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{{f5samples
{{f5samples
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|DRA_sample_Accession=CAGE@SAMD00005760
|accession_numbers=CAGE;DRX008726;DRR009598;DRZ001023;DRZ002408;DRZ012373;DRZ013758
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|comment=
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|def=
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Line 35: Line 42:
|fonse_treatment_closure=
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|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/smooth%2520muscle%252c%2520adult%252c%2520pool1.CNhs11755.10048-101G3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/smooth%2520muscle%252c%2520adult%252c%2520pool1.CNhs11755.10048-101G3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/smooth%2520muscle%252c%2520adult%252c%2520pool1.CNhs11755.10048-101G3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/smooth%2520muscle%252c%2520adult%252c%2520pool1.CNhs11755.10048-101G3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/smooth%2520muscle%252c%2520adult%252c%2520pool1.CNhs11755.10048-101G3.hg38.nobarcode.ctss.bed.gz
|id=FF:10048-101G3
|id=FF:10048-101G3
|is_a=EFO:0002091;;FF:0000004;;FF:0000210;;FF:0010048
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|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10048
|name=smooth muscle, adult, pool1
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|namespace=FANTOM5
Line 42: Line 61:
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|rna_box=101
|rna_box=101
|rna_catalog_number=Cat:636547
|rna_catalog_number=Cat:636547
Line 57: Line 79:
|rna_weight_ug=50
|rna_weight_ug=50
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|sample_age=
|sample_category=tissues
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|sample_cell_line=
Line 69: Line 92:
|sample_ethnicity=C
|sample_ethnicity=C
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|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.64113736982687e-206!GO:0005737;cytoplasm;4.68920666683668e-170!GO:0043226;organelle;9.02440092474965e-155!GO:0043229;intracellular organelle;1.84700090380887e-154!GO:0043231;intracellular membrane-bound organelle;2.71292076635679e-144!GO:0043227;membrane-bound organelle;3.09655217370962e-144!GO:0044444;cytoplasmic part;1.00186781751941e-102!GO:0005515;protein binding;9.50631196524287e-96!GO:0044422;organelle part;1.0719366894255e-79!GO:0044446;intracellular organelle part;1.27231748550157e-78!GO:0032991;macromolecular complex;3.97367274544062e-68!GO:0043170;macromolecule metabolic process;3.087734206942e-65!GO:0044238;primary metabolic process;7.38690688156141e-65!GO:0044237;cellular metabolic process;3.50235267459437e-62!GO:0005634;nucleus;2.58300441080348e-60!GO:0030529;ribonucleoprotein complex;3.49496916517829e-55!GO:0003723;RNA binding;2.01759500009834e-51!GO:0043233;organelle lumen;1.82715707075866e-49!GO:0031974;membrane-enclosed lumen;1.82715707075866e-49!GO:0044428;nuclear part;1.15167662655226e-47!GO:0016043;cellular component organization and biogenesis;9.23503277265434e-46!GO:0005739;mitochondrion;2.78496189756708e-44!GO:0019538;protein metabolic process;9.12902707183253e-42!GO:0033036;macromolecule localization;4.18948762865597e-40!GO:0015031;protein transport;5.72864417811878e-39!GO:0010467;gene expression;1.21981105324517e-38!GO:0045184;establishment of protein localization;3.43854328490886e-37!GO:0008104;protein localization;5.60716919813873e-37!GO:0043283;biopolymer metabolic process;2.1259726926432e-36!GO:0044260;cellular macromolecule metabolic process;5.54163006294609e-36!GO:0043234;protein complex;1.90200007058191e-35!GO:0044267;cellular protein metabolic process;8.27760913988389e-35!GO:0031090;organelle membrane;1.93302631930855e-32!GO:0016071;mRNA metabolic process;4.42081285837766e-32!GO:0006412;translation;6.83895489554405e-32!GO:0005840;ribosome;1.24965840105299e-31!GO:0044429;mitochondrial part;3.0755642236083e-31!GO:0006396;RNA processing;2.27634443796631e-30!GO:0031967;organelle envelope;3.69306442649488e-30!GO:0005829;cytosol;3.77606766320112e-30!GO:0031975;envelope;6.69542864686728e-30!GO:0046907;intracellular transport;2.37591541621743e-29!GO:0031981;nuclear lumen;2.83665819258151e-29!GO:0008380;RNA splicing;5.28319029544894e-29!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.42489588718286e-27!GO:0003735;structural constituent of ribosome;1.12226524736756e-26!GO:0006886;intracellular protein transport;3.83039700576011e-26!GO:0006397;mRNA processing;4.33197934300533e-26!GO:0065003;macromolecular complex assembly;7.61829188885384e-25!GO:0033279;ribosomal subunit;1.30886931740687e-24!GO:0022607;cellular component assembly;3.134369982253e-23!GO:0008134;transcription factor binding;4.04371468752836e-23!GO:0005740;mitochondrial envelope;7.81530273062681e-21!GO:0016070;RNA metabolic process;1.91920637774965e-20!GO:0031966;mitochondrial membrane;4.02582312368598e-20!GO:0005654;nucleoplasm;5.7361369043615e-20!GO:0009059;macromolecule biosynthetic process;8.43865837567183e-20!GO:0005681;spliceosome;1.3644914881113e-19!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.80081845984047e-19!GO:0019866;organelle inner membrane;2.8229002332895e-19!GO:0003676;nucleic acid binding;4.74168724018687e-19!GO:0044249;cellular biosynthetic process;6.27414318290195e-19!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.9004690403281e-19!GO:0051641;cellular localization;8.37884849954155e-19!GO:0051649;establishment of cellular localization;9.88175964266992e-19!GO:0006996;organelle organization and biogenesis;3.13235365428248e-18!GO:0005743;mitochondrial inner membrane;5.19208046879839e-18!GO:0006119;oxidative phosphorylation;6.05007999588678e-18!GO:0044451;nucleoplasm part;9.55989066397791e-18!GO:0009058;biosynthetic process;3.16290280703147e-17!GO:0006512;ubiquitin cycle;3.73692470272268e-17!GO:0043228;non-membrane-bound organelle;4.52595066363439e-17!GO:0043232;intracellular non-membrane-bound organelle;4.52595066363439e-17!GO:0000166;nucleotide binding;4.61800985663819e-17!GO:0044445;cytosolic part;1.95988061410671e-16!GO:0016192;vesicle-mediated transport;3.27436360618599e-16!GO:0022618;protein-RNA complex assembly;5.6340798748454e-16!GO:0050794;regulation of cellular process;8.05089384854471e-16!GO:0048770;pigment granule;1.46830064873464e-15!GO:0042470;melanosome;1.46830064873464e-15!GO:0005746;mitochondrial respiratory chain;2.16221007969295e-15!GO:0044455;mitochondrial membrane part;2.16221007969295e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;5.99543908301771e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.03847786847369e-14!GO:0019941;modification-dependent protein catabolic process;1.25435045755359e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.25435045755359e-14!GO:0050789;regulation of biological process;1.31409081258754e-14!GO:0003712;transcription cofactor activity;1.60713531572164e-14!GO:0044257;cellular protein catabolic process;2.13686624094047e-14!GO:0008135;translation factor activity, nucleic acid binding;2.67002920135096e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.89549158961476e-14!GO:0016874;ligase activity;5.56516434874952e-14!GO:0006457;protein folding;1.0343823889772e-13!GO:0016462;pyrophosphatase activity;1.09239871366564e-13!