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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000945,UBERON:0000926,UBERON:0000479,UBERON:0001007,UBERON:0000077,UBERON:0000062,UBERON:0004120,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0004921,UBERON:0005423,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0010039,UBERON:0003104,UBERON:0000925,UBERON:0006598,UBERON:0004185,UBERON:0002532,UBERON:0001555,UBERON:0005409,UBERON:0007026,UBERON:0001041,UBERON:0009142,UBERON:0006595,UBERON:0006603
|DRA_sample_Accession=CAGE@SAMD00005331
|accession_numbers=CAGE;DRX008732;DRR009604;DRZ001029;DRZ002414;DRZ012379;DRZ013764
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000945,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010039,UBERON:0010317,UBERON:0001555,UBERON:0005409,UBERON:0001041
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010062
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr19:46801639..46801699,+!p1@HIF3A!2.33!211.07!HIF3A;;chr6:1312325..1312340,+!p1@FOXQ1!2.30!319.16!FOXQ1;;chr4:174451370..174451387,-!p1@HAND2!2.13!132.92!HAND2;;chr16:86544113..86544145,+!p1@FOXF1!2.00!120.51!FOXF1;;chr1:201979703..201979721,+!p2@ELF3!1.95!88.37!ELF3;;chr11:61520075..61520136,+!p1@C11orf9!1.94!176.01!C11orf9;;chr1:201979743..201979762,+!p1@ELF3!1.85!70.11!ELF3;;chr18:19749541..19749557,+!p1@GATA6!1.83!201.57!GATA6;;chr19:46800289..46800327,+!p2@HIF3A!1.76!56.24!HIF3A;;chr11:113930425..113930471,+!p1@ZBTB16!1.75!78.15!ZBTB16;;chr2:122042770..122042785,-!p1@TFCP2L1!1.75!55.51!TFCP2L1;;chr6:134210243..134210257,+!p1@TCF21!1.72!51.12!TCF21;;chr5:50679228..50679288,+!p1@ISL1!1.70!48.93!ISL1;;chr4:174451350..174451363,-!p3@HAND2!1.69!47.47!HAND2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.68!46.74!PEG3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.67!46.01!ZBED1;;chr3:169381420..169381535,-!p1@MECOM!1.63!48.20!MECOM;;chr3:12330560..12330579,+!p1@PPARG!1.62!46.74!PPARG;;chr9:96717629..96717644,-!p1@BARX1!1.62!40.90!BARX1;;chr1:27240455..27240474,-!p1@NR0B2!1.57!35.79!NR0B2;;chr16:85932760..85932775,+!p1@IRF8!1.56!35.06!IRF8;;chr14:38064429..38064486,-!p1@FOXA1!1.53!32.87!FOXA1;;chr20:62680984..62680999,-!p1@SOX18!1.51!41.63!SOX18;;chr19:46367576..46367592,+!p1@FOXA3!1.51!31.40!FOXA3;;chr20:50179368..50179392,-!p2@NFATC2!1.47!36.52!NFATC2;;chr1:216896780..216896800,-!p2@ESRRG!1.47!28.48!ESRRG;;chr11:34642612..34642646,+!p1@EHF!1.46!27.75!EHF;;chr18:45663490..45663528,-!p2@ZBTB7C!1.45!27.02!ZBTB7C;;chr19:54041669..54041697,+!p2@ZNF331!1.44!26.29!ZNF331;;chr1:40105299..40105326,-!p1@HEYL!1.44!26.29!HEYL;;chr18:19749517..19749531,+!p3@GATA6!1.42!44.55!GATA6;;chr8:106330656..106330684,+!p1@ZFPM2!1.40!62.08!ZFPM2;;chr1:61548225..61548299,+!p1@NFIA!1.38!292.86!NFIA;;chr13:72441315..72441454,-!p1@DACH1!1.37!43.82!DACH1;;chr6:34524093..34524135,-!p1@SPDEF!1.33!20.45!SPDEF;;chr11:113930401..113930422,+!p3@ZBTB16!1.32!19.72!ZBTB16;;chr15:57511609..57511651,+!p2@TCF12!1.30!31.40!TCF12;;chr2:157189180..157189290,-!p1@NR4A2!1.29!93.48!NR4A2;;chr6:1389789..1389821,+!p1@FOXF2!1.29!25.56!FOXF2;;chr19:46806868..46806883,+!p3@HIF3A!1.28!18.26!HIF3A;;chr20:42984330..42984364,+!p2@HNF4A!1.28!18.26!HNF4A;;chr8:11561684..11561751,+!p1@GATA4!1.27!17.53!GATA4;;chr1:209979467..209979494,-!p1@IRF6!1.25!18.99!IRF6;;chr20:50159198..50159299,-!p1@NFATC2!1.24!24.10!NFATC2;;chr8:102504651..102504683,+!p1@GRHL2!1.23!16.07!GRHL2;;chr15:96873984..