FF:10020-101D2: Difference between revisions

Latest revision as of 12:14, 3 June 2020

Name:	ovary, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10626
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	ovary
dev stage	47,75,84 years old adult
sex	female
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Ambion
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	0910061 -11
catalog number	Cat:AM6000 Lot:0910061 -11
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005233

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10626		CAGE		DRX008697		DRR009569

Accession ID Hg19

Library id		BAM		CTSS
CNhs10626		DRZ000994		DRZ002379

Accession ID Hg38

Library id		BAM		CTSS
CNhs10626		DRZ012344		DRZ013729

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.116
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.334
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.513
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.259
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0315
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.0315
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.205
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0609
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.206
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.0315
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0855
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0884
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.118
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.215
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.304
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0829
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.057
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.0609
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0.0609
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0.114
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.457
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.0315
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.159
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.174
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.607
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0315
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0315
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.0315
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	3.670953e-5
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.556
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0315
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0609
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0.0315
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.139
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.0315
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.225
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0315
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.139
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.184
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0884
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.0884
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0609
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0.0884
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10626

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0144
MA0003.1	MA0003.1	0.502
MA0004.1	MA0004.1	0.185
MA0006.1	MA0006.1	0.914
MA0007.1	MA0007.1	0.286
MA0009.1	MA0009.1	0.127
MA0014.1	MA0014.1	0.293
MA0017.1	MA0017.1	0.308
MA0018.2	MA0018.2	0.388
MA0019.1	MA0019.1	0.0449
MA0024.1	MA0024.1	0.278
MA0025.1	MA0025.1	0.27
MA0027.1	MA0027.1	0.825
MA0028.1	MA0028.1	0.00641
MA0029.1	MA0029.1	0.148
MA0030.1	MA0030.1	0.00133
MA0031.1	MA0031.1	0.0468
MA0035.2	MA0035.2	0.659
MA0038.1	MA0038.1	0.397
MA0039.2	MA0039.2	0.682
MA0040.1	MA0040.1	0.704
MA0041.1	MA0041.1	0.221
MA0042.1	MA0042.1	0.427
MA0043.1	MA0043.1	0.721
MA0046.1	MA0046.1	0.0148
MA0047.2	MA0047.2	0.187
MA0048.1	MA0048.1	0.257
MA0050.1	MA0050.1	0.0208
MA0051.1	MA0051.1	0.103
MA0052.1	MA0052.1	0.0238
MA0055.1	MA0055.1	0.0515
MA0057.1	MA0057.1	0.853
MA0058.1	MA0058.1	0.13
MA0059.1	MA0059.1	0.0119
MA0060.1	MA0060.1	0.535
MA0061.1	MA0061.1	0.00516
MA0062.2	MA0062.2	1.79654e-4
MA0065.2	MA0065.2	0.0172
MA0066.1	MA0066.1	0.0633
MA0067.1	MA0067.1	0.281
MA0068.1	MA0068.1	0.00319
MA0069.1	MA0069.1	0.776
MA0070.1	MA0070.1	0.947
MA0071.1	MA0071.1	0.235
MA0072.1	MA0072.1	0.43
MA0073.1	MA0073.1	0.563
MA0074.1	MA0074.1	0.906
MA0076.1	MA0076.1	0.0316
MA0077.1	MA0077.1	0.832
MA0078.1	MA0078.1	0.154
MA0079.2	MA0079.2	0.32
MA0080.2	MA0080.2	0.0203
MA0081.1	MA0081.1	0.298
MA0083.1	MA0083.1	5.90324e-4
MA0084.1	MA0084.1	0.885
MA0087.1	MA0087.1	0.261
MA0088.1	MA0088.1	0.0366
MA0090.1	MA0090.1	0.128
MA0091.1	MA0091.1	0.639
MA0092.1	MA0092.1	0.817
MA0093.1	MA0093.1	0.225
MA0099.2	MA0099.2	2.5681e-9
MA0100.1	MA0100.1	0.548
MA0101.1	MA0101.1	0.0434
MA0102.2	MA0102.2	0.316
MA0103.1	MA0103.1	0.111
MA0104.2	MA0104.2	0.0233
MA0105.1	MA0105.1	2.35978e-8
MA0106.1	MA0106.1	0.0304
MA0107.1	MA0107.1	0.0631
MA0108.2	MA0108.2	3.46374e-11
MA0111.1	MA0111.1	0.423
MA0112.2	MA0112.2	0.00501
MA0113.1	MA0113.1	0.816
MA0114.1	MA0114.1	0.075
MA0115.1	MA0115.1	0.128
MA0116.1	MA0116.1	4.31331e-4
MA0117.1	MA0117.1	0.412
MA0119.1	MA0119.1	0.174
MA0122.1	MA0122.1	0.705
MA0124.1	MA0124.1	0.285
MA0125.1	MA0125.1	0.503
MA0131.1	MA0131.1	0.588
MA0135.1	MA0135.1	0.181
MA0136.1	MA0136.1	0.00424
MA0137.2	MA0137.2	0.001
MA0138.2	MA0138.2	0.643
MA0139.1	MA0139.1	0.529
MA0140.1	MA0140.1	0.409
MA0141.1	MA0141.1	0.106
MA0142.1	MA0142.1	0.286
MA0143.1	MA0143.1	0.321
MA0144.1	MA0144.1	0.347
MA0145.1	MA0145.1	0.87
MA0146.1	MA0146.1	0.372
MA0147.1	MA0147.1	0.0143
MA0148.1	MA0148.1	0.252
MA0149.1	MA0149.1	0.0137
MA0150.1	MA0150.1	0.00148
MA0152.1	MA0152.1	0.198
MA0153.1	MA0153.1	0.0107
MA0154.1	MA0154.1	0.014
MA0155.1	MA0155.1	0.451
MA0156.1	MA0156.1	0.0241
MA0157.1	MA0157.1	0.566
MA0159.1	MA0159.1	0.123
MA0160.1	MA0160.1	0.167
MA0162.1	MA0162.1	0.16
MA0163.1	MA0163.1	8.65375e-8
MA0164.1	MA0164.1	0.422
MA0258.1	MA0258.1	0.0276
MA0259.1	MA0259.1	0.222

