FF:10056-101H2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005114 | ||
|accession_numbers=CAGE;DRX008729;DRR009601;DRZ001026;DRZ002411;DRZ012376;DRZ013761 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002240,UBERON:0000479,UBERON:0004121,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0000489,UBERON:0005174,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001137 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010056 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spinal%2520cord%252c%2520fetal%252c%2520donor1.CNhs11764.10056-101H2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spinal%2520cord%252c%2520fetal%252c%2520donor1.CNhs11764.10056-101H2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spinal%2520cord%252c%2520fetal%252c%2520donor1.CNhs11764.10056-101H2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/spinal%2520cord%252c%2520fetal%252c%2520donor1.CNhs11764.10056-101H2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/spinal%2520cord%252c%2520fetal%252c%2520donor1.CNhs11764.10056-101H2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10056-101H2 | |id=FF:10056-101H2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010056 | ||
|is_obsolete= | |||
|library_id=CNhs11764 | |||
|library_id_phase_based=2:CNhs11764 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10056 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10056 | |||
|name=spinal cord, fetal, donor1 | |name=spinal cord, fetal, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11764,LSID820,release009,COMPLETED | |profile_hcage=CNhs11764,LSID820,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:RtHFN: Spinal cord | |rna_catalog_number=Cat:RtHFN: Spinal cord | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=A? | |sample_ethnicity=A? | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.13770664043504e-276!GO:0005737;cytoplasm;2.20038684564378e-167!GO:0044444;cytoplasmic part;4.48689641820313e-111!GO:0043226;organelle;8.48771992215067e-99!GO:0043229;intracellular organelle;1.70855638158783e-98!GO:0043227;membrane-bound organelle;4.90337269735243e-84!GO:0043231;intracellular membrane-bound organelle;4.90337269735243e-84!GO:0005515;protein binding;9.04320716255106e-83!GO:0044422;organelle part;5.42755497828661e-76!GO:0044446;intracellular organelle part;6.54366734280435e-75!GO:0032991;macromolecular complex;6.02194286951353e-61!GO:0016043;cellular component organization and biogenesis;6.93801311030802e-54!GO:0030529;ribonucleoprotein complex;1.44008218624843e-39!GO:0031090;organelle membrane;1.33456172538199e-37!GO:0005739;mitochondrion;2.06709359550804e-37!GO:0043234;protein complex;8.34494881193564e-35!GO:0033036;macromolecule localization;6.43006334873421e-32!GO:0003723;RNA binding;2.84283825362595e-31!GO:0015031;protein transport;3.51716394030404e-31!GO:0008104;protein localization;2.59447485027375e-29!GO:0046907;intracellular transport;2.59681369793057e-29!GO:0044429;mitochondrial part;6.32986524298887e-29!GO:0045184;establishment of protein localization;1.56591370989772e-28!GO:0043233;organelle lumen;1.00205329128193e-27!GO:0031974;membrane-enclosed lumen;1.00205329128193e-27!GO:0031975;envelope;1.01352502135827e-26!GO:0031967;organelle envelope;1.27006808826404e-26!GO:0044238;primary metabolic process;8.47092794460084e-26!GO:0019538;protein metabolic process;1.15221422199541e-25!GO:0044428;nuclear part;7.60544193338079e-25!GO:0005829;cytosol;9.3295264189079e-25!GO:0005840;ribosome;1.95252506645597e-24!GO:0051641;cellular localization;5.02197884725612e-24!GO:0044237;cellular metabolic process;7.03552489223406e-24!GO:0051649;establishment of cellular localization;9.63744200728482e-24!GO:0006996;organelle organization and biogenesis;8.62005819864197e-23!GO:0044260;cellular macromolecule metabolic process;6.3134772599267e-22!GO:0043170;macromolecule metabolic process;9.0193889105935e-22!GO:0003735;structural constituent of ribosome;2.24555329506857e-21!GO:0044267;cellular protein metabolic process;3.6661856711193e-21!GO:0016071;mRNA metabolic process;1.20433169200343e-20!GO:0065003;macromolecular complex assembly;1.31419491189973e-20!GO:0022607;cellular component assembly;1.35447715377191e-20!GO:0006119;oxidative phosphorylation;1.45260773516193e-20!GO:0005740;mitochondrial envelope;1.48501889336368e-20!GO:0006886;intracellular protein transport;2.37410982383446e-20!GO:0031966;mitochondrial membrane;3.18891677743944e-20!GO:0016192;vesicle-mediated transport;7.33174513550673e-20!GO:0008380;RNA splicing;7.49051849504871e-20!GO:0019866;organelle inner membrane;9.14423983293433e-20!GO:0005794;Golgi apparatus;1.17006505742034e-19!GO:0009058;biosynthetic process;1.29246364525742e-19!GO:0005743;mitochondrial inner membrane;2.02942120843591e-18!GO:0033279;ribosomal subunit;3.25243047366324e-18!GO:0043228;non-membrane-bound organelle;3.25243047366324e-18!GO:0043232;intracellular non-membrane-bound organelle;3.25243047366324e-18!GO:0006412;translation;5.59925122013905e-18!GO:0031988;membrane-bound vesicle;5.22482094159634e-17!GO:0031982;vesicle;1.00871644498015e-16!GO:0006396;RNA processing;1.12463638427988e-16!GO:0044455;mitochondrial membrane part;1.12463638427988e-16!GO:0016023;cytoplasmic membrane-bound vesicle;1.35411631501787e-16!GO:0005634;nucleus;1.41425768589417e-16!GO:0006397;mRNA processing;2.16521482175791e-16!GO:0031410;cytoplasmic vesicle;2.39776017201327e-16!GO:0012505;endomembrane system;5.28302846952911e-16!GO:0009059;macromolecule biosynthetic process;1.13546449028604e-15!GO:0005746;mitochondrial respiratory chain;1.41643124381097e-15!GO:0005783;endoplasmic reticulum;5.00407538473744e-15!GO:0044249;cellular biosynthetic process;5.07310373182958e-15!GO:0048770;pigment granule;8.06003715233271e-15!GO:0042470;melanosome;8.06003715233271e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.12080423020912e-14!GO:0003954;NADH dehydrogenase activity;1.12080423020912e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.12080423020912e-14!GO:0008092;cytoskeletal protein binding;1.15355164157292e-14!GO:0044445;cytosolic part;2.52692646416954e-14!