FFCP PHASE1:Mm9::chr8:108804944..108804958,-: Difference between revisions
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{{FFCP|EntrezGene=58994|HGNC=|MCL_coexpression_id=3650|UniProt=Q9JJY3|association_with_transcript=-66bp_to_uc009nfx.1_5end|description=CAGE_peak_5_at_Smpd3_5end|id=chr8:108804944..108804958,-|ontology_enrichment_celltype=CL:0002563!2.99e-09!9;CL:0002251!2.99e-09!9;CL:0000066!4.40e-08!25;CL:0002076!8.15e-08!15;CL:0000223!5.30e-07!20|ontology_enrichment_celltype_v019_2=CL:0002563,2.29e-15,9;CL:0002251,2.29e-15,9;CL:0000066,5.38e-11,25;CL:0002076,3.39e-10,15;CL:0000239,4.28e-10,6;CL:0000677,4.28e-10,6;CL:0000584,4.28e-10,6;CL:0000075,1.53e-08,7;CL:0000223,1.55e-08,20;CL:0002250,7.04e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005409!1.57e-20!59;UBERON:0000160!7.68e-17!43;UBERON:0000344!4.34e-15!15;UBERON:0001242!4.28e-13!13;UBERON:0000060!4.28e-13!13;UBERON:0001262!4.28e-13!13;UBERON:0004786!4.28e-13!13;UBERON:0004119!5.40e-13!130;UBERON:0000925!5.40e-13!130;UBERON:0006595!5.40e-13!130;UBERON:0001007!6.51e-13!128;UBERON:0001555!6.51e-13!128;UBERON:0007026!6.51e-13!128;UBERON:0004921!1.21e-11!126;UBERON:0004185!1.21e-11!126;UBERON:0004923!1.76e-09!24;UBERON:0003350!2.99e-09!9;UBERON:0004808!2.99e-09!9;UBERON:0001277!2.99e-09!9;UBERON:0000485!4.87e-07!11|ontology_enrichment_uberon_v019_2=UBERON:0005409,4.18e-49,47;UBERON:0000160,1.96e-44,31;UBERON:0000344,7.20e-26,15;UBERON:0001242,2.82e-22,13;UBERON:0001262,2.82e-22,13;UBERON:0004786,2.82e-22,13;UBERON:0001007,8.42e-20,116;UBERON:0001555,8.42e-20,116;UBERON:0007026,8.42e-20,116;UBERON:0004119,2.74e-19,118;UBERON:0000925,2.74e-19,118;UBERON:0006595,2.74e-19,118;UBERON:0004921,1.32e-17,114;UBERON:0004923,1.09e-16,24;UBERON:0003350,2.29e-15,9;UBERON:0004808,2.29e-15,9;UBERON:0001277,2.29e-15,9;UBERON:0000485,3.23e-12,11;UBERON:0002108,1.76e-08,4;UBERON:0000945,1.77e-07,16;UBERON:0010039,1.77e-07,16;UBERON:0000331,3.96e-07,3;UBERON:0002116,3.96e-07,3;UBERON:0001204,3.96e-07,3;UBERON:0001168,3.96e-07,3|phase1_expression=0,7.32848356042658,2.27499619694768,3.0246421130683,3.50627010962443,6.04365378882803,6.77476657727024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0992909512008853,0,8.95957567643077,7.11168771308227,5.7423196411502,6.8921919385452,6.67960821326256,7.9809836171677,9.32511480111744,13.5255611499736,0,0,0,6.64358725427932,13.7974755647549,8.77928231928187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135005938331691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860423876981386,0,0,0.649776417447669,1.79210754838934,0.842666520790511,0,0,0,0,0,0,0,0.432982082022428,0.506719730950197,1.01104889002957,2.2836775943812,0,0,0,0,0.230615497256059,0,0,0,3.95511948374998,0,0,0.161766849947409,0,0,7.45567044872489,0,0,12.0064815948038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411564272815887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.63460661282178,12.164726066523,0,0.232236671860439,3.35055399437443,3.22693639397348,3.55804870151792,4.94586627892654,8.0669940462567,4.77626968699632,2.01068167040216,4.17808591286417,4.09424582950152,5.39291645192533,9.07779809473716,7.36822711041159,0,0.114248512609729,0,0,0,0,0,0,0,0,0,0,0.196558995113203,0,0,0.241177159752417,0,0,0.648540907100142,0.549122826376163,1.43768206527355,0.372140947668503,0.624075346229121,0,0.538192240565737,0,0,0,0,0,0.234690248288502,0.167506257441816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283880170416537,0,0.162886959353576,1.15479086080775,0,0,0,0,0,0,0.516856586336442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21183207086382,0,0,0,0,0,0,4.37221254944776,0,0,0,0,0,0,0,