FF:11417-118F4: Difference between revisions

Revision as of 15:13, 15 May 2017

Name:	Fibroblast - Cardiac, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12027
Sample type:	primary cells
Genomic View:	UCSC
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	heart
dev stage	20 weeks old fetus
sex	female
age	embryo 20week
cell type	fibroblast
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	1994
catalog number	CA306-R10f
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005613

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12027		CAGE		DRX008245		DRR009117

Accession ID Hg19

Library id		BAM		CTSS
CNhs12027		DRZ000542		DRZ001927

Download raw sequence, BAM & CTSS

Hg19

BAM	CTSS
[{{{hg19bam}}} download]	[{{{hg19ctss}}} donwload]

Hg38

BAM	CTSS
[{{{hg38bam}}} download]	[{{{hg38ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0863
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.234
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.0958
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.855
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.286
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0765
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.394
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.252
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.475
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.174
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0805
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.167
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.00214
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0958
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.163
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.121
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0958
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.791
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.298
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	1.005
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.898
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.87
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.973
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12027

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.741
MA0003.1	MA0003.1	0.234
MA0004.1	MA0004.1	0.845
MA0006.1	MA0006.1	0.0427
MA0007.1	MA0007.1	0.408
MA0009.1	MA0009.1	0.159
MA0014.1	MA0014.1	0.662
MA0017.1	MA0017.1	0.876
MA0018.2	MA0018.2	0.00115
MA0019.1	MA0019.1	0.126