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.40744644269385e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.92897797132048e-13!GO:0005681;spliceosome;5.47474742713888e-13!GO:0031981;nuclear lumen;7.55973407032223e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.19677553190156e-12!GO:0045271;respiratory chain complex I;1.19677553190156e-12!GO:0005747;mitochondrial respiratory chain complex I;1.19677553190156e-12!GO:0007010;cytoskeleton organization and biogenesis;1.31204447830234e-12!GO:0042775;organelle ATP synthesis coupled electron transport;2.07894727807949e-12!GO:0042773;ATP synthesis coupled electron transport;2.07894727807949e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.7771965256723e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.84354356607005e-11!GO:0006457;protein folding;2.84485822600354e-11!GO:0016462;pyrophosphatase activity;3.1101654138081e-11!GO:0016817;hydrolase activity, acting on acid anhydrides;4.15222698620929e-11!GO:0031980;mitochondrial lumen;7.36787579970037e-11!GO:0005759;mitochondrial matrix;7.36787579970037e-11!GO:0000166;nucleotide binding;9.52334780679638e-11!GO:0048193;Golgi vesicle transport;1.11696045971447e-10!GO:0017111;nucleoside-triphosphatase activity;1.14652890952281e-10!GO:0030036;actin cytoskeleton organization and biogenesis;2.0405844798778e-10!GO:0030029;actin filament-based process;3.29362221145852e-10!GO:0051082;unfolded protein binding;7.8267149272193e-10!GO:0008134;transcription factor binding;1.14266165946345e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.47952079509359e-09!GO:0015935;small ribosomal subunit;1.52867812577781e-09!GO:0015934;large ribosomal subunit;1.65452458300306e-09!GO:0006605;protein targeting;2.11108592747765e-09!GO:0044432;endoplasmic reticulum part;2.1858301861104e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.81466714214934e-09!GO:0019829;cation-transporting ATPase activity;3.98750011303522e-09!GO:0048523;negative regulation of cellular process;4.66407707619525e-09!GO:0007399;nervous system development;6.87599863708386e-09!GO:0051603;proteolysis involved in cellular protein catabolic process;8.50103771500841e-09!GO:0005654;nucleoplasm;9.58933590778212e-09!GO:0000502;proteasome complex (sensu Eukaryota);9.70041219108934e-09!GO:0044257;cellular protein catabolic process;9.70041219108934e-09!GO:0006511;ubiquitin-dependent protein catabolic process;1.06464855009684e-08!GO:0016874;ligase activity;1.25773537407398e-08!GO:0044431;Golgi apparatus part;1.26474287414474e-08!GO:0003924;GTPase activity;1.28287341902462e-08!GO:0043283;biopolymer metabolic process;1.29470171741154e-08!GO:0008565;protein transporter activity;1.30306396329397e-08!GO:0019941;modification-dependent protein catabolic process;1.37154223942404e-08!GO:0043632;modification-dependent macromolecule catabolic process;1.37154223942404e-08!GO:0016044;membrane organization and biogenesis;2.17484424260738e-08!GO:0022618;protein-RNA complex assembly;2.21127582534193e-08!GO:0006461;protein complex assembly;2.7641247796022e-08!GO:0000902;cell morphogenesis;3.1072280079431e-08!GO:0032989;cellular structure morphogenesis;3.1072280079431e-08!GO:0044265;cellular macromolecule catabolic process;3.13631806160737e-08!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.2750648988199e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.86464343672833e-08!GO:0030163;protein catabolic process;5.37871158026227e-08!GO:0008135;translation factor activity, nucleic acid binding;5.68645434021161e-08!GO:0006512;ubiquitin cycle;6.04986975089048e-08!GO:0051186;cofactor metabolic process;9.24908110268948e-08!GO:0043412;biopolymer modification;1.03428588673541e-07!GO:0048519;negative regulation of biological process;1.17913371995574e-07!GO:0032553;ribonucleotide binding;1.31631951375345e-07!GO:0032555;purine ribonucleotide binding;1.31631951375345e-07!GO:0003779;actin binding;1.36099074500552e-07!GO:0006464;protein modification process;1.66279654376924e-07!GO:0044451;nucleoplasm part;1.84661332143816e-07!GO:0015986;ATP synthesis coupled proton transport;2.11670423764011e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.11670423764011e-07!GO:0007264;small GTPase mediated signal transduction;2.24086838526759e-07!GO:0031252;leading edge;2.7326236204963e-07!GO:0051179;localization;3.01534210619943e-07!GO:0030135;coated vesicle;3.13765365926976e-07!GO:0043285;biopolymer catabolic process;3.61746856162768e-07!GO:0005761;mitochondrial ribosome;3.61896860144948e-07!GO:0000313;organellar ribosome;3.61896860144948e-07!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.78184273607708e-07!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.65106190565151e-07!GO:0015630;microtubule cytoskeleton;4.69369929544907e-07!GO:0031965;nuclear membrane;5.49436176752218e-07!GO:0005635;nuclear envelope;5.68621911106619e-07!GO:0048475;coated membrane;5.86641843175342e-07!GO:0030117;membrane coat;5.86641843175342e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.95030321937175e-07!GO:0009144;purine nucleoside triphosphate metabolic process;5.95030321937175e-07!GO:0010467;gene expression;5.98003344125205e-07!GO:0046034;ATP metabolic process;6.59776910980003e-07!GO:0006913;nucleocytoplasmic transport;6.77547894688883e-07!GO:0009199;ribonucleoside triphosphate metabolic process;7.11219914056063e-07!GO:0005525;GTP binding;7.13179857845904e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.26025913765311e-07!GO:0009141;nucleoside triphosphate metabolic process;7.92791820906051e-07!GO:0015629;actin cytoskeleton;9.37020919728613e-07!GO:0045045;secretory pathway;9.92176337463488e-07!GO:0009060;aerobic respiration;9.92176337463488e-07!GO:0009150;purine ribonucleotide metabolic process;1.02113239087008e-06!GO:0044248;cellular catabolic process;1.02766167170233e-06!GO:0048471;perinuclear region of cytoplasm;1.10574436838872e-06!GO:0051169;nuclear transport;1.12933231748761e-06!GO:0005768;endosome;1.15440861543935e-06!GO:0017076;purine nucleotide binding;1.18963039323002e-06!GO:0000398;nuclear mRNA splicing, via spliceosome;1.26747220710118e-06!GO:0000375;RNA splicing, via transesterification reactions;1.26747220710118e-06!