FF:10033-101E6: Difference between revisions

Latest revision as of 12:15, 3 June 2020

Name:	pons, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10640
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	pons
dev stage	18-54 years old adult
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Clontech
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	8101345A
catalog number	Cat:636572
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004952

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10640		CAGE		DRX008711		DRR009583

Accession ID Hg19

Library id		BAM		CTSS
CNhs10640		DRZ001008		DRZ002393

Accession ID Hg38

Library id		BAM		CTSS
CNhs10640		DRZ012358		DRZ013743

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.189
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0854
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.296
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0.0806
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.149
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.445
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0286
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.207
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0286
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.0806
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.104
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.32
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0286
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0429
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.175
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.339
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0554
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0235
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0853
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.0806
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.145
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0.0286
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-1.026
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.0286
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.179
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.971
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0.0286
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.0286
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.473
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0286
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.676
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.00275
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0779
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.409
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0323
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0.765
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0.0286
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.225
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.534
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.0143
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.646
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.76
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0286
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.207
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.214
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0554
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.473
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.0806
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0.0286
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.546
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0806
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.242
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0286
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10640

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0159
MA0003.1	MA0003.1	0.337
MA0004.1	MA0004.1	0.337
MA0006.1	MA0006.1	0.441
MA0007.1	MA0007.1	0.255
MA0009.1	MA0009.1	0.201
MA0014.1	MA0014.1	0.831
MA0017.1	MA0017.1	0.00819
MA0018.2	MA0018.2	0.0493
MA0019.1	MA0019.1	0.464
MA0024.1	MA0024.1	0.854
MA0025.1	MA0025.1	0.247
MA0027.1	MA0027.1	0.506
MA0028.1	MA0028.1	0.192
MA0029.1	MA0029.1	0.161
MA0030.1	MA0030.1	0.0388
MA0031.1	MA0031.1	0.4
MA0035.2	MA0035.2	0.081
MA0038.1	MA0038.1	0.0287
MA0039.2	MA0039.2	0.516
MA0040.1	MA0040.1	0.246
MA0041.1	MA0041.1	0.157
MA0042.1	MA0042.1	0.507
MA0043.1	MA0043.1	0.327
MA0046.1	MA0046.1	0.0848
MA0047.2	MA0047.2	0.32
MA0048.1	MA0048.1	0.0621
MA0050.1	MA0050.1	0.0335
MA0051.1	MA0051.1	0.192
MA0052.1	MA0052.1	0.29
MA0055.1	MA0055.1	0.00194
MA0057.1	MA0057.1	0.874
MA0058.1	MA0058.1	0.421
MA0059.1	MA0059.1	0.0824
MA0060.1	MA0060.1	0.053
MA0061.1	MA0061.1	0.00552
MA0062.2	MA0062.2	0.0655
MA0065.2	MA0065.2	7.32435e-4
MA0066.1	MA0066.1	0.0191
MA0067.1	MA0067.1	0.482
MA0068.1	MA0068.1	0.733
MA0069.1	MA0069.1	0.556
MA0070.1	MA0070.1	0.18
MA0071.1	MA0071.1	0.0361
MA0072.1	MA0072.1	0.679
MA0073.1	MA0073.1	0.513
MA0074.1	MA0074.1	0.168
MA0076.1	MA0076.1	0.474
MA0077.1	MA0077.1	0.0888
MA0078.1	MA0078.1	0.918
MA0079.2	MA0079.2	0.342
MA0080.2	MA0080.2	8.30565e-7
MA0081.1	MA0081.1	0.117
MA0083.1	MA0083.1	0.0915
MA0084.1	MA0084.1	0.337
MA0087.1	MA0087.1	0.253
MA0088.1	MA0088.1	0.188
MA0090.1	MA0090.1	0.231
MA0091.1	MA0091.1	0.405
MA0092.1	MA0092.1	0.33
MA0093.1	MA0093.1	0.406
MA0099.2	MA0099.2	2.86734e-11
MA0100.1	MA0100.1	0.741
MA0101.1	MA0101.1	0.00533
MA0102.2	MA0102.2	0.357
MA0103.1	MA0103.1	0.159
MA0104.2	MA0104.2	0.412
MA0105.1	MA0105.1	1.1716e-4
MA0106.1	MA0106.1	0.0208
MA0107.1	MA0107.1	0.00629
MA0108.2	MA0108.2	0.494
MA0111.1	MA0111.1	0.493
MA0112.2	MA0112.2	0.00128
MA0113.1	MA0113.1	0.353
MA0114.1	MA0114.1	0.00835
MA0115.1	MA0115.1	0.714
MA0116.1	MA0116.1	0.00207
MA0117.1	MA0117.1	0.886
MA0119.1	MA0119.1	0.0509
MA0122.1	MA0122.1	0.957
MA0124.1	MA0124.1	0.629
MA0125.1	MA0125.1	0.218
MA0131.1	MA0131.1	0.954
MA0135.1	MA0135.1	0.0263
MA0136.1	MA0136.1	4.06234e-8
MA0137.2	MA0137.2	0.708
MA0138.2	MA0138.2	0.126
MA0139.1	MA0139.1	0.427
MA0140.1	MA0140.1	0.0714
MA0141.1	MA0141.1	0.0197
MA0142.1	MA0142.1	0.806
MA0143.1	MA0143.1	0.318
MA0144.1	MA0144.1	0.497
MA0145.1	MA0145.1	0.381
MA0146.1	MA0146.1	0.0215
MA0147.1	MA0147.1	0.258
MA0148.1	MA0148.1	0.3
MA0149.1	MA0149.1	0.0162
MA0150.1	MA0150.1	0.00536
MA0152.1	MA0152.1	0.967
MA0153.1	MA0153.1	0.483
MA0154.1	MA0154.1	0.028
MA0155.1	MA0155.1	0.603
MA0156.1	MA0156.1	2.64796e-4
MA0157.1	MA0157.1	0.818
MA0159.1	MA0159.1	0.00844
MA0160.1	MA0160.1	0.0829
MA0162.1	MA0162.1	0.141
MA0163.1	MA0163.1	2.39488e-7
MA0164.1	MA0164.1	0.617
MA0258.1	MA0258.1	0.0156
MA0259.1	MA0259.1	0.745