96873999,+!p3@NR2F2!1.22!112.47!NR2F2;;chr1:214161272..214161322,+!p1@PROX1!1.21!21.18!PROX1;;chr1:151804244..151804310,-!p1@RORC!1.21!15.34!RORC;;chr19:54058073..54058088,+!p1@ZNF331!1.19!14.61!ZNF331;;chr12:52445218..52445237,+!p1@NR4A1!1.18!176.74!NR4A1;;chr2:66662281..66662308,+!p1@MEIS1!1.17!47.47!MEIS1;;chr9:14314131..14314147,-!p2@NFIB!1.15!72.30!NFIB;;chr3:126076264..126076305,-!p2@KLF15!1.15!18.26!KLF15;;chr1:216896752..216896778,-!p1@ESRRG!1.15!13.15!ESRRG;;chr19:16435625..16435682,+!p1@KLF2!1.13!396.57!KLF2;;chrX:106960285..106960299,-!p1@TSC22D3!1.13!329.38!TSC22D3;;chr11:46299199..46299233,+!p1@CREB3L1!1.12!62.81!CREB3L1;;chr5:158526917..158526932,-!p1@EBF1!1.12!30.67!EBF1;;chrX:131623044..131623089,-!p1@MBNL3!1.11!49.66!MBNL3;;chr7:113726357..113726443,+!p1@FOXP2!1.11!20.45!FOXP2;;chr1:164528687..164528711,+!p6@PBX1!1.11!13.88!PBX1;;chr2:60780753..60780800,-!p1@BCL11A!1.10!57.70!BCL11A;;chr1:61547894..61547968,+!p2@NFIA!1.10!33.60!NFIA;;chr13:72441074..72441172,-!p2@DACH1!1.10!11.69!DACH1;;chr7:27192185..27192209,-!p1@HOXA3!1.10!11.69!HOXA3;;chr2:43453734..43453751,-!p1@ZFP36L2!1.09!1187.53!ZFP36L2;;chr18:19749386..19749404,+!p2@GATA6!1.09!16.07!GATA6;;chr2:19558373..19558392,-!p1@OSR1!1.08!30.67!OSR1;;chr3:69915385..69915438,+!p3@MITF!1.08!10.96!MITF;;chr8:25902876..25902936,-!p1@EBF2!1.08!10.96!EBF2;;chr20:22564895..22564910,-!p1@FOXA2!1.08!10.96!FOXA2;;chr8:60031682..60031710,-!p2@TOX!1.07!17.53!TOX;;chr8:60031619..60031676,-!p1@TOX!1.06!22.64!TOX;;chr15:37390850..37390909,-!p3@MEIS2!1.05!20.45!MEIS2;;chr1:10856639..10856662,-!p2@CASZ1!1.05!10.22!CASZ1;;chr4:174450089..174450153,-!p2@HAND2!1.05!10.22!HAND2;;chr5:134369905..134369972,-!p1@PITX1!1.04!15.34!PITX1;;chr3:42947600..42947680,+!p1@ZNF662!1.04!14.61!ZNF662;;chr15:96873921..96873946,+!p1@NR2F2!1.03!275.34!NR2F2;;chr6:144329384..144329405,-!p1@PLAGL1!1.02!111.01!PLAGL1;;chr3:24536253..24536328,-!p1@THRB!1.02!18.26!THRB;;chr8:55370487..55370503,+!p1@SOX17!1.02!9.49!SOX17;;chr3:12329397..12329433,+!p2@PPARG!1.01!21.18!PPARG;;chr3:126076242..126076257,-!p1@KLF15!1.01!11.69!KLF15;;chr4:38665810..38665827,+!p1@KLF3!1.00!134.38!KLF3;;chr6:91006575..91006602,-!p2@BACH2!0.99!13.15!BACH2;;chr22:38380543..38380569,-!p1@SOX10!0.99!8.76!SOX10;;chr1:209979411..209979433,-!p2@IRF6!0.99!8.76!IRF6;;chr13:73633131..73633149,+!p1@KLF5!0.98!94.21!KLF5;;chr14:33408072..33408114,+!p2@NPAS3!0.98!10.22!NPAS3;;chr16:79634624..79634642,-!p1@MAF!0.96!32.87!MAF;;chr17:1959369..1959388,+!p2@HIC1!0.96!21.91!HIC1;;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|expression_enrichment_score=chr19:46801639..46801699,+!p1@HIF3A!2.33!211.07!HIF3A;;chr6:1312325..1312340,+!p1@FOXQ1!2.30!319.16!FOXQ1;;chr4:174451370..174451387,-!p1@HAND2!2.13!132.92!HAND2;;chr16:86544113..86544145,+!p1@FOXF1!2.00!120.51!FOXF1;;chr1:201979703..201979721,+!p2@ELF3!1.95!88.37!ELF3;;chr11:61520075..61520136,+!p1@C11orf9!1.94!176.01!C11orf9;;chr1:201979743..201979762,+!p1@ELF3!1.85!70.11!ELF3;;chr18:19749541..19749557,+!p1@GATA6!1.83!201.57!GATA6;;chr19:46800289..46800327,+!p2@HIF3A!1.76!56.24!HIF3A;;chr11:113930425..113930471,+!p1@ZBTB16!1.75!78.15!ZBTB16;;chr2:122042770..122042785,-!p1@TFCP2L1!1.75!55.51!TFCP2L1;;chr6:134210243..134210257,+!p1@TCF21!1.72!51.12!TCF21;;chr5:50679228..50679288,+!p1@ISL1!1.70!48.93!ISL1;;chr4:174451350..174451363,-!p3@HAND2!1.69!47.47!HAND2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.68!46.74!PEG