FF:10012-101C3: Difference between revisions

Latest revision as of 12:13, 3 June 2020

Name:	brain, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10617
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	brain
dev stage	77,79,81 years old adult
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Ambion
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	0910061 -3
catalog number	Cat:AM6000 Lot:0910061 -3
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005144

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10617		CAGE		DRX008626		DRR009498

Accession ID Hg19

Library id		BAM		CTSS
CNhs10617		DRZ000923		DRZ002308

Accession ID Hg38

Library id		BAM		CTSS
CNhs10617		DRZ012273		DRZ013658

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

HumanCAGEScan Download raw sequence, BAM & CTSS

Library id		3prime-FASTQ		5prime-FASTQ		BAM		CTSS
NCig10014		download		download		download		download

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.285
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.171
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.312
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0.0385
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.161
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.496
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.137
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.264
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.264
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0.0385
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.165
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0385
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.00126
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.128
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.336
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.107
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.232
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.107
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.101
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.649
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.0385
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.14
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.47
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0739
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0385
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.107
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.521
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0385
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.395
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0627
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.456
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0385
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0.285
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.137
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.534
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.574
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.901
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.107
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.107
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.167
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0385
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.673
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.192
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0.137
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.483
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0385
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.165
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0385
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10617

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0103
MA0003.1	MA0003.1	0.372
MA0004.1	MA0004.1	0.349
MA0006.1	MA0006.1	0.408
MA0007.1	MA0007.1	0.29
MA0009.1	MA0009.1	0.161
MA0014.1	MA0014.1	0.564
MA0017.1	MA0017.1	0.00398
MA0018.2	MA0018.2	0.177
MA0019.1	MA0019.1	0.566
MA0024.1	MA0024.1	0.914
MA0025.1	MA0025.1	0.352
MA0027.1	MA0027.1	0.642
MA0028.1	MA0028.1	0.0336
MA0029.1	MA0029.1	0.0407
MA0030.1	MA0030.1	0.219
MA0031.1	MA0031.1	0.971
MA0035.2	MA0035.2	0.0293
MA0038.1	MA0038.1	0.119
MA0039.2	MA0039.2	0.11
MA0040.1	MA0040.1	0.504
MA0041.1	MA0041.1	0.23
MA0042.1	MA0042.1	0.668
MA0043.1	MA0043.1	0.894
MA0046.1	MA0046.1	0.0224
MA0047.2	MA0047.2	0.122
MA0048.1	MA0048.1	0.0521
MA0050.1	MA0050.1	0.00425
MA0051.1	MA0051.1	0.129
MA0052.1	MA0052.1	0.352
MA0055.1	MA0055.1	2.00559e-4
MA0057.1	MA0057.1	0.988
MA0058.1	MA0058.1	0.301
MA0059.1	MA0059.1	0.0701
MA0060.1	MA0060.1	0.638
MA0061.1	MA0061.1	0.00591
MA0062.2	MA0062.2	0.00168
MA0065.2	MA0065.2	0.00117
MA0066.1	MA0066.1	0.0336
MA0067.1	MA0067.1	0.798
MA0068.1	MA0068.1	0.28
MA0069.1	MA0069.1	0.543
MA0070.1	MA0070.1	0.186
MA0071.1	MA0071.1	0.0291
MA0072.1	MA0072.1	0.38
MA0073.1	MA0073.1	0.464
MA0074.1	MA0074.1	0.277
MA0076.1	MA0076.1	0.0695
MA0077.1	MA0077.1	0.2
MA0078.1	MA0078.1	0.928
MA0079.2	MA0079.2	0.493
MA0080.2	MA0080.2	7.3334e-8
MA0081.1	MA0081.1	0.0276
MA0083.1	MA0083.1	0.058
MA0084.1	MA0084.1	0.809
MA0087.1	MA0087.1	0.387
MA0088.1	MA0088.1	0.0921
MA0090.1	MA0090.1	0.237
MA0091.1	MA0091.1	0.71
MA0092.1	MA0092.1	0.419
MA0093.1	MA0093.1	0.373
MA0099.2	MA0099.2	7.17376e-14
MA0100.1	MA0100.1	0.529
MA0101.1	MA0101.1	0.00148
MA0102.2	MA0102.2	0.145
MA0103.1	MA0103.1	0.253
MA0104.2	MA0104.2	0.363
MA0105.1	MA0105.1	7.11063e-4
MA0106.1	MA0106.1	0.0255
MA0107.1	MA0107.1	0.00278
MA0108.2	MA0108.2	0.495
MA0111.1	MA0111.1	0.52
MA0112.2	MA0112.2	0.00161
MA0113.1	MA0113.1	0.405
MA0114.1	MA0114.1	0.00357
MA0115.1	MA0115.1	0.587
MA0116.1	MA0116.1	0.00608
MA0117.1	MA0117.1	0.905
MA0119.1	MA0119.1	0.0379
MA0122.1	MA0122.1	0.793
MA0124.1	MA0124.1	0.799
MA0125.1	MA0125.1	0.199
MA0131.1	MA0131.1	0.646
MA0135.1	MA0135.1	0.00628
MA0136.1	MA0136.1	9.43862e-12
MA0137.2	MA0137.2	0.743
MA0138.2	MA0138.2	0.11
MA0139.1	MA0139.1	0.458
MA0140.1	MA0140.1	0.00659
MA0141.1	MA0141.1	0.0197
MA0142.1	MA0142.1	0.893
MA0143.1	MA0143.1	0.41
MA0144.1	MA0144.1	0.553
MA0145.1	MA0145.1	0.278
MA0146.1	MA0146.1	0.00732
MA0147.1	MA0147.1	0.256
MA0148.1	MA0148.1	0.121
MA0149.1	MA0149.1	0.0141
MA0150.1	MA0150.1	5.42885e-4
MA0152.1	MA0152.1	0.865
MA0153.1	MA0153.1	0.175
MA0154.1	MA0154.1	0.0683
MA0155.1	MA0155.1	0.785
MA0156.1	MA0156.1	3.688e-7
MA0157.1	MA0157.1	0.754
MA0159.1	MA0159.1	0.00868
MA0160.1	MA0160.1	0.0362
MA0162.1	MA0162.1	0.142
MA0163.1	MA0163.1	4.56859e-6
MA0164.1	MA0164.1	0.715
MA0258.1	MA0258.1	0.0122
MA0259.1	MA0259.1	0.714

