FF:10052-101G7: Difference between revisions

Latest revision as of 12:17, 3 June 2020

Name:	aorta, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs11760
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	aorta
dev stage	27-45 years old adult
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Clontech
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	9052725A
catalog number	Cat:636546
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004809

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11760		CAGE		DRX008619		DRR009491

Accession ID Hg19

Library id		BAM		CTSS
CNhs11760		DRZ000916		DRZ002301

Accession ID Hg38

Library id		BAM		CTSS
CNhs11760		DRZ012266		DRZ013651

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.129
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.383
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.414
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.0789
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0789
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.0731
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.304
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0288
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.0789
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0789
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.0348
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.146
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.119
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.133
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.187
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.3
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0789
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.321
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.112
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.793
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0.00595
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.133
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.0789
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.0644
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.0789
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	1.063
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.343
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.3
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.256
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.461
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0.204
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.342
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0789
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0791
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0885
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.204
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0711
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.0789
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.0789
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0789
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.146
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.629
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.511
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.579
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0.379
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	1.219
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0.0789
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0789
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.175
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.255
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0789
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.0193
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0625
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.255
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.112
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.642
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.146
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.255
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0789
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.0392
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.414
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0.342
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11760

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0144
MA0003.1	MA0003.1	0.478
MA0004.1	MA0004.1	0.0278
MA0006.1	MA0006.1	0.41
MA0007.1	MA0007.1	0.279
MA0009.1	MA0009.1	0.398
MA0014.1	MA0014.1	0.295
MA0017.1	MA0017.1	0.137
MA0018.2	MA0018.2	0.367
MA0019.1	MA0019.1	0.494
MA0024.1	MA0024.1	0.0029
MA0025.1	MA0025.1	0.43
MA0027.1	MA0027.1	0.444
MA0028.1	MA0028.1	8.13921e-8
MA0029.1	MA0029.1	0.294
MA0030.1	MA0030.1	0.0819
MA0031.1	MA0031.1	0.337
MA0035.2	MA0035.2	0.0503
MA0038.1	MA0038.1	0.371
MA0039.2	MA0039.2	0.83
MA0040.1	MA0040.1	0.446
MA0041.1	MA0041.1	0.657
MA0042.1	MA0042.1	0.826
MA0043.1	MA0043.1	0.736
MA0046.1	MA0046.1	0.266
MA0047.2	MA0047.2	0.313
MA0048.1	MA0048.1	0.308
MA0050.1	MA0050.1	0.884
MA0051.1	MA0051.1	0.277
MA0052.1	MA0052.1	2.93422e-9
MA0055.1	MA0055.1	0.0023
MA0057.1	MA0057.1	0.95
MA0058.1	MA0058.1	0.0046
MA0059.1	MA0059.1	6.74476e-4
MA0060.1	MA0060.1	4.57177e-4
MA0061.1	MA0061.1	0.00175
MA0062.2	MA0062.2	1.84257e-11
MA0065.2	MA0065.2	0.0245
MA0066.1	MA0066.1	0.00508
MA0067.1	MA0067.1	0.467
MA0068.1	MA0068.1	0.0123
MA0069.1	MA0069.1	0.694
MA0070.1	MA0070.1	0.476
MA0071.1	MA0071.1	0.0645
MA0072.1	MA0072.1	0.0225
MA0073.1	MA0073.1	0.675
MA0074.1	MA0074.1	0.538
MA0076.1	MA0076.1	1.67904e-10
MA0077.1	MA0077.1	0.756
MA0078.1	MA0078.1	0.287
MA0079.2	MA0079.2	0.281
MA0080.2	MA0080.2	0.0117
MA0081.1	MA0081.1	0.00915
MA0083.1	MA0083.1	8.08491e-9
MA0084.1	MA0084.1	0.78
MA0087.1	MA0087.1	0.698
MA0088.1	MA0088.1	0.00724
MA0090.1	MA0090.1	0.0296
MA0091.1	MA0091.1	0.883
MA0092.1	MA0092.1	0.769
MA0093.1	MA0093.1	0.0155
MA0099.2	MA0099.2	2.0959e-13
MA0100.1	MA0100.1	0.0095
MA0101.1	MA0101.1	0.0204
MA0102.2	MA0102.2	0.344
MA0103.1	MA0103.1	0.599
MA0104.2	MA0104.2	2.21639e-4
MA0105.1	MA0105.1	4.91241e-7
MA0106.1	MA0106.1	0.0422
MA0107.1	MA0107.1	0.0115
MA0108.2	MA0108.2	1.70121e-22
MA0111.1	MA0111.1	0.563
MA0112.2	MA0112.2	0.0904
MA0113.1	MA0113.1	0.839
MA0114.1	MA0114.1	0.014
MA0115.1	MA0115.1	0.294
MA0116.1	MA0116.1	0.00414
MA0117.1	MA0117.1	0.325
MA0119.1	MA0119.1	0.668
MA0122.1	MA0122.1	0.476
MA0124.1	MA0124.1	0.954
MA0125.1	MA0125.1	0.77
MA0131.1	MA0131.1	0.429
MA0135.1	MA0135.1	0.874
MA0136.1	MA0136.1	6.22399e-7
MA0137.2	MA0137.2	0.141
MA0138.2	MA0138.2	0.139
MA0139.1	MA0139.1	0.185
MA0140.1	MA0140.1	0.00439
MA0141.1	MA0141.1	0.0168
MA0142.1	MA0142.1	0.0968
MA0143.1	MA0143.1	0.901
MA0144.1	MA0144.1	0.16
MA0145.1	MA0145.1	0.516
MA0146.1	MA0146.1	0.36
MA0147.1	MA0147.1	6.77169e-5
MA0148.1	MA0148.1	0.332
MA0149.1	MA0149.1	0.0428
MA0150.1	MA0150.1	9.9117e-5
MA0152.1	MA0152.1	0.284
MA0153.1	MA0153.1	0.512
MA0154.1	MA0154.1	0.102
MA0155.1	MA0155.1	0.727
MA0156.1	MA0156.1	3.30847e-7
MA0157.1	MA0157.1	0.982
MA0159.1	MA0159.1	0.159
MA0160.1	MA0160.1	0.0313
MA0162.1	MA0162.1	0.915
MA0163.1	MA0163.1	8.55747e-9
MA0164.1	MA0164.1	0.705
MA0258.1	MA0258.1	0.0729
MA0259.1	MA0259.1	0.0325

