FF:10049-101G4: Difference between revisions

Latest revision as of 12:17, 3 June 2020

Name:	pancreas, adult, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11756
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	pancreas
dev stage	52 years old adult
sex	male
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Clontech
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	8081302A
catalog number	Cat:636577
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004858

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11756		CAGE		DRX008698		DRR009570

Accession ID Hg19

Library id		BAM		CTSS
CNhs11756		DRZ000995		DRZ002380

Accession ID Hg38

Library id		BAM		CTSS
CNhs11756		DRZ012345		DRZ013730

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.278
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.487
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0138
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.315
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.341
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.251
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.378
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.525
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.0717
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	1.781
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.619
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11756

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.917
MA0003.1	MA0003.1	0.316
MA0004.1	MA0004.1	0.11
MA0006.1	MA0006.1	0.248
MA0007.1	MA0007.1	0.0612
MA0009.1	MA0009.1	0.729
MA0014.1	MA0014.1	0.912
MA0017.1	MA0017.1	0.353
MA0018.2	MA0018.2	0.231
MA0019.1	MA0019.1	0.539
MA0024.1	MA0024.1	8.93872e-5
MA0025.1	MA0025.1	0.193
MA0027.1	MA0027.1	0.588
MA0028.1	MA0028.1	0.0244
MA0029.1	MA0029.1	0.319
MA0030.1	MA0030.1	0.108
MA0031.1	MA0031.1	0.487
MA0035.2	MA0035.2	0.00128
MA0038.1	MA0038.1	0.0151
MA0039.2	MA0039.2	0.736
MA0040.1	MA0040.1	0.846
MA0041.1	MA0041.1	0.478
MA0042.1	MA0042.1	0.682
MA0043.1	MA0043.1	0.224
MA0046.1	MA0046.1	3.32612e-37
MA0047.2	MA0047.2	0.117
MA0048.1	MA0048.1	0.00292
MA0050.1	MA0050.1	0.0117
MA0051.1	MA0051.1	0.0559
MA0052.1	MA0052.1	0.651
MA0055.1	MA0055.1	0.109
MA0057.1	MA0057.1	0.228
MA0058.1	MA0058.1	0.457
MA0059.1	MA0059.1	0.152
MA0060.1	MA0060.1	0.00955
MA0061.1	MA0061.1	1.45609e-4
MA0062.2	MA0062.2	1.28654e-4
MA0065.2	MA0065.2	0.0115
MA0066.1	MA0066.1	0.53
MA0067.1	MA0067.1	0.00899
MA0068.1	MA0068.1	0.00598
MA0069.1	MA0069.1	0.521
MA0070.1	MA0070.1	0.266
MA0071.1	MA0071.1	0.421
MA0072.1	MA0072.1	0.181
MA0073.1	MA0073.1	0.766
MA0074.1	MA0074.1	0.853
MA0076.1	MA0076.1	0.0175
MA0077.1	MA0077.1	0.415
MA0078.1	MA0078.1	0.159
MA0079.2	MA0079.2	0.308
MA0080.2	MA0080.2	3.85604e-4
MA0081.1	MA0081.1	0.00147
MA0083.1	MA0083.1	0.163
MA0084.1	MA0084.1	0.168
MA0087.1	MA0087.1	0.643
MA0088.1	MA0088.1	0.22
MA0090.1	MA0090.1	0.682
MA0091.1	MA0091.1	0.0348
MA0092.1	MA0092.1	0.412
MA0093.1	MA0093.1	0.228
MA0099.2	MA0099.2	6.35277e-13
MA0100.1	MA0100.1	0.0126
MA0101.1	MA0101.1	0.00262
MA0102.2	MA0102.2	0.527
MA0103.1	MA0103.1	1.30428e-9
MA0104.2	MA0104.2	0.278
MA0105.1	MA0105.1	1.75164e-5
MA0106.1	MA0106.1	0.361
MA0107.1	MA0107.1	7.18095e-4
MA0108.2	MA0108.2	3.3911e-4
MA0111.1	MA0111.1	0.991
MA0112.2	MA0112.2	0.0462
MA0113.1	MA0113.1	0.261
MA0114.1	MA0114.1	0.0366
MA0115.1	MA0115.1	0.115
MA0116.1	MA0116.1	0.594
MA0117.1	MA0117.1	0.418
MA0119.1	MA0119.1	0.958
MA0122.1	MA0122.1	0.604
MA0124.1	MA0124.1	0.72
MA0125.1	MA0125.1	0.729
MA0131.1	MA0131.1	0.898
MA0135.1	MA0135.1	0.89
MA0136.1	MA0136.1	2.41151e-5
MA0137.2	MA0137.2	0.721
MA0138.2	MA0138.2	0.0249
MA0139.1	MA0139.1	0.0451
MA0140.1	MA0140.1	0.194
MA0141.1	MA0141.1	0.00231
MA0142.1	MA0142.1	0.89
MA0143.1	MA0143.1	0.454
MA0144.1	MA0144.1	0.711
MA0145.1	MA0145.1	0.0548
MA0146.1	MA0146.1	0.0703
MA0147.1	MA0147.1	0.121
MA0148.1	MA0148.1	0.223
MA0149.1	MA0149.1	0.585
MA0150.1	MA0150.1	1.85407e-4
MA0152.1	MA0152.1	0.0741
MA0153.1	MA0153.1	7.92616e-15
MA0154.1	MA0154.1	0.793
MA0155.1	MA0155.1	0.542
MA0156.1	MA0156.1	1.06518e-4
MA0157.1	MA0157.1	0.982
MA0159.1	MA0159.1	0.069
MA0160.1	MA0160.1	0.271
MA0162.1	MA0162.1	0.857
MA0163.1	MA0163.1	0.0663
MA0164.1	MA0164.1	0.527
MA0258.1	MA0258.1	0.249
MA0259.1	MA0259.1	0.998