3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.67!46.01!ZBED1;;chr3:169381420..169381535,-!p1@MECOM!1.63!48.20!MECOM;;chr3:12330560..12330579,+!p1@PPARG!1.62!46.74!PPARG;;chr9:96717629..96717644,-!p1@BARX1!1.62!40.90!BARX1;;chr1:27240455..27240474,-!p1@NR0B2!1.57!35.79!NR0B2;;chr16:85932760..85932775,+!p1@IRF8!1.56!35.06!IRF8;;chr14:38064429..38064486,-!p1@FOXA1!1.53!32.87!FOXA1;;chr20:62680984..62680999,-!p1@SOX18!1.51!41.63!SOX18;;chr19:46367576..46367592,+!p1@FOXA3!1.51!31.40!FOXA3;;chr20:50179368..50179392,-!p2@NFATC2!1.47!36.52!NFATC2;;chr1:216896780..216896800,-!p2@ESRRG!1.47!28.48!ESRRG;;chr11:34642612..34642646,+!p1@EHF!1.46!27.75!EHF;;chr18:45663490..45663528,-!p2@ZBTB7C!1.45!27.02!ZBTB7C;;chr19:54041669..54041697,+!p2@ZNF331!1.44!26.29!ZNF331;;chr1:40105299..40105326,-!p1@HEYL!1.44!26.29!HEYL;;chr18:19749517..19749531,+!p3@GATA6!1.42!44.55!GATA6;;chr8:106330656..106330684,+!p1@ZFPM2!1.40!62.08!ZFPM2;;chr1:61548225..61548299,+!p1@NFIA!1.38!292.86!NFIA;;chr13:72441315..72441454,-!p1@DACH1!1.37!43.82!DACH1;;chr6:34524093..34524135,-!p1@SPDEF!1.33!20.45!SPDEF;;chr11:113930401..113930422,+!p3@ZBTB16!1.32!19.72!ZBTB16;;chr15:57511609..57511651,+!p2@TCF12!1.30!31.40!TCF12;;chr2:157189180..157189290,-!p1@NR4A2!1.29!93.48!NR4A2;;chr6:1389789..1389821,+!p1@FOXF2!1.29!25.56!FOXF2;;chr19:46806868..46806883,+!p3@HIF3A!1.28!18.26!HIF3A;;chr20:42984330..42984364,+!p2@HNF4A!1.28!18.26!HNF4A;;chr8:11561684..11561751,+!p1@GATA4!1.27!17.53!GATA4;;chr1:209979467..209979494,-!p1@IRF6!1.25!18.99!IRF6;;chr20:50159198..50159299,-!p1@NFATC2!1.24!24.10!NFATC2;;chr8:102504651..102504683,+!p1@GRHL2!1.23!16.07!GRHL2;;chr15:96873984..96873999,+!p3@NR2F2!1.22!112.47!NR2F2;;chr1:214161272..214161322,+!p1@PROX1!1.21!21.18!PROX1;;chr1:151804244..151804310,-!p1@RORC!1.21!15.34!RORC;;chr19:54058073..54058088,+!p1@ZNF331!1.19!14.61!ZNF331;;chr12:52445218..52445237,+!p1@NR4A1!1.18!176.74!NR4A1;;chr2:66662281..66662308,+!p1@MEIS1!1.17!47.47!MEIS1;;chr9:14314131..14314147,-!p2@NFIB!1.15!72.30!NFIB;;chr3:126076264..126076305,-!p2@KLF15!1.15!18.26!KLF15;;chr1:216896752..216896778,-!p1@ESRRG!1.15!13.15!ESRRG;;chr19:16435625..16435682,+!p1@KLF2!1.13!396.57!KLF2;;chrX:106960285..106960299,-!p1@TSC22D3!1.13!329.38!TSC22D3;;chr11:46299199..46299233,+!p1@CREB3L1!1.12!62.81!CREB3L1;;chr5:158526917..158526932,-!p1@EBF1!1.12!30.67!EBF1;;chrX:131623044..131623089,-!p1@MBNL3!1.11!49.66!MBNL3;;chr7:113726357..113726443,+!p1@FOXP2!1.11!20.45!FOXP2;;chr1:164528687..164528711,+!p6@PBX1!1.11!13.88!PBX1;;chr2:60780753..60780800,-!p1@BCL11A!1.10!57.70!BCL11A;;chr1:61547894..61547968,+!p2@NFIA!1.10!33.60!NFIA;;chr13:72441074..72441172,-!p2@DACH1!1.10!11.69!DACH1;;chr7:27192185..27192209,-!p1@HOXA3!1.10!11.69!HOXA3;;chr2:43453734..43453751,-!p1@ZFP36L2!1.09!1187.53!ZFP36L2;;chr18:19749386..19749404,+!p2@GATA6!1.09!16.07!GATA6;;chr2:19558373..19558392,-!p1@OSR1!1.08!30.67!OSR1;;chr3:69915385..69915438,+!p3@MITF!1.08!10.96!MITF;;chr8:25902876..25902936,-!p1@EBF2!1.08!10.96!EBF2;;chr20:22564895..22564910,-!p1@FOXA2!1.08!10.96!FOXA2;;chr8:60031682..60031710,-!p2@TOX!1.07!17.53!TOX;;chr8:60031619..60031676,-!p1@TOX!1.06!22.64!TOX;;chr15:37390850..37390909,-!p3@MEIS2!1.05!20.45!MEIS2;;chr1:10856639..10856662,-!p2@CASZ1!1.05!10.22!CASZ1;;chr4:174450089..174450153,-!p2@HAND2!1.05!10.22!HAND2;;chr5:134369905..134369972,-!p1@PITX1!1.04!15.34!PITX1;;chr3:42947600..42947680,+!p1@ZNF662!1.04!14.61!ZNF662;;chr15:96