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11760

Novel motif	Logo	P-value
1	1	0.0211
10	10	0.0577
100	100	0.149
101	101	0.953
102	102	0.418
103	103	0.024
104	104	0.358
105	105	0.486
106	106	0.625
107	107	0.0849
108	108	0.538
109	109	0.024
11	11	0.132
110	110	0.127
111	111	0.0953
112	112	0.912
113	113	0.0592
114	114	0.0995
115	115	0.147
116	116	0.274
117	117	0.0156
118	118	0.0292
119	119	0.816
12	12	0.482
120	120	0.225
121	121	0.644
122	122	0.145
123	123	0.606
124	124	0.307
125	125	0.092
126	126	0.507
127	127	0.325
128	128	0.228
129	129	0.0353
13	13	0.0261
130	130	0.449
131	131	0.516
132	132	0.01
133	133	0.00218
134	134	0.107
135	135	0.303
136	136	0.404
137	137	0.453
138	138	0.995
139	139	0.704
14	14	0.963
140	140	0.812
141	141	0.245
142	142	0.238
143	143	0.0196
144	144	0.707
145	145	0.527
146	146	0.361
147	147	0.603
148	148	0.374
149	149	0.34
15	15	0.016
150	150	0.577
151	151	0.878
152	152	0.443
153	153	0.734
154	154	0.708
155	155	0.313
156	156	0.692
157	157	0.64
158	158	0.424
159	159	0.567
16	16	0.349
160	160	0.768
161	161	0.99
162	162	0.958
163	163	0.439
164	164	0.0994
165	165	0.742
166	166	0.091
167	167	0.0473
168	168	0.846
169	169	0.872
17	17	0.694
18	18	0.014
19	19	0.331
2	2	0.0468
20	20	0.105
21	21	0.395
22	22	0.863
23	23	0.241
24	24	0.133
25	25	0.386
26	26	0.164
27	27	0.848
28	28	0.7
29	29	0.00228
3	3	0.157
30	30	0.0504
31	31	0.834
32	32	0.674
33	33	0.109
34	34	0.328
35	35	0.154
36	36	0.00777
37	37	0.178
38	38	0.732
39	39	0.153
4	4	0.324
40	40	0.0658
41	41	0.06
42	42	0.178
43	43	0.2
44	44	0.822
45	45	0.408
46	46	0.149
47	47	0.0634
48	48	0.135
49	49	0.151
5	5	0.286
50	50	0.475
51	51	0.389
52	52	0.12
53	53	0.371
54	54	0.904
55	55	0.946
56	56	0.878
57	57	0.205
58	58	0.717
59	59	0.658
6	6	0.714
60	60	0.583
61	61	0.313
62	62	0.532
63	63	0.974
64	64	0.248
65	65	0.75
66	66	7.70921e-4
67	67	0.8
68	68	0.122
69	69	0.689
7	7	0.274
70	70	0.134
71	71	0.0238
72	72	0.338
73	73	0.266
74	74	0.469
75	75	0.00822
76	76	0.0205
77	77	0.0867
78	78	0.0147
79	79	0.393
8	8	0.205
80	80	0.6
81	81	0.657
82	82	0.9
83	83	0.922
84	84	0.867
85	85	0.252
86	86	0.775
87	87	0.00973
88	88	0.78
89	89	0.642
9	9	0.596
90	90	0.0159
91	91	0.496
92	92	0.522
93	93	0.00703
94	94	0.0144
95	95	0.00499
96	96	0.636
97	97	0.999
98	98	0.12
99	99	0.892