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.24104911345118e-13!GO:0015935;small ribosomal subunit;1.57539455979892e-13!GO:0017111;nucleoside-triphosphatase activity;1.9073982084037e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;1.98467114933177e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.99960190391593e-13!GO:0003954;NADH dehydrogenase activity;2.99960190391593e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.99960190391593e-13!GO:0006605;protein targeting;3.19762573884826e-13!GO:0005794;Golgi apparatus;3.46591407163303e-13!GO:0005783;endoplasmic reticulum;3.5697206642475e-13!GO:0031980;mitochondrial lumen;4.13922309493728e-13!GO:0005759;mitochondrial matrix;4.13922309493728e-13!GO:0044265;cellular macromolecule catabolic process;4.57378720796882e-13!GO:0048523;negative regulation of cellular process;5.06767360362789e-13!GO:0048193;Golgi vesicle transport;6.82134367522251e-13!GO:0043412;biopolymer modification;8.0744060593762e-13!GO:0006366;transcription from RNA polymerase II promoter;1.22102868574933e-12!GO:0043687;post-translational protein modification;1.22623552349103e-12!GO:0043285;biopolymer catabolic process;2.8550756088063e-12!GO:0015934;large ribosomal subunit;4.07101113676679e-12!GO:0012505;endomembrane system;5.10061980915806e-12!GO:0006464;protein modification process;6.71035589420633e-12!GO:0016564;transcription repressor activity;6.76239100499408e-12!GO:0030163;protein catabolic process;1.37464523492265e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.63275960765278e-11!GO:0042773;ATP synthesis coupled electron transport;1.63275960765278e-11!GO:0030964;NADH dehydrogenase complex (quinone);2.05940071632329e-11!GO:0045271;respiratory chain complex I;2.05940071632329e-11!GO:0005747;mitochondrial respiratory chain complex I;2.05940071632329e-11!GO:0003743;translation initiation factor activity;3.3301063384288e-11!GO:0032553;ribonucleotide binding;3.89626504730531e-11!GO:0032555;purine ribonucleotide binding;3.89626504730531e-11!GO:0048519;negative regulation of biological process;4.23619278548968e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.90076245882501e-11!GO:0000502;proteasome complex (sensu Eukaryota);5.22322135862325e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.26693464110877e-11!GO:0017076;purine nucleotide binding;5.7512287559807e-11!GO:0006413;translational initiation;6.89956967846919e-11!GO:0016604;nuclear body;1.04911309388804e-10!GO:0006461;protein complex assembly;1.05708278211193e-10!GO:0006913;nucleocytoplasmic transport;1.52818478529991e-10!GO:0008565;protein transporter activity;2.35763948076847e-10!GO:0016607;nuclear speck;3.22894348771907e-10!GO:0065007;biological regulation;3.4564969358814e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.73590041036611e-10!GO:0051169;nuclear transport;3.99631526814612e-10!GO:0051082;unfolded protein binding;4.0175008854248e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.60292611448434e-10!GO:0005635;nuclear envelope;6.70370510620293e-10!GO:0006446;regulation of translational initiation;7.41997863960544e-10!GO:0009057;macromolecule catabolic process;8.37015720799276e-10!GO:0008092;cytoskeletal protein binding;9.34586670975817e-10!GO:0009055;electron carrier activity;1.16569690498888e-09!GO:0030036;actin cytoskeleton organization and biogenesis;1.28037369342216e-09!GO:0044248;cellular catabolic process;1.41692105039408e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;2.11696562242885e-09!GO:0000375;RNA splicing, via transesterification reactions;2.11696562242885e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.11696562242885e-09!GO:0005730;nucleolus;2.24375386003311e-09!GO:0019222;regulation of metabolic process;2.53300834218881e-09!GO:0008639;small protein conjugating enzyme activity;2.83563741057644e-09!GO:0019787;small conjugating protein ligase activity;3.41056155343555e-09!GO:0031965;nuclear membrane;3.44757867320132e-09!GO:0031324;negative regulation of cellular metabolic process;3.68612221313637e-09!GO:0004842;ubiquitin-protein ligase activity;4.31507478609911e-09!GO:0016481;negative regulation of transcription;5.85314834183815e-09!GO:0006259;DNA metabolic process;8.65252226081274e-09!GO:0030029;actin filament-based process;1.08117759775642e-08!GO:0005761;mitochondrial ribosome;1.17123686981747e-08!GO:0000313;organellar ribosome;1.17123686981747e-08!GO:0017038;protein import;1.30418884007335e-08!GO:0003714;transcription corepressor activity;1.43615099049738e-08!GO:0009892;negative regulation of metabolic process;1.44124882667078e-08!GO:0009060;aerobic respiration;1.768257873856e-08!GO:0045333;cellular respiration;2.21926047746693e-08!GO:0005793;ER-Golgi intermediate compartment;2.9006515139977e-08!GO:0051246;regulation of protein metabolic process;2.91000529911541e-08!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.79142198827209e-08!GO:0051186;cofactor metabolic process;4.99280270920578e-08!GO:0003924;GTPase activity;5.26220701076835e-08!GO:0012501;programmed cell death;5.5304120880474e-08!GO:0008219;cell death;7.58679637560465e-08!GO:0016265;death;7.58679637560465e-08!GO:0006793;phosphorus metabolic process;8.70452852067423e-08!GO:0006796;phosphate metabolic process;8.70452852067423e-08!GO:0031252;leading edge;1.03966499869608e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.15925557556653e-07!GO:0006915;apoptosis;1.18752811818117e-07!GO:0016881;acid-amino acid ligase activity;1.73716586644058e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.03749634976713e-07!GO:0044432;endoplasmic reticulum part;2.14079859439094e-07!GO:0031982;vesicle;2.46776236940627e-07!GO:0031988;membrane-bound vesicle;3.23331661390912e-07!GO:0007264;small GTPase mediated signal transduction;3.65892170387249e-07!GO:0003713;transcription coactivator activity;3.65945039264621e-07!GO:0019899;enzyme binding;3.66207575271593e-07!GO:0031410;cytoplasmic vesicle;4.20897112289286e-07!GO:0005525;GTP binding;4.20897112289286e-07!GO:0016023;cytoplasmic membrane-bound vesicle;4.61445369670056e-07!GO:0006099;tricarboxylic acid cycle;5.12694676579583e-07!GO:0046356;acetyl-CoA catabolic process;5.12694676579583e-07!GO:0006606;protein import into nucleus;5.14499221666121e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;5.50486182661125e-07!GO:0032559;adenyl ribonucleotide binding;5.68226590447881e-07!GO:0005768;endosome;5.94660188551006e-07!GO:0051170;nuclear import;6.27660887978855e-07!GO:0005524;ATP binding;7.62778267820238e-07!GO:0030554;adenyl nucleotide binding;8.91125792999719e-07!GO:0016310;phosphorylation;1.05828944314287e-06!GO:0015980;energy derivation by oxidation of organic compounds;1.08823209047427e-06!