MA0024.1	MA0024.1	1.28465e-4
MA0025.1	MA0025.1	0.324
MA0027.1	MA0027.1	0.24
MA0028.1	MA0028.1	0.533
MA0029.1	MA0029.1	0.0903
MA0030.1	MA0030.1	0.139
MA0031.1	MA0031.1	0.0223
MA0035.2	MA0035.2	0.977
MA0038.1	MA0038.1	0.155
MA0039.2	MA0039.2	0.863
MA0040.1	MA0040.1	0.609
MA0041.1	MA0041.1	0.397
MA0042.1	MA0042.1	0.817
MA0043.1	MA0043.1	9.47502e-4
MA0046.1	MA0046.1	0.463
MA0047.2	MA0047.2	0.883
MA0048.1	MA0048.1	0.209
MA0050.1	MA0050.1	0.00986
MA0051.1	MA0051.1	0.265
MA0052.1	MA0052.1	0.712
MA0055.1	MA0055.1	0.318
MA0057.1	MA0057.1	0.198
MA0058.1	MA0058.1	0.593
MA0059.1	MA0059.1	0.612
MA0060.1	MA0060.1	0.0154
MA0061.1	MA0061.1	0.562
MA0062.2	MA0062.2	0.0294
MA0065.2	MA0065.2	0.477
MA0066.1	MA0066.1	0.261
MA0067.1	MA0067.1	0.017
MA0068.1	MA0068.1	0.203
MA0069.1	MA0069.1	0.438
MA0070.1	MA0070.1	0.273
MA0071.1	MA0071.1	0.801
MA0072.1	MA0072.1	0.861
MA0073.1	MA0073.1	0.758
MA0074.1	MA0074.1	0.133
MA0076.1	MA0076.1	0.188
MA0077.1	MA0077.1	0.121
MA0078.1	MA0078.1	0.373
MA0079.2	MA0079.2	0.191
MA0080.2	MA0080.2	5.70045e-7
MA0081.1	MA0081.1	0.023
MA0083.1	MA0083.1	0.0174
MA0084.1	MA0084.1	0.43
MA0087.1	MA0087.1	0.769
MA0088.1	MA0088.1	0.845
MA0090.1	MA0090.1	0.00681
MA0091.1	MA0091.1	0.253
MA0092.1	MA0092.1	0.499
MA0093.1	MA0093.1	0.841
MA0099.2	MA0099.2	0.379
MA0100.1	MA0100.1	0.106
MA0101.1	MA0101.1	0.351
MA0102.2	MA0102.2	3.85922e-4
MA0103.1	MA0103.1	0.842
MA0104.2	MA0104.2	0.109
MA0105.1	MA0105.1	0.475
MA0106.1	MA0106.1	0.361
MA0107.1	MA0107.1	0.405
MA0108.2	MA0108.2	0.00252
MA0111.1	MA0111.1	0.0912
MA0112.2	MA0112.2	0.0225
MA0113.1	MA0113.1	0.365
MA0114.1	MA0114.1	0.269
MA0115.1	MA0115.1	0.165
MA0116.1	MA0116.1	0.792
MA0117.1	MA0117.1	0.237
MA0119.1	MA0119.1	0.642
MA0122.1	MA0122.1	0.638
MA0124.1	MA0124.1	0.112
MA0125.1	MA0125.1	0.255
MA0131.1	MA0131.1	0.0982
MA0135.1	MA0135.1	0.405
MA0136.1	MA0136.1	1.4726e-7
MA0137.2	MA0137.2	0.0749
MA0138.2	MA0138.2	0.315
MA0139.1	MA0139.1	0.48
MA0140.1	MA0140.1	0.638
MA0141.1	MA0141.1	0.202
MA0142.1	MA0142.1	0.124
MA0143.1	MA0143.1	0.371
MA0144.1	MA0144.1	0.656
MA0145.1	MA0145.1	0.36
MA0146.1	MA0146.1	0.192
MA0147.1	MA0147.1	0.207
MA0148.1	MA0148.1	0.578
MA0149.1	MA0149.1	0.763
MA0150.1	MA0150.1	0.14
MA0152.1	MA0152.1	0.417
MA0153.1	MA0153.1	0.549
MA0154.1	MA0154.1	0.415
MA0155.1	MA0155.1	0.034
MA0156.1	MA0156.1	0.00129
MA0157.1	MA0157.1	0.0289
MA0159.1	MA0159.1	0.271
MA0160.1	MA0160.1	0.503
MA0162.1	MA0162.1	0.0654
MA0163.1	MA0163.1	0.178
MA0164.1	MA0164.1	0.576
MA0258.1	MA0258.1	0.0465
MA0259.1	MA0259.1	0.276