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11756

Novel motif	Logo	P-value
1	1	0.422
10	10	0.217
100	100	0.367
101	101	0.409
102	102	0.886
103	103	0.973
104	104	0.318
105	105	0.569
106	106	0.104
107	107	0.0483
108	108	0.504
109	109	0.356
11	11	0.445
110	110	0.775
111	111	0.828
112	112	0.096
113	113	0.527
114	114	0.987
115	115	0.391
116	116	0.0248
117	117	0.281
118	118	0.411
119	119	0.0146
12	12	0.636
120	120	0.303
121	121	0.381
122	122	0.221
123	123	2.14847e-4
124	124	0.694
125	125	0.539
126	126	0.843
127	127	0.753
128	128	0.0707
129	129	0.893
13	13	0.174
130	130	0.233
131	131	0.438
132	132	0.0397
133	133	0.379
134	134	0.738
135	135	0.71
136	136	0.738
137	137	0.0333
138	138	0.818
139	139	0.329
14	14	0.52
140	140	0.817
141	141	0.578
142	142	0.572
143	143	0.0256
144	144	0.773
145	145	0.149
146	146	0.232
147	147	0.693
148	148	0.674
149	149	0.302
15	15	0.736
150	150	0.841
151	151	0.0642
152	152	0.0281
153	153	0.138
154	154	0.402
155	155	0.325
156	156	0.577
157	157	0.637
158	158	0.733
159	159	0.211
16	16	0.798
160	160	0.734
161	161	0.907
162	162	0.585
163	163	0.268
164	164	0.621
165	165	0.942
166	166	0.529
167	167	0.811
168	168	0.858
169	169	0.0127
17	17	0.692
18	18	0.271
19	19	0.0214
2	2	0.0534
20	20	0.394
21	21	0.131
22	22	0.997
23	23	0.896
24	24	0.976
25	25	0.761
26	26	0.0772
27	27	0.629
28	28	0.979
29	29	0.332
3	3	0.655
30	30	0.423
31	31	0.377
32	32	0.592
33	33	0.85
34	34	0.797
35	35	0.576
36	36	0.487
37	37	0.828
38	38	0.212
39	39	0.501
4	4	0.79
40	40	0.587
41	41	0.0153
42	42	0.712
43	43	0.414
44	44	0.662
45	45	0.582
46	46	0.648
47	47	0.63
48	48	0.3
49	49	0.0875
5	5	0.9
50	50	0.816
51	51	0.933
52	52	0.238
53	53	0.607
54	54	0.363
55	55	0.916
56	56	0.602
57	57	0.722
58	58	0.558
59	59	0.203
6	6	0.746
60	60	0.288
61	61	0.821
62	62	0.776
63	63	0.411
64	64	0.46
65	65	0.213
66	66	0.0875
67	67	0.223
68	68	0.146
69	69	0.566
7	7	0.209
70	70	0.334
71	71	0.434
72	72	0.658
73	73	0.163
74	74	0.0211
75	75	0.445
76	76	0.768
77	77	0.015
78	78	0.154
79	79	0.715
8	8	0.134
80	80	0.261
81	81	0.894
82	82	0.636
83	83	0.498
84	84	0.424
85	85	0.0459
86	86	0.407
87	87	0.856
88	88	0.371
89	89	0.358
9	9	0.401
90	90	0.144
91	91	0.14
92	92	0.129
93	93	0.932
94	94	0.0533
95	95	0.826
96	96	0.506
97	97	0.637
98	98	0.563
99	99	0.456

