;CL:0002419!5.75e-08!9;CL:0000790!5.75e-08!9;CL:0000624!2.85e-07!8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,2.49e-19,32;CL:0002032,2.49e-19,32;CL:0000037,2.49e-19,32;CL:0000837,2.49e-19,32;CL:0002031,6.32e-18,25;CL:0000838,1.97e-15,12;CL:0000084,1.50e-14,11;CL:0000827,1.50e-14,11;CL:0000542,6.37e-14,13;CL:0000051,6.37e-14,13;CL:0000791,1.04e-12,9;CL:0000789,1.04e-12,9;CL:0002420,1.04e-12,9;CL:0002419,1.04e-12,9;CL:0000790,1.04e-12,9;CL:0002320,5.97e-12,46;CL:0000134,5.97e-12,46;CL:0000624,1.66e-11,8;CL:0000738,3.49e-11,17;CL:0002087,3.49e-11,17;CL:0000219,5.56e-10,54;CL:0000893,5.45e-09,6;CL:0002489,5.45e-09,6;CL:0000898,5.45e-09,6;CL:0000809,5.45e-09,6;CL:0000810,5.45e-09,6;CL:0000895,5.45e-09,6;CL:0000808,5.45e-09,6;CL:0000894,5.45e-09,6;CL:0000806,5.45e-09,6;CL:0000807,5.45e-09,6;CL:0000805,5.45e-09,6;CL:0002425,5.45e-09,6;CL:0002436,5.45e-09,6;CL:0002427,5.45e-09,6;CL:0002428,5.45e-09,6;CL:0002429,5.45e-09,6;CL:0002433,5.45e-09,6;CL:0002431,5.45e-09,6;CL:0002432,5.45e-09,6;CL:0000049,1.09e-07,19;CL:0000050,4.96e-07,9;CL:0000553,8.21e-07,6;CL:0000556,8.21e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.44e-13!48;UBERON:0002390!1.70e-12!45;UBERON:0003061!1.70e-12!45;UBERON:0004177!4.12e-11!29;UBERON:0002370!3.03e-09!23;UBERON:0000974!3.03e-09!23;UBERON:0004807!3.03e-09!23;UBERON:0005058!3.03e-09!23;UBERON:0003351!3.03e-09!23;UBERON:0009113!3.03e-09!23;UBERON:0003295!3.03e-09!23;UBERON:0009722!3.03e-09!23;UBERON:0005562!3.03e-09!23;UBERON:0007690!3.03e-09!23;UBERON:0000072!4.76e-09!27;UBERON:0006562!2.19e-08!24;UBERON:0003408!2.19e-08!24;UBERON:0001557!2.19e-08!24;UBERON:0001042!2.19e-08!24;UBERON:0008814!2.19e-08!24;UBERON:0009145!2.19e-08!24;UBERON:0000065!6.68e-08!41;UBERON:0003081!1.56e-07!88;UBERON:0001004!2.29e-07!42;UBERON:0002405!9.68e-07!70 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,8.06e-21,48;UBERON:0002405,8.06e-21,48;UBERON:0002390,1.09e-19,45;UBERON:0003061,1.09e-19,45;UBERON:0004177,4.61e-18,29;UBERON:0005057,4.61e-18,29;UBERON:0002370,5.91e-17,23;UBERON:0000974,5.91e-17,23;UBERON:0004807,5.91e-17,23;UBERON:0005058,5.91e-17,23;UBERON:0003351,5.91e-17,23;UBERON:0009113,5.91e-17,23;UBERON:0003295,5.91e-17,23;UBERON:0009722,5.91e-17,23;UBERON:0005562,5.91e-17,23;UBERON:0007690,5.91e-17,23;UBERON:0000077,3.18e-16,35;UBERON:0000072,4.62e-16,27;UBERON:0006562,5.74e-16,24;UBERON:0003408,5.74e-16,24;UBERON:0001557,5.74e-16,24;UBERON:0001042,5.74e-16,24;UBERON:0008814,5.74e-16,24;UBERON:0009145,5.74e-16,24;UBERON:0000065,5.07e-12,41;UBERON:0002384,5.97e-12,46;UBERON:0001004,1.50e-11,42;UBERON:0003081,1.23e-09,87;UBERON:0007811,1.54e-08,36;UBERON:0000926,7.57e-08,120;UBERON:0004120,7.57e-08,120;UBERON:0006603,7.57e-08,120;UBERON:0000153,5.62e-07,43 | |||