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.26747220710118e-06!GO:0009057;macromolecule catabolic process;1.30333690851e-06!GO:0005793;ER-Golgi intermediate compartment;1.50287736910385e-06!GO:0015631;tubulin binding;1.67389646528145e-06!GO:0030120;vesicle coat;1.67687667748704e-06!GO:0030662;coated vesicle membrane;1.67687667748704e-06!GO:0006163;purine nucleotide metabolic process;1.67687667748704e-06!GO:0043687;post-translational protein modification;1.68399848518753e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.69647988432602e-06!GO:0000139;Golgi membrane;1.71648891938438e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.04514973726161e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.08715469621416e-06!GO:0006793;phosphorus metabolic process;2.21608024109603e-06!GO:0006796;phosphate metabolic process;2.21608024109603e-06!GO:0005789;endoplasmic reticulum membrane;2.31866991978149e-06!GO:0008639;small protein conjugating enzyme activity;2.41306575814761e-06!GO:0045333;cellular respiration;2.72420099973331e-06!GO:0006446;regulation of translational initiation;2.86427262727285e-06!GO:0045786;negative regulation of progression through cell cycle;3.17957059020606e-06!GO:0004842;ubiquitin-protein ligase activity;3.25383773669575e-06!GO:0005905;coated pit;3.43404559103877e-06!GO:0006810;transport;3.52275553418507e-06!GO:0009259;ribonucleotide metabolic process;3.75699986752212e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;4.966361018867e-06!GO:0003743;translation initiation factor activity;5.44809821246727e-06!GO:0006897;endocytosis;5.45376882213279e-06!GO:0010324;membrane invagination;5.45376882213279e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;5.5980731678685e-06!GO:0009055;electron carrier activity;8.21843297662862e-06!GO:0006099;tricarboxylic acid cycle;8.50192248013354e-06!GO:0046356;acetyl-CoA catabolic process;8.50192248013354e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.67718501028368e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.67718501028368e-06!GO:0032561;guanyl ribonucleotide binding;1.01247128106053e-05!GO:0019001;guanyl nucleotide binding;1.01247128106053e-05!GO:0006754;ATP biosynthetic process;1.0625937147757e-05!GO:0006753;nucleoside phosphate metabolic process;1.0625937147757e-05!GO:0017038;protein import;1.1169271455668e-05!GO:0009142;nucleoside triphosphate biosynthetic process;1.13864192774086e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.13864192774086e-05!GO:0019787;small conjugating protein ligase activity;1.19292256649911e-05!GO:0045259;proton-transporting ATP synthase complex;1.25481340793385e-05!GO:0005083;small GTPase regulator activity;1.28912221445634e-05!GO:0009152;purine ribonucleotide biosynthetic process;1.36205283909556e-05!GO:0009109;coenzyme catabolic process;1.59914724215183e-05!GO:0006333;chromatin assembly or disassembly;1.63944575506226e-05!GO:0005798;Golgi-associated vesicle;1.93314886020435e-05!GO:0006323;DNA packaging;2.00119904139679e-05!GO:0006164;purine nucleotide biosynthetic process;2.16989126659789e-05!GO:0030695;GTPase regulator activity;2.38360237217591e-05!GO:0008287;protein serine/threonine phosphatase complex;2.42908219186603e-05!GO:0006413;translational initiation;3.21315893093651e-05!GO:0008361;regulation of cell size;3.55408049994519e-05!GO:0006732;coenzyme metabolic process;3.69531136351129e-05!GO:0005874;microtubule;4.33667370934046e-05!GO:0006084;acetyl-CoA metabolic process;4.39524679220559e-05!GO:0003712;transcription cofactor activity;4.78560415018382e-05!GO:0016604;nuclear body;4.83227719702477e-05!GO:0016049;cell growth;5.03130856755046e-05!GO:0051187;cofactor catabolic process;5.38372545229997e-05!GO:0005769;early endosome;5.85367706845171e-05!GO:0051128;regulation of cellular component organization and biogenesis;6.07154843710955e-05!GO:0044453;nuclear membrane part;6.29439836307755e-05!GO:0051234;establishment of localization;6.42633561466404e-05!GO:0006888;ER to Golgi vesicle-mediated transport;6.51882517374646e-05!GO:0009056;catabolic process;6.53065086350797e-05!GO:0009260;ribonucleotide biosynthetic process;7.62628014861477e-05!GO:0007049;cell cycle;8.55143867127283e-05!GO:0005581;collagen;8.80540616740656e-05!GO:0016607;nuclear speck;8.8728358045358e-05!GO:0005856;cytoskeleton;9.06417516801994e-05!GO:0016881;acid-amino acid ligase activity;0.000101509987799365!GO:0019899;enzyme binding;0.000105509841767558!GO:0030027;lamellipodium;0.000106467482940381!GO:0016126;sterol biosynthetic process;0.000121053508051245!GO:0005770;late endosome;0.000121855853712137!GO:0016564;transcription repressor activity;0.000126573803363243!GO:0022890;inorganic cation transmembrane transporter activity;0.000131817169651192!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00016208426395469!GO:0006613;cotranslational protein targeting to membrane;0.000178245457997698!GO:0016310;phosphorylation;0.00018304691260547!GO:0006259;DNA metabolic process;0.000184185709011385!GO:0032940;secretion by cell;0.00019720093934014!GO:0005788;endoplasmic reticulum lumen;0.000211489870725863!GO:0006606;protein import into nucleus;0.000230183293609257!GO:0008654;phospholipid biosynthetic process;0.000230724251933393!GO:0051246;regulation of protein metabolic process;0.000265855882723827!GO:0065004;protein-DNA complex assembly;0.000269272035523033!GO:0008017;microtubule binding;0.000288490620571058!GO:0006334;nucleosome assembly;0.000299449797356781!GO:0051726;regulation of cell cycle;0.00031662287844803!GO:0006366;transcription from RNA polymerase II promoter;0.000317667117708819!GO:0022008;neurogenesis;0.000320322438754533!GO:0030133;transport vesicle;0.000323417959627156!GO:0016879;ligase activity, forming carbon-nitrogen bonds;0.00032910418592629!GO:0051170;nuclear import;0.000339302986298668!GO:0000074;regulation of progression through cell cycle;0.000355130418088644!GO:0000159;protein phosphatase type 2A complex;0.000386783775641385!GO:0032559;adenyl ribonucleotide binding;0.000421079530497248!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000421115734458749!GO:0015399;primary active transmembrane transporter activity;0.000421115734458749!GO:0030867;rough endoplasmic reticulum membrane;0.000507999898977063!GO:0007265;Ras protein signal transduction;0.000533311526064871!GO:0015980;energy derivation by oxidation of organic compounds;0.000559526947071029!GO:0007272;ensheathment of neurons;0.000595205848720823!GO:0008366;axon ensheathment;0.000595205848720823!GO:0005791;rough endoplasmic reticulum;0.000603256642213125!GO:0000245;spliceosome assembly;0.000603256642213125!GO:0030532;small nuclear ribonucleoprotein complex;0.000607559489434733!GO:0005524;ATP binding;0.000607559489434733!