FF:10056-101H2: Difference between revisions

Latest revision as of 12:18, 3 June 2020

Name:	spinal cord, fetal, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11764
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	spinal cord
dev stage	29 weeks fetus
sex	female
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	A703261
catalog number	Cat:RtHFN: Spinal cord
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005114

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11764		CAGE		DRX008729		DRR009601

Accession ID Hg19

Library id		BAM		CTSS
CNhs11764		DRZ001026		DRZ002411

Accession ID Hg38

Library id		BAM		CTSS
CNhs11764		DRZ012376		DRZ013761

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.266
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.088
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.127
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.43
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.266
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.244
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.153
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.153
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.356
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.493
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0791
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.291
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.153
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.37
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.407
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.153
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.05
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.0596
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.153
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.0989
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.43
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.153
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.153
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.266
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.682
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.138
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.43
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.153
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.262
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.406
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.642
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0.153
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.266
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	1.263
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.549
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.153
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.266
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.153
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.356
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.00707
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.734
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.153
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11764

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	6.14425e-4
MA0003.1	MA0003.1	0.297
MA0004.1	MA0004.1	0.196
MA0006.1	MA0006.1	0.738
MA0007.1	MA0007.1	0.445
MA0009.1	MA0009.1	0.0877
MA0014.1	MA0014.1	0.306
MA0017.1	MA0017.1	0.0118
MA0018.2	MA0018.2	0.259
MA0019.1	MA0019.1	0.762
MA0024.1	MA0024.1	0.421
MA0025.1	MA0025.1	0.481
MA0027.1	MA0027.1	0.569
MA0028.1	MA0028.1	0.0149
MA0029.1	MA0029.1	0.248
MA0030.1	MA0030.1	0.853
MA0031.1	MA0031.1	0.182
MA0035.2	MA0035.2	0.0654
MA0038.1	MA0038.1	0.144
MA0039.2	MA0039.2	0.148
MA0040.1	MA0040.1	0.647
MA0041.1	MA0041.1	0.611
MA0042.1	MA0042.1	0.993
MA0043.1	MA0043.1	0.438
MA0046.1	MA0046.1	0.0366
MA0047.2	MA0047.2	0.00799
MA0048.1	MA0048.1	0.205
MA0050.1	MA0050.1	0.00216
MA0051.1	MA0051.1	0.0497
MA0052.1	MA0052.1	0.374
MA0055.1	MA0055.1	0.00322
MA0057.1	MA0057.1	0.693
MA0058.1	MA0058.1	0.187
MA0059.1	MA0059.1	0.0462
MA0060.1	MA0060.1	0.15
MA0061.1	MA0061.1	0.00513
MA0062.2	MA0062.2	6.7581e-5
MA0065.2	MA0065.2	0.00146
MA0066.1	MA0066.1	0.0271
MA0067.1	MA0067.1	0.652
MA0068.1	MA0068.1	0.0219
MA0069.1	MA0069.1	0.741
MA0070.1	MA0070.1	0.404
MA0071.1	MA0071.1	0.122
MA0072.1	MA0072.1	0.277
MA0073.1	MA0073.1	0.51
MA0074.1	MA0074.1	0.278
MA0076.1	MA0076.1	0.0146
MA0077.1	MA0077.1	0.0613
MA0078.1	MA0078.1	0.838
MA0079.2	MA0079.2	0.671
MA0080.2	MA0080.2	2.23987e-9
MA0081.1	MA0081.1	0.0251
MA0083.1	MA0083.1	0.778
MA0084.1	MA0084.1	0.171
MA0087.1	MA0087.1	0.187
MA0088.1	MA0088.1	0.0601
MA0090.1	MA0090.1	0.782
MA0091.1	MA0091.1	0.645
MA0092.1	MA0092.1	0.392
MA0093.1	MA0093.1	0.226
MA0099.2	MA0099.2	4.70196e-20
MA0100.1	MA0100.1	0.423
MA0101.1	MA0101.1	0.00115
MA0102.2	MA0102.2	0.0382
MA0103.1	MA0103.1	0.0823
MA0104.2	MA0104.2	0.166
MA0105.1	MA0105.1	6.03532e-5
MA0106.1	MA0106.1	0.026
MA0107.1	MA0107.1	0.00295
MA0108.2	MA0108.2	3.55082e-5
MA0111.1	MA0111.1	0.666
MA0112.2	MA0112.2	9.35709e-4
MA0113.1	MA0113.1	0.462
MA0114.1	MA0114.1	0.0103
MA0115.1	MA0115.1	0.215
MA0116.1	MA0116.1	0.00168
MA0117.1	MA0117.1	0.655
MA0119.1	MA0119.1	0.0557
MA0122.1	MA0122.1	0.718
MA0124.1	MA0124.1	0.46
MA0125.1	MA0125.1	0.197
MA0131.1	MA0131.1	0.856
MA0135.1	MA0135.1	0.164
MA0136.1	MA0136.1	5.01209e-16
MA0137.2	MA0137.2	0.581
MA0138.2	MA0138.2	0.182
MA0139.1	MA0139.1	0.209
MA0140.1	MA0140.1	0.0252
MA0141.1	MA0141.1	0.0112
MA0142.1	MA0142.1	0.619
MA0143.1	MA0143.1	0.247
MA0144.1	MA0144.1	0.302
MA0145.1	MA0145.1	0.353
MA0146.1	MA0146.1	0.0132
MA0147.1	MA0147.1	0.0882
MA0148.1	MA0148.1	0.0394
MA0149.1	MA0149.1	0.00609
MA0150.1	MA0150.1	5.11222e-7
MA0152.1	MA0152.1	0.234
MA0153.1	MA0153.1	0.915
MA0154.1	MA0154.1	0.0139
MA0155.1	MA0155.1	0.823
MA0156.1	MA0156.1	6.88429e-10
MA0157.1	MA0157.1	0.118
MA0159.1	MA0159.1	0.00749
MA0160.1	MA0160.1	0.0177
MA0162.1	MA0162.1	0.226
MA0163.1	MA0163.1	1.39833e-7
MA0164.1	MA0164.1	0.573
MA0258.1	MA0258.1	0.0203
MA0259.1	MA0259.1	0.446