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11760

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010052 human aorta - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010052 (human aorta - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0006965 (vascular cord)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008511
+|DRA_sample_Accession=CAGE@SAMD00004809
-|accession_numbers=CAGE;DRX008619;DRR009491;DRZ000916;DRZ002301
+|accession_numbers=CAGE;DRX008619;DRR009491;DRZ000916;DRZ002301;DRZ012266;DRZ013651
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0004572,UBERON:0004537,UBERON:0001009
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr12:52437488..52437507,+!p2@NR4A1!2.22!164.98!NR4A1;;chr1:40105299..40105326,-!p1@HEYL!2.09!123.33!HEYL;;chr2:19558373..19558392,-!p1@OSR1!2.00!263.01!OSR1;;chr20:30433396..30433414,-!p1@FOXS1!1.94!85.28!FOXS1;;chr11:113930425..113930471,+!p1@ZBTB16!1.83!94.44!ZBTB16;;chr7:44143978..44143989,+!p2@AEBP1!1.71!89.06!AEBP1;;chr7:44143925..44143970,+!p1@AEBP1!1.70!1037.29!AEBP1;;chr19:46801639..46801699,+!p1@HIF3A!1.66!44.83!HIF3A;;chr11:34642612..34642646,+!p1@EHF!1.66!44.23!EHF;;chr4:174451370..174451387,-!p1@HAND2!1.66!44.23!HAND2;;chr6:1610293..1610310,+!p1@FOXC1!1.65!70.93!FOXC1;;chr16:86600426..86600441,+!p1@FOXC2!1.63!99.42!FOXC2;;chr12:52445218..52445237,+!p1@NR4A1!1.62!485.17!NR4A1;;chr6:126070769..126070801,+!p1@HEY2!1.62!46.62!HEY2;;chr1:201979703..201979721,+!p2@ELF3!1.62!40.45!ELF3;;chr6:19837592..19837621,+!p1@ID4!1.61!230.73!ID4;;chr20:50179368..50179392,-!p2@NFATC2!1.60!50.21!NFATC2;;chr17:53342311..53342400,+!p1@HLF!1.57!41.64!HLF;;chr5:122424955..122424988,+!p2@PRDM6!1.57!36.46!PRDM6;;chr5:122424918..122424944,+!p1@PRDM6!1.56!35.27!PRDM6;;chr20:62680984..62680999,-!p1@SOX18!1.55!45.23!SOX18;;chr7:44143997..44144008,+!p3@AEBP1!1.54!42.24!AEBP1;;chr18:19749541..19749557,+!p1@GATA6!1.45!83.68!GATA6;;chr5:158526917..158526932,-!p1@EBF1!1.45!65.75!EBF1;;chr21:40032558..40032578,-!p5@ERG!1.43!25.90!ERG;;chr3:21792682..21792720,-!p1@ZNF385D!1.41!24.91!ZNF385D;;chr4:174450089..174450153,-!p2@HAND2!1.41!24.71!HAND2;;chr19:54058073..54058088,+!p1@ZNF331!1.40!24.31!ZNF331;;chr1:201979743..201979762,+!p1@ELF3!1.38!22.91!ELF3;;chr19:45971246..45971265,+!p1@FOSB!1.37!399.89!FOSB;;chr1:61548374..61548415,+!p4@NFIA!1.36!40.65!NFIA;;chr1:170632285..170632309,+!p1@PRRX1!1.36!24.51!PRRX1;;chr3:169381420..169381535,-!p1@MECOM!1.35!24.91!MECOM;;chr6:85474299..85474324,-!p1@TBX18!1.33!35.86!TBX18;;chr1:61548225..61548299,+!p1@NFIA!1.32!254.04!NFIA;;chr19:54041669..54041697,+!p2@ZNF331!1.32!19.73!ZNF331;;chrY:21906594..21906622,-!p1@KDM5D!1.31!19.53!KDM5D;;chr9:132427883..132427951,+!p2@PRRX2!1.31!19.33!PRRX2;;chr11:113930401..113930422,+!p3@ZBTB16!1.31!19.33!ZBTB16;;chr1:2985760..2985774,+!p1@PRDM16!1.30!19.13!PRDM16;;chr3:24536253..24536328,-!p1@THRB!1.29!34.47!THRB;;chr9:102584159..102584174,+!p2@NR4A3!1.29!32.68!NR4A3;;chr17:38256822..38256851,-!p1@NR1D1!1.28!139.27!NR1D1;;chr9:132427972..132428056,+!p1@PRRX2!1.28!23.31!PRRX2;;chr18:19749517..19749531,+!p3@GATA6!1.27!31.08!GATA6;;chr18:77155922..77155939,+!p1@NFATC1!1.26!46.62!NFATC1;;chr8:25902876..25902936,-!p1@EBF2!1.26!17.33!EBF2;;chr14:75745523..75745537,+!p1@FOS!1.24!1930.91!FOS;;chrX:106960180..106960197,-!p2@TSC22D3!1.24!61.57!TSC22D3;;chr1:61548069..61548102,+!p3@NFIA!1.24!39.05!NFIA;;chr11:113930291..113930339,+!p2@ZBTB16!1.23!25.70!ZBTB16;;chr3:181429704..181429722,+!p1@SOX2!1.23!15.94!SOX2;;chr8:106330656..106330684,+!p1@ZFPM2!1.22!40.45!ZFPM2;;chr2:97202