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000642210144501406!GO:0044440;endosomal part;0.000642210144501406!GO:0010008;endosome membrane;0.000642210144501406!GO:0048699;generation of neurons;0.000643634438480703!GO:0005773;vacuole;0.000665866065062302!GO:0044420;extracellular matrix part;0.000669205004046737!GO:0042623;ATPase activity, coupled;0.000683138792321308!GO:0005643;nuclear pore;0.000705186276113951!GO:0031497;chromatin assembly;0.000737718359646586!GO:0051276;chromosome organization and biogenesis;0.000748774947698767!GO:0048468;cell development;0.000749260487385034!GO:0001558;regulation of cell growth;0.000750506787516976!GO:0030136;clathrin-coated vesicle;0.00075439138216284!GO:0050767;regulation of neurogenesis;0.000762040684381149!GO:0016887;ATPase activity;0.000808871306529142!GO:0008610;lipid biosynthetic process;0.000889179984749881!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00090320066873968!GO:0050789;regulation of biological process;0.000912388134914348!GO:0030030;cell projection organization and biogenesis;0.000915429921908735!GO:0048858;cell projection morphogenesis;0.000915429921908735!GO:0032990;cell part morphogenesis;0.000915429921908735!GO:0032446;protein modification by small protein conjugation;0.000924327032994573!GO:0043623;cellular protein complex assembly;0.00095153254367286!GO:0003729;mRNA binding;0.000954673056972573!GO:0030865;cortical cytoskeleton organization and biogenesis;0.000960635029065979!GO:0012506;vesicle membrane;0.000960635029065979!GO:0005583;fibrillar collagen;0.000970478306884611!GO:0009117;nucleotide metabolic process;0.000989166788825705!GO:0009892;negative regulation of metabolic process;0.00101979807707921!GO:0031901;early endosome membrane;0.00107762166001145!GO:0030118;clathrin coat;0.00107762166001145!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00113190268374097!GO:0006916;anti-apoptosis;0.00113603412609583!GO:0005938;cell cortex;0.00119140742190391!GO:0008601;protein phosphatase type 2A regulator activity;0.00120678006179104!GO:0019717;synaptosome;0.00124185778628953!GO:0005730;nucleolus;0.00124185778628953!GO:0030182;neuron differentiation;0.00127459845658!GO:0008154;actin polymerization and/or depolymerization;0.00132787965411718!GO:0001508;regulation of action potential;0.00139954489894169!GO:0008047;enzyme activator activity;0.00141006868542851!GO:0001726;ruffle;0.00141006868542851!GO:0046467;membrane lipid biosynthetic process;0.00141006868542851!GO:0006403;RNA localization;0.00142277205331646!GO:0008250;oligosaccharyl transferase complex;0.0014281317256907!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00142931098566618!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00142931098566618!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00142931098566618!GO:0043566;structure-specific DNA binding;0.00147154568182909!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00152682542794597!GO:0005839;proteasome core complex (sensu Eukaryota);0.00153700951765315!GO:0044433;cytoplasmic vesicle part;0.00153764841242166!GO:0016567;protein ubiquitination;0.00158754638240934!GO:0006752;group transfer coenzyme metabolic process;0.00166404390000445!GO:0016481;negative regulation of transcription;0.00167942943998901!GO:0003714;transcription corepressor activity;0.00167942943998901!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0016999810274264!GO:0043069;negative regulation of programmed cell death;0.00176576539654048!GO:0043492;ATPase activity, coupled to movement of substances;0.00176580105975108!GO:0050657;nucleic acid transport;0.00178944995669304!GO:0051236;establishment of RNA localization;0.00178944995669304!GO:0050658;RNA transport;0.00178944995669304!GO:0019208;phosphatase regulator activity;0.00183209813414812!GO:0000151;ubiquitin ligase complex;0.00198191018023534!GO:0043066;negative regulation of apoptosis;0.00198191018023534!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00198957876176733!GO:0030659;cytoplasmic vesicle membrane;0.00217570459085292!GO:0043209;myelin sheath;0.00217570459085292!GO:0051188;cofactor biosynthetic process;0.00222667329850881!GO:0051920;peroxiredoxin activity;0.00222667329850881!GO:0005875;microtubule associated complex;0.00222667329850881!GO:0016311;dephosphorylation;0.00224783128022998!GO:0043005;neuron projection;0.00226317054958634!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00233443084290438!GO:0030554;adenyl nucleotide binding;0.00233553249901427!GO:0004576;oligosaccharyl transferase activity;0.0024421596699265!GO:0012501;programmed cell death;0.00245004215791634!GO:0003697;single-stranded DNA binding;0.00253613195748814!GO:0007017;microtubule-based process;0.00254708065487569!GO:0006695;cholesterol biosynthetic process;0.00259040103685149!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00262190481597118!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00265612604822463!GO:0016197;endosome transport;0.00265683511047449!GO:0008219;cell death;0.00275103287343006!GO:0016265;death;0.00275103287343006!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.00286723321294756!GO:0006915;apoptosis;0.00294697532215979!GO:0004721;phosphoprotein phosphatase activity;0.00313647567669957!GO:0001725;stress fiber;0.00313964638072409!GO:0032432;actin filament bundle;0.00313964638072409!GO:0031324;negative regulation of cellular metabolic process;0.00328174383247655!GO:0050839;cell adhesion molecule binding;0.00330889269087944!GO:0031968;organelle outer membrane;0.00332993666704558!GO:0005741;mitochondrial outer membrane;0.00332993666704558!GO:0016859;cis-trans isomerase activity;0.00334423054886062!GO:0030137;COPI-coated vesicle;0.00349189180635808!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00375263353584779!GO:0008286;insulin receptor signaling pathway;0.0038060908227656!GO:0019867;outer membrane;0.0038060908227656!GO:0007019;microtubule depolymerization;0.00382945121427504!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00395759530128367!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00395836789231119!GO:0000323;lytic vacuole;0.00400127608346266!GO:0005764;lysosome;0.00400127608346266!GO:0006414;translational elongation;0.00400127608346266!GO:0042802;identical protein binding;0.0043088702571862!GO:0065002;intracellular protein transport across a membrane;0.0043320131746325!GO:0005048;signal sequence binding;0.00434171754876214!GO:0040008;regulation of growth;0.00435582726370241!GO:0005096;GTPase activator activity;0.00453309862356839!GO:0000785;chromatin;0.0045349765639817!GO:0005762;mitochondrial large ribosomal subunit;0.00464507071151122!GO:0000315;organellar large ribosomal subunit;0.00464507071151122!