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.14521910991195e-06!GO:0045892;negative regulation of transcription, DNA-dependent;1.64448108262877e-06!GO:0016563;transcription activator activity;1.77989599123602e-06!GO:0044453;nuclear membrane part;1.84031597473534e-06!GO:0009109;coenzyme catabolic process;1.88377164704154e-06!GO:0006732;coenzyme metabolic process;1.90676195729601e-06!GO:0048475;coated membrane;2.06206228946841e-06!GO:0030117;membrane coat;2.06206228946841e-06!GO:0031323;regulation of cellular metabolic process;2.20473086884078e-06!GO:0006084;acetyl-CoA metabolic process;2.21468034105512e-06!GO:0016568;chromatin modification;2.89836697426678e-06!GO:0008361;regulation of cell size;2.95528627256444e-06!GO:0016887;ATPase activity;3.10105808792294e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;3.10105808792294e-06!GO:0043566;structure-specific DNA binding;3.73075025629181e-06!GO:0051187;cofactor catabolic process;3.7696050505726e-06!GO:0032561;guanyl ribonucleotide binding;3.79399845661432e-06!GO:0019001;guanyl nucleotide binding;3.79399845661432e-06!GO:0045786;negative regulation of progression through cell cycle;4.20331959155072e-06!GO:0016049;cell growth;4.49386892440359e-06!GO:0030120;vesicle coat;4.92724547257229e-06!GO:0030662;coated vesicle membrane;4.92724547257229e-06!GO:0003779;actin binding;5.44391109188597e-06!GO:0006888;ER to Golgi vesicle-mediated transport;5.46686436060361e-06!GO:0019829;cation-transporting ATPase activity;5.8043946420553e-06!GO:0015986;ATP synthesis coupled proton transport;6.65487912389328e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.65487912389328e-06!GO:0006350;transcription;6.84754370478629e-06!GO:0015078;hydrogen ion transmembrane transporter activity;6.91760477091653e-06!GO:0006323;DNA packaging;7.43015735534489e-06!GO:0042623;ATPase activity, coupled;1.02637432510511e-05!GO:0010468;regulation of gene expression;1.1155173809978e-05!GO:0005798;Golgi-associated vesicle;1.25668863315435e-05!GO:0004386;helicase activity;1.45516193330947e-05!GO:0005643;nuclear pore;1.53642767439929e-05!GO:0008026;ATP-dependent helicase activity;1.6106565225867e-05!GO:0006403;RNA localization;1.80988806126101e-05!GO:0050657;nucleic acid transport;1.92154766930529e-05!GO:0051236;establishment of RNA localization;1.92154766930529e-05!GO:0050658;RNA transport;1.92154766930529e-05!GO:0016044;membrane organization and biogenesis;1.95283896459055e-05!GO:0045259;proton-transporting ATP synthase complex;2.04195702745943e-05!GO:0007010;cytoskeleton organization and biogenesis;2.35075793106067e-05!GO:0009056;catabolic process;2.40360192168434e-05!GO:0051789;response to protein stimulus;2.45536188147784e-05!GO:0006986;response to unfolded protein;2.45536188147784e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.6134678158376e-05!GO:0006091;generation of precursor metabolites and energy;2.6134678158376e-05!GO:0032446;protein modification by small protein conjugation;3.00642818133202e-05!GO:0016469;proton-transporting two-sector ATPase complex;3.20226051019688e-05!GO:0005788;endoplasmic reticulum lumen;3.54322552056674e-05!GO:0000245;spliceosome assembly;3.57189687860771e-05!GO:0044431;Golgi apparatus part;3.67804900289327e-05!GO:0030133;transport vesicle;4.6861086316749e-05!GO:0001558;regulation of cell growth;4.71251868741177e-05!GO:0048471;perinuclear region of cytoplasm;4.86750271742515e-05!GO:0016567;protein ubiquitination;5.03525275711989e-05!GO:0051427;hormone receptor binding;5.06666113961764e-05!GO:0000151;ubiquitin ligase complex;5.292204441448e-05!GO:0009199;ribonucleoside triphosphate metabolic process;5.96515339174111e-05!GO:0005770;late endosome;5.97400171212658e-05!GO:0009142;nucleoside triphosphate biosynthetic process;6.10067950224612e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.10067950224612e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.31518834379528e-05!GO:0004812;aminoacyl-tRNA ligase activity;6.31518834379528e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.31518834379528e-05!GO:0044440;endosomal part;6.70024515963922e-05!GO:0010008;endosome membrane;6.70024515963922e-05!GO:0009141;nucleoside triphosphate metabolic process;7.1686079236073e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.62653877235613e-05!GO:0016197;endosome transport;7.96816763896393e-05!GO:0042254;ribosome biogenesis and assembly;8.83058913639406e-05!GO:0030532;small nuclear ribonucleoprotein complex;9.4393231470767e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.60640834692956e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000101795996709559!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.000102596562616146!GO:0009144;purine nucleoside triphosphate metabolic process;0.000102596562616146!GO:0035257;nuclear hormone receptor binding;0.000102596562616146!GO:0005791;rough endoplasmic reticulum;0.000105756944817809!GO:0003697;single-stranded DNA binding;0.000106991882651357!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.000108100554529954!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.000108100554529954!GO:0006754;ATP biosynthetic process;0.000120442256961518!GO:0006753;nucleoside phosphate metabolic process;0.000120442256961518!GO:0032774;RNA biosynthetic process;0.00012312801024221!GO:0009259;ribonucleotide metabolic process;0.000126373435768515!GO:0006351;transcription, DNA-dependent;0.00012858993969352!GO:0005667;transcription factor complex;0.000128898168187453!GO:0046930;pore complex;0.000131357148533494!GO:0043038;amino acid activation;0.000134644244631833!GO:0006418;tRNA aminoacylation for protein translation;0.000134644244631833!GO:0043039;tRNA aminoacylation;0.000134644244631833!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.00013879954056322!GO:0008286;insulin receptor signaling pathway;0.000141642189749617!GO:0046034;ATP metabolic process;0.00014299767915636!GO:0005773;vacuole;0.000146407995279055!GO:0009150;purine ribonucleotide metabolic process;0.000157506853363639!GO:0006613;cotranslational protein targeting to membrane;0.000161158408297343!GO:0006163;purine nucleotide metabolic process;0.000167548783528915!GO:0065002;intracellular protein transport across a membrane;0.000168940885927768!GO:0005789;endoplasmic reticulum membrane;0.000190443640365951!GO:0030027;lamellipodium;0.000196757579992636!GO:0003690;double-stranded DNA binding;0.000217709991747225!GO:0003724;RNA helicase activity;0.000225964465092416!GO:0006916;anti-apoptosis;0.000234469010146858!GO:0016491;oxidoreductase activity;0.000243938063000749!