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10617

Novel motif	Logo	P-value
1	1	0.0429
10	10	0.0284
100	100	0.236
101	101	0.806
102	102	0.731
103	103	0.283
104	104	0.139
105	105	0.147
106	106	0.0801
107	107	0.18
108	108	0.903
109	109	0.00779
11	11	0.0135
110	110	0.0327
111	111	0.0633
112	112	0.525
113	113	0.662
114	114	0.123
115	115	0.583
116	116	0.208
117	117	0.00796
118	118	0.0985
119	119	0.126
12	12	0.524
120	120	0.188
121	121	0.445
122	122	0.697
123	123	0.26
124	124	0.0427
125	125	0.277
126	126	0.0393
127	127	0.545
128	128	0.272
129	129	0.524
13	13	4.20359e-4
130	130	0.371
131	131	0.0408
132	132	0.681
133	133	0.00144
134	134	0.386
135	135	0.0754
136	136	0.00548
137	137	0.865
138	138	0.827
139	139	0.12
14	14	0.782
140	140	0.138
141	141	0.377
142	142	0.82
143	143	0.0144
144	144	0.962
145	145	0.0805
146	146	0.55
147	147	0.902
148	148	0.457
149	149	0.471
15	15	0.0581
150	150	0.135
151	151	0.68
152	152	0.135
153	153	0.824
154	154	0.589
155	155	0.448
156	156	0.36
157	157	0.439
158	158	0.924
159	159	0.0935
16	16	0.0858
160	160	0.281
161	161	0.18
162	162	0.773
163	163	0.708
164	164	0.0141
165	165	0.0747
166	166	0.922
167	167	0.415
168	168	0.629
169	169	0.0102
17	17	0.17
18	18	0.282
19	19	0.252
2	2	0.913
20	20	0.0592
21	21	0.0566
22	22	0.277
23	23	0.533
24	24	0.0958
25	25	0.466
26	26	5.73358e-5
27	27	0.885
28	28	0.595
29	29	0.00891
3	3	0.0279
30	30	0.57
31	31	0.988
32	32	0.0589
33	33	0.0632
34	34	0.836
35	35	0.588
36	36	0.118
37	37	0.0349
38	38	0.33
39	39	0.298
4	4	0.794
40	40	0.0403
41	41	0.435
42	42	0.154
43	43	0.118
44	44	0.283
45	45	0.822
46	46	0.061
47	47	0.0673
48	48	0.049
49	49	0.125
5	5	0.563
50	50	0.304
51	51	0.553
52	52	0.746
53	53	0.898
54	54	0.493
55	55	0.444
56	56	0.48
57	57	0.192
58	58	0.304
59	59	0.208
6	6	0.666
60	60	0.0956
61	61	0.0637
62	62	0.203
63	63	0.16
64	64	0.204
65	65	0.326
66	66	0.175
67	67	0.343
68	68	0.237
69	69	0.547
7	7	0.0447
70	70	0.0388
71	71	0.00707
72	72	0.511
73	73	0.0362
74	74	0.762
75	75	0.025
76	76	0.263
77	77	0.262
78	78	0.00168
79	79	0.434
8	8	0.0746
80	80	0.914
81	81	0.67
82	82	0.6
83	83	0.248
84	84	0.505
85	85	0.295
86	86	0.202
87	87	0.00542
88	88	0.828
89	89	0.699
9	9	0.539
90	90	0.0749
91	91	0.558
92	92	0.574
93	93	0.973
94	94	0.0916
95	95	0.0176
96	96	0.938
97	97	0.712
98	98	0.202
99	99	0.918