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11756

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010049 human pancreas - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001264 (pancreas)
0002100 (trunk)
0000479 (tissue)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010049 (human pancreas - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00004858
+|accession_numbers=CAGE;DRX008698;DRR009570;DRZ000995;DRZ002380;DRZ012345;DRZ013730
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001264,UBERON:0002100,UBERON:0000479,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr20:43935474..43935490,+!p1@RBPJL!2.81!647.09!RBPJL;;chr7:97840743..97840786,+!p1@BHLHA15!2.65!447.03!BHLHA15;;chr10:23481233..23481249,+!p1@PTF1A!2.49!308.70!PTF1A;;chr22:29196433..29196445,-!p4@XBP1!2.37!255.56!XBP1;;chr1:40105299..40105326,-!p1@HEYL!2.19!153.96!HEYL;;chr1:199996733..199996781,+!p1@NR5A2!2.01!100.82!NR5A2;;chr8:11561684..11561751,+!p1@GATA4!1.95!87.53!GATA4;;chr1:27240455..27240474,-!p1@NR0B2!1.94!85.97!NR0B2;;chr15:53082521..53082549,-!p1@ONECUT1!1.92!82.06!ONECUT1;;chr1:201979743..201979762,+!p1@ELF3!1.89!76.59!ELF3;;chr19:46367576..46367592,+!p1@FOXA3!1.88!74.24!FOXA3;;chr22:29196492..29196503,-!p3@XBP1!1.86!108.63!XBP1;;chr1:151804244..151804310,-!p1@RORC!1.76!57.05!RORC;;chr1:200011711..200011752,+!p3@NR5A2!1.61!39.86!NR5A2;;chr3:126076242..126076257,-!p1@KLF15!1.60!48.45!KLF15;;chr20:22564895..22564910,-!p1@FOXA2!1.60!39.08!FOXA2;;chr20:42984330..42984364,+!p2@HNF4A!1.60!39.08!HNF4A;;chr1:214161272..214161322,+!p1@PROX1!1.59!52.36!PROX1;;chr11:34642612..34642646,+!p1@EHF!1.59!38.29!EHF;;chr7:156803329..156803362,-!p1@MNX1!1.56!35.17!MNX1;;chr1:40367668..40367684,-!p2@MYCL1!1.55!34.39!MYCL1;;chr18:19749541..19749557,+!p1@GATA6!1.54!101.60!GATA6;;chr22:29196547..29196563,-!p2@XBP1!1.51!1104.28!XBP1;;chr22:41763452..41763466,+!p2@TEF!1.49!29.70!TEF;;chr8:76319876..76319926,+!p1@HNF4G!1.48!28.92!HNF4G;;chr1:201979703..201979721,+!p2@ELF3!1.45!27.35!ELF3;;chr11:46299199..46299233,+!p1@CREB3L1!1.44!133.64!CREB3L1;;chr8:102504651..102504683,+!p1@GRHL2!1.44!26.57!GRHL2;;chr15:90611445..90611453,+!p27@ZNF710!1.43!25.79!ZNF710;;chr3:169381420..169381535,-!p1@MECOM!1.42!29.70!MECOM;;chr17:36105042..36105060,-!p1@HNF1B!1.42!25.01!HNF1B;;chr11:113930425..113930471,+!p1@ZBTB16!1.34!29.70!ZBTB16;;chr3:126076264..126076305,-!p2@KLF15!1.30!26.57!KLF15;;chr1:209979467..209979494,-!p1@IRF6!1.28!20.32!IRF6;;chr15:90611465..90611474,+!p29@ZNF710!1.26!17.19!ZNF710;;chrY:21906594..21906622,-!p1@KDM5D!1.26!17.19!KDM5D;;chr13:28494130..28494168,+!p1@PDX1!1.22!15.63!PDX1;;chr6:1312325..1312340,+!p1@FOXQ1!1.17!22.66!FOXQ1;;chr