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000246152403551914!GO:0051028;mRNA transport;0.000247699171008742!GO:0042802;identical protein binding;0.000269804234283055!GO:0005839;proteasome core complex (sensu Eukaryota);0.000283718132882407!GO:0051276;chromosome organization and biogenesis;0.000298985722658715!GO:0043069;negative regulation of programmed cell death;0.000301615313477217!GO:0045449;regulation of transcription;0.000335782754453512!GO:0009152;purine ribonucleotide biosynthetic process;0.000345575569863069!GO:0005769;early endosome;0.000358066547708795!GO:0001726;ruffle;0.000361269926644455!GO:0007049;cell cycle;0.000369083253307934!GO:0006164;purine nucleotide biosynthetic process;0.00037107370759801!GO:0006402;mRNA catabolic process;0.000387580542459036!GO:0009260;ribonucleotide biosynthetic process;0.000401103250356356!GO:0007243;protein kinase cascade;0.000410111134981712!GO:0019843;rRNA binding;0.00045595852717791!GO:0007265;Ras protein signal transduction;0.00045595852717791!GO:0045893;positive regulation of transcription, DNA-dependent;0.000459826956606337!GO:0043066;negative regulation of apoptosis;0.000461990063596689!GO:0000323;lytic vacuole;0.000518081557163514!GO:0005764;lysosome;0.000518081557163514!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000552094598257845!GO:0048522;positive regulation of cellular process;0.000592806961878929!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000592806961878929!GO:0003702;RNA polymerase II transcription factor activity;0.000638502739851103!GO:0005741;mitochondrial outer membrane;0.000643437730955816!GO:0043623;cellular protein complex assembly;0.000643437730955816!GO:0051287;NAD binding;0.000651855262143275!GO:0035258;steroid hormone receptor binding;0.000718611871448858!GO:0006897;endocytosis;0.000738171765319794!GO:0010324;membrane invagination;0.000738171765319794!GO:0030518;steroid hormone receptor signaling pathway;0.000739853919850953!GO:0042981;regulation of apoptosis;0.000749163953932207!GO:0006974;response to DNA damage stimulus;0.000754007533869788!GO:0043067;regulation of programmed cell death;0.000775364512944851!GO:0051128;regulation of cellular component organization and biogenesis;0.000782199472897979!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000877900632601015!GO:0016859;cis-trans isomerase activity;0.000946361077353831!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.000967371862475292!GO:0030867;rough endoplasmic reticulum membrane;0.000967371862475292!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000981244668092101!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00101083321940031!GO:0000074;regulation of progression through cell cycle;0.00101345193909395!GO:0051726;regulation of cell cycle;0.00104837492816941!GO:0051188;cofactor biosynthetic process;0.00107653055230967!GO:0031968;organelle outer membrane;0.00112040982645038!GO:0008287;protein serine/threonine phosphatase complex;0.00116715615058953!GO:0004298;threonine endopeptidase activity;0.00119730613320004!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00125268157826391!GO:0006355;regulation of transcription, DNA-dependent;0.0013598265076044!GO:0015631;tubulin binding;0.00138626964552597!GO:0007242;intracellular signaling cascade;0.00139294973032671!GO:0019867;outer membrane;0.00149072044370897!GO:0043021;ribonucleoprotein binding;0.00154342738344547!GO:0040008;regulation of growth;0.00154436106782399!GO:0031072;heat shock protein binding;0.00158075258426969!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00166424439716689!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00166424439716689!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00166424439716689!GO:0000139;Golgi membrane;0.0018786851587539!GO:0045941;positive regulation of transcription;0.00194408837713475!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00198819667825968!GO:0009719;response to endogenous stimulus;0.00198819667825968!GO:0008154;actin polymerization and/or depolymerization;0.00199672080855007!GO:0006612;protein targeting to membrane;0.00206033477329559!GO:0005083;small GTPase regulator activity;0.00228423066151942!GO:0008270;zinc ion binding;0.00232887093076014!GO:0006891;intra-Golgi vesicle-mediated transport;0.00233297410612415!GO:0006892;post-Golgi vesicle-mediated transport;0.00238487637886056!GO:0005813;centrosome;0.00242302051584625!GO:0043488;regulation of mRNA stability;0.00243654736464551!GO:0043487;regulation of RNA stability;0.00243654736464551!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0024922323535261!GO:0044420;extracellular matrix part;0.00251783199636598!GO:0048518;positive regulation of biological process;0.00251783199636598!GO:0009966;regulation of signal transduction;0.00251783199636598!GO:0046914;transition metal ion binding;0.00262348835353654!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00262348835353654!GO:0005885;Arp2/3 protein complex;0.00275761776382929!GO:0015629;actin cytoskeleton;0.00280995934155961!GO:0006399;tRNA metabolic process;0.00285102463918897!GO:0005905;coated pit;0.00299727468497997!GO:0033673;negative regulation of kinase activity;0.00305949166836243!GO:0006469;negative regulation of protein kinase activity;0.00305949166836243!GO:0045045;secretory pathway;0.00318516809136315!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00325788364847129!GO:0001516;prostaglandin biosynthetic process;0.00327796805815472!GO:0046457;prostanoid biosynthetic process;0.00327796805815472!GO:0005762;mitochondrial large ribosomal subunit;0.00331613138036817!GO:0000315;organellar large ribosomal subunit;0.00331613138036817!GO:0006607;NLS-bearing substrate import into nucleus;0.00367713768988033!GO:0030041;actin filament polymerization;0.00368092244107992!GO:0017166;vinculin binding;0.0037299053838666!GO:0051252;regulation of RNA metabolic process;0.00373355355556007!GO:0008186;RNA-dependent ATPase activity;0.00374455530907713!GO:0008654;phospholipid biosynthetic process;0.00380736378426069!GO:0005912;adherens junction;0.00386834245809525!GO:0045098;type III intermediate filament;0.00387633444509554!GO:0005581;collagen;0.00391541924706644!GO:0030663;COPI coated vesicle membrane;0.00394547728498688!GO:0030126;COPI vesicle coat;0.00394547728498688!GO:0030522;intracellular receptor-mediated signaling pathway;0.00410797652315762!GO:0000314;organellar small ribosomal subunit;0.00418120288529888!GO:0005763;mitochondrial small ribosomal subunit;0.00418120288529888!