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12027

Novel motif	Logo	P-value
1	1	0.989
10	10	0.26
100	100	0.57
101	101	0.297
102	102	0.5
103	103	0.674
104	104	0.43
105	105	0.549
106	106	0.108
107	107	0.0659
108	108	0.148
109	109	0.0586
11	11	0.34
110	110	0.672
111	111	0.743
112	112	0.597
113	113	0.0425
114	114	0.682
115	115	0.00411
116	116	0.106
117	117	0.848
118	118	0.68
119	119	0.643
12	12	0.741
120	120	0.0615
121	121	0.893
122	122	0.333
123	123	8.62972e-4
124	124	0.166
125	125	0.931
126	126	0.925
127	127	0.633
128	128	0.616
129	129	0.748
13	13	0.961
130	130	0.755
131	131	0.455
132	132	0.523
133	133	0.558
134	134	0.567
135	135	0.856
136	136	0.182
137	137	0.0904
138	138	0.445
139	139	0.999
14	14	0.568
140	140	0.497
141	141	0.342
142	142	0.418
143	143	0.0576
144	144	0.745
145	145	0.709
146	146	0.834
147	147	0.143
148	148	0.292
149	149	0.0125
15	15	0.738
150	150	0.0393
151	151	0.955
152	152	0.00532
153	153	0.335
154	154	0.586
155	155	0.31
156	156	0.696
157	157	0.376
158	158	0.038
159	159	0.875
16	16	0.084
160	160	0.334
161	161	0.406
162	162	0.485
163	163	0.812
164	164	0.238
165	165	0.208
166	166	0.717
167	167	0.668
168	168	0.528
169	169	0.0725
17	17	0.35
18	18	0.255
19	19	0.0781
2	2	0.407
20	20	0.592
21	21	0.41
22	22	0.262
23	23	0.787
24	24	0.928
25	25	0.159
26	26	0.556
27	27	0.369
28	28	0.154
29	29	0.465
3	3	0.835
30	30	0.441
31	31	0.283
32	32	6.62059e-15
33	33	0.822
34	34	0.558
35	35	0.529
36	36	0.337
37	37	0.0956
38	38	0.651
39	39	0.563
4	4	0.641
40	40	0.534
41	41	0.766
42	42	0.335
43	43	0.933
44	44	0.134
45	45	0.455
46	46	0.501
47	47	0.857
48	48	0.377
49	49	0.425
5	5	0.773
50	50	0.935
51	51	0.718
52	52	0.911
53	53	0.12
54	54	0.553
55	55	0.417
56	56	0.992
57	57	0.831
58	58	0.105
59	59	0.0421
6	6	0.912
60	60	0.898
61	61	0.778
62	62	0.279
63	63	0.768
64	64	0.766
65	65	0.372
66	66	0.623
67	67	0.839
68	68	0.481
69	69	0.196
7	7	0.326
70	70	0.639
71	71	0.79
72	72	0.357
73	73	0.00116
74	74	0.897
75	75	0.945
76	76	0.357
77	77	0.0155
78	78	0.942
79	79	1.65658e-4
8	8	0.17
80	80	0.631
81	81	0.71
82	82	0.566
83	83	0.128
84	84	0.304
85	85	0.22
86	86	0.858
87	87	0.00583
88	88	0.601
89	89	0.0169
9	9	0.913
90	90	0.0354
91	91	0.704
92	92	0.906
93	93	0.929
94	94	0.715
95	95	0.0914
96	96	0.209
97	97	0.627
98	98	0.335
99	99	0.0201