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|phase1_expression=0.960893082628764,0.348975407639361,0,0,0.500895729946347,0,0,237.199545162176,104.606020558688,176.484652846783,103.24443483998,111.760794752466,33.0417408767227,31.2090836635821,2.99798785634096,3.84703008040669,1.39912375625629,11.6721001182548,12.4774134581222,10.1853516431527,0.850432901510698,6.056748023254,4.70159620450084,0.47997726838022,2.52350209173887,0.57423196411502,0,0,0.950117097281869,0.504060259519861,0.886922042621219,4.44521471421742,1.23012957516914,0,0.866554859253824,0.831173226792462,0.612508068787107,6.69650609179052,5.4693474116666,13.6116173433188,9.41170380849623,8.87959130445979,13.5942898848723,0.377690453926732,0.304130793658544,0,0.782391344348039,0,0.219686182734472,0.388859798148567,0,0,4.53013036355888,73.2615763431458,32.9371923159615,0.257259436035947,0,0.515672092277442,0.202316460859598,0,0,2.71075625655306,0,0,0.988866362566974,0,1.79760066311043,0.768436610643109,0,0,0,0,0,0,0,0,0,0.127687338085188,0,0,0,0,0,0,0,0,0.142371680799103,0,7.57261933331841,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0.649473123033642,1.26679932737549,1.01104889002957,0.5709193985953,14.2415836005944,0.742210695324124,0.173485326766136,0,0,0.301445281105245,0,0,0,0.289198713839823,2.65383165584962,0.161766849947409,0.441683036920787,1.93950101254089,0,0,0,1.78819938646014,4.19352935770721,2.99951365496704,1.39777249780371,0,0,0,0,0,0,0.162241263067758,0,1.36847667671102,1.0108910337347,0.420883711772948,0,0,0,0.90422890701429,0.0680364991513279,0.2562274405697,0.374806898238915,0.258703370739016,0,0,0.351902248327898,0.876782929710299,0.834141747676794,0.348252166522167,1.85203922767149,0,0.702213187313235,1.02939162845886,1.13665399758237,0,0.469052119962192,0,0.473489471170421,0,0.154267112887378,0,0,0.116765342367169,0.658239399653922,0,0.0810688095458557,0,0.219550115291051,0.134206418760372,0.210289948564127,0,1.98251269790279,0.793351699990633,0,0,0.128867461322093,0,0,0.190225626112559,0.949058123089023,0.329397909448022,0,0.397912944082302,0.974820435595601,0,0.864552199498777,0.995706366271836,0,0.114248512609729,0,0.203651327845314,0.193952487167626,0.0701358198903186,0.126473074248515,0,0.156998727841375,0.123397163921801,0.592905254174298,0,0,0,0.405720242777006,0.241177159752417,0.25462585178142,0,0,0,0,0.744281895337007,0.624075346229121,0.757736633841335,0.538192240565737,0,1.10851914099963,0.947457058852424,0.162964976442026,0,0,0,0,0.585400943573396,0.630540576424764,0.221464689648775,0.797273843287435,1.96635977658886,1.55416483679306,1.73578870297814,0,0,1.47529281905711,1.10374698521893,0,0,0,0,0,0,0,0.238968797952552,0.222798674082394,0,0.404810701674894,0.584511715822624,0,0,1.27746076687442,0.35613120733451,0.325773918707152,0.329940245945071,0,0.242780636154981,0,0,0,0.307435147943927,0,0,0,0.632073515871632,1.05418608574999,0,0,0,0,0,0.354680467284547,0.356737635204141,0.164549020602121,0.913394847343798,1.40803024838226,0.63549621259146,0,13.1909002353184,3.87514624070173,4.76472106932431,6.44610657616937,5.74493149107714,0.291480836629851,0,4.10090113914846,0.619160603889667,0.740778109478847,1.31857919903284,2.46049609897845,3.66045077130436,16.3179292794101