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00429197039516944!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00429197039516944!GO:0003729;mRNA binding;0.00458420908130261!GO:0045792;negative regulation of cell size;0.00478436308664165!GO:0009108;coenzyme biosynthetic process;0.00478436308664165!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00478581863154754!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00478851344245868!GO:0015630;microtubule cytoskeleton;0.00478851344245868!GO:0006693;prostaglandin metabolic process;0.00482540360043357!GO:0006692;prostanoid metabolic process;0.00482540360043357!GO:0051087;chaperone binding;0.00491801871651265!GO:0006979;response to oxidative stress;0.00525328625931076!GO:0030695;GTPase regulator activity;0.00529168496930046!GO:0005048;signal sequence binding;0.00529168496930046!GO:0030308;negative regulation of cell growth;0.00543022825181722!GO:0005815;microtubule organizing center;0.00572475125164724!GO:0005100;Rho GTPase activator activity;0.00578522840444522!GO:0006414;translational elongation;0.00578522840444522!GO:0051348;negative regulation of transferase activity;0.00578522840444522!GO:0051920;peroxiredoxin activity;0.00589271211617578!GO:0006950;response to stress;0.00592734778672172!GO:0006364;rRNA processing;0.00615802492455743!GO:0051168;nuclear export;0.00629818292938561!GO:0008250;oligosaccharyl transferase complex;0.00631627050009188!GO:0031589;cell-substrate adhesion;0.00652385063299429!GO:0019904;protein domain specific binding;0.00652939476239797!GO:0031901;early endosome membrane;0.00654894793661841!GO:0016853;isomerase activity;0.00671159731614149!GO:0030118;clathrin coat;0.00685752024155959!GO:0006401;RNA catabolic process;0.00685752024155959!GO:0005096;GTPase activator activity;0.0069696824162173!GO:0030241;muscle thick filament assembly;0.0069696824162173!GO:0031034;myosin filament assembly;0.0069696824162173!GO:0031033;myosin filament assembly or disassembly;0.0069696824162173!GO:0048739;cardiac muscle fiber development;0.0069696824162173!GO:0030137;COPI-coated vesicle;0.00705962277171574!GO:0033116;ER-Golgi intermediate compartment membrane;0.00705962277171574!GO:0008139;nuclear localization sequence binding;0.0075490568211634!GO:0016363;nuclear matrix;0.00768675380411841!GO:0030132;clathrin coat of coated pit;0.00774404526417734!GO:0048500;signal recognition particle;0.00783118259088214!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00787905699914475!GO:0015002;heme-copper terminal oxidase activity;0.00787905699914475!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00787905699914475!GO:0004129;cytochrome-c oxidase activity;0.00787905699914475!GO:0016072;rRNA metabolic process;0.00829359109608353!GO:0004674;protein serine/threonine kinase activity;0.00838067642739315!GO:0007005;mitochondrion organization and biogenesis;0.00861996910785327!GO:0005869;dynactin complex;0.00887118867386242!GO:0000059;protein import into nucleus, docking;0.00906699317465129!GO:0006333;chromatin assembly or disassembly;0.00913199641047832!GO:0030521;androgen receptor signaling pathway;0.00928232646917216!GO:0008047;enzyme activator activity;0.00932598378898637!GO:0004004;ATP-dependent RNA helicase activity;0.00939569567585677!GO:0006281;DNA repair;0.00994338808065057!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0100152715949962!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0103818138478398!GO:0006752;group transfer coenzyme metabolic process;0.0107130393376587!GO:0030134;ER to Golgi transport vesicle;0.010967424459885!GO:0030100;regulation of endocytosis;0.0111501533952587!GO:0022890;inorganic cation transmembrane transporter activity;0.0112909120955821!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0114733887394836!GO:0007160;cell-matrix adhesion;0.0115416631762542!GO:0030658;transport vesicle membrane;0.0115770727284378!GO:0050811;GABA receptor binding;0.0116950431420276!GO:0043284;biopolymer biosynthetic process;0.0123350441029072!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0125246461748682!GO:0003746;translation elongation factor activity;0.0126764595319889!GO:0051270;regulation of cell motility;0.0131272727438003!GO:0045454;cell redox homeostasis;0.0137636848073096!GO:0001725;stress fiber;0.0141313940160763!GO:0032432;actin filament bundle;0.0141313940160763!GO:0004576;oligosaccharyl transferase activity;0.0146564322186557!GO:0008601;protein phosphatase type 2A regulator activity;0.0152867824884435!GO:0031902;late endosome membrane;0.015329251830094!GO:0032940;secretion by cell;0.0156220394585551!GO:0008017;microtubule binding;0.0158411215445277!GO:0048487;beta-tubulin binding;0.0159362239213305!GO:0007266;Rho protein signal transduction;0.0162995521853013!GO:0043681;protein import into mitochondrion;0.0167851004038396!GO:0030127;COPII vesicle coat;0.0173388789053288!GO:0012507;ER to Golgi transport vesicle membrane;0.0173388789053288!GO:0007517;muscle development;0.0180195082464813!GO:0043034;costamere;0.018028963199655!GO:0000159;protein phosphatase type 2A complex;0.0180493602385294!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0181712953944404!GO:0045047;protein targeting to ER;0.0181712953944404!GO:0051540;metal cluster binding;0.0189720180487651!GO:0051536;iron-sulfur cluster binding;0.0189720180487651!GO:0004722;protein serine/threonine phosphatase activity;0.0190303836415768!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0194494661400132!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0194494661400132!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0195473177805566!GO:0065004;protein-DNA complex assembly;0.0211318006050086!GO:0016787;hydrolase activity;0.0212002970809743!GO:0065009;regulation of a molecular function;0.0212002970809743!GO:0000209;protein polyubiquitination;0.0218815681428574!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.022002777112143!GO:0015399;primary active transmembrane transporter activity;0.022002777112143!GO:0012506;vesicle membrane;0.0227137346808725!GO:0030119;AP-type membrane coat adaptor complex;0.022780842156813!GO:0009117;nucleotide metabolic process;0.0231525353395517!GO:0000118;histone deacetylase complex;0.0239145716274943!GO:0008312;7S RNA binding;0.0242421234284784!GO:0000902;cell morphogenesis;0.0250531045896743!GO:0032989;cellular structure morphogenesis;0.0250531045896743!GO:0006650;glycerophospholipid metabolic process;0.0254438839777322!GO:0007050;cell cycle arrest;0.0254516816616685!GO:0030659;cytoplasmic vesicle membrane;0.0257540811405585!GO:0006376;mRNA splice site selection;0.0258791946535269!