18:19749517..19749531,+!p3@GATA6!1.15!23.45!GATA6;;chr1:2985760..2985774,+!p1@PRDM16!1.15!13.29!PRDM16;;chr7:73038839..73038862,-!p1@MLXIPL!1.13!12.50!MLXIPL;;chr3:128212033..128212051,-!p1@GATA2!1.13!12.50!GATA2;;chr11:61520075..61520136,+!p1@C11orf9!1.12!25.79!C11orf9;;chr11:113930291..113930339,+!p2@ZBTB16!1.11!19.54!ZBTB16;;chr18:6414884..6414942,-!p1@L3MBTL4!1.11!14.85!L3MBTL4;;chr1:199996702..199996732,+!p5@NR5A2!1.10!11.72!NR5A2;;chr2:66662249..66662267,+!p2@MEIS1!1.09!43.76!MEIS1;;chr3:168864315..168864339,-!p2@MECOM!1.09!18.76!MECOM;;chr20:50159198..50159299,-!p1@NFATC2!1.09!16.41!NFATC2;;chr2:66662396..66662407,+!p4@MEIS1!1.08!10.94!MEIS1;;chr11:129245526..129245553,+!p1@BARX2!1.08!10.94!BARX2;;chr11:16419037..16419064,-!p3@SOX6!1.08!10.94!SOX6;;chr7:113726357..113726443,+!p1@FOXP2!1.07!18.76!FOXP2;;chr22:29196030..29196075,-!p5@XBP1!1.05!13.29!XBP1;;chr1:164528410..164528428,+!p1@PBX1!1.02!71.90!PBX1;;chr20:62680984..62680999,-!p1@SOX18!1.02!12.50!SOX18;;chr4:174451370..174451387,-!p1@HAND2!1.02!9.38!HAND2;;chr18:19749504..19749515,+!p5@GATA6!1.02!9.38!GATA6;;chr22:29196511..29196541,-!p1@XBP1!0.99!1009.72!XBP1;;chr1:199996831..199996843,+!p4@NR5A2!0.98!8.60!NR5A2;;chr16:85932760..85932775,+!p1@IRF8!0.98!8.60!IRF8;;chr11:113930401..113930422,+!p3@ZBTB16!0.98!8.60!ZBTB16;;chr17:70117153..70117174,+!p1@SOX9!0.96!86.75!SOX9;;chr2:60780753..60780800,-!p1@BCL11A!0.96!41.42!BCL11A;;chr19:33793430..33793447,-!p1@CEBPA!0.96!35.17!CEBPA;;chrX:25034067..25034088,-!p1@ARX!0.95!7.82!ARX;;chr1:200008734..200008765,+!p2@NR5A2!0.95!7.82!NR5A2;;chr19:46271505..46271575,-!p2@SIX5!0.94!20.32!SIX5;;chr17:53342311..53342400,+!p1@HLF!0.93!8.60!HLF;;chr1:164528340..164528379,+!p4@PBX1!0.92!18.76!PBX1;;chr11:64764435..64764449,-!p1@BATF2!0.92!10.16!BATF2;;chr11:47400078..47400106,-!p1@SPI1!0.90!7.03!SPI1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.90!7.03!SEBOX;;chr2:68592406..68592424,+!p1@PLEK!0.90!7.03!PLEK;;chr19:46801639..46801699,+!p1@HIF3A!0.90!7.03!HIF3A;;chr20:18038521..18038571,-!p1@OVOL2!0.90!7.03!OVOL2;;chr1:40367530..40367597,-!p1@MYCL1!0.89!12.50!MYCL1;;chr1:164528687..164528711,+!p6@PBX1!0.88!7.82!PBX1;;chr1:8763296..8763339,-!p9@RERE!0.87!16.41!RERE;;chr10:43134001..43134026,-!p1@ZNF33B!0.86!29.70!ZNF33B;;chr2:66662895..66662907,+!p3@MEIS1!0.86!7.82!MEIS1;;chr20:22565370..22565388,-!p2@FOXA2!0.86!6.25!FOXA2;;chr5:50679228..50679288,+!p1@ISL1!0.86!6.25!ISL1;;chr7:63505799..63505904,+!p1@ZNF727!0.86!6.25!ZNF727;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.86!6.25!SEBOX;;chrY:2803415..2803468,+!p1@ZFY!0.86!6.25!ZFY;;chr1:61548225..61548299,+!p1@NFIA!0.85!85.19!NFIA;;chr10:94449703..94449718,+!p1@HHEX