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10640

Novel motif	Logo	P-value
1	1	0.0385
10	10	0.0261
100	100	0.235
101	101	0.876
102	102	0.805
103	103	0.262
104	104	0.126
105	105	0.246
106	106	0.0292
107	107	0.0964
108	108	0.857
109	109	0.0152
11	11	0.0158
110	110	0.028
111	111	0.143
112	112	0.368
113	113	0.697
114	114	0.111
115	115	0.92
116	116	0.174
117	117	0.00803
118	118	0.12
119	119	0.156
12	12	0.745
120	120	0.12
121	121	0.986
122	122	0.579
123	123	0.627
124	124	0.022
125	125	0.237
126	126	0.0652
127	127	0.577
128	128	0.187
129	129	0.522
13	13	0.00134
130	130	0.624
131	131	0.0547
132	132	0.795
133	133	0.00546
134	134	0.261
135	135	0.0908
136	136	0.025
137	137	0.75
138	138	0.807
139	139	0.0669
14	14	0.973
140	140	0.181
141	141	0.316
142	142	0.877
143	143	0.0303
144	144	0.928
145	145	0.0595
146	146	0.663
147	147	0.783
148	148	0.155
149	149	0.253
15	15	0.0618
150	150	0.142
151	151	0.761
152	152	0.191
153	153	0.804
154	154	0.647
155	155	0.401
156	156	0.439
157	157	0.393
158	158	0.358
159	159	0.00743
16	16	0.0662
160	160	0.162
161	161	0.283
162	162	0.84
163	163	0.973
164	164	0.0083
165	165	0.221
166	166	0.853
167	167	0.357
168	168	0.667
169	169	0.0129
17	17	0.101
18	18	0.153
19	19	0.27
2	2	0.966
20	20	0.0722
21	21	0.0636
22	22	0.326
23	23	0.43
24	24	0.107
25	25	0.561
26	26	6.66356e-6
27	27	0.935
28	28	0.831
29	29	0.0122
3	3	0.045
30	30	0.63
31	31	0.909
32	32	0.0168
33	33	0.0822
34	34	0.761
35	35	0.425
36	36	0.0996
37	37	0.0583
38	38	0.379
39	39	0.222
4	4	0.96
40	40	0.0581
41	41	0.323
42	42	0.245
43	43	0.102
44	44	0.087
45	45	0.798
46	46	0.0303
47	47	0.0767
48	48	0.0605
49	49	0.156
5	5	0.645
50	50	0.353
51	51	0.464
52	52	0.667
53	53	0.963
54	54	0.503
55	55	0.344
56	56	0.541
57	57	0.233
58	58	0.361
59	59	0.102
6	6	0.798
60	60	0.0763
61	61	0.08
62	62	0.18
63	63	0.153
64	64	0.185
65	65	0.306
66	66	0.326
67	67	0.505
68	68	0.333
69	69	0.461
7	7	0.0648
70	70	0.012
71	71	0.00547
72	72	0.467
73	73	0.0775
74	74	0.734
75	75	0.0265
76	76	0.271
77	77	0.218
78	78	0.00303
79	79	0.192
8	8	0.0383
80	80	0.79
81	81	0.485
82	82	0.428
83	83	0.254
84	84	0.46
85	85	0.3
86	86	0.182
87	87	0.0128
88	88	0.831
89	89	0.388
9	9	0.494
90	90	0.0388
91	91	0.473
92	92	0.395
93	93	0.811
94	94	0.0426
95	95	0.0634
96	96	0.868
97	97	0.69
98	98	0.172
99	99	0.575