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10617

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010012 human brain - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010012 (human brain - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006238 (future brain)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008518
+|DRA_sample_Accession=CAGE@SAMD00005144
-|accession_numbers=CAGE;DRX008626;DRR009498;DRZ000923;DRZ002308
+|HumanCAGEScanFiles=NCig10014;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/brain%252c%2520adult%252c%2520pool1.NCig10014.10012-101C3.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/brain%252c%2520adult%252c%2520pool1.NCig10014.10012-101C3.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/brain%252c%2520adult%252c%2520pool1.NCig10014.10012-101C3.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/brain%252c%2520adult%252c%2520pool1.NCig10014.10012-101C3.hg19.GCTATA.pairs.bed.gz
+|accession_numbers=CAGE;DRX008626;DRR009498;DRZ000923;DRZ002308;DRZ012273;DRZ013658
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0000479,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 10: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.77!592.70!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.36!230.44!OLIG1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.25!174.96!PEG3;;chr22:38380543..38380569,-!p1@SOX10!2.17!146.94!SOX10;;chr9:77112244..77112262,+!p1@RORB!2.13!147.69!RORB;;chr9:114287433..114287513,+!p1@ZNF483!1.99!241.48!ZNF483;;chr17:53342311..53342400,+!p1@HLF!1.94!97.22!HLF;;chr21:34398234..34398250,+!p1@OLIG2!1.94!86.09!OLIG2;;chr11:61520075..61520136,+!p1@C11orf9!1.93!171.71!C11orf9;;chr10:64134120..64134183,+!p1@ZNF365!1.89!90.73!ZNF365;;chr14:29235961..29236008,+!p1@FOXG1!1.84!67.81!FOXG1;;chr4:57547454..57547469,-!p1@HOPX!1.83!67.07!HOPX;;chr2:145277882..145277967,-!p3@ZEB2!1.79!101.40!ZEB2;;chr5:88178983..88179012,-!p1@MEF2C!1.78!437.40!MEF2C;;chr3:181429704..181429722,+!p1@SOX2!1.78!59.56!SOX2;;chr2:162272785..162272836,+!p1@TBR1!1.77!57.42!TBR1;;chr17:37764128..37764258,-!p1@NEUROD2!1.72!51.86!NEUROD2;;chr4:81118647..81118666,+!p1@PRDM8!1.70!63.82!PRDM8;;chr21:34442540..34442560,+!p2@OLIG1!1.69!47.96!OLIG1;;chr15:80733570..80733659,+!p2@ARNT2!1.68!47.22!ARNT2;;chr12:106976774..106976788,+!p1@RFX4!1.68!46.66!RFX4;;chr12:26277817..26277863,-!p2@BHLHE41!1.66!59.56!BHLHE41;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.66!44.90!SMARCE1;;chr15:80735246..80735321,+!p3@ARNT2!1.62!41.10!ARNT2;;chr2:166326200..166