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11764

Novel motif	Logo	P-value
1	1	0.0296
10	10	0.0353
100	100	0.375
101	101	0.903
102	102	0.899
103	103	0.0636
104	104	0.239
105	105	0.162
106	106	0.157
107	107	0.541
108	108	0.765
109	109	0.00259
11	11	0.0154
110	110	0.0434
111	111	0.131
112	112	0.394
113	113	0.266
114	114	0.0313
115	115	0.331
116	116	0.47
117	117	0.00393
118	118	0.0897
119	119	0.149
12	12	0.539
120	120	0.161
121	121	0.735
122	122	0.736
123	123	0.56
124	124	0.393
125	125	0.462
126	126	0.106
127	127	0.176
128	128	0.45
129	129	0.467
13	13	0.00685
130	130	0.418
131	131	0.24
132	132	0.349
133	133	0.0817
134	134	0.645
135	135	0.263
136	136	0.0402
137	137	0.316
138	138	0.567
139	139	0.0812
14	14	0.668
140	140	0.186
141	141	0.218
142	142	0.784
143	143	0.00108
144	144	0.947
145	145	0.396
146	146	0.585
147	147	0.767
148	148	0.193
149	149	0.163
15	15	0.0341
150	150	0.239
151	151	0.662
152	152	0.174
153	153	0.451
154	154	0.664
155	155	0.216
156	156	0.427
157	157	0.479
158	158	0.752
159	159	0.155
16	16	0.134
160	160	0.257
161	161	0.149
162	162	0.551
163	163	0.524
164	164	0.0359
165	165	0.352
166	166	0.255
167	167	0.239
168	168	0.625
169	169	0.0109
17	17	0.128
18	18	0.0657
19	19	0.415
2	2	0.932
20	20	0.15
21	21	0.16
22	22	0.283
23	23	0.484
24	24	0.0494
25	25	0.47
26	26	5.32485e-4
27	27	0.664
28	28	0.507
29	29	0.00809
3	3	0.031
30	30	0.437
31	31	0.917
32	32	0.801
33	33	0.0939
34	34	0.997
35	35	0.391
36	36	0.103
37	37	0.0292
38	38	0.254
39	39	0.805
4	4	0.936
40	40	0.0557
41	41	0.155
42	42	0.123
43	43	0.131
44	44	0.252
45	45	0.852
46	46	0.0516
47	47	0.0426
48	48	0.0697
49	49	0.13
5	5	0.319
50	50	0.576
51	51	0.39
52	52	0.931
53	53	0.899
54	54	0.466
55	55	0.242
56	56	0.52
57	57	0.313
58	58	0.22
59	59	0.207
6	6	0.977
60	60	0.195
61	61	0.0828
62	62	0.13
63	63	0.194
64	64	0.202
65	65	0.302
66	66	0.11
67	67	0.302
68	68	0.348
69	69	0.763
7	7	0.105
70	70	0.0109
71	71	0.00779
72	72	0.222
73	73	0.0394
74	74	0.793
75	75	0.0133
76	76	0.149
77	77	0.239
78	78	0.00829
79	79	0.998
8	8	0.103
80	80	0.686
81	81	0.583
82	82	0.545
83	83	0.358
84	84	0.677
85	85	0.391
86	86	0.136
87	87	0.00488
88	88	0.731
89	89	0.427
9	9	0.649
90	90	0.0698
91	91	0.794
92	92	0.398
93	93	0.297
94	94	0.058
95	95	0.0114
96	96	0.318
97	97	0.891
98	98	0.11
99	99	0.787