!0.85!25.01!HHEX;;chr3:71632864..71632885,-!p4@FOXP1!0.84!21.10!FOXP1;;chr6:19837592..19837621,+!p1@ID4!0.83!37.51!ID4;;chr2:46524897..46524911,+!p2@EPAS1!0.83!17.19!EPAS1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.82!12.50!ZNF395;;chr12:3068501..3068515,+!p4@TEAD4!0.82!10.16!TEAD4;;chr12:52445218..52445237,+!p1@NR4A1!0.81!74.24!NR4A1;;chrX:131623044..131623089,-!p1@MBNL3!0.81!24.23!MBNL3;;chr2:60780607..60780624,-!p2@BCL11A!0.81!17.97!BCL11A;;chr7:6655225..6655279,+!p1@ENST00000457543!0.81!8.60!ZNF853;;chr3:169381183..169381205,-!p4@MECOM!0.81!5.47!MECOM;;chrX:107018836..107018862,-!p8@TSC22D3!0.81!5.47!TSC22D3;;chr10:135122868..135122893,+!p3@ZNF511!0.81!5.47!ZNF511;;chr11:125034640..125034655,+!p1@PKNOX2!0.81!5.47!PKNOX2;;chr11:31825588..31825613,-!p8@PAX6!0.81!5.47!PAX6;;chr1:40105347..40105358,-!p2@HEYL!0.81!5.47!HEYL;;chr2:10183651..10183713,+!p1@KLF11!0.80!42.20!KLF11;;chr19:3359257..3359362,+!p3@NFIC!0.80!17.19!NFIC;;chr18:19749386..19749404,+!p2@GATA6!0.80!7.82!GATA6;;chr3:42947600..42947680,+!p1@ZNF662!0.80!7.82!ZNF662;;chr5:138647473..138647476,+!p6@MATR3!0.79!14.07!MATR3;;chr1:164528384..164528409,+!p3@PBX1!0.77!16.41!PBX1;;chr1:10754477..10754517,-!p1@CASZ1!0.77!8.60!CASZ1;;chr19:3359591..3359667,+!p2@NFIC!0.76!60.18!NFIC;;chr2:66662281..66662308,+!p1@MEIS1!0.76!17.97!MEIS1;;chr12:3068957..3068978,+!p6@TEAD4!0.76!5.47!TEAD4;;chr10:101292684..101292706,+!p1@NKX2-3!0.76!4.69!NKX2-3;;chr11:113930355..113930366,+!p5@ZBTB16!0.76!4.69!ZBTB16;;chr13:28494109..28494122,+!p2@PDX1!0.76!4.69!PDX1;;chr15:53082178..53082190,-!p3@ONECUT1!0.76!4.69!ONECUT1;;chr17:36105074..36105086,-!p2@HNF1B!0.76!4.69!HNF1B;;chr8:25902876..25902936,-!p1@EBF2!0.76!4.69!EBF2;;chr2:182545234..182545252,-!p1@NEUROD1!0.76!4.69!NEUROD1;;chr4:149363494..149363543,-!p1@NR3C2!0.76!4.69!NR3C2;;chr1:214161328..214161348,+!p2@PROX1!0.76!4.69!PROX1;;chr1:42801540..42801562,-!p4@FOXJ3!0.76!4.69!FOXJ3;;chr21:39870339..39870443,-!p1@ERG!0.76!4.69!ERG;;chr3:18466787..18466839,-!p1@SATB1!0.75!22.66!SATB1;;chr6:108881012..108881034,+!p3@FOXO3!0.75!17.97!FOXO3;;chr19:3366570..3366619,+!p1@NFIC!0.73!157.87!NFIC;;chr10:111985713..111985774,+!p2@MXI1!0.73!46.11!MXI1;;chr17:41622765..41622821,-!p2@ETV4!0.73!7.03!ETV4;;chr4:38665883..38665922,+!p3@KLF3!0.71!17.19!KLF3;;chrX:101186981..101187030,-!p1@ZMAT1!0.71!14.85!ZMAT1;;chr12:3068466..3068495,+!p3@TEAD4!0.70!9.38!TEAD4;;chr13:72441315..72441454,-!p1@DACH1!0.70!8.60!DACH1;;chr3:71632840..71632857,-!p10@FOXP1!0.70!8.60!FOXP1;;chr1:164528297..164528309,+!p9@PBX1!0.70!5.47!PBX1;;chr16:88519669..88519726,+!p1@ZFPM1!0.69!39.86!ZFPM1;;chr1:164528616..164528660,+!p5@PBX1!0.69!8.60!PBX1;;chr8:81397876..81397