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10640

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010033 human pons - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0000988 (pons)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002680 (regional part of metencephalon)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001895 (metencephalon)
0002298 (brainstem)
0002028 (hindbrain)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010033 (human pons - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008602
+|DRA_sample_Accession=CAGE@SAMD00004952
-|accession_numbers=CAGE;DRX008711;DRR009583;DRZ001008;DRZ002393
+|accession_numbers=CAGE;DRX008711;DRR009583;DRZ001008;DRZ002393;DRZ012358;DRZ013743
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0000988,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002680,UBERON:0002616,UBERON:0004733,UBERON:0004732,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001895,UBERON:0002298,UBERON:0002028
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.62!418.63!TSC22D4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.36!229.94!PEG3;;chr21:34442439..34442455,+!p1@OLIG1!2.34!217.37!OLIG1;;chr22:38380543..38380569,-!p1@SOX10!2.28!191.67!SOX10;;chr11:61520075..61520136,+!p1@C11orf9!2.15!287.51!C11orf9;;chr8:53322304..53322340,-!p1@ST18!1.98!93.59!ST18;;chr21:34398234..34398250,+!p1@OLIG2!1.93!84.08!OLIG2;;chr1:216896752..216896778,-!p1@ESRRG!1.92!81.50!ESRRG;;chr9:114287433..114287513,+!p1@ZNF483!1.91!202.48!ZNF483;;chr4:57547454..57547469,-!p1@HOPX!1.85!70.01!HOPX;;chr2:145277882..145277967,-!p3@ZEB2!1.83!112.22!ZEB2;;chr8:40755333..40755352,-!p1@ZMAT4!1.83!67.15!ZMAT4;;chr12:26277817..26277863,-!p2@BHLHE41!1.74!72.66!BHLHE41;;chr17:37764128..37764258,-!p1@NEUROD2!1.73!52.27!NEUROD2;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.66!44.52!SMARCE1;;chr17:53342311..53342400,+!p1@HLF!1.62!46.56!HLF;;chr5:2751785..2751808,-!p2@IRX2!1.59!37.79!IRX2;;chr21:34442540..34442560,+!p2@OLIG1!1.57!36.09!OLIG1;;chr10:48355030..48355090,+!p1@ZNF488!1.55!44.25!ZNF488;;chr8:53322347..53322378,-!p2@ST18!1.54!34.05!ST18;;chr19:57352109..57352153,-!p2@ZIM2!1.51!31.61!ZIM2;;chr10:134599649..134599653,-!p1@NKX6-2!1.49!30.25!NKX6-2;;chr19:13135386..13135435,+!p4@NFIX!1.49!29.84!NFIX;;chr16:1031762..1031781,+!p1@SOX8!1.49!29.57!SOX8;;chr1:151032860..151032918,+!p1@MLLT11!1.47!326.53!MLLT11;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.47!28.62!POU3F3;;chr12:106976774..106976788,+!p1@RFX4!1.47!28.48!RFX4;;chr3:181429704..181429722,+!p1@SOX2!1.46!28.07!SOX2;;chr1:216896780..216896800,-!p2@ESRRG!1.46!27.73!ESRRG;;chr1:151032922..151032951,+!p2@MLLT11!1.43!42.28!MLLT11;;chr5:2751762..2751784,-!p1@IRX2!1.43!25.76!IRX2;;chr2:60781201..60781258,-!p3@BCL11A!1.41!24.88!BCL11A;;chr6:126112039..126112062,+!p8@NCOA7!1.40!29.09!NCOA7;;chr7:63505799..63505904,+!p1@ZNF727!1.40!24.20!ZNF727;;chr3:181429741..181429767,+!p2@SOX2!1.36!22.09!SOX2;;chr12:54447637..54447659,+!p4@HOXC4!1.36!21.75!HOXC4;;chrY:21906594..21906622,-!p1@KDM5D!1.35!21.55!KDM5D;;chr19:30863271..30863338,+!p1@ZNF536!1.35!21.41!ZNF536;;chrX:85969626..85969664,+!p1@DACH2!1.35!21.34!DACH2;;chr1:214161272..214161322,+!p1@PROX1!1.34!29.02!PROX1;;chr4:81118647..81118666,+!p1@PRDM8!1.34!27.60!PRDM8;;chr2:166326200..166326216,+!p1@CSRNP3!1.33!29.57!CSRNP3;;chr2:2334997..2335053,-!p1@MYT1L!1.33!20.32!MYT1L;;chr12:26277956..26277980,-!p1@BHLHE41!1.32!69.74!BHLHE41;;chr19:13135582..13135600,+!p3@NFIX!1.29!18.42!NFIX;;chr11:8102846..8102892,+!p1@TUB!1.28!25.35!TUB;;chr10:64134120..64134183,+!p1@ZNF365!1.28!21.75!ZNF365;;chr12:24102576..24102623,-!p2@SOX5!1.27!17.67!SOX5;;chr2:145275982..145276003,-!p7@ZEB2!1.27!17.67!ZEB2;;chr19:46801639..46801699,+!p1@HIF3A!1.26!17.06!HIF3A;;chr15:80696703..80696754,+!p1@ARNT2!1.24!21.61!ARNT2;;chr19:38085768..38085821,+!p1@ZNF540!1.23!23.86!ZNF540;;chr12:54779511..54779577,-!p5@ZNF385A!1.23!15.90!ZNF385A;;chr12:54447599..54447630,+!p3@HOXC4!1.21!18.56!HOXC4;;chr13:100634031..100634045,+!p1@ZIC2!1.21!15.29!ZIC2;;chr3:147127177..147127194,+!p2@ZIC1!1.21!15.29!ZIC1;;chr16:85932760..85932775,+!p1@IRF8!1.20!14.68!IRF8;;chr12:54785074..54785122,-!p2@ZNF385A!1.17!21.21!ZNF385A;;chr1:244214577..244214593,+!p1@ZNF238!1.17!13.93!ZNF238;;chr3:147110055..147110129,-!p1@ZIC4!1.17!13.93!ZIC4;;chr9:77112244..77112262,+!p1@RORB!1.15!14.68!RORB;;chr16:51185172..51185197,-!p1@SALL1!1.15!13.19!SALL1;;chr11:47400078..47400106,-!p1@SPI1!1.15!13.19!SPI1;;chr12:106976678..106976708,+!p2@RFX4!1.15!13.05!RFX4;;chr1:165414325..165414369,-!p1@RXRG!1.15!12.98!RXRG;;chr1:217263131..217263207,-!p4@ESRRG!1.14!12.91!ESRRG;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.14!12.85!POU3F3;;chr2:177053386..177053402,+!p1@HOXD1!1.14!12.85!HOXD1;;chr9:135457981..135458003,+!p1@BARHL1!1.13!12.64!BARHL1;;chr14:33403881..33403924,+!p1@NPAS3!1.13!12.44!NPAS3;;chrX:118739835..118739862,-!p1@NKRF!1.12!13.46!NKRF;;chrX:101975643..101975683,+!p1@BHLHB9!1.11!26.17!BHLHB9;;chr17:7492684..7492778,-!p2@SOX15!1.11!25.22!SOX15;;chr16:51185318..51185348,-!p2@SALL1!1.11!11.76!SALL1;;chr6:19837592..19837