326216,+!p1@CSRNP3!1.60!55.38!CSRNP3;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.59!37.94!POU3F3;;chr8:40755333..40755352,-!p1@ZMAT4!1.59!37.76!ZMAT4;;chr8:53322304..53322340,-!p1@ST18!1.58!37.29!ST18;;chr2:2334997..2335053,-!p1@MYT1L!1.56!35.62!MYT1L;;chr19:13135582..13135600,+!p3@NFIX!1.56!35.07!NFIX;;chr16:1031762..1031781,+!p1@SOX8!1.55!34.32!SOX8;;chr18:53070846..53070902,-!p6@TCF4!1.54!33.67!TCF4;;chr5:88179017..88179046,-!p2@MEF2C!1.53!126.81!MEF2C;;chr19:13135386..13135435,+!p4@NFIX!1.51!31.36!NFIX;;chr2:60781201..60781258,-!p3@BCL11A!1.49!29.87!BCL11A;;chr10:134599649..134599653,-!p1@NKX6-2!1.49!29.87!NKX6-2;;chr3:181429741..181429767,+!p2@SOX2!1.47!28.85!SOX2;;chr19:57352109..57352153,-!p2@ZIM2!1.46!27.92!ZIM2;;chr22:41763452..41763466,+!p2@TEF!1.46!27.55!TEF;;chrX:25034067..25034088,-!p1@ARX!1.44!26.72!ARX;;chr15:80696703..80696754,+!p1@ARNT2!1.43!34.32!ARNT2;;chr14:29236269..29236285,+!p3@FOXG1!1.42!25.51!FOXG1;;chr10:48355030..48355090,+!p1@ZNF488!1.40!31.17!ZNF488;;chr2:95963052..95963106,+!p1@KCNIP3!1.40!24.12!KCNIP3;;chr7:31380292..31380351,-!p1@NEUROD6!1.39!23.47!NEUROD6;;chr12:106976678..106976708,+!p2@RFX4!1.37!22.64!RFX4;;chr10:119302232..119302265,+!p1@EMX2!1.37!22.26!EMX2;;chr1:214161272..214161322,+!p1@PROX1!1.36!30.80!PROX1;;chr11:113930425..113930471,+!p1@ZBTB16!1.33!29.41!ZBTB16;;chrX:85969626..85969664,+!p1@DACH2!1.32!19.95!DACH2;;chr14:29234581..29234601,+!p2@FOXG1!1.32!19.76!FOXG1;;chr1:151032860..151032918,+!p1@MLLT11!1.31!224.13!MLLT11;;chr17:7492684..7492778,-!p2@SOX15!1.31!40.35!SOX15;;chr4:57522166..57522260,-!p2@HOPX!1.30!21.52!HOPX;;chr9:126774018..126774055,+!p1@LHX2!1.30!18.74!LHX2;;chr12:26277956..26277980,-!p1@BHLHE41!1.29!64.84!BHLHE41;;chr11:125034640..125034655,+!p1@PKNOX2!1.28!18.18!PKNOX2;;chr2:162272889..162272915,+!p2@TBR1!1.27!17.72!TBR1;;chr8:53322347..53322378,-!p2@ST18!1.25!16.88!ST18;;chr20:62680984..62680999,-!p1@SOX18!1.23!20.97!SOX18;;chr17:70117153..70117174,+!p1@SOX9!1.20!149.82!SOX9;;chr2:166428839..166428859,+!p2@CSRNP3!1.20!14.75!CSRNP3;;chr3:141105705..141105770,+!p4@ZBTB38!1.19!17.81!ZBTB38;;chr12:54779511..54779577,-!p5@ZNF385A!1.19!14.66!ZNF385A;;chr7:63505799..63505904,+!p1@ZNF727!1.19!14.38!ZNF727;;chr14:33403881..33403924,+!p1@NPAS3!1.18!14.29!NPAS3;;chr11:8102846..8102892,+!p1@TUB!1.17!19.11!TUB;;chr11:47400078..47400106,-!p1@SPI1!1.17!13.82!SPI1;;chr19:46801639..46801699,+!p1@HIF3A!1.17!13.82!HIF3A;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.17!13.73!POU3F3;;chr21:34442584..34442587,+!p3@OLIG1!1.16!13.36