0,0,0,4.77335309007557,0.158167996790568,1.42323626988794,4.86024033698106,7.10900206449194,5.02233896616208,8.90104686139817,6.69492991375221,3.40282724579238,4.40690909192096,0,0,0,0,0,0,0,0,0,0,0,0.288030006257865,0,0,0,0.129920822977795,0,0,0.120195449519969,0,0,0,0,0.292373642219257,0,0,0,0,0,0.167884616364078,0,0.187682475451182,5.12824547948342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170733605754134,0,0,0.367687016900028,0.222246727801615,0.618105171716683,0.320919209591815,0.505394423527595,0.50695859978048,0.188626341386076,0.37456602987953,0.320125762024346,0.287177344778066,0.476293691283074,0.115884325944855,0,1.23625770240992,0,0,0.354951612318675,0.476872379894642,0,0.282328141245992,0.423073039458382,0.365855945745545,0.263069711437843,0.407412341537585,1.68342681497322,0.118635018124174,0.29551344712669,0,0.309873682371932,0.385813221962283,0,0.233931608445408,0.429742108096597,0,0.220591419119515,0|short_description=p5@Smpd3}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=58994 | |||
|HGNC= | |||
|MCL_coexpression_id=3650 | |||
|TSSclassifier=NA | |||
|UniProt=Q9JJY3 | |||
|association_with_transcript=-66bp_to_uc009nfx.1_5end | |||
|cluster_id=chr8:108804944..108804958,- | |||
|description=CAGE_peak_5_at_Smpd3_5end | |||
|id=chr8:108804944..108804958,- | |||
|ontology_enrichment_celltype=CL:0002563!2.99e-09!9;CL:0002251!2.99e-09!9;CL:0000066!4.40e-08!25;CL:0002076!8.15e-08!15;CL:0000223!5.30e-07!20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,2.29e-15,9;CL:0002251,2.29e-15,9;CL:0000066,5.38e-11,25;CL:0002076,3.39e-10,15;CL:0000239,4.28e-10,6;CL:0000677,4.28e-10,6;CL:0000584,4.28e-10,6;CL:0000075,1.53e-08,7;CL:0000223,1.55e-08,20;CL:0002250,7.04e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!1.57e-20!59;UBERON:0000160!7.68e-17!43;UBERON:0000344!4.34e-15!15;UBERON:0001242!4.28e-13!13;UBERON:0000060!4.28e-13!13;UBERON:0001262!4.28e-13!13;UBERON:0004786!4.28e-13!13;UBERON:0004119!5.40e-13!130;UBERON:0000925!5.40e-13!130;UBERON:0006595!5.40e-13!130;UBERON:0001007!6.51e-13!128;UBERON:0001555!6.51e-13!128;UBERON:0007026!6.51e-13!128;UBERON:0004921!1.21e-11!126;UBERON:0004185!1.21e-11!126;UBERON:0004923!1.76e-09!24;UBERON:0003350!2.99e-09!9;UBERON:0004808!2.99e-09!9;UBERON:0001277!2.99e-09!9;UBERON:0000485!4.87e-07!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,4.18e-49,47;UBERON:0000160,1.96e-44,31;UBERON:0000344,7.20e-26,15;UBERON:0001242,2.82e-22,13;UBERON:0001262,2.82e-22,13;UBERON:0004786,2.82e-22,13;UBERON:0001007,8.42e-20,116;UBERON:0001555,8.42e-20,116;UBERON:0007026,8.42e-20,116;UBERON:0004119,2.74e-19,118;UBERON:0000925,2.74e-19,118;UBERON:0006595,2.74e-19,118;UBERON:0004921,1.32e-17,114;UBERON:0004923,1.09e-16,24;UBERON:0003350,2.29e-15,9;UBERON:0004808,2.29e-15,9;UBERON:0001277,2.29e-15,9;UBERON:0000485,3.23e-12,11;UBERON:0002108,1.76e-08,4;UBERON:0000945,1.77e-07,16;UBERON:0010039,1.77e-07,16;UBERON:0000331,3.96e-07,3;UBERON:0002116,3.96e-07,3;UBERON:0001204,3.96e-07,3;UBERON:0001168,3.96e-07,3 | |||
|phase1_expression=0,7.32848356042658,2.27499619694768,3.0246421130683,3.50627010962443,6.04365378882803,6.77476657727024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0992909512008853,0,8.95957567643077,7.11168771308227,5.7423196411502,6.8921919385452,6.67960821326256,7.9809836171677,9.32511480111744,13.5255611499736,0,0,0,6.64358725427932,13.7974755647549,8.77928231928187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135005938331691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860423876981386,0,0,0.649776417447669,1.79210754838934,0.842666520790511,0,0,0,0,0,0,0,0.432982082022428,0.506719730950197,1.