,18.3336402543992,15.2019971184866,0.954670618015114,0.158167996790568,0,0.540026704109006,0.836353184057875,0.218362563746178,0.674321731924103,0.743881101528023,1.30877970992015,0.648074866458964,0,0,0.149516546043979,0.496375471371293,0,0,0,0.234714477291508,0,0,0,0,5.37218905067903,2.02725215290164,3.18403967210964,1.81889152168913,1.9692936523423,1.78813219303138,3.846254384639,3.2491695978407,4.13962444787405,3.42930629947499,4.83965688656834,10.4279932391535,7.98558285614734,10.4020442941596,0,0,0.0897138566094757,0,0.386379188064381,2.62755465631655,1.09890974560359,2.14368379079066,1.00314420807073,0,0,0,0.171853182343688,0,0,0,0,0,0,0,0,0.341467211508268,1.21553358534147,0.209613162627982,0.367687016900028,0.44449345560323,0.206035057238894,0.320919209591815,0.505394423527595,0.50695859978048,0.377252682772152,0,0.192075457214608,0.459483751644906,0,0.115884325944855,0.192909220463705,0,0.735994600671987,0.342869252385415,0.354951612318675,0.238436189947321,0.581385666529314,0.470546902076653,0.423073039458382,0.365855945745545,0.263069711437843,0.135804113845862,0,0.237270036248348,0,0,0.309873682371932,0.771626443924566,0.499621155875892,0.935726433781634,0.429742108096597,0,0.882365676478062,1.15933917810211 | ||
|short_description=p1@Tnfrsf18 | |||
}} | }} |
Latest revision as of 20:33, 26 September 2015
Short description: | p1@Tnfrsf18 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Tnfrsf18_5end |
Coexpression cluster: | MCL_coexpression_mm9:467 |
Association with transcript: | 0bp_to_ENSMUST00000040274, ENSMUST00000122001, ENSMUST00000141260, ENSMUST00000166209, NM_009400, NM_021985, uc008wfw.1, uc008wfx.1, uc008wfy.1_5end |
EntrezGene: | Tnfrsf18 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 8.06e-21 | 48 |
immune system | 8.06e-21 | 48 |
hematopoietic system | 1.09e-19 | 45 |
blood island | 1.09e-19 | 45 |
hemopoietic organ | 4.61e-18 | 29 |
immune organ | 4.61e-18 | 29 |
thymus | 5.91e-17 | 23 |
neck | 5.91e-17 | 23 |
respiratory system epithelium | 5.91e-17 | 23 |
hemolymphoid system gland | 5.91e-17 | 23 |
pharyngeal epithelium | 5.91e-17 | 23 |
thymic region | 5.91e-17 | 23 |
pharyngeal gland | 5.91e-17 | 23 |
entire pharyngeal arch endoderm | 5.91e-17 | 23 |
thymus primordium | 5.91e-17 | 23 |
early pharyngeal endoderm | 5.91e-17 | 23 |
mixed endoderm/mesoderm-derived structure | 3.18e-16 | 35 |
segment of respiratory tract | 4.62e-16 | 27 |
pharynx | 5.74e-16 | 24 |
gland of gut | 5.74e-16 | 24 |
upper respiratory tract | 5.74e-16 | 24 |
chordate pharynx | 5.74e-16 | 24 |
pharyngeal arch system | 5.74e-16 | 24 |
pharyngeal region of foregut | 5.74e-16 | 24 |
respiratory tract | 5.07e-12 | 41 |
connective tissue | 5.97e-12 | 46 |
respiratory system | 1.50e-11 | 42 |
lateral plate mesoderm | 1.23e-09 | 87 |
craniocervical region | 1.54e-08 | 36 |
mesoderm | 7.57e-08 | 120 |
mesoderm-derived structure | 7.57e-08 | 120 |
presumptive mesoderm | 7.57e-08 | 120 |
anterior region of body | 5.62e-07 | 43 |