873921..96873946,+!p1@NR2F2!1.03!275.34!NR2F2;;chr6:144329384..144329405,-!p1@PLAGL1!1.02!111.01!PLAGL1;;chr3:24536253..24536328,-!p1@THRB!1.02!18.26!THRB;;chr8:55370487..55370503,+!p1@SOX17!1.02!9.49!SOX17;;chr3:12329397..12329433,+!p2@PPARG!1.01!21.18!PPARG;;chr3:126076242..126076257,-!p1@KLF15!1.01!11.69!KLF15;;chr4:38665810..38665827,+!p1@KLF3!1.00!134.38!KLF3;;chr6:91006575..91006602,-!p2@BACH2!0.99!13.15!BACH2;;chr22:38380543..38380569,-!p1@SOX10!0.99!8.76!SOX10;;chr1:209979411..209979433,-!p2@IRF6!0.99!8.76!IRF6;;chr13:73633131..73633149,+!p1@KLF5!0.98!94.21!KLF5;;chr14:33408072..33408114,+!p2@NPAS3!0.98!10.22!NPAS3;;chr16:79634624..79634642,-!p1@MAF!0.96!32.87!MAF;;chr17:1959369..1959388,+!p2@HIC1!0.96!21.91!HIC1;;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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005409
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 36: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/stomach%252c%2520fetal%252c%2520donor1.CNhs11771.10062-101H8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/stomach%252c%2520fetal%252c%2520donor1.CNhs11771.10062-101H8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/stomach%252c%2520fetal%252c%2520donor1.CNhs11771.10062-101H8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/stomach%252c%2520fetal%252c%2520donor1.CNhs11771.10062-101H8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/stomach%252c%2520fetal%252c%2520donor1.CNhs11771.10062-101H8.hg38.nobarcode.ctss.bed.gz
|id=FF:10062-101H8
|id=FF:10062-101H8
|is_a=EFO:0002091;;FF:0010062
|is_a=EFO:0002091;;FF:0010062
|is_obsolete=
|is_obsolete=
|library_id=CNhs11771
|library_id_phase_based=2:CNhs11771
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10062
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10062
|name=stomach, fetal, donor1
|name=stomach, fetal, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 44: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11771,LSID820,release009,COMPLETED
|profile_hcage=CNhs11771,LSID820,release009,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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|rna_box=101
|rna_catalog_number=Cat:RtHFN: Stomach
|rna_catalog_number=Cat:RtHFN: Stomach
Line 59: Line 79:
|rna_weight_ug=50
|rna_weight_ug=50
|sample_age=
|sample_age=
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_line=
Line 80: Line 101:
|top_motifs=MYBL2:2.73849795374;DBP:2.38623523693;FOX{F1,F2,J1}:2.33468603542;T:2.25284425666;TFAP2{A,C}:2.18210176828;HIC1:2.18141480669;MED-1{core}:2.08962897935;MTE{core}:2.0340927454;EGR1..3:1.98918770932;GATA6:1.96492213348;TOPORS:1.95122871618;TFAP2B:1.91384868466;NR3C1:1.8703314305;MAZ:1.81982264041;HOX{A6,A7,B6,B7}:1.81206894545;HNF1A:1.77980475167;SRF:1.74808734561;MTF1:1.69779418917;TBP:1.63677068723;FOX{D1,D2}:1.61248358619;FOXA2:1.60213860523;BREu{core}:1.54667533556;SP1:1.48667542612;GLI1..3:1.48571368477;FOXL1:1.4332052054;XCPE1{core}:1.35955811951;SNAI1..3:1.31891629359;NKX2-3_NKX2-5:1.30536281301;TFCP2:1.29712562489;PATZ1:1.26588944786;MYFfamily:1.20394142643;PAX6:1.15727095732;FOXP1:1.1202088054;SPZ1:1.1006699292;HNF4A_NR2F1,2:1.10024113881;ATF6:1.05500134781;NR5A1,2:1.05187793533;PITX1..3:1.01991640763;NKX2-1,4:1.01300382873;MZF1:1.00628580798;ZNF148:0.991272148785;AR:0.976390738493;TFAP4:0.968677921371;ZEB1:0.941799135607;IKZF2:0.872526957987;LMO2:0.858215128336;CDC5L:0.816469945669;GTF