480..97202499,+!p1@ARID5A!1.21!150.43!ARID5A;;chr3:126076242..126076257,-!p1@KLF15!1.21!18.93!KLF15;;chr2:157189180..157189290,-!p1@NR4A2!1.20!77.31!NR4A2;;chr2:122042770..122042785,-!p1@TFCP2L1!1.20!14.94!TFCP2L1;;chr8:55370487..55370503,+!p1@SOX17!1.19!14.35!SOX17;;chr16:85932760..85932775,+!p1@IRF8!1.19!14.35!IRF8;;chr1:2985726..2985752,+!p2@PRDM16!1.19!14.35!PRDM16;;chr21:39870339..39870443,-!p1@ERG!1.19!14.35!ERG;;chr3:21792585..21792625,-!p2@ZNF385D!1.16!15.14!ZNF385D;;chr11:47400078..47400106,-!p1@SPI1!1.16!13.35!SPI1;;chr21:40032581..40032605,-!p4@ERG!1.15!13.15!ERG;;chr3:24536485..24536500,-!p3@THRB!1.14!12.95!THRB;;chr3:71294213..71294240,-!p30@FOXP1!1.14!12.75!FOXP1;;chr5:158527104..158527135,-!p4@EBF1!1.14!12.75!EBF1;;chr11:125034640..125034655,+!p1@PKNOX2!1.13!12.35!PKNOX2;;chr5:137804484..137804498,+!p2@EGR1!1.12!49.02!EGR1;;chr12:26277956..26277980,-!p1@BHLHE41!1.12!43.83!BHLHE41;;chr1:212782094..212782109,+!p1@ATF3!1.11!324.97!ATF3;;chr15:42749722..42749739,-!p2@ZFP106!1.11!21.52!ZFP106;;chr18:45935720..45935772,-!p1@ZBTB7C!1.11!11.95!ZBTB7C;;chr5:88178983..88179012,-!p1@MEF2C!1.10!89.86!MEF2C;;chr16:86600870..86600921,+!p2@FOXC2!1.10!11.56!FOXC2;;chr3:169381183..169381205,-!p4@MECOM!1.10!11.56!MECOM;;chr4:174451350..174451363,-!p3@HAND2!1.10!11.56!HAND2;;chr18:19749386..19749404,+!p2@GATA6!1.09!16.34!GATA6;;chr20:51588873..51588953,+!p1@TSHZ2!1.09!15.14!TSHZ2;;chr22:41763452..41763466,+!p2@TEF!1.09!11.36!TEF;;chr8:22550982..22550999,-!p1@EGR3!1.08!31.08!EGR3;;chr7:113726357..113726443,+!p1@FOXP2!1.08!19.13!FOXP2;;chr16:73093174..73093209,-!p3@ZFHX3!1.08!14.94!ZFHX3;;chr12:26277817..26277863,-!p2@BHLHE41!1.08!14.94!BHLHE41;;chr14:75746722..75746777,+!p2@FOS!1.08!14.15!FOS;;chr8:10588010..10588030,-!p1@SOX7!1.08!11.16!SOX7;;chr6:34524093..34524135,-!p1@SPDEF!1.08!10.96!SPDEF;;chr1:10754477..10754517,-!p1@CASZ1!1.07!17.93!CASZ1;;chr21:40032884..40032915,-!p2@ERG!1.07!10.76!ERG;;chr1:61547894..61547968,+!p2@NFIA!1.06!30.88!NFIA;;chr17:38256799..38256815,-!p3@NR1D1!1.06!19.33!NR1D1;;chr2:145277882..145277967,-!p3@ZEB2!1.06!18.33!ZEB2;;chr3:126076264..1260763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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000947;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0004872,UBERON:0006965,UBERON:0010316
 |fonse_cell_line=
@@ Line 40: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/aorta%252c%2520adult%252c%2520pool1.CNhs11760.10052-101G7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/aorta%252c%2520adult%252c%2520pool1.CNhs11760.10052-101G7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/aorta%252c%2520adult%252c%2520pool1.CNhs11760.10052-101G7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/aorta%252c%2520adult%252c%2520pool1.CNhs11760.10052-101G7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/aorta%252c%2520adult%252c%2520pool1.CNhs11760.10052-101G7.hg38.nobarcode.ctss.bed.gz
 |id=FF:10052-101G7
 |is_a=EFO:0002091;;FF:0010052
 |is_obsolete=
 |library_id=CNhs11760
+|library_id_phase_based=2:CNhs11760
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10052
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10052
 |name=aorta, adult, pool1
 |namespace=FANTOM5
@@ Line 49: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11760,LSID820,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10052-101G7;search_select_hide=table117:FF:10052-101G7
 }}

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Latest revision as of 12:17, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0