898,+!p5@ZBTB10!0.69!4.69!ZBTB10;;chr1:199996859..199996870,+!p8@NR5A2!0.69!3.91!NR5A2;;chr1:217250308..217250349,-!p9@ESRRG!0.69!3.91!ESRRG;;chr1:40105336..40105343,-!p4@HEYL!0.69!3.91!HEYL;;chr20:20348740..20348757,+!p1@INSM1!0.69!3.91!INSM1;;chr11:128457446..128457461,-!p4@ETS1!0.69!3.91!ETS1;;chr13:28543431..28543487,-!p1@CDX2!0.69!3.91!CDX2;;chr14:105267423..105267443,+!p2@ZBTB42!0.69!3.91!ZBTB42;;chr18:55102628..55102646,+!p2@ONECUT2!0.69!3.91!ONECUT2;;chr17:38256822..38256851,-!p1@NR1D1!0.68!34.39!NR1D1;;chr6:7107999..7108031,+!p2@RREB1!0.68!22.66!RREB1;;chrX:107018969..107019024,-!p6@TSC22D3!0.68!5.47!TSC22D3;;chr12:10865870..10865888,-!p6@CSDA!0.68!5.47!CSDA;;chr13:41240737..41240787,-!p1@FOXO1!0.67!50.02!FOXO1;;chr13:41635285..41635356,-!p3@ELF1!0.67!17.19!ELF1;;chr7:138666053..138666146,-!p1@KIAA1549!0.67!17.19!KIAA1549;;chr6:126240356..126240379,+!p7@NCOA7!0.67!4.69!NCOA7;;chr1:161736038..161736056,+!p4@ATF6!0.66!9.38!ATF6;;chr20:35202909..35202963,+!p2@TGIF2,p3@C20orf24!0.66!5.47!TGIF2;;chr4:87928413..87928433,+!p3@AFF1!0.65!25.01!AFF1;;chr15:60884747..60884774,-!p3@RORA!0.65!9.38!RORA;;chr17:61919985..61920012,-!p3@SMARCD2!0.65!9.38!SMARCD2;;chr5:76383133..76383186,-!p2@ZBED3!0.65!7.82!ZBED3;;chr12:125003087..125003141,-!p4@NCOR2!0.65!4.69!NCOR2;;chr9:4300050..4300118,-!p1@GLIS3!0.64!25.79!GLIS3;;chr15:85144229..85144273,+!p1@ZSCAN2!0.64!21.10!ZSCAN2;;chr1:8763440..8763460,-!p2@RERE!0.64!19.54!RERE;;chr6:91006518..91006570,-!p1@BACH2!0.64!8.60!BACH2;;chr8:28243661..28243709,-!p1@ZNF395!0.63!21.88!ZNF395;;chr2:101436564..101436647,+!p1@NPAS2!0.62!78.15!NPAS2;;chr10:77161504..77161530,-!p1@ZNF503!0.62!50.02!ZNF503;;chr13:41240717..41240735,-!p2@FOXO1!0.62!25.79!FOXO1;;chr19:56111680..56111716,+!p1@ZNF524!0.62!14.07!ZNF524;;chr2:239148671..239148686,-!p1@HES6!0.62!13.29!HES6;;chr19:53445819..53445860,-!p2@ZNF321P,p2@ZNF816-ZNF321P,p2@ZNF816!0.62!10.94!ZNF321P;;chr9:114287433..114287513,+!p1@ZNF483!0.62!9.38!ZNF483;;chr7:128577972..128578047,+!p1@IRF5!0.62!5.47!IRF5;;chr20:2673383..2673441,+!p1@EBF4!0.62!5.47!EBF4;;chr9:4299959..4299974,-!p4@GLIS3!0.62!5.47!GLIS3;;chr12:432372..432377,-!p3@KDM5A!0.62!5.47!KDM5A;;chr11:31839488..31839515,-!p3@PAX6!0.62!3.13!PAX6;;chr11:34642656..34642667,+!p2@EHF!0.62!3.13!EHF;;chr11:46333979..46333991,+!p7@CREB3L1!0.62!3.13!CREB3L1;;chr12:52437488..52437507,+!p2@NR4A1!0.62!3.13!NR4A1;;chr6:100912752..100912778,-!p2@SIM1!0.62!3.13!SIM1;;chr6:1312155..1312187,+!p2@FOXQ1!0.62!3.13!FOXQ1;;chr6:134210243..134210257,+!p1@TCF21!0.62!3.13!TCF21;;chr8:55370487..55370503,+!p1@SOX17!0.62!3.13!SOX17;;chr1:214161358..