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10626

Novel motif	Logo	P-value
1	1	0.0135
10	10	0.0222
100	100	0.148
101	101	0.674
102	102	0.405
103	103	0.163
104	104	0.424
105	105	0.303
106	106	0.378
107	107	0.925
108	108	0.633
109	109	0.0333
11	11	0.0298
110	110	0.143
111	111	0.00641
112	112	0.719
113	113	0.652
114	114	0.00773
115	115	0.688
116	116	0.651
117	117	0.0183
118	118	0.168
119	119	0.0554
12	12	0.657
120	120	0.0596
121	121	0.924
122	122	0.929
123	123	0.00194
124	124	0.492
125	125	0.142
126	126	0.909
127	127	0.261
128	128	0.619
129	129	0.255
13	13	0.066
130	130	0.251
131	131	0.136
132	132	0.294
133	133	0.0345
134	134	0.215
135	135	0.183
136	136	0.378
137	137	0.782
138	138	0.303
139	139	0.0623
14	14	0.734
140	140	0.212
141	141	0.479
142	142	0.787
143	143	0.00554
144	144	0.829
145	145	0.178
146	146	0.58
147	147	0.769
148	148	0.0234
149	149	0.818
15	15	0.0911
150	150	0.358
151	151	0.615
152	152	0.841
153	153	0.719
154	154	0.47
155	155	0.138
156	156	0.869
157	157	0.958
158	158	0.34
159	159	0.667
16	16	0.101
160	160	0.629
161	161	0.305
162	162	0.611
163	163	0.832
164	164	0.0869
165	165	0.769
166	166	0.751
167	167	0.0261
168	168	0.805
169	169	0.172
17	17	0.224
18	18	0.0803
19	19	0.907
2	2	0.358
20	20	0.259
21	21	0.142
22	22	0.968
23	23	0.676
24	24	0.677
25	25	0.393
26	26	0.0172
27	27	0.826
28	28	0.662
29	29	0.0159
3	3	0.0831
30	30	0.0652
31	31	0.725
32	32	0.473
33	33	0.291
34	34	0.367
35	35	0.172
36	36	0.0179
37	37	0.0794
38	38	0.332
39	39	0.566
4	4	0.341
40	40	0.0418
41	41	0.103
42	42	0.274
43	43	0.144
44	44	0.427
45	45	0.485
46	46	0.0515
47	47	0.0368
48	48	0.118
49	49	0.072
5	5	0.386
50	50	0.872
51	51	0.552
52	52	0.528
53	53	0.613
54	54	0.713
55	55	0.283
56	56	0.595
57	57	0.0613
58	58	0.322
59	59	0.771
6	6	0.587
60	60	0.649
61	61	0.473
62	62	0.135
63	63	0.248
64	64	0.14
65	65	0.305
66	66	0.0983
67	67	0.621
68	68	0.947
69	69	0.311
7	7	0.314
70	70	0.0173
71	71	0.0244
72	72	0.751
73	73	0.107
74	74	0.549
75	75	0.014
76	76	0.0956
77	77	0.796
78	78	0.0132
79	79	0.852
8	8	0.104
80	80	0.391
81	81	0.36
82	82	0.451
83	83	0.94
84	84	0.606
85	85	0.661
86	86	0.493
87	87	0.0451
88	88	0.804
89	89	0.64
9	9	0.551
90	90	0.015
91	91	0.557
92	92	0.579
93	93	0.117
94	94	0.0198
95	95	0.0154
96	96	0.501
97	97	0.634
98	98	0.0473
99	99	0.815