!OLIG1;;chrX:118739835..118739862,-!p1@NKRF!1.15!14.56!NKRF;;chrY:21906594..21906622,-!p1@KDM5D!1.15!12.99!KDM5D;;chr9:77112225..77112238,+!p2@RORB!1.14!12.89!RORB;;chr1:151032922..151032951,+!p2@MLLT11!1.13!20.69!MLLT11;;chr14:58798013..58798071,+!p2@ARID4A!1.13!12.34!ARID4A;;chr3:126076242..126076257,-!p1@KLF15!1.12!15.21!KLF15;;chr2:145275982..145276003,-!p7@ZEB2!1.12!12.25!ZEB2;;chr1:2461692..2461710,-!p1@HES5!1.12!12.06!HES5;;chr8:145560371..145560449,-!p1@SCRT1!1.12!12.06!SCRT1;;chr6:19837592..19837621,+!p1@ID4!1.11!73.01!ID4;;chr3:24536253..24536328,-!p1@THRB!1.11!22.64!THRB;;chr12:54785074..54785122,-!p2@ZNF385A!1.11!18.55!ZNF385A;;chr5:92920256..92920282,+!p7@NR2F1!1.11!14.47!NR2F1;;chr1:244214577..244214593,+!p1@ZNF238!1.11!11.78!ZNF238;;chr11:31832658..31832681,-!p1@PAX6!1.10!11.60!PAX6;;chr2:95963120..95963136,+!p2@KCNIP3!1.10!11.50!KCNIP3;;chr19:38085768..38085821,+!p1@ZNF540!1.09!17.16!ZNF540;;chr6:126112039..126112062,+!p8@NCOA7!1.09!13.64!NCOA7;;chr19:38720294..38720348,-!p1@DPF1!1.07!13.36!DPF1;;chr2:145277640..145277771,-!p1@ZEB2!1.06!142.03!ZEB2;;chr10:38265517..38265591,-!p1@ZNF25!1.06!40.63!ZNF25;;chr2:162273241..162273253,+!p4@TBR1!1.06!10.58!TBR1;;chr16:51185172..51185197,-!p1@SALL1!1.06!10.58!SALL1;;chr4:57522598..57522664,-!p3@HOPX!1.06!10.48!HOPX;;chr8:60031682..60031710,-!p2@TOX!1.05!16.88!TOX;;chr13:100634031..100634045,+!p1@ZIC2!1.05!10.30!ZIC2;;chr15:31658288..31658338,+!p4@KLF13!1.05!10.20!KLF13;;chr19:30863271..30863338,+!p1@ZNF536!1.05!10.11!ZNF536;;chr3:141105235..141105307,+!p7@ZBTB38!1.05!10.11!ZBTB38;;chr2:60780607..60780624,-!p2@BCL11A!1.04!30.71!BCL11A;;chr10:64133862..64133884,+!p4@ZNF365!1.04!10.02!ZNF365;;chrX:118739782..118739829,-!p2@NKRF!1.03!9.65!NKRF;;chr13:45010939..45011033,-!p1@TSC22D1!1.02!632.03!TSC22D1;;chr17:38256822..38256851,-!p1@NR1D1!1.02!75.23!NR1D1;;chr11:113930291..113930339,+!p2@ZBTB16!1.02!15.68!ZBTB16;;chr10:31610110..31610159,+!p2@ZEB1!1.02!9.56!ZEB1;;chr8:22550530..22550609,-!p2@EGR3!1.02!9.46!EGR3;;chr12:26277929..26277955,-!p3@BHLHE41!1.01!13.17!BHLHE41;;chr2:192015750..192015793,-!p2@STAT4!1.01!12.52!STAT4;;chr19:7580549..7580596,+!p3@ZNF358!1.01!9.28!ZNF358;;chr19:46800289..46800327,+!p2@HIF3A!1.01!9.18!HIF3A;;chr7:28725740..28725778,+!p1@CREB5!1.00!82.56!CREB5;;chr21:39870339..39870443,-!p1@ERG!1.00!9.09!ERG;;chr6:15401104..15401166,+!p5@JARID2!1.00!8.91!JARID2;;chr2:162272716..162272753,+!p3@TBR1!1.00!8.91!TBR1;;chr17:38219209..38219230,+!p1@THRA!0.99!118.00!THRA;;chr17:17726907..17726958,-!p2@SREBF1!0.98!54.92!SREBF1;;