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00473163212259949!GO:0007266;Rho protein signal transduction;0.00473260345383622!GO:0022402;cell cycle process;0.00480231871306199!GO:0045892;negative regulation of transcription, DNA-dependent;0.00484375478155654!GO:0051674;localization of cell;0.00484375478155654!GO:0006928;cell motility;0.00484375478155654!GO:0051789;response to protein stimulus;0.00512162543560089!GO:0006986;response to unfolded protein;0.00512162543560089!GO:0006643;membrane lipid metabolic process;0.00521599329784709!GO:0019888;protein phosphatase regulator activity;0.0055095262600836!GO:0044448;cell cortex part;0.0055095262600836!GO:0051427;hormone receptor binding;0.00562820048434424!GO:0005885;Arp2/3 protein complex;0.00594952576871745!GO:0006612;protein targeting to membrane;0.00617425056513978!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00629410709188377!GO:0004812;aminoacyl-tRNA ligase activity;0.00629410709188377!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00629410709188377!GO:0030132;clathrin coat of coated pit;0.00630991646628138!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00667320143848333!GO:0005100;Rho GTPase activator activity;0.00679481328226681!GO:0004722;protein serine/threonine phosphatase activity;0.00694260474172506!GO:0030660;Golgi-associated vesicle membrane;0.00701468297052256!GO:0030663;COPI coated vesicle membrane;0.00721146026893663!GO:0030126;COPI vesicle coat;0.00721146026893663!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00724785179077863!GO:0019902;phosphatase binding;0.00728088367654254!GO:0051287;NAD binding;0.00737864967890787!GO:0016050;vesicle organization and biogenesis;0.00756246018760897!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00760755840774746!GO:0004298;threonine endopeptidase activity;0.00762843624448301!GO:0051261;protein depolymerization;0.00814221609202445!GO:0016791;phosphoric monoester hydrolase activity;0.00816659011506203!GO:0007050;cell cycle arrest;0.00831985381852698!GO:0006470;protein amino acid dephosphorylation;0.00832853073607348!GO:0030658;transport vesicle membrane;0.00851418519752834!GO:0048487;beta-tubulin binding;0.00872609187075194!GO:0033116;ER-Golgi intermediate compartment membrane;0.00888445847151783!GO:0050794;regulation of cellular process;0.0088919287776951!GO:0045296;cadherin binding;0.00894940235191705!GO:0005813;centrosome;0.00915416812733337!GO:0035257;nuclear hormone receptor binding;0.00932605060706415!GO:0043488;regulation of mRNA stability;0.00938088465041965!GO:0043487;regulation of RNA stability;0.00938088465041965!GO:0048167;regulation of synaptic plasticity;0.00938091603046453!GO:0016568;chromatin modification;0.00947958068809339!GO:0005869;dynactin complex;0.00961572532081749!GO:0008139;nuclear localization sequence binding;0.00997150018629423!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.00997150018629423!GO:0050811;GABA receptor binding;0.0105349574155567!GO:0009966;regulation of signal transduction;0.010898327126154!GO:0016584;nucleosome positioning;0.0110097414053551!GO:0051028;mRNA transport;0.0111767050568976!GO:0031114;regulation of microtubule depolymerization;0.0112086066721712!GO:0007026;negative regulation of microtubule depolymerization;0.0112086066721712!GO:0006607;NLS-bearing substrate import into nucleus;0.0119611748857444!GO:0006650;glycerophospholipid metabolic process;0.0121668155641806!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0125549482733094!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0125549482733094!GO:0019904;protein domain specific binding;0.0127182183695588!GO:0043038;amino acid activation;0.012927171980688!GO:0006418;tRNA aminoacylation for protein translation;0.012927171980688!GO:0043039;tRNA aminoacylation;0.012927171980688!GO:0006402;mRNA catabolic process;0.013096476366552!GO:0000904;cellular morphogenesis during differentiation;0.0132603159366732!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.0132603159366732!GO:0004667;prostaglandin-D synthase activity;0.0132603159366732!GO:0050802;circadian sleep/wake cycle, sleep;0.0132603159366732!GO:0022410;circadian sleep/wake cycle process;0.0132603159366732!GO:0042749;regulation of circadian sleep/wake cycle;0.0132603159366732!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0137905321376188!GO:0015002;heme-copper terminal oxidase activity;0.0137905321376188!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0137905321376188!GO:0004129;cytochrome-c oxidase activity;0.0137905321376188!GO:0006891;intra-Golgi vesicle-mediated transport;0.0138553165589439!GO:0009165;nucleotide biosynthetic process;0.0147080254189093!GO:0031175;neurite development;0.0147262349488597!GO:0005912;adherens junction;0.0148456367972862!GO:0048667;neuron morphogenesis during differentiation;0.0150851419717185!GO:0048812;neurite morphogenesis;0.0150851419717185!GO:0050803;regulation of synapse structure and activity;0.0151270491605302!GO:0007242;intracellular signaling cascade;0.0164793915826247!GO:0001666;response to hypoxia;0.0169157268928787!GO:0005815;microtubule organizing center;0.0169603775141025!GO:0048666;neuron development;0.0169603775141025!GO:0046930;pore complex;0.0169603775141025!GO:0030041;actin filament polymerization;0.0170587395194133!GO:0031072;heat shock protein binding;0.0171306234986874!GO:0030426;growth cone;0.0171693061738123!GO:0000314;organellar small ribosomal subunit;0.0172815890421503!GO:0005763;mitochondrial small ribosomal subunit;0.0172815890421503!GO:0051087;chaperone binding;0.0177138781232651!GO:0006672;ceramide metabolic process;0.0177138781232651!GO:0007005;mitochondrion organization and biogenesis;0.0181393560793436!GO:0018196;peptidyl-asparagine modification;0.018541968799826!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.018541968799826!GO:0005586;collagen type III;0.0188208197385433!GO:0042552;myelination;0.0189328546417988!GO:0031109;microtubule polymerization or depolymerization;0.0193210542894548!GO:0006644;phospholipid metabolic process;0.0200052121265469!GO:0030031;cell projection biogenesis;0.020807621421063!GO:0030427;site of polarized growth;0.0209776296343474!GO:0000059;protein import into nucleus, docking;0.0211529603976282!GO:0043284;biopolymer biosynthetic process;0.0212967521593871!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0212967521593871!GO:0033043;regulation of organelle organization and biogenesis;0.0212967521593871!