621,+!p1@ID4!1.10!71.03!ID4;;chr12:26277929..26277955,-!p3@BHLHE41!1.10!16.58!BHLHE41;;chr4:57522166..57522260,-!p2@HOPX!1.10!13.25!HOPX;;chr3:147127142..147127168,+!p1@ZIC1!1.10!11.55!ZIC1;;chr6:15401104..15401166,+!p5@JARID2!1.09!11.35!JARID2;;chr11:125034640..125034655,+!p1@PKNOX2!1.08!11.08!PKNOX2;;chr20:21494654..21494678,-!p2@NKX2-2!1.08!10.94!NKX2-2;;chr2:180726040..180726052,-!p2@ZNF385B!1.08!10.94!ZNF385B;;chr21:47063625..47063658,+!p1@PCBP3!1.07!47.85!PCBP3;;chr14:73360799..73360817,-!p1@DPF3!1.07!38.00!DPF3;;chr10:111987079..111987115,+!p3@MXI1!1.07!14.68!MXI1;;chr1:40105299..40105326,-!p1@HEYL!1.06!10.60!HEYL;;chr14:58798013..58798071,+!p2@ARID4A!1.06!10.54!ARID4A;;chr12:54447686..54447704,+!p5@HOXC4!1.06!10.40!HOXC4;;chr21:39870339..39870443,-!p1@ERG!1.05!10.26!ERG;;chr11:113930425..113930471,+!p1@ZBTB16!1.04!14.41!ZBTB16;;chr14:33408072..33408114,+!p2@NPAS3!1.04!11.96!NPAS3;;chr12:52437488..52437507,+!p2@NR4A1!1.03!9.65!NR4A1;;chr7:73038839..73038862,-!p1@MLXIPL!1.03!9.65!MLXIPL;;chr6:126112074..126112144,+!p1@NCOA7!1.02!129.89!NCOA7;;chr19:53636125..53636178,-!p1@ZNF415!1.02!27.66!ZNF415;;chr14:21994337..21994442,-!p1@SALL2!1.02!26.78!SALL2;;chr3:141105705..141105770,+!p4@ZBTB38!1.02!11.49!ZBTB38;;chr22:41763452..41763466,+!p2@TEF!1.02!9.58!TEF;;chr13:100634004..100634025,+!p2@ZIC2!1.02!9.52!ZIC2;;chr8:145560111..145560165,-!p2@SCRT1!1.02!9.52!SCRT1;;chr2:95963052..95963106,+!p1@KCNIP3!1.02!9.45!KCNIP3;;chrX:118739782..118739829,-!p2@NKRF!1.02!9.45!NKRF;;chr2:145277640..145277771,-!p1@ZEB2!1.01!126.90!ZEB2;;chr7:28725740..28725778,+!p1@CREB5!1.01!85.03!CREB5;;chr20:62680984..62680999,-!p1@SOX18!1.01!12.30!SOX18;;chr8:145560371..145560449,-!p1@SCRT1!1.01!9.31!SCRT1;;chr2:68592406..68592424,+!p1@PLEK!1.01!9.31!PLEK;;chr5:3595977..3595999,+!p1@IRX1!1.01!9.24!IRX1;;chr8:106330656..106330684,+!p1@ZFPM2!1.00!24.13!ZFPM2;;chr1:61548069..61548102,+!p3@NFIA!1.00!21.95!NFIA;;chr8:106330696..106330719,+!p2@ZFPM2!1.00!11.49!ZFPM2;;chr13:72441315..72441454,-!p1@DACH1!0.99!17.88!DACH1;;chr3:52001396..52001425,-!p4@PCBP4!0.99!15.77!PCBP4;;chr5:71803177..71803255,-!p1@ZNF366!0.99!8.70!ZNF366;;chr6:126070769..126070801,+!p1@HEY2!0.98!9.86!HEY2;;chr2:95963120..95963136,+!p2@KCNIP3!0.97!8.43!KCNIP3;;chr4:26344754..26344772,+!p10@RBPJ!0.97!8.36!RBPJ;;chr18:53070846..53070902,-!p6@TCF4!0.97!8.29!TCF4;;chr17:46132044..46132080,+!p4@NFE2L1!0.96!8.16!NFE2L1;;chr19:58545454..58545498,+!p1@ZSCAN1!0.96!8.16!ZSCAN1;;chr1:216896801..216896812,-!p5@ESRRG!0.96!8.09!ESRRG;;chr7:27170359..27170381,-!p1@HOXA4!0.96!8.02