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11764

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010056 human spinal cord - fetal sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002240 (spinal cord)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0000489 (cavitated compound organ)
0005174 (dorsal region element)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001137 (dorsum)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010056 (human spinal cord - fetal sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006241 (future spinal cord)
UBERON:0003057 (chordal neural plate)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002240,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0002346,UBERON:0000073,UBERON:0004121,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0003103,UBERON:0005291,UBERON:0005174,UBERON:0000489,UBERON:0005177,UBERON:0006598,UBERON:0002532,UBERON:0001017,UBERON:0001016,UBERON:0000924,UBERON:0005743,UBERON:0001137,UBERON:0003075,UBERON:0001049,UBERON:0006601,UBERON:0005068,UBERON:0006241,UBERON:0003076,UBERON:0007284,UBERON:0003057,UBERON:0007135
+|DRA_sample_Accession=CAGE@SAMD00005114
+|accession_numbers=CAGE;DRX008729;DRR009601;DRZ001026;DRZ002411;DRZ012376;DRZ013761
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002240,UBERON:0000479,UBERON:0004121,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0000489,UBERON:0005174,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001137
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010056
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.83!679.21!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.48!303.89!OLIG1;;chr22:38380543..38380569,-!p1@SOX10!2.32!208.37!SOX10;;chr21:34398234..34398250,+!p1@OLIG2!2.13!133.98!OLIG2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.08!118.34!PEG3;;chr3:181429704..181429722,+!p1@SOX2!2.00!98.06!SOX2;;chr10:48355030..48355090,+!p1@ZNF488!1.95!112.00!ZNF488;;chr12:106976774..106976788,+!p1@RFX4!1.93!84.95!RFX4;;chr3:147127177..147127194,+!p2@ZIC1!1.89!76.50!ZIC1;;chr11:61520075..61520136,+!p1@C11orf9!1.87!150.47!C11orf9;;chr3:181429741..181429767,+!p2@SOX2!1.83!66.36!SOX2;;chr3:147127142..147127168,+!p1@ZIC1!1.82!65.09!ZIC1;;chr4:57547454..57547469,-!p1@HOPX!1.78!59.17!HOPX;;chr16:1031762..1031781,+!p1@SOX8!1.75!54.95!SOX8;;chr2:145277882..145277967,-!p3@ZEB2!1.71!84.11!ZEB2;;chr10:134599649..134599653,-!p1@NKX6-2!1.67!46.07!NKX6-2;;chr2:5832508..5832524,+!p1@SOX11!1.66!44.80!SOX11;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.66!44.38!POU3F3;;chr21:34442540..34442560,+!p2@OLIG1!1.61!40.15!OLIG1;;chr1:2461692..2461710,-!p1@HES5!1.57!35.93!HES5;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.57!35.93!HOXC5;;chr14:33403881..33403924,+!p1@NPAS3!1.57!35.93!NPAS3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.55!34.66!ZBED1;;chr17:46692457..46692484,-!p2@HOXB8!1.55!34.24!HOXB8;;chr6:19837592..19837621,+!p1@ID4!1.54!199.07!ID4;;chr20:50179368..50179392,-!p2@NFATC2!1.54!43.11!NFATC2;;chr12:103351444..103351461,+!p1@ASCL1!1.54!33.39!ASCL1;;chr17:46682321..46682362,-!p1@HOXB6!1.51!31.28!HOXB6;;chr2:19558373..19558392,-!p1@OSR1!1.49!79.88