2I:0.814035786038;HMGA1,2:0.810885993855;TLX1..3_NFIC{dimer}:0.805906723697;POU5F1:0.803447309453;NKX3-1:0.794909200309;RBPJ:0.77867985479;RREB1:0.772513141489;NFATC1..3:0.770632960258;ADNP_IRX_SIX_ZHX:0.730927654383;PRDM1:0.727663403704;TGIF1:0.707677425411;GTF2A1,2:0.688926658907;FOXM1:0.659711483865;SOX17:0.651825245751;POU6F1:0.633594347754;NANOG:0.60894792223;ESR1:0.600768295358;NR6A1:0.593101991204;SOX5:0.573754230683;MEF2{A,B,C,D}:0.572105255018;GFI1B:0.557581855297;ATF2:0.55757741004;PAX5:0.553137365622;VSX1,2:0.539815995181;TEAD1:0.524270739161;FOXD3:0.508205735095;ZFP161:0.476482479175;TFDP1:0.471347887083;JUN:0.457691725492;IKZF1:0.427176760541;ZNF238:0.415164442112;STAT1,3:0.368124009293;ZBTB16:0.2999193463;SOX2:0.278299347342;TLX2:0.257794350242;STAT2,4,6:0.256583474708;EP300:0.249764730568;FOXN1:0.245048761784;FOXO1,3,4:0.242508065528;XBP1:0.212278184774;GZF1:0.210038648559;TBX4,5:0.183224264084;BPTF:0.165299210941;CUX2:0.155556521933;REST:0.153223715364;TAL1_TCF{3,4,12}:0.128821664862;GFI1:0.123884360872;ESRRA:0.121328665033;HAND1,2:0.118376404209;ATF5_CREB3:0.114339286151;AIRE:0.111199201795;IRF7:0.105084636419;ATF4:0.104571871401;PRRX1,2:0.0870232942107;HMX1:0.0425851326618;FOSL2:0.04169734045;NHLH1,2:0.0230900960323;PAX3,7:0.0229057997701;HIF1A:0.0205240148669;TEF:0.0198874398441;ZNF384:0.0157900696277;GATA4:0.0153874118797;LHX3,4:0.0147159700449;ETS1,2:0.0129527726242;SMAD1..7,9:0.00573668754351;POU2F1..3:0.00358362376827;ZNF423:-0.0268231494219;PBX1:-0.0332667204887;HOX{A5,B5}:-0.0353431072274;FOX{I1,J2}:-0.0383794752339;KLF4:-0.0429524395846;RXR{A,B,G}:-0.0448990297803;RFX2..5_RFXANK_RFXAP:-0.0743078711708;NR1H4:-0.0758413266756;DMAP1_NCOR{1,2}_SMARC:-0.0766134451036;RXRA_VDR{dimer}:-0.08517243979;SOX{8,9,10}:-0.0904562354376;MAFB:-0.0994225923127;RORA:-0.111815604318;IRF1,2:-0.140238999725;ZBTB6:-0.153899685988;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.169394640811;NFIL3:-0.175163279258;ALX1:-0.197507982263;LEF1_TCF7_TCF7L1,2:-0.227819257502;SPIB:-0.246791618306;bHLH_family:-0.294216548026;EBF1:-0.298226456271;MYOD1:-0.304103717929;GCM1,2:-0.30489598833;HBP1_HMGB_SSRP1_UBTF:-0.306192406636;RUNX1..3:-0.315285341459;CEBPA,B_DDIT3:-0.324165949532;FOS_FOS{B,L1}_JUN{B,D}:-0.331188340018;CREB1:-0.362665940721;STAT5{A,B}:-0.369732990621;SPI1:-0.371479624958;E2F1..5:-0.384654300001;NFKB1_REL_RELA:-0.42569729629;AHR_ARNT_ARNT2:-0.457572096098;NKX3-2:-0.47884764396;NFY{A,B,C}:-0.50419127092;POU3F1..4:-0.511719270247;RFX1:-0.513865712844;NFE2:-0.527481173686;ZNF143:-0.527667126491;BACH2:-0.528064723029;PAX2:-0.569326131814;HLF:-0.586142028752;FOXP3:-0.587084863295;PAX8:-0.594180954633;HES1:-0.60385099911;TP53:-0.61031721813;ELF1,2,4:-0.635737886664;SREBF1,2:-0.646625661678;OCT4_SOX2{dimer}:-0.653879740094;ONECUT1,2:-0.685520206407;NANOG{mouse}:-0.69050501446;FOXQ1:-0.725509383924;NRF1:-0.82082642113;EVI1:-0.875130784366;ARID5B:-0.877965388913;ZIC1..3:-0.879366829223;UFEwm:-0.896581920419;HOX{A4,D4}:-0.930364402834;PAX1,9:-0.945105944459;NFIX:-0.945661730825;POU1F1:-0.966222894531;NFE2L2:-1.01392544214;CDX1,2,4:-1.03793648756;ELK1,4_GABP{A,B1}:-1.08370648609;PDX1:-1.09106634446;ALX4:-1.09815892531;NKX2-2,8:-1.146350834;HSF1,2:-1.1719960896;NKX6-1,2:-1.22895542946;YY1:-1.23467798213;CRX:-1.28480558461;PPARG:-1.29570903633;EN1,2:-1.35642719709;MYB:-1.40299928542;HOXA9_MEIS1:-1.62665351512;PAX4:-1.79005844064;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.96280864806;NFE2L1:-2.10103319973