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10626

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010020 human ovary - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000992 (female gonad)
0000991 (gonad)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010020 (human ovary - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0009117 (indifferent gonad)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005564 (gonad primordium)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000922,UBERON:0000992,UBERON:0000991,UBERON:0003134,UBERON:0000926,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0000990,UBERON:0002050,UBERON:0005423,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0001048,UBERON:0006598,UBERON:0003886,UBERON:0004176,UBERON:0002532,UBERON:0003100,UBERON:0000474,UBERON:0009196,UBERON:0009117,UBERON:0006603,UBERON:0005564
+|DRA_sample_Accession=CAGE@SAMD00005233
+|accession_numbers=CAGE;DRX008697;DRR009569;DRZ000994;DRZ002379;DRZ012344;DRZ013729
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000992,UBERON:0000991,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0003100,UBERON:0000474
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010020
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.70!503.68!PEG3;;chr6:134210243..134210257,+!p1@TCF21!2.33!214.80!TCF21;;chrX:25034067..25034088,-!p1@ARX!2.07!116.50!ARX;;chr19:54058073..54058088,+!p1@ZNF331!2.06!114.77!ZNF331;;chr8:11561684..11561751,+!p1@GATA4!2.01!101.08!GATA4;;chr12:52445218..52445237,+!p1@NR4A1!1.95!1036.47!NR4A1;;chr2:157189180..157189290,-!p1@NR4A2!1.70!244.06!NR4A2;;chr11:32457075..32457095,-!p1@WT1!1.69!48.13!WT1;;chr12:52437488..52437507,+!p2@NR4A1!1.67!46.03!NR4A1;;chr2:27371879..27371907,+!p1@TCF23!1.67!46.03!TCF23;;chr18:19749541..19749557,+!p1@GATA6!1.66!136.36!GATA6;;chr17:53342311..53342400,+!p1@HLF!1.63!47.31!HLF;;chr3:138665937..138665968,-!p1@FOXL2!1.63!41.74!FOXL2;;chr18:19749386..19749404,+!p2@GATA6!1.61!56.71!GATA6;;chr1:40105299..40105326,-!p1@HEYL!1.60!38.36!HEYL;;chr20:62680984..62680999,-!p1@SOX18!1.56!46.40!SOX18;;chr19:54041669..54041697,+!p2@ZNF331!1.50!30.69!ZNF331;;chr9:102584159..102584174,+!p2@NR4A3!1.49!53.47!NR4A3;;chr8:55370487..55370503,+!p1@SOX17!1.47!28.35!SOX17;;chr4:174451370..174451387,-!p1@HAND2!1.47!28.28!HAND2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.46!28.13!HOXC5;;chr15:96873984..96873999,+!p3@NR2F2!1.45!193.29!NR2F2;;chr8:106330656..106330684,+!p1@ZFPM2!1.43!65.81!ZFPM2;;chr7:44143925..44143970,+!p1@AEBP1!1.42!534.75!AEBP1;;chr11:113930425..113930471,+!p1@ZBTB16!1.41!35.35!ZBTB16;;chr11:32457413..32457431,-!p2@WT1!1.39!23.47