!OSR1;;chr1:40105299..40105326,-!p1@HEYL!1.49!29.59!HEYL;;chr9:77112244..77112262,+!p1@RORB!1.47!31.70!RORB;;chr11:8102846..8102892,+!p1@TUB!1.45!37.19!TUB;;chr6:126070769..126070801,+!p1@HEY2!1.45!30.85!HEY2;;chr19:46801639..46801699,+!p1@HIF3A!1.45!27.05!HIF3A;;chr2:223163706..223163730,-!p1@PAX3!1.45!27.05!PAX3;;chr17:53342311..53342400,+!p1@HLF!1.43!29.59!HLF;;chr8:80679993..80680011,-!p1@HEY1!1.42!35.93!HEY1;;chr15:80696703..80696754,+!p1@ARNT2!1.42!33.81!ARNT2;;chr4:81118647..81118666,+!p1@PRDM8!1.42!33.39!PRDM8;;chr20:62680984..62680999,-!p1@SOX18!1.41!32.12!SOX18;;chr7:27192185..27192209,-!p1@HOXA3!1.41!24.94!HOXA3;;chr13:100634031..100634045,+!p1@ZIC2!1.41!24.51!ZIC2;;chr5:158526917..158526932,-!p1@EBF1!1.40!58.33!EBF1;;chr12:106976678..106976708,+!p2@RFX4!1.39!23.67!RFX4;;chr4:57547820..57547829,-!p8@HOPX!1.39!23.67!HOPX;;chr2:239148671..239148686,-!p1@HES6!1.37!79.46!HES6;;chr17:46692624..46692659,-!p3@HOXB8!1.37!22.40!HOXB8;;chr7:27196217..27196246,-!p2@HOXA7!1.37!22.40!HOXA7;;chr7:27205136..27205164,-!p1@HOXA9!1.36!21.98!HOXA9;;chr5:92919100..92919135,+!p3@NR2F1!1.35!25.78!NR2F1;;chr19:46800289..46800327,+!p2@HIF3A!1.35!21.56!HIF3A;;chr16:86600426..86600441,+!p1@FOXC2!1.31!47.76!FOXC2;;chr12:26277817..26277863,-!p2@BHLHE41!1.31!26.20!BHLHE41;;chr16:79634624..79634642,-!p1@MAF!1.29!71.85!MAF;;chr12:52445218..52445237,+!p1@NR4A1!1.28!223.16!NR4A1;;chr8:53322304..53322340,-!p1@ST18!1.28!18.17!ST18;;chr17:46690839..46690884,-!p1@HOXB8!1.27!17.75!HOXB8;;chr2:145275982..145276003,-!p7@ZEB2!1.25!16.91!ZEB2;;chr8:55370487..55370503,+!p1@SOX17!1.25!16.91!SOX17;;chr15:57511609..57511651,+!p2@TCF12!1.24!27.47!TCF12;;chr1:214161272..214161322,+!p1@PROX1!1.23!22.40!PROX1;;chr5:92918919..92918942,+!p1@NR2F1!1.22!69.32!NR2F1;;chr13:72441315..72441454,-!p1@DACH1!1.22!30.85!DACH1;;chr5:2751762..2751784,-!p1@IRX2!1.22!15.64!IRX2;;chr8:25902876..25902936,-!p1@EBF2!1.20!14.79!EBF2;;chr17:46688334..46688385,-!p1@HOXB7!1.19!21.13!HOXB7;;chr10:131762504..131762555,-!p1@EBF3!1.19!14.37!EBF3;;chr10:48359344..48359376,+!p2@ZNF488!1.19!14.37!ZNF488;;chr21:39870339..39870443,-!p1@ERG!1.19!14.37!ERG;;chr14:61116183..61116208,-!p1@SIX1!1.18!53.68!SIX1;;chr1:61548069..61548102,+!p3@NFIA!1.18!34.24!NFIA;;chr16:51185172..51185197,-!p1@SALL1!1.17!13.95!SALL1;;chr17:46692287..46692317,-!p7@HOXB8!1.17!13.95!HOXB8;;chr18:76739816..76739822,+!p1@SALL3!1.17!13.95!SALL3;;chr8:30890810..30890880,-!p1@PURG!1.17!13.95!PURG;;chr10:64576105..64576133,-!p1@EGR2!1.16!27.90!EGR2;;chr11:31839488..31839515,-!p3@PAX6!1.16!13.52!PAX6;;chr14:22005197..22005261,-!p3@SALL2!1.16!13.52!SALL2;;chr17:46675619..46675642,-!p5@HOXB6!1.16!13.52!HOXB6;;chr16:79634595..79634620,-!p2@MAF!1.15!24.09!MAF;;chr8:80680024..80680046,-!p2@HEY1!1.15!14.79!HEY1;;chr5:158527104..158527135,-!p4@EBF1!1.15!13.10!EBF1;;chr17:74137321..74137337,-!p1@FOXJ1!1.15!13.10!FOXJ1;;chr2:176994408..176994492,+!p1@HOXD8!1.15!13.10!HOXD8;;chr19:13134772..13134822,+!p2@NFIX!1.14!19.02!NFIX;;chr17:46692603..46692621,-!p6@HOXB8!1.14!12.68!HOXB8;;chr19:58545454..58545498,+!p1@ZSCAN1!1.14!12.68!ZSCAN1;;chr20:21494684..21494708,-!p1@NKX2-2!1.14!12.68!NKX2-2;;chr4:57547751..57547764,-!p6@HOPX!1.14!12.68!HOPX;;chr12:54779511..54779577,-!p5@ZNF385A!1.14!12.68!ZNF385A;;chr17:7492684..7492778,-!p2@SOX15!1.12!25.78!SOX15;;chr6:85474299..85474324,-!p1@TBX18!1.12!21.98!TBX18;;chr12:54393880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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002240