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0215031326490735!GO:0006595;polyamine metabolic process;0.0216701037288128!GO:0030127;COPII vesicle coat;0.0217708304840352!GO:0012507;ER to Golgi transport vesicle membrane;0.0217708304840352!GO:0003746;translation elongation factor activity;0.0220210773800049!GO:0006892;post-Golgi vesicle-mediated transport;0.0220210773800049!GO:0003713;transcription coactivator activity;0.0220537646123062!GO:0030176;integral to endoplasmic reticulum membrane;0.0225656201682233!GO:0030125;clathrin vesicle coat;0.0235028928789357!GO:0030665;clathrin coated vesicle membrane;0.0235028928789357!GO:0048500;signal recognition particle;0.0236926408789194!GO:0043021;ribonucleoprotein binding;0.0238056714013836!GO:0016408;C-acyltransferase activity;0.0242460193298257!GO:0035035;histone acetyltransferase binding;0.0250298112433678!GO:0051270;regulation of cell motility;0.0253408726625511!GO:0009108;coenzyme biosynthetic process;0.0260046784555737!GO:0046474;glycerophospholipid biosynthetic process;0.0265683942150599!GO:0046519;sphingoid metabolic process;0.0268045897930032!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.0268480811082528!GO:0005092;GDP-dissociation inhibitor activity;0.0269607139948626!GO:0043681;protein import into mitochondrion;0.0271962768180452!GO:0051168;nuclear export;0.0274778628820497!GO:0042585;germinal vesicle;0.0277065619147067!GO:0051252;regulation of RNA metabolic process;0.0280535493157565!GO:0033673;negative regulation of kinase activity;0.028116229961101!GO:0006469;negative regulation of protein kinase activity;0.028116229961101!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0286045107477557!GO:0022610;biological adhesion;0.0288445275470297!GO:0007155;cell adhesion;0.0288445275470297!GO:0008147;structural constituent of bone;0.0292060583969193!GO:0050435;beta-amyloid metabolic process;0.029316737697574!GO:0008090;retrograde axon cargo transport;0.0301210250323818!GO:0033596;TSC1-TSC2 complex;0.0301210250323818!GO:0033693;neurofilament bundle assembly;0.0301210250323818!GO:0044262;cellular carbohydrate metabolic process;0.0308651710994425!GO:0022406;membrane docking;0.0308651710994425!GO:0048278;vesicle docking;0.0308651710994425!GO:0019911;structural constituent of myelin sheath;0.0311748273054645!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0312376800629065!GO:0005883;neurofilament;0.0318554156730063!GO:0060053;neurofilament cytoskeleton;0.0318554156730063!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0323458079758374!GO:0055083;monovalent inorganic anion homeostasis;0.0323458079758374!GO:0055064;chloride ion homeostasis;0.0323458079758374!GO:0030644;cellular chloride ion homeostasis;0.0323458079758374!GO:0030199;collagen fibril organization;0.0327171996746569!GO:0004113;2',3'-cyclic-nucleotide 3'-phosphodiesterase activity;0.0335594982095943!GO:0009214;cyclic nucleotide catabolic process;0.0335594982095943!GO:0044255;cellular lipid metabolic process;0.0337056539200505!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0340845189686756!GO:0045047;protein targeting to ER;0.0340845189686756!GO:0006665;sphingolipid metabolic process;0.0351886427247133!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0354664264125432!GO:0017166;vinculin binding;0.0358712350920543!GO:0006979;response to oxidative stress;0.0359505561304797!GO:0006509;membrane protein ectodomain proteolysis;0.0362593480260075!GO:0033619;membrane protein proteolysis;0.0362593480260075!GO:0031902;late endosome membrane;0.0362660684382751!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0363439197447378!GO:0030424;axon;0.0364913572068183!GO:0003711;transcription elongation regulator activity;0.0364913572068183!GO:0050749;apolipoprotein E receptor binding;0.0367885266802616!GO:0007167;enzyme linked receptor protein signaling pathway;0.0376223298169737!GO:0005667;transcription factor complex;0.0376288823162618!GO:0005868;cytoplasmic dynein complex;0.0377804232538143!GO:0051056;regulation of small GTPase mediated signal transduction;0.0380004268772663!GO:0006904;vesicle docking during exocytosis;0.0380004268772663!GO:0051348;negative regulation of transferase activity;0.038057463504078!GO:0001578;microtubule bundle formation;0.0386304812624058!GO:0005801;cis-Golgi network;0.0386550351480787!GO:0007409;axonogenesis;0.0392797110263066!GO:0019903;protein phosphatase binding;0.0396864319477931!GO:0007160;cell-matrix adhesion;0.0396864319477931!GO:0031628;opioid receptor binding;0.0397535208759572!GO:0031852;mu-type opioid receptor binding;0.0397535208759572!GO:0030134;ER to Golgi transport vesicle;0.0397574030337957!GO:0031589;cell-substrate adhesion;0.0397621500144004!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0403850176093549!GO:0016563;transcription activator activity;0.0403850176093549!GO:0050770;regulation of axonogenesis;0.0404125873447339!GO:0019843;rRNA binding;0.0407938838734582!GO:0007006;mitochondrial membrane organization and biogenesis;0.0407938838734582!GO:0030832;regulation of actin filament length;0.0410061317179532!GO:0007219;Notch signaling pathway;0.0413164116035057!GO:0030911;TPR domain binding;0.0413586378539461!GO:0030742;GTP-dependent protein binding;0.0413915849263544!GO:0032535;regulation of cellular component size;0.041777536582042!GO:0001540;beta-amyloid binding;0.0419427693006763!GO:0006818;hydrogen transport;0.0428418004368851!GO:0040012;regulation of locomotion;0.044986522318177!GO:0008312;7S RNA binding;0.045055578932058!GO:0009081;branched chain family amino acid metabolic process;0.0452907428102147!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0457518837876696!GO:0003690;double-stranded DNA binding;0.047344649195751!GO:0016853;isomerase activity;0.0490368781482543!GO:0031371;ubiquitin conjugating enzyme complex;0.04947060879162!GO:0016272;prefoldin complex;0.0496478930058031!GO:0040011;locomotion;0.0498419488071117 | |||
|sample_id=10056 | |sample_id=10056 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=spinal cord | |sample_tissue=spinal cord | ||