!WT1;;chr2:27371919..27371935,+!p2@TCF23!1.36!22.11!TCF23;;chr6:19837592..19837621,+!p1@ID4!1.35!128.46!ID4;;chr8:99956662..99956684,+!p1@OSR2!1.35!32.94!OSR2;;chr16:79633894..79633954,-!p3@MAF!1.34!40.16!MAF;;chr18:53068911..53068935,-!p4@TCF4!1.32!22.19!TCF4;;chr7:63505799..63505904,+!p1@ZNF727!1.32!20.08!ZNF727;;chr11:47400078..47400106,-!p1@SPI1!1.32!19.93!SPI1;;chr22:41763452..41763466,+!p2@TEF!1.32!19.71!TEF;;chr21:39870339..39870443,-!p1@ERG!1.32!19.71!ERG;;chr9:102584262..102584276,+!p1@NR4A3!1.31!43.10!NR4A3;;chr2:145277882..145277967,-!p3@ZEB2!1.31!32.94!ZEB2;;chr1:197886461..197886558,+!p1@LHX9!1.31!19.40!LHX9;;chr10:28032421..28032494,-!p2@MKX!1.30!18.88!MKX;;chr5:92919100..92919135,+!p3@NR2F1!1.29!22.49!NR2F1;;chr19:45260775..45260838,+!p5@BCL3!1.28!23.62!BCL3;;chr7:44143978..44143989,+!p2@AEBP1!1.27!31.89!AEBP1;;chr17:74137321..74137337,-!p1@FOXJ1!1.27!17.67!FOXJ1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.25!16.92!ZBED1;;chr19:46801639..46801699,+!p1@HIF3A!1.25!16.62!HIF3A;;chr15:96874012..96874042,+!p2@NR2F2!1.24!144.63!NR2F2;;chr1:170633348..170633399,+!p2@PRRX1!1.24!22.41!PRRX1;;chr11:61520075..61520136,+!p1@C11orf9!1.23!33.54!C11orf9;;chr18:19749353..19749367,+!p4@GATA6!1.23!15.87!GATA6;;chr5:92918919..92918942,+!p1@NR2F1!1.21!66.79!NR2F1;;chr20:51588873..51588953,+!p1@TSHZ2!1.21!20.08!TSHZ2;;chr1:164528410..164528428,+!p1@PBX1!1.19!108.45!PBX1;;chr3:126076242..126076257,-!p1@KLF15!1.19!17.98!KLF15;;chr11:125034640..125034655,+!p1@PKNOX2!1.19!14.37!PKNOX2;;chr12:52448338..52448401,+!p7@NR4A1!1.19!14.37!NR4A1;;chr9:114287433..114287513,+!p1@ZNF483!1.18!36.78!ZNF483;;chr1:61548069..61548102,+!p3@NFIA!1.18!33.77!NFIA;;chr17:7492684..7492778,-!p2@SOX15!1.18!29.56!SOX15;;chr2:176994408..176994492,+!p1@HOXD8!1.18!14.29!HOXD8;;chr9:127269661..127269719,-!p1@NR5A1!1.18!14.21!NR5A1;;chr2:114036488..114036504,-!p1@PAX8!1.17!13.69!PAX8;;chr13:41240737..41240787,-!p1@FOXO1!1.15!155.53!FOXO1;;chr9:102584241..102584261,+!p4@NR4A3!1.14!19.93!NR4A3;;chr11:101000537..101000553,-!p1@PGR!1.14!12.71!PGR;;chr15:96873921..96873946,+!p1@NR2F2!1.13!350.40!NR2F2;;chr18:72922811..72922827,+!p1@TSHZ1!1.13!61.37!TSHZ1;;chr10:135043702..135043729,+!p1@UTF1!1.13!12.64!UTF1;;chrX:66763856..66763896,+!p1@AR!1.12!17.52!AR;;chr11:34642612..34642646,+!p1@EHF!1.12!12.18!EHF;;chr12:52448420..52448460,+!p5@NR4A1!1.11!11.88!NR4A1;;chr2:27371866..27371878,+!p3@TCF23!1.11!11.81!TCF23;;chr6:152126790..152126828,+!p3@ESR1!1.10!11.66!ESR1;;chr1:170633058..170633084,+!p5@PRRX1!1.10!11.51!PRRX1;;chr1:61548374..61548415,+!p4@NFIA!1.09!21.28!NFIA;;chr20:2673383..2673441,+!p1@EBF4!1.09!17.98!EBF4;;chr5:92919068..92