chr17:38256877..38256900,-!p2@NR1D1!0.98!28.11!NR1D1;;chr8:145560111..145560165,-!p2@SCRT1!0.98!8.53!SCRT1;;chr19:58545454..58545498,+!p1@ZSCAN1!0.98!8.53!ZSCAN1;;chr10:64133910..64133925,+!p5@ZNF365!0.98!8.53!ZNF365;;chr19:13135731..13135787,+!p10@NFIX!0.98!8.44!NFIX;;chr3:52001396..52001425,-!p4@PCBP4!0.97!15.03!PCBP4;;chr2:166428861..166428883,+!p3@CSRNP3!0.97!8.35!CSRNP3;;chr4:26344778..26344807,+!p8@RBPJ!0.97!8.35!RBPJ;;chr12:103351444..103351461,+!p1@ASCL1!0.97!8.35!ASCL1;;chr4:26344754..26344772,+!p10@RBPJ!0.97!8.26!RBPJ;;chr20:42544782..42544828,+!p4@TOX2!0.97!8.26!TOX2;;chr6:126112074..126112144,+!p1@NCOA7!0.96!111.69!NCOA7;;chr1:61548069..61548102,+!p3@NFIA!0.96!20.32!NFIA;;chr19:13134772..13134822,+!p2@NFIX!0.96!12.06!NFIX;;chr6:143266185..143266238,-!p2@HIVEP2!0.96!11.50!HIVEP2;;chr2:68592406..68592424,+!p1@PLEK!0.96!8.16!PLEK;;chr12:103352277..103352324,+!p2@ASCL1!0.96!8.07!ASCL1;;chr10:111987079..111987115,+!p3@MXI1!0.95!10.95!MXI1;;chr18:53068911..53068935,-!p4@TCF4!0.95!9.09!TCF4;;chr11:125034605..125034636,+!p2@PKNOX2!0.95!7.89!PKNOX2;;chr1:40105299..40105326,-!p1@HEYL!0.95!7.89!HEYL;;chr17:38219143..38219154,+!p2@THRA!0.94!28.20!THRA;;chr1:8585945..8586056,-!p3@RERE!0.94!26.44!RERE;;chr2:162273254..162273267,+!p6@TBR1!0.94!7.79!TBR1;;chr3:21792682..21792720,-!p1@ZNF385D!0.94!7.79!ZNF385D;;chr2:2330039..2330072,-!p6@MYT1L!0.93!7.61!MYT1L;;chr2:2328725..2328739,-!p5@MYT1L!0.93!7.51!MYT1L;;chr2:42721205..42721307,+!p4@MTA3!0.93!7.51!MTA3;;chr3:147127142..147127168,+!p1@ZIC1!0.93!7.51!ZIC1;;chr18:53070913..53070933,-!p16@TCF4!0.93!7.51!TCF4;;chr11:31832862..31832884,-!p2@PAX6!0.93!7.51!PAX6;;chr12:26277798..26277809,-!p5@BHLHE41!0.93!7.42!BHLHE41;;chr2:180726291..180726311,-!p1@ZNF385B!0.93!7.42!ZNF385B;;chr9:126774058..126774081,+!p3@LHX2!0.93!7.42!LHX2;;chr19:13135566..13135577,+!p9@NFIX!0.93!7.42!NFIX;;chrX:106959661..106959763,-!p4@TSC22D3!0.92!22.45!TSC22D3;;chr1:151032833..151032850,+!p3@MLLT11!0.92!16.88!MLLT11;;chr1:151032782..151032801,+!p4@MLLT11!0.92!15.03!MLLT11;;chr3:126076264..126076305,-!p2@KLF15!0.92!10.30!KLF15;;chr1:151032739..151032748,+!p6@MLLT11!0.92!9.28!MLLT11;;chr11:8102819..8102845,+!p3@TUB!0.92!9.28!TUB;;chr9:126773880..126773895,+!p2@LHX2!0.92!7.33!LHX2;;chr16:51185318..51185348,-!p2@SALL1!0.92!7.33!SALL1;;chr16:85932760..85932775,+!p1@IRF8!0.92!7.33!IRF8;;chr3:24536332..24536358,-!p2@THRB!0.92!7.24!THRB;;chr2:192015701..192015743,-!p1@STAT4!0.91!9.83!STAT4;;chr10:64134045..64134083,+!p3@ZNF365!0.91!7.14!ZNF365;;chr11:113930401..113930422,+!p3@ZBTB16