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L1!0.25!0.78!LYL1;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.25!0.78!ZNF676;;chr19:22605097..22605121,-!p2@ZNF98!0.25!0.78!ZNF98;;chr19:22605136..22605154,-!p1@ZNF98!0.25!0.78!ZNF98;;chr19:31840278..31840300,-!p5@TSHZ3!0.25!0.78!TSHZ3;;chr19:3359158..3359209,+!p5@NFIC!0.25!0.78!NFIC;;chr19:3366429..3366439,+!p16@NFIC!0.25!0.78!NFIC;;chr19:35417924..35417935,+!p5@ZNF30!0.25!0.78!ZNF30;;chr19:37464453..37464515,+!p4@ZNF568!0.25!0.78!ZNF568;;chr10:101292731..101292741,+!p2@NKX2-3!0.25!0.78!NKX2-3;;chr10:111985777..111985788,+!p4@MXI1!0.25!0.78!MXI1;;chr10:114710430..114710470,+!p30@TCF7L2!0.25!0.78!TCF7L2;;chr10:114886551..114886601,+!p11@TCF7L2!0.25!0.78!TCF7L2;;chr10:124768217..124768228,-!p2@IKZF5!0.25!0.78!IKZF5;;chr10:131635619..131635623,-!p6@EBF3!0.25!0.78!EBF3;;chr10:131762504..131762555,-!p1@EBF3!0.25!0.78!EBF3;;chr10:135122906..135122921,+!p4@ZNF511!0.25!0.78!ZNF511;;chr11:113930477..113930488,+!p4@ZBTB16!0.25!0.78!ZBTB16;;chr11:113930955..113930969,+!p8@ZBTB16!0.25!0.78!ZBTB16;;chr11:15989432..15989436,-!p17@SOX6!0.25!0.78!SOX6;;chr11:16133391..16133439,-!p6@SOX6!0.25!0.78!SOX6;;chr11:2292226..2292270,-!p1@ASCL2!0.25!0.78!ASCL2;;chr11:31832658..31832681,-!p1@PAX6!0.25!0.78!PAX6;;chr11:34645791..34645836,+!p3@EHF!0.25!0.78!EHF;;chr11:34663913..34663945,+!p6@EHF!0.25!0.78!EHF;;chr11:34664014..34664045,+!p4@EHF!0.25!0.78!EHF;;chr11:47279167..47279178,+!p10@NR1H3!0.25!0.78!NR1H3;;chr11:47399920..47399931,-!p7@SPI1!0.25!0.78!SPI1;;chr11:47399947..47399961,-!p3@SPI1!0.25!0.78!SPI1;;chr12:104531768..104531782,-!p7@NFYB!0.25!0.78!NFYB;;chr12:106976678..106976708,+!p2@RFX4!0.25!0.78!RFX4;;chr12:108154762..108154776,-!p4@PRDM4!0.25!0.78!PRDM4;;chr12:10856713..10856723,-!p23@CSDA!0.25!0.78!CSDA;;chr12:10865908..10865915,-!p37@CSDA!0.25!0.78!CSDA;;chr12:121416455..121416479,+!p2@HNF1A!0.25!0.78!HNF1A;;chr12:124496534..124496544,+!p6@ZNF664!0.25!0.78!ZNF664;;chr12:124915257..124915277,-!p23@NCOR2!0.25!0.78!NCOR2;;chr12:125003168..125003180,-!p15@NCOR2!0.25!0.78!NCOR2;;chr12:12794994..12795024,+!p5@CREBL2!0.25!0.78!CREBL2;;chr12:26277994..26278001,-!p6@BHLHE41!0.25!0.78!BHLHE41;;chr12:54394059..54394088,+!p3@HOXC9!0.25!0.78!HOXC9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.25!0.78!HOXC5;;chr12:54447637..54447659,+!p4@HOXC4!0.25!0.78!HOXC4;;chr12:54778471..54778528,-!p1@ZNF385A!0.25!0.78!ZNF385A;;chr12:56415287..56415300,+!p5@IKZF4!0.25!0.78!IKZF4;;chr13:28494375..28494416,+!p4@PDX1!0.25!0.78!PDX1;;chr13:28541455..28541475,-!p7@CDX2!0.25!0.78!CDX2;;chr13:28541477..28541493,-!p6@CDX2!0.25!0.78!CDX2;;chr13:28543316..28543329,-!p4@CDX2!0.25!0.78!CDX2;;chr13:28543388..28543406,-!p3@CDX2!0.25!0.78!CDX2;;chr13:37494391..37494406