919082,+!p5@NR2F1!1.08!13.16!NR2F1;;chr6:152011654..152011682,+!p1@ESR1!1.08!11.13!ESR1;;chr1:201979743..201979762,+!p1@ELF3!1.08!10.98!ELF3;;chr2:68592406..68592424,+!p1@PLEK!1.07!10.83!PLEK;;chr11:125034605..125034636,+!p2@PKNOX2!1.07!10.83!PKNOX2;;chr5:88178983..88179012,-!p1@MEF2C!1.06!82.13!MEF2C;;chr12:54447637..54447659,+!p4@HOXC4!1.06!10.45!HOXC4;;chr4:174450089..174450153,-!p2@HAND2!1.06!10.45!HAND2;;chr19:16435625..16435682,+!p1@KLF2!1.05!331.00!KLF2;;chr12:26277956..26277980,-!p1@BHLHE41!1.05!36.85!BHLHE41;;chr3:114819124..114819200,-!p3@ZBTB20!1.05!24.14!ZBTB20;;chr1:214161272..214161322,+!p1@PROX1!1.05!14.52!PROX1;;chr12:24715376..24715432,-!p1@SOX5!1.05!12.86!SOX5;;chr13:41240717..41240735,-!p2@FOXO1!1.04!67.91!FOXO1;;chr7:44143997..44144008,+!p3@AEBP1!1.04!12.79!AEBP1;;chr6:126070769..126070801,+!p1@HEY2!1.04!11.51!HEY2;;chr6:152128810..152128827,+!p2@ESR1!1.04!9.93!ESR1;;chr1:15896975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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000991;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122
+|ffid_belonging_in_development=UBERON:0009117,UBERON:0002532,UBERON:0006603,UBERON:0005564,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/ovary%252c%2520adult%252c%2520pool1.CNhs10626.10020-101D2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/ovary%252c%2520adult%252c%2520pool1.CNhs10626.10020-101D2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/ovary%252c%2520adult%252c%2520pool1.CNhs10626.10020-101D2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/ovary%252c%2520adult%252c%2520pool1.CNhs10626.10020-101D2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/ovary%252c%2520adult%252c%2520pool1.CNhs10626.10020-101D2.hg38.nobarcode.ctss.bed.gz
 |id=FF:10020-101D2
 |is_a=EFO:0002091;;FF:0010020
 |is_obsolete=
+|library_id=CNhs10626
+|library_id_phase_based=2:CNhs10626
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10020
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10020
 |name=ovary, adult, pool1
 |namespace=FANTOM5
@@ Line 43: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10626,LSID657,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=101
 |rna_catalog_number=Cat:AM6000 Lot:0910061 -11
@@ Line 58: / Line 79: @@
 |rna_weight_ug=10
 |sample_age=
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 79: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10020-101D2;search_select_hide=table117:FF:10020-101D2
 }}

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FF:10020-101D2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:14, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0