!0.91!7.14!ZBTB16;;chr7:150974206..150974255,-!p1@SMARCD3!0.90!45.27!SMARCD3;;chr3:18466787..18466839,-!p1@SATB1!0.90!32.75!SATB1;;chr1:164528340..164528379,+!p4@PBX1!0.90!17.72!PBX1;;chr18:52989031..52989079,-!p2@TCF4!0.90!17.07!TCF4;;chr2:2328299..2328363,-!p3@MYT1L!0.90!6.96!MYT1L;;chr12:24102576..24102623,-!p2@SOX5!0.90!6.96!SOX5;;chr19:21512202..21512225,-!p1@ZNF708!0.89!36.64!ZNF708;;chr14:21994337..21994442,-!p1@SALL2!0.89!19.48!SALL2;;chr2:178128250..178128293,-!p6@NFE2L2!0.89!17.72!NFE2L2;;chr2:162273196..162273210,+!p5@TBR1!0.89!6.68!TBR1;;chr5:88179230..88179270,-!p4@MEF2C!0.88!13.36!MEF2C;;chr14:33408072..33408114,+!p2@NPAS3!0.88!7.79!NPAS3;;chr5:138609489..138609542,+!p8@MATR3!0.88!6.59!MATR3;;chr19:53636125..53636178,-!p1@ZNF415!0.87!19.20!ZNF415;;chr7:64023410..64023428,-!p2@ZNF680!0.87!10.48!ZNF680;;chr16:79634624..79634642,-!p1@MAF!0.86!26.16!MAF;;chr19:57183114..57183145,-!p1@ZNF835!0.86!7.14!ZNF835;;chr15:80696410..80696477,+!p6@ARNT2!0.86!6.22!ARNT2;;chr22:41777927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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006238,UBERON:0010316
 |fonse_cell_line=
@@ Line 41: / Line 43: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/brain%252c%2520adult%252c%2520pool1.CNhs10617.10012-101C3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/brain%252c%2520adult%252c%2520pool1.CNhs10617.10012-101C3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/brain%252c%2520adult%252c%2520pool1.CNhs10617.10012-101C3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/brain%252c%2520adult%252c%2520pool1.CNhs10617.10012-101C3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/brain%252c%2520adult%252c%2520pool1.CNhs10617.10012-101C3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10012-101C3
 |is_a=EFO:0002091;;FF:0010012
 |is_obsolete=
 |library_id=CNhs10617
-|library_id_phase_based=1:CNhs10617
+|library_id_phase_based=2:CNhs10617
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10012
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10012
 |name=brain, adult, pool1
 |namespace=FANTOM5
@@ Line 51: / Line 62: @@
 |profile_cagescan=NCig10014,,,
 |profile_hcage=CNhs10617,LSID656,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10012-101C3;search_select_hide=table117:FF:10012-101C3
 }}

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FF:10012-101C3: Difference between revisions

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Latest revision as of 12:13, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0