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12027

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000059 human cardiac fibroblast sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000057 (fibroblast)
0002548 (cardiac fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0002384 (connective tissue)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000059 (human cardiac fibroblast sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 13: / Line 13: @@
 |def="A fibroblast from cardiac tissue." [GOC:tfm]
 |expression_enrichment_score=chr5:172662197..172662216,-!p1@NKX2-5!2.15!140.35!NKX2-5;;chr5:172662303..172662320,-!p2@NKX2-5!1.80!61.42!NKX2-5;;chr20:30433396..30433414,-!p1@FOXS1!1.59!38.23!FOXS1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.59!37.49!ZBED1;;chr8:11561684..11561751,+!p1@GATA4!1.54!33.79!GATA4;;chr11:61520075..61520136,+!p1@C11orf9!1.44!55.25!C11orf9;;chr11:46299199..46299233,+!p1@CREB3L1!1.43!128.27!CREB3L1;;chr16:86600426..86600441,+!p1@FOXC2!1.43!63.39!FOXC2;;chr8:55370487..55370503,+!p1@SOX17!1.41!24.42!SOX17;;chr17:41739283..41739297,-!p1@MEOX1!1.28!18.25!MEOX1;;chr11:46299539..46299620,+!p2@CREB3L1!1.15!21.95!CREB3L1;;chr5:72744594..72744609,-!p1@FOXD1!1.13!57.23!FOXD1;;chr5:172662230..172662241,-!p3@NKX2-5!1.11!11.84!NKX2-5;;chr1:151032860..151032918,+!p1@MLLT11!1.10!137.89!MLLT11;;chr21:38071430..38071456,+!p1@SIM2!1.10!11.59!SIM2;;chr8:72756063..72756125,-!p1@MSC!1.08!22.20!MSC;;chr1:935467..935484,-!p1@HES4!1.06!47.36!HES4;;chr7:1577899..1577943,+!p3@MAFK!1.06!10.36!MAFK;;chr12:66218255..66218304,+!p3@HMGA2!1.05!27.63!HMGA2;;chr18:19749541..19749557,+!p1@GATA6!1.02!30.09!GATA6;;chr5:72744445..72744466,-!p2@FOXD1!1.02!16.03!FOXD1;;chr6:10412600..10412637,-!p1@TFAP2A!1.02!16.03!TFAP2A;;chr8:72756267..72756296,-!p4@MSC!1.02!14.06!MSC;;chr19:58400344..58400364,-!p2@ZNF814!1.01!13.57!ZNF814;;chr4:174451370..174451387,-!p1@HAND2!1.01!9.13!HAND2;;chr1:151032922..151032951,+!p2@MLLT11!0.98!14.55!MLLT11;;chr7:35293685..35293718,-!p1@TBX20!0.98!8.63!TBX20;;chr8:72756213..72756243,-!p5@MSC!0.95!10.36!MSC;;chr5:2751762..2751784,-!p1@IRX2!0.94!7.65!IRX2;;chr8:72756667..72756736,-!p2@MSC!0.93!11.84!MSC;;chr8:72756637..72756664,-!p3@MSC!0.93!8.63!MSC;;chr15:67418119..67418162,+!p5@SMAD3!0.93!8.39!SMAD3;;chr4:174450089..174450153,-!p2@HAND2!0.92!7.40!HAND2;;chr12:66218836..66218888,+!p1@HMGA2!0.91!69.56!HMGA2;;chr6:134210243..134210257,+!p1@TCF21!0.91!7.15!TCF21;;chr16:86600870..86600921,+!p2@FOXC2!0.90!6.91!FOXC2;;chr11:125034640..125034655,+!p1@PKNOX2!0.90!6.91!PKNOX2;;chr18:19749386..19749404,+!p2@GATA6!0.88!9.62!GATA6;;chr6:10415276..10415341,-!p2@TFAP2A!0.86!7.65!TFAP2A;;chr15:67418047..67418093,+!p4@SMAD3!0.85!7.89!SMAD3;;chr12:124873357..124873401,-!p1@NCOR2!0.84!