|top_motifs=MYBL2:2.73849795374;DBP:2.38623523693;FOX{F1,F2,J1}:2.33468603542;T:2.25284425666;TFAP2{A,C}:2.18210176828;HIC1:2.18141480669;MED-1{core}:2.08962897935;MTE{core}:2.0340927454;EGR1..3:1.98918770932;GATA6:1.96492213348;TOPORS:1.95122871618;TFAP2B:1.91384868466;NR3C1:1.8703314305;MAZ:1.81982264041;HOX{A6,A7,B6,B7}:1.81206894545;HNF1A:1.77980475167;SRF:1.74808734561;MTF1:1.69779418917;TBP:1.63677068723;FOX{D1,D2}:1.61248358619;FOXA2:1.60213860523;BREu{core}:1.54667533556;SP1:1.48667542612;GLI1..3:1.48571368477;FOXL1:1.4332052054;XCPE1{core}:1.35955811951;SNAI1..3:1.31891629359;NKX2-3_NKX2-5:1.30536281301;TFCP2:1.29712562489;PATZ1:1.26588944786;MYFfamily:1.20394142643;PAX6:1.15727095732;FOXP1:1.1202088054;SPZ1:1.1006699292;HNF4A_NR2F1,2:1.10024113881;ATF6:1.05500134781;NR5A1,2:1.05187793533;PITX1..3:1.01991640763;NKX2-1,4:1.01300382873;MZF1:1.00628580798;ZNF148:0.991272148785;AR:0.976390738493;TFAP4:0.968677921371;ZEB1:0.941799135607;IKZF2:0.872526957987;LMO2:0.858215128336;CDC5L:0.816469945669;GTF2I:0.814035786038;HMGA1,2:0.810885993855;TLX1..3_NFIC{dimer}:0.805906723697;POU5F1:0.803447309453;NKX3-1:0.794909200309;RBPJ:0.77867985479;RREB1:0.772513141489;NFATC1..3:0.770632960258;ADNP_IRX_SIX_ZHX:0.730927654383;PRDM1:0.727663403704;TGIF1:0.707677425411;GTF2A1,2:0.688926658907;FOXM1:0.659711483865;SOX17:0.651825245751;POU6F1:0.633594347754;NANOG:0.60894792223;ESR1:0.600768295358;NR6A1:0.593101991204;SOX5:0.573754230683;MEF2{A,B,C,D}:0.572105255018;GFI1B:0.557581855297;ATF2:0.55757741004;PAX5:0.553137365622;VSX1,2:0.539815995181;TEAD1:0.524270739161;FOXD3:0.508205735095;ZFP161:0.476482479175;TFDP1:0.471347887083;JUN:0.457691725492;IKZF1:0.427176760541;ZNF238:0.415164442112;STAT1,3:0.368124009293;ZBTB16:0.2999193463;SOX2:0.278299347342;TLX2:0.257794350242;STAT2,4,6:0.256583474708;EP300:0.249764730568;FOXN1:0.245048761784;FOXO1,3,4:0.242508065528;XBP1:0.212278184774;GZF1:0.210038648559;TBX4,5:0.183224264084;BPTF:0.165299210941;CUX2:0.155556521933;REST:0.153223715364;TAL1_TCF{3,4,12}:0.128821664862;GFI1:0.123884360872;ESRRA:0.121328665033;HAND1,2:0.118376404209;ATF5_CREB3:0.114339286151;AIRE:0.111199201795;IRF7:0.105084636419;ATF4:0.104571871401;PRRX1,2:0.0870232942107;HMX1:0.0425851326618;FOSL2:0.04169734045;NHLH1,2:0.0230900960323;PAX3,7:0.0229057997701;HIF1A:0.0205240148669;TEF:0.0198874398441;ZNF384:0.0157900696277;GATA4:0.0153874118797;LHX3,4:0.0147159700449;ETS1,2:0.0129527726242;SMAD1..7,9:0.00573668754351;POU2F1..3:0.00358362376827;ZNF423:-0.0268231494219;PBX1:-0.0332667204887;HOX{A5,B5}:-0.0353431072274;FOX{I1,J2}:-0.0383794752339;KLF4:-0.0429524395846;RXR{A,B,G}:-0.0448990297803;RFX2..5_RFXANK_RFXAP:-0.0743078711708;NR1H4:-0.0758413266756;DMAP1_NCOR{1,2}_SMARC:-0.0766134451036;RXRA_VDR{dimer}:-0.08517243979;SOX{8,9,10}:-0.0904562354376;MAFB:-0.0994225923127;RORA:-0.111815604318;IRF1,2:-0.140238999725;ZBTB6:-0.153899685988;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.169394640811;NFIL3:-0.175163279258;ALX1:-0.197507982263;LEF1_TCF7_TCF7L1,2:-0.227819257502;SPIB:-0.246791618306;bHLH_family:-0.294216548026;EBF1:-0.298226456271;MYOD1:-0.304103717929;GCM1,2:-0.30489598833;HBP1_HMGB_SSRP1_UBTF:-0.306192406636;RUNX1..3:-0.315285341459;CEBPA,B_DDIT3:-0.324165949532;FOS_FOS{B,L1}_JUN{B,D}:-0.331188340018;CREB1:-0.362665940721;STAT5{A,B}:-0.369732990621;SPI1:-0.371479624958;E2F1..5:-0.384654