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006241,UBERON:0003057,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spinal%2520cord%252c%2520fetal%252c%2520donor1.CNhs11764.10056-101H2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spinal%2520cord%252c%2520fetal%252c%2520donor1.CNhs11764.10056-101H2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spinal%2520cord%252c%2520fetal%252c%2520donor1.CNhs11764.10056-101H2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/spinal%2520cord%252c%2520fetal%252c%2520donor1.CNhs11764.10056-101H2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/spinal%2520cord%252c%2520fetal%252c%2520donor1.CNhs11764.10056-101H2.hg38.nobarcode.ctss.bed.gz
 |id=FF:10056-101H2
 |is_a=EFO:0002091;;FF:0010056
 |is_obsolete=
+|library_id=CNhs11764
+|library_id_phase_based=2:CNhs11764
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10056
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10056
 |name=spinal cord, fetal, donor1
 |namespace=FANTOM5
@@ Line 44: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11764,LSID820,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=101
 |rna_catalog_number=Cat:RtHFN: Spinal cord
@@ Line 59: / Line 79: @@
 |rna_weight_ug=10
 |sample_age=
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 80: / Line 101: @@
 |top_motifs=DBP:3.27666669141;HOX{A6,A7,B6,B7}:3.22968181235;SOX5:3.21700716068;MED-1{core}:3.08004502252;MYFfamily:2.99559536473;SOX{8,9,10}:2.9389146543;ZNF384:2.90718811361;ZFP161:2.86970101784;GCM1,2:2.8541300097;HIC1:2.83552128453;MTE{core}:2.81006705045;SOX2:2.79441076449;REST:2.78933841281;MAZ:2.7855792436;NHLH1,2:2.78255763796;TFAP2B:2.77825821858;EGR1..3:2.70768012595;RBPJ:2.7014654955;SMAD1..7,9:2.62846300441;MZF1:2.59083022703;MYBL2:2.58759069;BREu{core}:2.48803468913;MTF1:2.4869358331;GTF2I:2.45017094112;SPZ1:2.42807567858;EP300:2.41824965675;GATA4:2.3898228692;KLF4:2.34158988803;PATZ1:2.31466650156;PAX5:2.30772834289;GFI1B:2.29926266417;POU5F1:2.26577272352;ZBTB6:2.25223624192;FOXP1:2.17158100055;RREB1:2.16685080508;FOXM1:2.1462819294;SOX17:2.1449783122;PRDM1:2.1277577898;RFX1:2.11683668164;CUX2:2.0794811963;ZIC1..3:2.07795846851;ZNF423:2.03121661395;NFIX:1.95381552367;PRRX1,2:1.88495267553;NKX2-3_NKX2-5:1.83925582572;EBF1:1.82720655485;LMO2:1.82369786999;NKX3-2:1.79487015609;TGIF1:1.79418956157;TOPORS:1.72808955215;TFAP2{A,C}:1.66486181466;XBP1:1.63105416387;ATF2:1.6247726618;TFDP1:1.54538307191;LEF1_TCF7_TCF7L1,2:1.48082770803;SP1:1.47878110179;TLX1..3_NFIC{dimer}:1.41368781977;ONECUT1,2:1.41183136739;IKZF2:1.40332007012;OCT4_SOX2{dimer}:1.40141695462;ESR1:1.39530665145;HOX{A4,D4}:1.37888049761;FOXD3:1.37572018799;TAL1_TCF{3,4,12}:1.37517771426;TBP:1.36174259826;POU3F1..4:1.30588843229;GLI1..3:1.28752391394;JUN:1.23439897841;GTF2A1,2:1.23177148146;HBP1_HMGB_SSRP1_UBTF:1.21006460023;FOXL1:1.19301090274;VSX1,2:1.15600797886;POU6F1:1.14428147725;NKX6-1,2:1.1306534054;PAX6:1.10089356641;BPTF:1.07738595271;ADNP_IRX_SIX_ZHX:1.05110900337;FOXP3:1.03723990837;GFI1:1.03175928322;HMGA1,2:1.02193100737;NR6A1:1.01190589484;POU1F1:1.00730715702;ALX1:0.980750289385;RFX2..5_RFXANK_RFXAP:0.958429757986;NANOG:0.918476776634;MAFB:0.901977763524;IKZF1:0.897618908615;XCPE1{core}:0.871354972585;FOXQ1:0.862569764455;AHR_ARNT_ARNT2:0.831699121505;HOXA9_MEIS1:0.822713939418;CDC5L:0.809777021286;LHX3,4:0.761830870879;NKX2-1,4:0.743510056248;FOX{I1,J2}:0.696484968179;NR5A1,2:0.681116351795;NR3C1:0.680796138914;MEF2{A,B,C,D}:0.643154665241;RORA:0.613882145984;ZNF238:0.604292913526;UFEwm:0.565062446822;NRF1:0.521150125461;GZF1:0.501895495381;NFY{A,B,C}:0.47173208943;T:0.467325282016;AIRE:0.461201137574;FOX{F1,F2,J1}:0.395201728825;ZNF143:0.379444283067;TFCP2:0.357010650747;NFATC1..3:0.356861737743;GATA6:0.310686900065;TEAD1:0.300130547712;TEF:0.216838808892;PBX1:0.202882630887;HMX1:0.181677042143;STAT2,4,6:0.178524423968;YY1:0.172724700952;NR1H4:0.154820674959;TFAP4:0.144918323238;ARID5B:0.131299213327;RXR{A,B,G}:0.101047882969;NKX3-1:0.0886125158971;PAX4:0.0870594148309;CREB1:0.0504140384261;DMAP1_NCOR{1,2}_SMARC:0.0439475489288;ALX4:0.0403291349071;SRF:0.0339489348668;TBX4,5:-0.045108296622;IRF7:-0.0518436103466;FOXA2:-0.0708415538115;PAX2:-0.0709347277481;MYOD1:-0.0769210630887;NANOG{mouse}:-0.0780891272131;ZEB1:-0.092043756126;STAT1,3:-0.0960920312849;FOXO1,3,4:-0.12345742785;HNF4A_NR2F1,2:-0.126339505925;CDX1,2,4:-0.128837360915;AR:-0.129081826262;PDX1:-0.155336051286;PITX1..3:-0.160371983766;SREBF1,2:-0.171814497845;PAX3,7:-0.173699626517;FOXN1:-0.184670197639;TLX2:-0.191839879665;PAX1,9:-0.203969383567;EVI1:-0.223155170691;NFIL3:-0.236363339644;IRF1,2:-0.26521221592;ATF4:-0.283479152508;HNF1A:-0.288922043305;ATF6:-0.299304985895;ZNF148:-0.314017204726;FOX{D1,D2}:-0.342299592057;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.403314563813;CRX:-0.428381109971;HAND1,2:-0.45629433418;ATF5_CREB3:-0.462369838223;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.477768907382;HSF1,2:-0.488587554824;RXRA_VDR{dimer}:-0.51772401976;ZBTB16:-0.545749509653;NFE2L2:-0.58464639309;SNAI1..3:-0.594514366347;E2F1..5:-0.630950517734;SPIB:-0.710048245681;ESRRA:-0.745294181636;SPI1:-0.758748426459;TP53:-0.822303978078;ETS1,2:-0.845100662268;NFKB1_REL_RELA:-0.859079568641;bHLH_family:-0.897876945803;RUNX1..3:-0.952343946763;PAX8:-0.954438431545;PPARG:-0.978570946813;HIF1A:-1.01548145879;CEBPA,B_DDIT3:-1.13190443375;NFE2L1:-1.13406588058;FOSL2:-1.1432561121;FOS_FOS{B,L1}_JUN{B,D}:-1.17807081128;BACH2:-1.19754208897;HLF:-1.27927804649;NFE2:-1.29347026188;HOX{A5,B5}:-1.32064583411;EN1,2:-1.43846177629;ELK1,4_GABP{A,B1}:-1.46541764985;POU2F1..3:-1.59920897497;NKX2-2,8:-1.60265523196;MYB:-1.60824194335;ELF1,2,4:-1.62439964759;HES1:-1.79624053888;STAT5{A,B}:-3.08068458381
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10056-101H2;search_select_hide=table117:FF:10056-101H2
 }}

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FF:10056-101H2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:18, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0