73.75!NCOR2;;chr12:80085061..80085119,-!p6@PAWR!0.83!9.62!PAWR;;chr1:935398..935465,-!p2@HES4!0.80!11.59!HES4;;chr12:125002827..125002855,-!p5@NCOR2!0.80!7.89!NCOR2;;chr8:72756023..72756055,-!p6@MSC!0.80!6.66!MSC;;chr8:23564065..23564087,-!p1@NKX2-6!0.79!5.18!NKX2-6;;chr12:124873852..124873881,-!p3@NCOR2!0.78!33.30!NCOR2;;chr9:35732647..35732678,+!p2@CREB3!0.78!30.34!CREB3;;chr6:126240380..126240430,+!p2@NCOA7!0.75!12.83!NCOA7;;chr6:19837592..19837621,+!p1@ID4!0.74!30.09!ID4;;chr21:38071403..38071428,+!p2@SIM2!0.74!4.44!SIM2;;chr12:66218598..66218645,+!p2@HMGA2!0.72!21.71!HMGA2;;chr6:126240442..126240459,+!p4@NCOA7!0.72!5.67!NCOA7;;chr5:72744562..72744573,-!p3@FOXD1!0.72!5.43!FOXD1;;chr8:72755987..72756002,-!p7@MSC!0.72!4.19!MSC;;chr16:86601088..86601105,+!p5@FOXC2!0.72!4.19!FOXC2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.71!335.96!TAX1BP3;;chr1:151032782..151032801,+!p4@MLLT11!0.71!8.88!MLLT11;;chr7:1577111..1577132,+!p4@MAFK!0.71!4.69!MAFK;;chr16:29819446..29819471,+!p9@MAZ!0.70!13.07!MAZ;;chr7:19157248..19157268,-!p1@TWIST1!0.70!12.09!TWIST1;;chr1:151032739..151032748,+!p6@MLLT11!0.70!5.18!MLLT11;;chr20:48599506..48599526,+!p1@SNAI1!0.69!28.37!SNAI1;;chr16:86601052..86601066,+!p4@FOXC2!0.69!3.95!FOXC2;;chr8:72756380..72756427,-!p8@MSC!0.69!3.95!MSC;;chr11:46333934..46333963,+!p5@CREB3L1!0.69!3.95!CREB3L1;;chr12:80085120..80085156,-!p14@PAWR!0.69!3.95!PAWR;;chr16:67881588..67881612,-!p2@CENPT!0.68!5.43!CENPT;;chr3:71630980..71631110,-!p3@FOXP1!0.67!14.55!FOXP1;;chr11:65667884..65667895,-!p2@FOSL1!0.66!15.79!FOSL1;;chr2:239756671..239756732,+!p1@TWIST2!0.66!13.07!TWIST2;;chr7:150945754..150945789,-!p2@SMARCD3!0.65!12.09!SMARCD3;;chr15:67418177..67418204,+!p9@SMAD3!0.65!3.45!SMAD3;;chr16:86600458..86600461,+!p3@FOXC2!0.65!3.45!FOXC2;;chr16:29819403..29819442,+!p5@MAZ!0.63!32.07!MAZ;;chr19:58400372..58400411,-!p1@ZNF814!0.63!19.73!ZNF814;;chr7:19157043..19157088,-!p2@TWIST1!0.63!9.37!TWIST1;;chr8:23540441..23540466,-!p1@NKX3-1!0.63!7.15!NKX3-1;;chr9:35732514..35732530,+!p5@CREB3!0.63!4.93!CREB3;;chr5:72743793..72743855,-!p4@FOXD1!0.63!3.95!FOXD1;;chr2:121493425..121493474,+!p1@GLI2!0.62!7.89!GLI2;;chr12:66218183..66218209,+!p4@HMGA2!0.62!6.66!HMGA2;;chr18:19749517..19749531,+!p3@GATA6!0.62!6.17!GATA6;;chr2:121493492..121493537,+!p2@GLI2!0.62!5.67!GLI2;;chr1:170632285..170632309,+!p1@PRRX1!0.62!3.70!PRRX1;;chr12:66218904..66218913,+!p11@HMGA2!0.62!3.21!HMGA2;;chr1:170633348..170633399,+!p2@PRRX1!0.61!4.44!PRRX1;;chr1:170632959..170632987,+!p4@PRRX1!0.61!3.45!PRRX1;;chr17:70117153..70117174,+!p1@SOX9!0.60!37.25!SOX9;;chr12:66218212..66218244,+!p5@HMGA2!0.60!4.69!HMGA2;;chr15:67391010..67391046,+!p13@SMAD3!0.60!2.96!SMAD3;;chr17:46132044..46132080,+!p4@NFE2L1!0.60!2.96!NFE2L1;;chr8:145159846..145159