|top_motifs=DBP:3.27666669141;HOX{A6,A7,B6,B7}:3.22968181235;SOX5:3.21700716068;MED-1{core}:3.08004502252;MYFfamily:2.99559536473;SOX{8,9,10}:2.9389146543;ZNF384:2.90718811361;ZFP161:2.86970101784;GCM1,2:2.8541300097;HIC1:2.83552128453;MTE{core}:2.81006705045;SOX2:2.79441076449;REST:2.78933841281;MAZ:2.7855792436;NHLH1,2:2.78255763796;TFAP2B:2.77825821858;EGR1..3:2.70768012595;RBPJ:2.7014654955;SMAD1..7,9:2.62846300441;MZF1:2.59083022703;MYBL2:2.58759069;BREu{core}:2.48803468913;MTF1:2.4869358331;GTF2I:2.45017094112;SPZ1:2.42807567858;EP300:2.41824965675;GATA4:2.3898228692;KLF4:2.34158988803;PATZ1:2.31466650156;PAX5:2.30772834289;GFI1B:2.29926266417;POU5F1:2.26577272352;ZBTB6:2.25223624192;FOXP1:2.17158100055;RREB1:2.16685080508;FOXM1:2.1462819294;SOX17:2.1449783122;PRDM1:2.1277577898;RFX1:2.11683668164;CUX2:2.0794811963;ZIC1..3:2.07795846851;ZNF423:2.03121661395;NFIX:1.95381552367;PRRX1,2:1.88495267553;NKX2-3_NKX2-5:1.83925582572;EBF1:1.82720655485;LMO2:1.82369786999;NKX3-2:1.79487015609;TGIF1:1.79418956157;TOPORS:1.72808955215;TFAP2{A,C}:1.66486181466;XBP1:1.63105416387;ATF2:1.6247726618;TFDP1:1.54538307191;LEF1_TCF7_TCF7L1,2:1.48082770803;SP1:1.47878110179;TLX1..3_NFIC{dimer}:1.41368781977;ONECUT1,2:1.41183136739;IKZF2:1.40332007012;OCT4_SOX2{dimer}:1.40141695462;ESR1:1.39530665145;HOX{A4,D4}:1.37888049761;FOXD3:1.37572018799;TAL1_TCF{3,4,12}:1.37517771426;TBP:1.36174259826;POU3F1..4:1.30588843229;GLI1..3:1.28752391394;JUN:1.23439897841;GTF2A1,2:1.23177148146;HBP1_HMGB_SSRP1_UBTF:1.21006460023;FOXL1:1.19301090274;VSX1,2:1.15600797886;POU6F1:1.14428147725;NKX6-1,2:1.1306534054;PAX6:1.10089356641;BPTF:1.07738595271;ADNP_IRX_SIX_ZHX:1.05110900337;FOXP3:1.03723990837;GFI1:1.03175928322;HMGA1,2:1.02193100737;NR6A1:1.01190589484;POU1F1:1.00730715702;ALX1:0.980750289385;RFX2..5_RFXANK_RFXAP:0.958429757986;NANOG:0.918476776634;MAFB:0.901977763524;IKZF1:0.897618908615;XCPE1{core}:0.871354972585;FOXQ1:0.862569764455;AHR_ARNT_ARNT2:0.831699121505;HOXA9_MEIS1:0.822713939418;CDC5L:0.809777021286;LHX3,4:0.761830870879;NKX2-1,4:0.743510056248;FOX{I1,J2}:0.696484968179;NR5A1,2:0.681116351795;NR3C1:0.680796138914;MEF2{A,B,C,D}:0.643154665241;RORA:0.613882145984;ZNF238:0.604292913526;UFEwm:0.565062446822;NRF1:0.521150125461;GZF1:0.501895495381;NFY{A,B,C}:0.47173208943;T:0.467325282016;AIRE:0.461201137574;FOX{F1,F2,J1}:0.395201728825;ZNF143:0.379444283067;TFCP2:0.357010650747;NFATC1..3:0.356861737743;GATA6:0.310686900065;TEAD1:0.300130547712;TEF:0.216838808892;PBX1:0.202882630887;HMX1:0.181677042143;STAT2,4,6:0.178524423968;YY1:0.172724700952;NR1H4:0.154820674959;TFAP4:0.144918323238;ARID5B:0.131299213327;RXR{A,B,G}:0.101047882969;NKX3-1:0.0886125158971;PAX4:0.0870594148309;CREB1:0.0504140384261;DMAP1_NCOR{1,2}_SMARC:0.0439475489288;ALX4:0.0403291349071;SRF:0.0339489348668;TBX4,5:-0.045108296622;IRF7:-0.0518436103466;FOXA2:-0.0708415538115;PAX2:-0.0709347277481;MYOD1:-0.0769210630887;NANOG{mouse}:-0.0780891272131;ZEB1:-0.092043756126;STAT1,3:-0.0960920312849;FOXO1,3,4:-0.12345742785;HNF4A_NR2F1,2:-0.126339505925;CDX1,2,4:-0.128837360915;AR:-0.129081826262;PDX1:-0.155336051286;PITX1..3:-0.160371983766;SREBF1,2:-0.171814497845;PAX3,7:-0.173699626517;FOXN1:-0.184670197639;TLX2:-0.191839879665;PAX1,9:-0.203969383567;EVI1:-0.223155170691;NFIL3:-0.236363339644;IRF1,2:-0.26521221592;ATF4:-0.283479152508;HNF1A:-0.288922043305;ATF6:-0.299304985895;ZNF148:-0.314017204726;FOX{D1,D2}:-0.342299592057;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.403314563813;CRX:-0.428381109971;HAND1,2:-0.45629433418;ATF5_CREB3:-0.462369838223;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.477768907382;HSF1,2:-0.488587554824;RXRA_VDR{dimer}:-0.51772401976;ZBTB16:-0.545749509653;NFE2L2:-0.58464639309;SNAI1..3:-0.594514366347;E2F1..5:-0.630950517734;SPIB:-0.710048245681;ESRRA:-0.745294181636;SPI1:-0.758748426459;TP53:-0.822303978078;ETS1,2:-0.845100662268;NFKB1_REL_RELA:-0.859079568641;bHLH_family:-0.897876945803;RUNX1..3:-0.952343946763;PAX8:-0.954438431545;PPARG:-0.978570946813;HIF1A:-1.01548145879;CEBPA,B_DDIT3:-1.13190443375;NFE2L1:-1.13406588058;FOSL2:-1.1432561121;FOS_FOS{B,L1}_JUN{B,D}:-1.17807081128;BACH2:-1.19754208897;HLF:-1.27927804649;NFE2:-1.29347026188;HOX{A5,B5}:-1.32064583411;EN1,2:-1.43846177629;ELK1,4_GABP{A,B1}:-1.46541764985;POU2F1..3:-1.59920897497;NKX2-2,8:-1.60265523196;MYB:-1.60824194335;ELF1,2,4:-1.62439964759;HES1:-1.79624053888;STAT5{A,B}:-3.08068458381 | |top_motifs=DBP:3.27666669141;HOX{A6,A7,B6,B7}:3.22968181235;SOX5:3.21700716068;MED-1{core}:3.08004502252;MYFfamily:2.99559536473;SOX{8,9,10}:2.9389146543;ZNF384:2.90718811361;ZFP161:2.86970101784;GCM1,2:2.8541300097;HIC1:2.83552128453;MTE{core}:2.81006705045;SOX2:2.79441076449;REST:2.78933841281;MAZ:2.7855792436;NHLH1,2:2.78255763796;TFAP2B:2.77825821858;EGR1..3:2.70768012595;RBPJ:2.7014654955;SMAD1..7,9:2.62846300441;MZF1:2.59083022703;MYBL2:2.58759069;BREu{core}:2.48803468913;MTF1:2.4869358331;GTF2I:2.45017094112;SPZ1:2.42807567858;EP300:2.41824965675;GATA4:2.3898228692;KLF4:2.34158988803;PATZ1:2.31466650156;PAX5:2.30772834289;GFI1B:2.29926266417;POU5F1:2.26577272352;ZBTB6:2.25223624192;FOXP1:2.17158100055;RREB1:2.16685080508;FOXM1:2.1462819294;SOX17:2.1449783122;PRDM1:2.1277577898;RFX1:2.11683668164;CUX2:2.0794811963;ZIC1..3:2.07795846851;ZNF423:2.03121661395;NFIX:1.95381552367;PRRX1,2:1.88495267553;NKX2-3_NKX2-5:1.83925582572;EBF1:1.82720655485;LMO2:1.82369786999;NKX3-2:1.79487015609;TGIF1:1.79418956157;TOPORS:1.72808955215;TFAP2{A,C}:1.66486181466;XBP1:1.63105416387;ATF2:1.6247726618;TFDP1:1.54538307191;LEF1_TCF7_TCF7L1,2:1.48082770803;SP1:1.47878110179;TLX1..3_NFIC{dimer}:1.41368781977;ONECUT1,2:1.41183136739;IKZF2:1.40332007012;OCT4_SOX2{dimer}:1.40141695462;ESR1:1.39530665145;HOX{A4,D4}:1.37888049761;FOXD3:1.37572018799;TAL1_TCF{3,4,12}:1.37517771426;TBP:1.36174259826;POU3F1..4:1.30588843229;GLI1..3:1.28752391394;JUN:1.23439897841;GTF2A1,2:1.23177148146;HBP1_HMGB_SSRP1_UBTF:1.21006460023;FOXL1:1.19301090274;VSX1,2:1.15600797886;POU6F1:1.14428147725;NKX6-1,2:1.1306534054;PAX6:1.10089356641;BPTF:1.07738595271;ADNP_IRX_SIX_ZHX:1.05110900337;FOXP3:1.03723990837;GFI1:1.03175928322;HMGA1,2:1.02193100737;NR6A1:1.01190589484;POU1F1:1.00730715702;ALX1:0.980750289385;RFX2..5_RFXANK_RFXAP:0.958429757986;NANOG:0.918476776634;MAFB:0.901977763524;IKZF1:0.897618908615;XCPE1{core}:0.871354972585;FOXQ1:0.862569764455;AHR_ARNT_ARNT2:0.831699121505;HOXA9_MEIS1:0.822713939418;CDC5L:0.809777021286;LHX3,4:0.761830870879;NKX2-1,4:0.743510056248;FOX{I1,J2}:0.696484968179;NR5A1,2:0.681116351795;NR3C1:0.680796138914;MEF2{A,B,C,D}:0.643154665241;RORA:0.613882145984;ZNF238:0.604292913526;UFEwm:0.565062446822;NRF1:0.521150125461;GZF1:0.501895495381;NFY{A,B,C}:0.47173208943;T:0.467325282016;AIRE:0.461201137574;FOX{F1,F2,J1}:0.395201728825;ZNF143:0.379444283067;TFCP2:0.357010650747;NFATC1..3:0.356861737743;GATA6:0.310686900065;TEAD1:0.300130547712;TEF:0.216838808892;PBX1:0.202882