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0258791946535269!GO:0022402;cell cycle process;0.0259476841846473!GO:0003711;transcription elongation regulator activity;0.0260224114581177!GO:0045926;negative regulation of growth;0.0260224114581177!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0260596352274383!GO:0043414;biopolymer methylation;0.0266842857528457!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0268199156935386!GO:0030836;positive regulation of actin filament depolymerization;0.0269057942293106!GO:0030660;Golgi-associated vesicle membrane;0.026986350152045!GO:0031625;ubiquitin protein ligase binding;0.0270367700047761!GO:0016301;kinase activity;0.0273304181925819!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0273304181925819!GO:0046983;protein dimerization activity;0.0281835815621996!GO:0051539;4 iron, 4 sulfur cluster binding;0.0284749365852115!GO:0016791;phosphoric monoester hydrolase activity;0.0288455491869583!GO:0030320;cellular monovalent inorganic anion homeostasis;0.029231085656425!GO:0055083;monovalent inorganic anion homeostasis;0.029231085656425!GO:0055064;chloride ion homeostasis;0.029231085656425!GO:0030644;cellular chloride ion homeostasis;0.029231085656425!GO:0031349;positive regulation of defense response;0.0294772854771333!GO:0050729;positive regulation of inflammatory response;0.0294772854771333!GO:0051101;regulation of DNA binding;0.0294772854771333!GO:0008234;cysteine-type peptidase activity;0.0295611171492436!GO:0008147;structural constituent of bone;0.0301143037718588!GO:0007030;Golgi organization and biogenesis;0.0302570325884615!GO:0030145;manganese ion binding;0.0303214019344973!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0305247352290435!GO:0033043;regulation of organelle organization and biogenesis;0.0305247352290435!GO:0016584;nucleosome positioning;0.0308785360790053!GO:0035035;histone acetyltransferase binding;0.0310494844221445!GO:0005868;cytoplasmic dynein complex;0.0336077170045197!GO:0005099;Ras GTPase activator activity;0.0336634907167722!GO:0048468;cell development;0.0345942344551942!GO:0019783;small conjugating protein-specific protease activity;0.0352285797728569!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0353472327800179!GO:0030131;clathrin adaptor complex;0.0368718214262815!GO:0016740;transferase activity;0.0369515947439477!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0370128656863477!GO:0005159;insulin-like growth factor receptor binding;0.0380012115727802!GO:0043407;negative regulation of MAP kinase activity;0.0380265485477069!GO:0004843;ubiquitin-specific protease activity;0.0380748059996049!GO:0006417;regulation of translation;0.0387531828458058!GO:0046474;glycerophospholipid biosynthetic process;0.0389426013399508!GO:0018196;peptidyl-asparagine modification;0.0389786459912828!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0389786459912828!GO:0006383;transcription from RNA polymerase III promoter;0.0389786459912828!GO:0005637;nuclear inner membrane;0.0390376495969933!GO:0008180;signalosome;0.0396440085168709!GO:0016779;nucleotidyltransferase activity;0.0399675174325273!GO:0050681;androgen receptor binding;0.0408439845592897!GO:0032259;methylation;0.0417717220950523!GO:0006595;polyamine metabolic process;0.0418137868854154!GO:0050662;coenzyme binding;0.0423723069497947!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0424189586241207!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0424189586241207!GO:0004784;superoxide dismutase activity;0.0424189586241207!GO:0030384;phosphoinositide metabolic process;0.0425175590919466!GO:0003899;DNA-directed RNA polymerase activity;0.0425175590919466!GO:0044433;cytoplasmic vesicle part;0.0428467465400315!GO:0004221;ubiquitin thiolesterase activity;0.0434031857739401!GO:0016311;dephosphorylation;0.0434031857739401!GO:0030140;trans-Golgi network transport vesicle;0.0436394779394608!GO:0040011;locomotion;0.0438539881678381!GO:0040012;regulation of locomotion;0.0439030552675863!GO:0001666;response to hypoxia;0.0441446136486389!GO:0014706;striated muscle development;0.0444144070431621!GO:0006260;DNA replication;0.0447747687531849!GO:0008097;5S rRNA binding;0.0457914648467361!GO:0043492;ATPase activity, coupled to movement of substances;0.0461272735492559!GO:0051271;negative regulation of cell motility;0.0461925225830868!GO:0030833;regulation of actin filament polymerization;0.0468285242444385!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.046973109555045!GO:0007167;enzyme linked receptor protein signaling pathway;0.0481393083672607!GO:0043022;ribosome binding;0.0486929760402723!GO:0003682;chromatin binding;0.0486929760402723!GO:0051098;regulation of binding;0.0487196372934364!GO:0004721;phosphoprotein phosphatase activity;0.0487196372934364
|sample_id=10048
|sample_id=10048
|sample_note=
|sample_note=
Line 76: Line 100:
|sample_tissue=smooth muscle
|sample_tissue=smooth muscle
|top_motifs=SRF:3.96748180459;PRDM1:2.88054003123;GATA4:2.79196278386;MYBL2:2.7458588052;NR3C1:2.62701091879;FOX{I1,J2}:2.13306114523;NFATC1..3:2.0052619061;TFAP4:1.93796617293;TFAP2{A,C}:1.83190381065;NR1H4:1.80933299991;HMX1:1.7322495025;FOXO1,3,4:1.71968613203;GFI1B:1.64517388709;KLF4:1.61544210889;HIC1:1.55900554092;MAZ:1.55557417013;POU3F1..4:1.51909172006;TEF:1.49079428471;MZF1:1.4651681361;TFAP2B:1.38100133831;FOX{D1,D2}:1.37568562838;MYFfamily:1.3624163386;MEF2{A,B,C,D}:1.35796138427;IKZF2:1.33389150129;GTF2I:1.31562470882;GTF2A1,2:1.31303198832;MTE{core}:1.27039926984;CDX1,2,4:1.26862214309;PATZ1:1.24984829346;IKZF1:1.17216177003;MED-1{core}:1.15551151324;BREu{core}:1.155507448;TLX1..3_NFIC{dimer}:1.14292134318;EGR1..3:1.14167155153;PAX5:1.13090924885;HMGA1,2:1.09541523775;UFEwm:1.07198533087;POU6F1:1.06905224892;HBP1_HMGB_SSRP1_UBTF:1.0428530412;HSF1,2:1.04010088132;ZNF238:1.00069938842;GCM1,2:0.975891329857;XBP1:0.973018800708;CDC5L:0.966344249655;TBP:0.951083113357;SMAD1..7,9:0.945260471731;AR:0.944313818587;FOXM1:0.943944012476;RREB1:0.916224569692;NHLH1,2:0.907764517408;TLX2:0.904437755219;SP1:0.902103720921;EP300:0.898322204869;SPZ1:0.879439754751;RBPJ:0.874805644193;ZBTB16:0.873315523452;TFCP2:0.86674953501;RXR{A,B,G}:0.845530397171;TEAD1:0.845023388969;ZNF384:0.843378855843;NKX2-2,8:0.842315189065;SOX5:0.831641838883;STAT1,3:0.828788009561;FOXP1:0.813016411773;TOPORS:0.810969393469;PITX1..3:0.792598379322;ZIC1..3:0.72617873897;BPTF:0.649719915452;ZFP161:0.641566764182;MTF1:0.62500520637;ALX1:0.604456230556;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.602033179219;XCPE1{core}:0.578984154853;GLI1..3:0.574785205677;NR6A1:0.533153489345;TGIF1:0.5239446203;GZF1:0.521160441098;POU1F1:0.500486745511;PAX6:0.497648