01104889002957,2.2836775943812,0,0,0,0,0.230615497256059,0,0,0,3.95511948374998,0,0,0.161766849947409,0,0,7.45567044872489,0,0,12.0064815948038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411564272815887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.63460661282178,12.164726066523,0,0.232236671860439,3.35055399437443,3.22693639397348,3.55804870151792,4.94586627892654,8.0669940462567,4.77626968699632,2.01068167040216,4.17808591286417,4.09424582950152,5.39291645192533,9.07779809473716,7.36822711041159,0,0.114248512609729,0,0,0,0,0,0,0,0,0,0,0.196558995113203,0,0,0.241177159752417,0,0,0.648540907100142,0.549122826376163,1.43768206527355,0.372140947668503,0.624075346229121,0,0.538192240565737,0,0,0,0,0,0.234690248288502,0.167506257441816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283880170416537,0,0.162886959353576,1.15479086080775,0,0,0,0,0,0,0.516856586336442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21183207086382,0,0,0,0,0,0,4.37221254944776,0,0,0,0,0,0,0,0,0,0,4.77335309007557,0.158167996790568,1.42323626988794,4.86024033698106,7.10900206449194,5.02233896616208,8.90104686139817,6.69492991375221,3.40282724579238,4.40690909192096,0,0,0,0,0,0,0,0,0,0,0,0.288030006257865,0,0,0,0.129920822977795,0,0,0.120195449519969,0,0,0,0,0.292373642219257,0,0,0,0,0,0.167884616364078,0,0.187682475451182,5.12824547948342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170733605754134,0,0,0.367687016900028,0.222246727801615,0.618105171716683,0.320919209591815,0.505394423527595,0.50695859978048,0.188626341386076,0.37456602987953,0.320125762024346,0.287177344778066,0.476293691283074,0.115884325944855,0,1.23625770240992,0,0,0.354951612318675,0.476872379894642,0,0.282328141245992,0.423073039458382,0.365855945745545,0.263069711437843,0.407412341537585,1.68342681497322,0.118635018124174,0.29551344712669,0,0.309873682371932,0.385813221962283,0,0.233931608445408,0.429742108096597,0,0.220591419119515,0 | |||
|short_description=p5@Smpd3 | |||
}} |
Latest revision as of 08:38, 27 September 2015
Short description: | p5@Smpd3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Smpd3_5end |
Coexpression cluster: | MCL_coexpression_mm9:3650 |
Association with transcript: | -66bp_to_uc009nfx.1_5end |
EntrezGene: | Smpd3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 2.29e-15 | 9 |
epithelial cell of alimentary canal | 2.29e-15 | 9 |
epithelial cell | 5.38e-11 | 25 |
endo-epithelial cell | 3.39e-10 | 15 |
brush border epithelial cell | 4.28e-10 | 6 |
gut absorptive cell | 4.28e-10 | 6 |
enterocyte | 4.28e-10 | 6 |
columnar/cuboidal epithelial cell | 1.53e-08 | 7 |
endodermal cell | 1.55e-08 | 20 |
intestinal crypt stem cell | 7.04e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 4.18e-49 | 47 |
intestine | 1.96e-44 | 31 |
mucosa | 7.20e-26 | 15 |
intestinal mucosa | 2.82e-22 | 13 |
wall of intestine | 2.82e-22 | 13 |
gastrointestinal system mucosa | 2.82e-22 | 13 |
digestive system | 8.42e-20 | 116 |
digestive tract | 8.42e-20 | 116 |
primitive gut | 8.42e-20 | 116 |
endoderm-derived structure | 2.74e-19 | 118 |
endoderm | 2.74e-19 | 118 |
presumptive endoderm | 2.74e-19 | 118 |
subdivision of digestive tract | 1.32e-17 | 114 |
organ component layer | 1.09e-16 | 24 |
epithelium of mucosa | 2.29e-15 | 9 |
gastrointestinal system epithelium | 2.29e-15 | 9 |
intestinal epithelium | 2.29e-15 | 9 |
simple columnar epithelium | 3.23e-12 | 11 |
small intestine | 1.76e-08 | 4 |
stomach | 1.77e-07 | 16 |
food storage organ | 1.77e-07 | 16 |
ileal mucosa | 3.96e-07 | 3 |
ileum | 3.96e-07 | 3 |
mucosa of small intestine | 3.96e-07 | 3 |
wall of small intestine | 3.96e-07 | 3 |