,-!p5@SMAD9!0.25!0.78!SMAD9;;chr13:41556678..41556692,-!p15@ELF1!0.25!0.78!ELF1;;chr13:45010776..45010795,-!p13@TSC22D1!0.25!0.78!TSC22D1;;chr13:45150455..45150472,-!p8@TSC22D1!0.25!0.78!TSC22D1;;chr13:72440434..72440479,-!p6@DACH1!0.25!0.78!DACH1;;chr13:72440693..72440706,-!p15@DACH1!0.25!0.78!DACH1;;chr13:72440726..72440736,-!p19@DACH1!0.25!0.78!DACH1;;chr13:72440772..72440847,-!p5@DACH1!0.25!0.78!DACH1;;chr13:73636440..73636451,+!p9@KLF5!0.25!0.78!KLF5;;chr14:35872542..35872553,-!p10@NFKBIA!0.25!0.78!NFKBIA;;chr14:35874077..35874091,-!p8@NFKBIA!0.25!0.78!NFKBIA;;chr14:61190359..61190385,-!p4@SIX4!0.25!0.78!SIX4;;chr21:40181520..40181558,+!p11@ETS2!0.25!0.78!ETS2;;chr21:47063590..47063597,+!p2@PCBP3!0.25!0.78!PCBP3;;chr22:31739411..31739446,-!p5@PATZ1!0.25!0.78!PATZ1;;chr22:42739533..42739586,-!p2@ENST00000515426!0.25!0.78!TCF20;;chr22:46546390..46546401,+!p3@PPARA!0.25!0.78!PPARA;;chr2:100721281..100721307,-!p5@AFF3!0.25!0.78!AFF3;;
+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001264;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002323
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 37: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pancreas%252c%2520adult%252c%2520donor1.CNhs11756.10049-101G4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pancreas%252c%2520adult%252c%2520donor1.CNhs11756.10049-101G4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pancreas%252c%2520adult%252c%2520donor1.CNhs11756.10049-101G4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/pancreas%252c%2520adult%252c%2520donor1.CNhs11756.10049-101G4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/pancreas%252c%2520adult%252c%2520donor1.CNhs11756.10049-101G4.hg38.nobarcode.ctss.bed.gz
 |id=FF:10049-101G4
 |is_a=EFO:0002091;;FF:0010049
 |is_obsolete=
+|library_id=CNhs11756
+|library_id_phase_based=2:CNhs11756
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10049
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10049
 |name=pancreas, adult, donor1
 |namespace=FANTOM5
@@ Line 45: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11756,LSID820,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=101
 |rna_catalog_number=Cat:636577
@@ Line 60: / Line 78: @@
 |rna_weight_ug=50
 |sample_age=
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 81: / Line 100: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10049-101G4;search_select_hide=table117:FF:10049-101G4
 }}

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FF:10049-101G4: Difference between revisions

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Latest revision as of 12:17, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0