889,+!p6@MAF1!0.59!4.44!MAF1;;chr15:83953397..83953425,-!p1@BNC1!0.59!3.45!BNC1;;chr1:935496..935509,-!p3@HES4!0.58!4.69!HES4;;chr19:42759266..42759290,-!p1@ERF!0.57!108.04!ERF;;chr1:170633262..170633285,+!p3@PRRX1!0.57!3.21!PRRX1;;chr6:126070769..126070801,+!p1@HEY2!0.57!3.21!HEY2;;chr19:16435705..16435726,+!p3@KLF2!0.57!2.71!KLF2;;chr12:125002861..125002894,-!p7@NCOR2!0.56!4.19!NCOR2;;chr1:23885981..23886002,-!p1@ID3!0.55!565.86!ID3;;chr20:42543441..42543497,+!p1@TOX2!0.55!14.06!TOX2;;chr19:56152332..56152347,+!p4@ZNF580!0.55!6.66!ZNF580;;chr3:168864315..168864339,-!p2@MECOM!0.55!4.69!MECOM;;chr12:66218573..66218596,+!p7@HMGA2!0.55!4.19!HMGA2;;chr20:50179368..50179392,-!p2@NFATC2!0.54!3.45!NFATC2;;chr1:170633058..170633084,+!p5@PRRX1!0.54!2.47!PRRX1;;chr11:125034605..125034636,+!p2@PKNOX2!0.54!2.47!PKNOX2;;chr11:46332679..46332695,+!p12@CREB3L1!0.54!2.47!CREB3L1;;chr11:46333979..46333991,+!p7@CREB3L1!0.54!2.47!CREB3L1;;chr16:31076332..31076388,-!p3@ZNF668!0.54!2.47!ZNF668;;chr4:2263809..2263854,-!p1@MXD4!0.53!118.89!MXD4;;chr9:35732592..35732640,+!p1@CREB3!0.53!40.21!CREB3;;chr1:37940170..37940190,+!p1@ZC3H12A!0.53!37.74!ZC3H12A;;chr19:57946684..57946723,+!p1@ZNF749!0.53!33.55!ZNF749;;chr2:74229812..74229867,+!p1@TET3!0.53!7.15!TET3;;chr12:80084167..80084197,-!p5@PAWR!0.53!6.66!PAWR;;chr17:1959369..1959388,+!p2@HIC1!0.52!7.40!HIC1;;chr1:151032833..151032850,+!p3@MLLT11!0.52!6.17!MLLT11;;chr3:52001396..52001425,-!p4@PCBP4!0.52!4.69!PCBP4;;chr17:41623009..41623053,-!p4@ETV4!0.52!4.19!ETV4;;chr6:126240356..126240379,+!p7@NCOA7!0.52!2.96!NCOA7;;chr19:49865646..49865718,-!p1@TEAD2!0.51!24.67!TEAD2;;chr3:141087393..141087426,+!p3@ZBTB38!0.51!11.10!ZBTB38;;chr17:38498594..38498661,+!p2@RARA!0.51!9.37!RARA;;chr15:61521417..61521460,-!p2@RORA!0.51!5.92!RORA;;chr7:150946015..150946070,-!p3@SMARCD3!0.51!5.67!SMARCD3;;chr12:125002739..125002756,-!p6@NCOR2!0.51!3.70!NCOR2;;chr15:61521462..61521482,-!p4@RORA!0.51!2.22!RORA;;chr17:38501500..38501517,+!p13@RARA!0.51!2.22!RARA;;chr17:46128217..46128243,+!p11@NFE2L1!0.51!2.22!NFE2L1;;chr21:38071462..38071474,+!p3@SIM2!0.51!2.22!SIM2;;chr5:3595977..3595999,+!p1@IRX1!0.51!2.22!IRX1;;chr8:72756194..72756208,-!p9@MSC!0.51!2.22!MSC;;chr3:193854202..193854232,+!p2@HES1!0.51!2.22!HES1;;chr17:1958388..1958404,+!p1@HIC1!0.50!17.76!HIC1;;chr11:65687362..65687436,+!p3@DRAP1!0.50!12.58!DRAP1;;chr19:1652555..1652568,-!p2@TCF3!0.50!11.10!TCF3;;chr17:38498510..38498540,+!p7@RARA!0.50!2.71!RARA;;chr1:935519..935532,-!p4@HES4!0.50!2.71!HES4;;chr15:37392534..37392562,-!p10@MEIS2!0.50!2.47!MEIS2;;chr12:115121962..115121987,-!p1@TBX3!0.49!23.19!TBX3;;chr19:47922750..47922795,-!p1@MEIS3!0.49!3.95!MEIS3;;chr1:8934931..8934947,-!p4@ENO1!0.48!8.39!ENO1;;chr11:65430554..65430579,-!p3@RELA!0.48!6.