630887;HMX1:0.181677042143;STAT2,4,6:0.178524423968;YY1:0.172724700952;NR1H4:0.154820674959;TFAP4:0.144918323238;ARID5B:0.131299213327;RXR{A,B,G}:0.101047882969;NKX3-1:0.0886125158971;PAX4:0.0870594148309;CREB1:0.0504140384261;DMAP1_NCOR{1,2}_SMARC:0.0439475489288;ALX4:0.0403291349071;SRF:0.0339489348668;TBX4,5:-0.045108296622;IRF7:-0.0518436103466;FOXA2:-0.0708415538115;PAX2:-0.0709347277481;MYOD1:-0.0769210630887;NANOG{mouse}:-0.0780891272131;ZEB1:-0.092043756126;STAT1,3:-0.0960920312849;FOXO1,3,4:-0.12345742785;HNF4A_NR2F1,2:-0.126339505925;CDX1,2,4:-0.128837360915;AR:-0.129081826262;PDX1:-0.155336051286;PITX1..3:-0.160371983766;SREBF1,2:-0.171814497845;PAX3,7:-0.173699626517;FOXN1:-0.184670197639;TLX2:-0.191839879665;PAX1,9:-0.203969383567;EVI1:-0.223155170691;NFIL3:-0.236363339644;IRF1,2:-0.26521221592;ATF4:-0.283479152508;HNF1A:-0.288922043305;ATF6:-0.299304985895;ZNF148:-0.314017204726;FOX{D1,D2}:-0.342299592057;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.403314563813;CRX:-0.428381109971;HAND1,2:-0.45629433418;ATF5_CREB3:-0.462369838223;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.477768907382;HSF1,2:-0.488587554824;RXRA_VDR{dimer}:-0.51772401976;ZBTB16:-0.545749509653;NFE2L2:-0.58464639309;SNAI1..3:-0.594514366347;E2F1..5:-0.630950517734;SPIB:-0.710048245681;ESRRA:-0.745294181636;SPI1:-0.758748426459;TP53:-0.822303978078;ETS1,2:-0.845100662268;NFKB1_REL_RELA:-0.859079568641;bHLH_family:-0.897876945803;RUNX1..3:-0.952343946763;PAX8:-0.954438431545;PPARG:-0.978570946813;HIF1A:-1.01548145879;CEBPA,B_DDIT3:-1.13190443375;NFE2L1:-1.13406588058;FOSL2:-1.1432561121;FOS_FOS{B,L1}_JUN{B,D}:-1.17807081128;BACH2:-1.19754208897;HLF:-1.27927804649;NFE2:-1.29347026188;HOX{A5,B5}:-1.32064583411;EN1,2:-1.43846177629;ELK1,4_GABP{A,B1}:-1.46541764985;POU2F1..3:-1.59920897497;NKX2-2,8:-1.60265523196;MYB:-1.60824194335;ELF1,2,4:-1.62439964759;HES1:-1.79624053888;STAT5{A,B}:-3.08068458381 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10056-101H2;search_select_hide=table117:FF:10056-101H2 | |||
}} | }} | ||
Latest revision as of 12:18, 3 June 2020
| Name: | spinal cord, fetal, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11764 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11764
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11764
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0296 |
| 10 | 10 | 0.0353 |
| 100 | 100 | 0.375 |
| 101 | 101 | 0.903 |
| 102 | 102 | 0.899 |
| 103 | 103 | 0.0636 |
| 104 | 104 | 0.239 |
| 105 | 105 | 0.162 |
| 106 | 106 | 0.157 |
| 107 | 107 | 0.541 |
| 108 | 108 | 0.765 |
| 109 | 109 | 0.00259 |
| 11 | 11 | 0.0154 |
| 110 | 110 | 0.0434 |
| 111 | 111 | 0.131 |
| 112 | 112 | 0.394 |
| 113 | 113 | 0.266 |
| 114 | 114 | 0.0313 |
| 115 | 115 | 0.331 |
| 116 | 116 | 0.47 |
| 117 | 117 | 0.00393 |
| 118 | 118 | 0.0897 |
| 119 | 119 | 0.149 |
| 12 | 12 | 0.539 |
| 120 | 120 | 0.161 |
| 121 | 121 | 0.735 |
| 122 | 122 | 0.736 |
| 123 | 123 | 0.56 |
| 124 | 124 | 0.393 |
| 125 | 125 | 0.462 |
| 126 | 126 | 0.106 |
| 127 | 127 | 0.176 |
| 128 | 128 | 0.45 |
| 129 | 129 | 0.467 |
| 13 | 13 | 0.00685 |
| 130 | 130 | 0.418 |
| 131 | 131 | 0.24 |
| 132 | 132 | 0.349 |
| 133 | 133 | 0.0817 |
| 134 | 134 | 0.645 |
| 135 | 135 | 0.263 |
| 136 | 136 | 0.0402 |
| 137 | 137 | 0.316 |
| 138 | 138 | 0.567 |
| 139 | 139 | 0.0812 |
| 14 | 14 | 0.668 |
| 140 | 140 | 0.186 |
| 141 | 141 | 0.218 |
| 142 | 142 | 0.784 |
| 143 | 143 | 0.00108 |
| 144 | 144 | 0.947 |
| 145 | 145 | 0.396 |
| 146 | 146 | 0.585 |
| 147 | 147 | 0.767 |
| 148 | 148 | 0.193 |
| 149 | 149 | 0.163 |
| 15 | 15 | 0.0341 |
| 150 | 150 | 0.239 |
| 151 | 151 | 0.662 |
| 152 | 152 | 0.174 |
| 153 | 153 | 0.451 |
| 154 | 154 | 0.664 |
| 155 | 155 | 0.216 |
| 156 | 156 | 0.427 |
| 157 | 157 | 0.479 |
| 158 | 158 | 0.752 |
| 159 | 159 | 0.155 |
| 16 | 16 | 0.134 |
| 160 | 160 | 0.257 |
| 161 | 161 | 0.149 |
| 162 | 162 | 0.551 |
| 163 | 163 | 0.524 |
| 164 | 164 | 0.0359 |
| 165 | 165 | 0.352 |
| 166 | 166 | 0.255 |
| 167 | 167 | 0.239 |
| 168 | 168 | 0.625 |
| 169 | 169 | 0.0109 |
| 17 | 17 | 0.128 |
| 18 | 18 | 0.0657 |
| 19 | 19 | 0.415 |
| 2 | 2 | 0.932 |
| 20 | 20 | 0.15 |
| 21 | 21 | 0.16 |
| 22 | 22 | 0.283 |
| 23 | 23 | 0.484 |
| 24 | 24 | 0.0494 |
| 25 | 25 | 0.47 |
| 26 | 26 | 5.32485e-4 |
| 27 | 27 | 0.664 |
| 28 | 28 | 0.507 |
| 29 | 29 | 0.00809 |
| 3 | 3 | 0.031 |
| 30 | 30 | 0.437 |
| 31 | 31 | 0.917 |
| 32 | 32 | 0.801 |
| 33 | 33 | 0.0939 |
| 34 | 34 | 0.997 |
| 35 | 35 | 0.391 |
| 36 | 36 | 0.103 |
| 37 | 37 | 0.0292 |
| 38 | 38 | 0.254 |
| 39 | 39 | 0.805 |
| 4 | 4 | 0.936 |
| 40 | 40 | 0.0557 |
| 41 | 41 | 0.155 |
| 42 | 42 | 0.123 |
| 43 | 43 | 0.131 |
| 44 | 44 | 0.252 |
| 45 | 45 | 0.852 |
| 46 | 46 | 0.0516 |
| 47 | 47 | 0.0426 |
| 48 | 48 | 0.0697 |
| 49 | 49 | 0.13 |
| 5 | 5 | 0.319 |
| 50 | 50 | 0.576 |
| 51 | 51 | 0.39 |
| 52 | 52 | 0.931 |
| 53 | 53 | 0.899 |
| 54 | 54 | 0.466 |
| 55 | 55 | 0.242 |
| 56 | 56 | 0.52 |
| 57 | 57 | 0.313 |
| 58 | 58 | 0.22 |
| 59 | 59 | 0.207 |
| 6 | 6 | 0.977 |
| 60 | 60 | 0.195 |
| 61 | 61 | 0.0828 |
| 62 | 62 | 0.13 |
| 63 | 63 | 0.194 |
| 64 | 64 | 0.202 |
| 65 | 65 | 0.302 |
| 66 | 66 | 0.11 |
| 67 | 67 | 0.302 |
| 68 | 68 | 0.348 |
| 69 | 69 | 0.763 |
| 7 | 7 | 0.105 |
| 70 | 70 | 0.0109 |
| 71 | 71 | 0.00779 |
| 72 | 72 | 0.222 |
| 73 | 73 | 0.0394 |
| 74 | 74 | 0.793 |
| 75 | 75 | 0.0133 |
| 76 | 76 | 0.149 |
| 77 | 77 | 0.239 |
| 78 | 78 | 0.00829 |
| 79 | 79 | 0.998 |
| 8 | 8 | 0.103 |
| 80 | 80 | 0.686 |
| 81 | 81 | 0.583 |
| 82 | 82 | 0.545 |
| 83 | 83 | 0.358 |
| 84 | 84 | 0.677 |
| 85 | 85 | 0.391 |
| 86 | 86 | 0.136 |
| 87 | 87 | 0.00488 |
| 88 | 88 | 0.731 |
| 89 | 89 | 0.427 |
| 9 | 9 | 0.649 |
| 90 | 90 | 0.0698 |
| 91 | 91 | 0.794 |
| 92 | 92 | 0.398 |
| 93 | 93 | 0.297 |
| 94 | 94 | 0.058 |
| 95 | 95 | 0.0114 |
| 96 | 96 | 0.318 |
| 97 | 97 | 0.891 |
| 98 | 98 | 0.11 |
| 99 | 99 | 0.787 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11764
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002240 (spinal cord)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0000489 (cavitated compound organ)
0005174 (dorsal region element)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001137 (dorsum)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010056 (human spinal cord - fetal sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006241 (future spinal cord)
UBERON:0003057 (chordal neural plate)
UBERON:0010316 (germ layer / neural crest)