!HOXA4;;chr19:13134772..13134822,+!p2@NFIX!0.95!11.96!NFIX;;chr11:8102819..8102845,+!p3@TUB!0.95!9.99!TUB;;chr19:21512202..21512225,-!p1@ZNF708!0.94!41.26!ZNF708;;chr1:151032782..151032801,+!p4@MLLT11!0.94!15.70!MLLT11;;chr12:125003087..125003141,-!p4@NCOR2!0.94!10.06!NCOR2;;chr19:22193731..22193751,-!p1@ZNF208!0.94!7.61!ZNF208;;chr5:88178983..88179012,-!p1@MEF2C!0.93!60.83!MEF2C;;chr18:22932080..22932170,-!p1@ZNF521!0.92!32.15!ZNF521;;chr2:178128250..178128293,-!p6@NFE2L2!0.92!19.10!NFE2L2;;chr3:126076242..126076257,-!p1@KLF15!0.92!9.18!KLF15;;chr2:2328725..2328739,-!p5@MYT1L!0.92!7.27!MYT1L;;chr17:53344980..53345011,+!p3@HLF!0.92!7.27!HLF;;chr21:34442584..34442587,+!p3@OLIG1!0.91!7.14!OLIG1;;chr2:74229812..74229867,+!p1@TET3!0.90!17.94!TET3;;chr5:178368186..178368238,+!p1@ZNF454!0.90!12.71!ZNF454;;chr2:180726058..180726098,-!p3@ZNF385B!0.90!7.00!ZNF385B;;chr12:103351444..103351461,+!p1@ASCL1!0.90!7.00!ASCL1;;chr2:145275947..145275981,-!p10@ZEB2!0.90!6.93!ZEB2;;chr19:21512144..21512191,-!p2@ZNF708!0.89!33.31!ZNF708;;chr12:54785054..54785072,-!p4@ZNF385A!0.89!7.82!ZNF385A;;chr10:38265517..38265591,-!p1@ZNF25!0.88!27.05!ZNF25;;chr6:143266185..143266238,-!p2@HIVEP2!0.88!9.38!HIVEP2;;chr11:125034605..125034636,+!p2@PKNOX2!0.88!6.66!PKNOX2;;chr11:31832658..31832681,-!p1@PAX6!0.88!6.66!PAX6;;chr12:26277798..26277809,-!p5@BHLHE41!0.88!6.59!BHLHE41;;chr14:58797974..58798011,+!p3@ARID4A!0.88!6.59!ARID4A;;chr7:150974206..150974255,-!p1@SMARCD3!0.87!42.55!SMARCD3;;chr19:13135731..13135787,+!p10@NFIX!0.87!6.46!NFIX;;chr2:180726291..180726311,-!p1@ZNF385B!0.87!6.39!ZNF385B;;chr4:26344778..26344807,+!p8@RBPJ!0.87!6.39!RBPJ;;chr2:214016314..214016343,-!p2@IKZF2!0.85!10.67!IKZF2;;chr15:57511609..57511651,+!p2@TCF12!0.85!10.60!TCF12;;chr6:1312325..1312340,+!p1@FOXQ1!0.85!10.33!FOXQ1;;chr1:151032739..151032748,+!p6@MLLT11!0.85!7.75!MLLT11;;chr9:135457530..135457541,+!p2@BARHL1!0.85!6.12!BARHL1;;chr17:46131916..46131952,+!p7@NFE2L1!0.85!6.05!NFE2L1;;chr17:4890919..4890985,-!p1@CAMTA2!0.84!59.81!CAMTA2;;chr7:28448965..28448994,+!p2@CREB5!0.84!22.23!CREB5;;chrX:106959661..106959763,-!p4@TSC22D3!0.84!18.22!TSC22D3;;chr3:114819124..114819200,-!p3@ZBTB20!0.84!14.34!ZBTB20;;chr19:21512115..21512135,-!p3@ZNF708!0.84!12.57!ZNF708;;chr5:3595934..3595957,+!p2@IRX1!0.84!5.98!IRX1;;chr8:10588010..10588030,-!p1@SOX7!0.84!5.85!SOX7;;chr13:100634130..100634143,+!p3@ZIC2!0.84!5.85!ZIC2;;chr17:70117153..70117174,+!p1@SOX9!0.83!63.96!SOX9;;chr2:60780607..60780624,-!p2@BCL11A!0.83!18.62!BCL11A;;chr18:52989031..52989079,-!p2@TCF4!0.83!14