41!RELA;;chr19:45261992..45262010,+!p9@BCL3!0.48!3.21!BCL3;;chr6:43140149..43140177,+!p8@SRF!0.48!2.22!SRF;;chr16:29817841..29817865,+!p1@MAZ!0.47!56.98!MAZ;;chr19:52074502..52074587,+!p1@ZNF175!0.47!9.13!ZNF175;;chr2:85980951..85981004,+!p1@ATOH8!0.47!3.70!ATOH8;;chr6:45390300..45390335,+!p4@RUNX2!0.47!3.45!RUNX2;;chr12:80084137..80084165,-!p10@PAWR!0.47!2.71!PAWR;;chr12:66218923..66218934,+!p14@HMGA2!0.47!1.97!HMGA2;;chr12:80084120..80084136,-!p15@PAWR!0.47!1.97!PAWR;;chr19:47523058..47523114,+!p1@NPAS1!0.47!1.97!NPAS1;;chr5:3595934..3595957,+!p2@IRX1!0.47!1.97!IRX1;;chr5:72744336..72744359,-!p5@FOXD1!0.47!1.97!FOXD1;;chr8:40755333..40755352,-!p1@ZMAT4!0.47!1.97!ZMAT4;;chr8:72756251..72756262,-!p12@MSC!0.47!1.97!MSC;;chr16:67881647..67881663,-!p3@CENPT!0.47!1.97!CENPT;;chr16:86612320..86612394,+!p1@FOXL1!0.47!1.97!FOXL1;;chr7:4815238..4815327,+!p1@KIAA0415!0.46!56.49!AP5Z1;;chr12:57504975..57505019,-!p2@STAT6!0.46!10.11!STAT6;;chr1:23886132..23886156,-!p2@ID3!0.46!2.22!ID3;;chr7:150974206..150974255,-!p1@SMARCD3!0.45!15.29!SMARCD3;;chr3:52001426..52001447,-!p3@PCBP4!0.45!6.66!PCBP4;;chr2:239756739..239756755,+!p2@TWIST2!0.45!3.70!TWIST2;;chr1:221053049..221053075,+!p3@HLX!0.45!3.70!HLX;;chr6:43140095..43140145,+!p5@SRF!0.45!2.47!SRF;;chr8:116681108..116681120,-!p9@TRPS1!0.45!2.47!TRPS1;;chr8:49833948..49833973,-!p2@SNAI2!0.44!15.54!SNAI2;;chr2:85981222..85981259,+!p2@ATOH8!0.44!3.45!ATOH8;;chr12:80084279..80084293,-!p8@PAWR!0.44!3.45!PAWR;;chr12:66218378..66218401,+!p6@HMGA2!0.44!3.21!HMGA2;;chr12:125003087..125003141,-!p4@NCOR2!0.44!2.47!NCOR2;;chr12:66218443..66218461,+!p8@HMGA2!0.44!2.47!HMGA2;;chr5:139492456..139492489,+!p7@PURA!0.44!1.73!PURA;;chr5:92918768..92918783,+!p8@NR2F1!0.44!1.73!NR2F1;;chr6:10412576..10412599,-!p5@TFAP2A!0.44!1.73!TFAP2A;;chr7:150945663..150945692,-!p5@SMARCD3!0.44!1.73!SMARCD3;;chr7:150945865..150945896,-!p4@SMARCD3!0.44!1.73!SMARCD3;;chr22:19748231..19748317,+!p1@TBX1!0.44!1.73!TBX1;;chr18:19749504..19749515,+!p5@GATA6!0.44!1.73!GATA6;;chr19:56152361..56152434,+!p1@ZNF580!0.43!65.12!ZNF580;;chr5:92918919..92918942,+!p1@NR2F1!0.43!10.36!NR2F1;;chr2:60780607..60780624,-!p2@BCL11A!0.43!6.91!BCL11A;;chr18:3449821..3449860,+!p7@TGIF1!0.43!3.70!TGIF1;;chr6:85474299..85474324,-!p1@TBX18!0.43!3.70!TBX18;;chr3:170076314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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002548;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007100
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=

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FF:11417-118F4: Difference between revisions

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Revision as of 15:13, 15 May 2017

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0