876398;PAX1,9:0.490518896592;T:0.483083979255;FOXQ1:0.469378018793;ARID5B:0.464625537971;FOXL1:0.444904688713;STAT2,4,6:0.402031655767;EVI1:0.344528945439;IRF7:0.341767934599;HAND1,2:0.333596836325;AIRE:0.321864303;AHR_ARNT_ARNT2:0.313457961267;ATF4:0.311060615735;NKX2-1,4:0.30560494414;REST:0.286217465603;DBP:0.281579540957;PAX3,7:0.252312124152;RFX2..5_RFXANK_RFXAP:0.217044547385;MAFB:0.196912095396;NR5A1,2:0.194143701884;GATA6:0.151980665052;IRF1,2:0.129179122333;ZBTB6:0.119596335892;VSX1,2:0.112006119226;HOX{A4,D4}:0.0987638959218;ATF2:0.0585996896941;NFIX:0.0517878865864;ESRRA:0.0507592980393;FOX{F1,F2,J1}:0.0267930293796;TBX4,5:0.0188569223944;SPIB:-0.012131457884;SREBF1,2:-0.0297903840992;ZNF148:-0.0370023881281;JUN:-0.0379369498938;EBF1:-0.0568397862137;RORA:-0.0682901319071;NFIL3:-0.0843330736707;SOX17:-0.103185458008;RXRA_VDR{dimer}:-0.11018577574;NKX3-2:-0.127281893598;ZNF143:-0.133561829728;NKX6-1,2:-0.138392858462;FOXA2:-0.141904540575;SOX2:-0.142544376457;HES1:-0.149232533534;HOXA9_MEIS1:-0.152099591285;FOXD3:-0.159190608356;ETS1,2:-0.187711940621;MYOD1:-0.196072585792;SNAI1..3:-0.201284149629;ALX4:-0.210699970785;ONECUT1,2:-0.211179717831;NFE2L1:-0.215766125058;CREB1:-0.219499663352;HNF1A:-0.223760961956;ATF6:-0.24308080707;LHX3,4:-0.260538297178;ZNF423:-0.282237916046;TP53:-0.282889170789;CRX:-0.282935784359;HNF4A_NR2F1,2:-0.306229455339;SPI1:-0.314963076564;NKX2-3_NKX2-5:-0.324616310979;HOX{A6,A7,B6,B7}:-0.344063637314;NRF1:-0.345287923185;ESR1:-0.349000189959;FOXN1:-0.375731025048;NANOG:-0.379854299434;FOXP3:-0.408182166571;NFE2:-0.409640389813;PRRX1,2:-0.432591992779;HLF:-0.434349417453;CEBPA,B_DDIT3:-0.434844364675;FOSL2:-0.468384463619;ADNP_IRX_SIX_ZHX:-0.473214673618;HOX{A5,B5}:-0.495558384108;ATF5_CREB3:-0.498291158876;PBX1:-0.507881710072;RFX1:-0.510599259055;POU5F1:-0.513266480172;NFKB1_REL_RELA:-0.548424817968;NFE2L2:-0.550526247839;RUNX1..3:-0.563041278808;PPARG:-0.624773059734;CUX2:-0.637122997891;BACH2:-0.673322240449;LMO2:-0.695135200152;ZEB1:-0.698530413108;LEF1_TCF7_TCF7L1,2:-0.717800109618;FOS_FOS{B,L1}_JUN{B,D}:-0.718185901246;ELF1,2,4:-0.769283530525;GFI1:-0.776365177871;TFDP1:-0.821545290201;YY1:-0.82270047922;TAL1_TCF{3,4,12}:-0.921438666389;NFY{A,B,C}:-0.926348912367;bHLH_family:-0.934784395337;PAX8:-0.976906003477;NKX3-1:-0.981771846117;E2F1..5:-1.01677979608;OCT4_SOX2{dimer}:-1.06583538218;SOX{8,9,10}:-1.06793832791;POU2F1..3:-1.1247787216;PAX2:-1.17644378849;PDX1:-1.18384939987;DMAP1_NCOR{1,2}_SMARC:-1.25254811665;ELK1,4_GABP{A,B1}:-1.2614807442;EN1,2:-1.27653911382;NANOG{mouse}:-1.3368898592;PAX4:-1.44489544555;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.63364182459;MYB:-1.6912462526;HIF1A:-1.76156992926;STAT5{A,B}:-2.07996593562
|top_motifs=SRF:3.96748180459;PRDM1:2.88054003123;GATA4:2.79196278386;MYBL2:2.7458588052;NR3C1:2.62701091879;FOX{I1,J2}:2.13306114523;NFATC1..3:2.0052619061;TFAP4:1.93796617293;TFAP2{A,C}:1.83190381065;NR1H4:1.80933299991;HMX1:1.7322495025;FOXO1,3,4:1.71968613203;GFI1B:1.64517388709;KLF4:1.61544210889;HIC1:1.55900554092;MAZ:1.55557417013;POU3F1..4:1.51909172006;TEF:1.49079428471;MZF1:1.4651681361;TFAP2B:1.38100133831;FOX{D1,D2}:1.37568562838;MYFfamily:1.3624163386;MEF2{A,B,C,D}:1.35796138427;IKZF2:1.33389150129;GTF2I:1.31562470882;GTF2A1,2:1.31303198832;MTE{core}:1.27039926984;CDX1,2,4:1.26862214309;PATZ1:1.24984829346;IKZF1:1.17216177003;MED-1{core}:1.15551151324;BREu{core}:1.155507448;TLX1..3_NFIC{dimer}:1.14292134318;EGR1..3:1.14167155153;PAX5:1.13090924885;HMGA1,2:1.09541523775;UFEwm:1.07198533087;POU6F1:1.06905224892;HBP1_HMGB_SSRP1_UBTF:1.0428530412;HSF1,2:1.04010088132;ZNF238:1.00069938842;GCM1,2:0.975891329857;XBP1:0.973018800708;CDC5L:0.966344249655;TBP:0.951083113357;SMAD1..7,9:0.945260471731;AR:0.944313818587;FOXM1:0.943944012476;RREB1:0.916224569692;NHLH1,2:0.907764517408;TLX2:0.904437755219;SP1:0.902103720921;EP300:0.898322204869;SPZ1:0.879439754751;RBPJ:0.874805644193;ZBTB16:0.873315523452;TFCP2:0.86674953501;RXR{A,B,G}:0.845530397171;TEAD1:0.845023388969;ZNF384:0.843378855843;NKX2-2,8:0.842315189065;SOX5:0.831641838883;STAT1,3:0.828788009561;FOXP1:0.813016411773;TOPORS:0.810969393469;PITX1..3:0.792598379322;ZIC1..3:0.72617873897;BPTF:0.649719915452;ZFP161:0.641566764182;MTF1:0.62500520637;ALX1:0.604456230556;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.602033179219;XCPE1{core}:0.578984154853;GLI1..3:0.574785205677;NR6A1:0.533153489345;TGIF1:0.5239446203;GZF1:0.521160441098;POU1F1:0.500486745511;PAX6:0.497648876398;PAX1,9:0.490518896592;T:0.483083979255;FOXQ1:0.469378018793;ARID5B:0.464625537971;FOXL1:0.444904688713;STAT2,4,6:0.402031655767;EVI1:0.344528945439;IRF7:0.341767934599;HAND1,2:0.333596836325;AIRE:0.321864303;AHR_ARNT_ARNT2:0.313457961267;ATF4:0.311060615735;NKX2-1,4:0.30560494414;REST:0.286217465603;DBP:0.281579540957;PAX3,7:0.252312124152;RFX2..5_RFXANK_RFXAP:0.217044547385;MAFB:0.196912095396;NR5A1,2:0.194143701884;GATA6:0.151980665052;IRF1,2:0.129179122333;ZBTB6:0.119596335892;VSX1,2:0.112006119226;HOX{A4,D4}:0.0987638959218;ATF2:0.0585996896941;NFIX:0.0517878865864;ESRRA:0.0507592980393;FOX{F1,F2,J1}:0.0267930293796;TBX4,5:0.0188569223944;SPIB:-0.012131457884;SREBF1,2:-0.0297903840992;ZNF148:-0.0370023881281;JUN:-0.0379369498938;EBF1:-0.0568397862137;RORA:-0.0682901319071;NFIL3:-0.0843330736707;SOX17:-0.103185458008;RXRA_VDR{dimer}:-0.11018577574;NKX3-2:-0.127281893598;ZNF143:-0.133561829728;NKX6-1,2:-0.138392858462;FOXA2:-0.141904540575;SOX2:-0.142544376457;HES1:-0.149232533534;HOXA9_MEIS1:-0.152099591285;FOXD3:-0.159190608356;ETS1,2:-0.187711940621;MYOD1:-0.196072585792;SNAI1..3:-0.201284149629;ALX4:-0.210699970785;ONECUT1,2:-0.211179717831;NFE2L1:-0.215766125058;CREB1:-0.219499663352;HNF1A:-0.223760961956;ATF6:-0.24308080707;LHX3,4:-0.260538297178;ZNF423:-0.282237916046;TP53:-0.282889170789;CRX:-0.282935784359;HNF4A_NR2F1,2:-0.306229455339;SPI1:-0.314963076564;NKX2-3_NKX2-5:-0.324616310979;HOX{A6,A7,B6,B7}:-0.344063637314;NRF1:-0.345287923185;ESR1:-0.349000189959;FOXN1:-0.375731025048;NANOG:-0.379854299434;FOXP3:-0.408182166571;NFE2:-0.409640389813;PRRX1,2:-0.432591992779;HLF:-0.434349417453;CEBPA,B_DDIT3:-0.434844364675;FOSL2:-0.468384463619;ADNP_IRX_SIX_ZHX:-0.473214673618;HOX{A5,B5}:-0.495558384108;ATF5_CREB3:-0.498291158876;PBX1:-0.507881710072;RFX1:-0.510599259055;POU5F1:-0.513266480172;NFKB1_REL_RELA:-0.548424817968;NFE2L2:-0.550526247839;RUNX1..3:-0.563041278808;PPARG:-0.624773059734;CUX2:-0.637122997891;BACH2:-0.673322240449;LMO2:-0.695135200152;ZEB1:-0.698530413108;LEF1_TCF7_TCF7L1,2:-0.717800109618;FOS_FOS{B,L1}_JUN{B,D}:-0.718185901246;ELF1,2,4:-0.769283530525;GFI1:-0.776365177871;TFDP1:-0.821545290201;YY1:-0.82270047922;TAL1_TCF{3,4,12}:-0.921438666389;NFY{A,B,C}:-0.926348912367;bHLH_family:-0.934784395337;PAX8:-0.976906003477;NKX3-1:-0.981771846117;E2F1..5:-1.01677979608;OCT4_SOX2{dimer}:-1.06583538218;SOX{8,9,10}:-1.06793832791;POU2F1..3:-1.1247787216;PAX2:-1.17644378849;PDX1:-1.18384939987;DMAP1_NCOR{1,2}_SMARC:-1.25254811665;ELK1,4_GABP{A,B1}:-1.2614807442;EN1,2:-1.27653911382;NANOG{mouse}:-1.3368898592;PAX4:-1.44489544555;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.63364182459;MYB:-1.6912462526;HIF1A:-1.76156992926;STAT5{A,B}:-2.07996593562