300001;NFKB1_REL_RELA:-0.42569729629;AHR_ARNT_ARNT2:-0.457572096098;NKX3-2:-0.47884764396;NFY{A,B,C}:-0.50419127092;POU3F1..4:-0.511719270247;RFX1:-0.513865712844;NFE2:-0.527481173686;ZNF143:-0.527667126491;BACH2:-0.528064723029;PAX2:-0.569326131814;HLF:-0.586142028752;FOXP3:-0.587084863295;PAX8:-0.594180954633;HES1:-0.60385099911;TP53:-0.61031721813;ELF1,2,4:-0.635737886664;SREBF1,2:-0.646625661678;OCT4_SOX2{dimer}:-0.653879740094;ONECUT1,2:-0.685520206407;NANOG{mouse}:-0.69050501446;FOXQ1:-0.725509383924;NRF1:-0.82082642113;EVI1:-0.875130784366;ARID5B:-0.877965388913;ZIC1..3:-0.879366829223;UFEwm:-0.896581920419;HOX{A4,D4}:-0.930364402834;PAX1,9:-0.945105944459;NFIX:-0.945661730825;POU1F1:-0.966222894531;NFE2L2:-1.01392544214;CDX1,2,4:-1.03793648756;ELK1,4_GABP{A,B1}:-1.08370648609;PDX1:-1.09106634446;ALX4:-1.09815892531;NKX2-2,8:-1.146350834;HSF1,2:-1.1719960896;NKX6-1,2:-1.22895542946;YY1:-1.23467798213;CRX:-1.28480558461;PPARG:-1.29570903633;EN1,2:-1.35642719709;MYB:-1.40299928542;HOXA9_MEIS1:-1.62665351512;PAX4:-1.79005844064;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.96280864806;NFE2L1:-2.10103319973
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10062-101H8;search_select_hide=table117:FF:10062-101H8
}}
}}

Latest revision as of 12:18, 3 June 2020

Name:stomach, fetal, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11771
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuestomach
dev stage40 weeks fetus
sexfemale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyBiochain
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberA805052
catalog numberCat:RtHFN: Stomach
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005331
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11771 CAGE DRX008732 DRR009604
Accession ID Hg19

Library idBAMCTSS
CNhs11771 DRZ001029 DRZ002414
Accession ID Hg38

Library idBAMCTSS
CNhs11771 DRZ012379 DRZ013764
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0144
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0991
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.238
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.504
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.159
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.125
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.241
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.211
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.238
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell1.48
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.00859
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.164
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.119
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0663
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.22
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.238
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.504
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.391
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0.238
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.391
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11771

Jaspar motifP-value
MA0002.29.99126e-4
MA0003.10.767
MA0004.10.214
MA0006.10.277
MA0007.10.733
MA0009.10.703
MA0014.10.441
MA0017.10.606
MA0018.20.172
MA0019.10.764
MA0024.10.536
MA0025.10.504
MA0027.10.948
MA0028.14.10197e-4
MA0029.10.301
MA0030.10.00528
MA0031.10.0331
MA0035.20.0469