.41!TCF4;;chr2:176033027..176033050,-!p3@ATF2!0.83!8.22!ATF2;;chr8:55370487..55370503,+!p1@SOX17!0.83!5.78!SOX17;;chr14:33403648..33403710,+!p3@NPAS3!0.83!5.78!NPAS3;;chr2:180726331..180726344,-!p5@ZNF385B!0.83!5.71!ZNF385B;;chr2:2330039..2330072,-!p6@MYT1L!0.83!5.71!MYT1L;;chr1:217251619..217251658,-!p6@ESRRG!0.83!5.71!ESRRG;;chr2:2335109..2335134,-!p2@MYT1L!0.82!5.64!MYT1L;;chr10:48359344..48359376,+!p2@ZNF488!0.82!5.64!ZNF488;;chr1:61547894..61547968,+!p2@NFIA!0.81!17.06!NFIA;;chr1:151032833..151032850,+!p3@MLLT11!0.81!13.05!MLLT11;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.81!12.17!ZNF395;;chr20:45142154..45142227,-!p1@ZNF334!0.81!11.28!ZNF334;;chr19:57183114..57183145,-!p1@ZNF835!0.81!6.19!ZNF835;;chrX:101186981..101187030,-!p1@ZMAT1!0.80!18.62!ZMAT1;;chr18:529890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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001895;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002028;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002298
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=
@@ Line 40: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pons%252c%2520adult%252c%2520pool1.CNhs10640.10033-101E6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pons%252c%2520adult%252c%2520pool1.CNhs10640.10033-101E6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pons%252c%2520adult%252c%2520pool1.CNhs10640.10033-101E6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/pons%252c%2520adult%252c%2520pool1.CNhs10640.10033-101E6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/pons%252c%2520adult%252c%2520pool1.CNhs10640.10033-101E6.hg38.nobarcode.ctss.bed.gz
 |id=FF:10033-101E6
 |is_a=EFO:0002091;;FF:0010033
 |is_obsolete=
 |library_id=CNhs10640
-|library_ids=CNhs10640
+|library_id_phase_based=2:CNhs10640
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10033
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10033
 |name=pons, adult, pool1
 |namespace=FANTOM5
@@ Line 50: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10640,LSID658,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 64: / Line 76: @@
 |rna_rin=
 |rna_sample_type=total RNA
-|rna_tube_id=101E6
+|rna_tube_id=1.01E+08
 |rna_weight_ug=50
 |sample_age=
@@ Line 89: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10033-101E6;search_select_hide=table117:FF:10033-101E6
 }}

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FF:10033-101E6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:15, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0