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10048-101G3;search_select_hide=table117:FF:10048-101G3
}}
}}

Latest revision as of 12:17, 3 June 2020

Name:smooth muscle, adult, pool1
Species:Human (Homo sapiens)
Library ID:CNhs11755
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuesmooth muscle
dev stage20-68 years old adult
sexmale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyClontech
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number9052728A
catalog numberCat:636547
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005760
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11755 CAGE DRX008726 DRR009598
Accession ID Hg19

Library idBAMCTSS
CNhs11755 DRZ001023 DRZ002408
Accession ID Hg38

Library idBAMCTSS
CNhs11755 DRZ012373 DRZ013758
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.172
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.369
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.035
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.173
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0952
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0952
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.00938
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.186
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.387
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.0952
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.347
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.049
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0876
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.0952
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0.0952
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.597
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.0613
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.162
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.173
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0623
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.613
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.394
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0952
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0952
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.134
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.173
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus1.186
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus1.216
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.0952
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.0952
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.239
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11755

Jaspar motifP-value
MA0002.20.00203
MA0003.10.883
MA0004.10.00874
MA0006.10.955
MA0007.10.115
MA0009.10.478
MA0014.10.182
MA0017.10.103
MA0018.20.318
MA0019.10.805
MA0024.10.00942
MA0025.10.155
MA0027.10.355
MA0028.18.4276e-7
MA0029.10.145
MA0030.10.0686
MA0031.10.0278
MA0035.20.273
MA0038.10.159
MA0039.20.0196
MA0040.10.805
MA0041.10.772
MA0042.10.59
MA0043.10.0348
MA0046.10.313
MA0047.20.478
MA0048.10.476
MA0050.10.987
MA0051.10.191
MA0052.10.00401
MA0055.11.18465e-4
MA0057.10.947
MA0058.10.00191
MA0059.11.40039e-4
MA0060.15.62475e-7
MA0061.10.00133
MA0062.21.09545e-12
MA0065.20.0231
MA0066.10.00176
MA0067.10.326
MA0068.10.188
MA0069.10.766
MA0070.10.0993
MA0071.10.15
MA0072.10.124
MA0073.10.332
MA0074.10.909
MA0076.11.35825e-8
MA0077.10.197
MA0078.10.193
MA0079.20.679
MA0080.27.71595e-7
MA0081.10.0102
MA0083.11.88499e-14
MA0084.10.883
MA0087.10.926
MA0088.10.165
MA0090.10.0386
MA0091.10.164
MA0092.10.211
MA0093.10.00537
MA0099.22.2029e-21
MA0100.10.0358
MA0101.10.00235
MA0102.20.152
MA0103.10.0237
MA0104.23.867e-4
MA0105.11.39397e-6
MA0106.10.0709
MA0107.17.00303e-4
MA0108.26.88836e-6
MA0111.10.959
MA0112.20.0126
MA0113.10.715
MA0114.10.00606
MA0115.10.141
MA0116.14.328e-4
MA0117.10.471
MA0119.10.997
MA0122.10.914
MA0124.10.313
MA0125.10.575
MA0131.10.353
MA0135.10.436
MA0136.16.39458e-12
MA0137.20.924
MA0138.20.269
MA0139.10.17
MA0140.10.0653
MA0141.10.0282
MA0142.10.014
MA0143.10.726
MA0144.10.901
MA0145.10.416
MA0146.10.156
MA0147.11.17154e-4
MA0148.10.289
MA0149.10.105
MA0150.16.19699e-5
MA0152.10.526
MA0153.10.821
MA0154.10.00917
MA0155.10.823
MA0156.11.57829e-12
MA0157.10.283
MA0159.10.127
MA0160.10.0911
MA0162.10.311
MA0163.18.51351e-5
MA0164.10.467
MA0258.10.0141
MA0259.10.0348



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11755

Novel motifP-value
10.0479
100.234
1000.115
1010.434
1020.221
1030.0556
1040.459
1050.586
1060.403
1070.334
1080.861
1090.00398
110.0572
1100.16
1110.0742
1120.67
1130.196
1140.0624
1150.322
1160.128
1170.0138
1180.0596
1190.714
120.227
1200.0666
1210.253
1220.0847
1230.923
1240.654
1250.528
1260.734
1270.528
1280.464
1290.499
130.059
1300.738
1310.322
1320.0355
1330.166
1340.253
1350.135
1360.263
1370.556
1380.986
1390.869
140.896
1400.913
1410.794
1420.965
1430.00356
1440.325
1450.783
1460.379
1470.491
1480.397
1490.21
150.0145
1500.394
1510.773
1520.218
1530.0824
1540.872
1550.486
1560.246
1570.676
1580.606
1590.625
160.16
1600.751
1610.508
1620.589
1630.39
1640.11
1650.46
1660.0817
1670.231
1680.948
1690.392
170.449
180.0691
190.265
20.0603
200.0808
210.538
220.881
230.734
240.117
250.16
260.0678
270.765
280.479
290.00156
30.321
300.148
310.996
320.489
330.117
340.533
350.375
360.00846
370.13
380.503
390.405
40.127
400.00904
410.0199
420.253
430.274
440.967
450.492
460.19
470.059
480.171
490.378
50.682
500.798
510.553
520.31
530.709
540.996
550.77
560.659
570.476
580.58
590.464
60.639
600.856
610.286
620.389
630.409
640.177
650.782
660.00135
670.838
680.121
690.743
70.123
700.572
710.0475
720.621
730.0389
740.447
750.0208
760.189
770.433
780.102
790.333
80.191
800.0495
810.369
820.886
830.896
840.874
850.534
860.831
871.03148e-4
880.91
890.628
90.805
900.202
910.0499
920.57
930.013
940.0594
955.65349e-5
960.491
970.86
980.492
990.307



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11755


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001135 (smooth muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010048 (human smooth muscle - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

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