MA0038.10.901
MA0039.20.937
MA0040.10.745
MA0041.10.995
MA0042.10.893
MA0043.10.472
MA0046.11.66668e-17
MA0047.25.08202e-7
MA0048.10.233
MA0050.10.338
MA0051.10.217
MA0052.10.00762
MA0055.10.0377
MA0057.10.793
MA0058.10.0584
MA0059.10.00594
MA0060.10.943
MA0061.10.00294
MA0062.27.74459e-6
MA0065.20.0354
MA0066.10.00244
MA0067.10.098
MA0068.10.0401
MA0069.10.531
MA0070.10.512
MA0071.10.326
MA0072.10.226
MA0073.10.447
MA0074.10.596
MA0076.11.91476e-5
MA0077.10.535
MA0078.10.64
MA0079.20.329
MA0080.20.0137
MA0081.10.00391
MA0083.16.51111e-7
MA0084.10.573
MA0087.10.211
MA0088.10.00948
MA0090.10.155
MA0091.10.337
MA0092.10.663
MA0093.10.181
MA0099.21.78894e-9
MA0100.10.0985
MA0101.10.0168
MA0102.20.625
MA0103.10.363
MA0104.20.00298
MA0105.19.60675e-8
MA0106.10.00323
MA0107.10.0236
MA0108.25.93165e-16
MA0111.10.851
MA0112.20.0111
MA0113.10.118
MA0114.10.177
MA0115.10.106
MA0116.18.7531e-5
MA0117.10.499
MA0119.10.683
MA0122.10.69
MA0124.10.742
MA0125.10.798
MA0131.10.805
MA0135.10.234
MA0136.14.94018e-4
MA0137.20.979
MA0138.20.745
MA0139.10.00878
MA0140.10.802
MA0141.10.0632
MA0142.10.0351
MA0143.10.19
MA0144.10.675
MA0145.10.835
MA0146.10.199
MA0147.10.00244
MA0148.15.14874e-4
MA0149.10.231
MA0150.14.15711e-4
MA0152.10.211
MA0153.15.39602e-9
MA0154.10.0018
MA0155.10.76
MA0156.12.46114e-4
MA0157.10.81
MA0159.10.0488
MA0160.10.203
MA0162.10.405
MA0163.12.91172e-9
MA0164.10.103
MA0258.10.171
MA0259.10.129



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11771

Novel motifP-value
10.0114
100.0421
1000.221
1010.614
1020.505
1030.0306
1040.901
1050.686
1060.875
1070.193
1080.607
1090.0316
110.0682
1100.0429
1110.0855
1120.345
1130.00194
1140.00138
1150.719
1160.745
1170.00542
1180.025
1190.642
120.581
1200.00987
1210.795
1220.834
1230.324
1240.357
1250.126
1260.66
1270.0263
1280.253
1290.246
130.0727
1300.892
1310.98
1320.0678
1330.0643
1340.454
1350.926
1360.885
1370.213
1380.974
1390.298
140.655
1400.686
1410.968
1420.515
1430.0046
1440.7
1450.7
1460.73
1470.987
1480.231
1490.231
150.0909
1500.515
1510.852
1520.65
1530.878
1540.704
1550.369
1560.917
1570.555
1580.443
1590.367
160.171
1600.209
1610.385
1620.912
1630.925
1640.0223
1650.508
1660.44
1670.124
1680.367
1690.132
170.943
180.00446
190.91
20.38
200.258
210.0757
220.527
230.601
240.0496
250.335
260.494
270.53
280.807
290.00666
30.0837
300.133
310.908
320.0704
330.113
340.364
350.0781
360.0172
370.046
380.691
390.835
40.586
400.163
410.0251
420.184
430.195
440.174
450.662
460.071
470.0349
480.117
490.296
50.326
500.485
510.817
520.17
530.646
540.765
550.377
560.548
570.28
580.397
590.298
60.321
600.784
610.836
620.202
630.657
640.368
650.968
660.175
670.0914
680.587
690.695
70.463
700.0411
710.0173
720.417
730.326
740.15
750.0089
760.0975
770.769
780.845
790.149
80.167
800.47
810.169
820.0823
830.717
840.731
850.824
860.32
870.0673
880.791
890.0535
90.797
900.0227
910.879
920.945
930.0267
940.00883
950.0382
960.885
970.314
980.2
990.427



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11771


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000945 (stomach)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010039 (food storage organ)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)
0001041 (foregut)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010062 (human stomach - fetal sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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