FF:10083-102B2: Difference between revisions

Latest revision as of 12:20, 3 June 2020

Name:	cerebellum, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs11795
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	cerebellum
dev stage	22-68 years old adult
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Clontech
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	8101369A-3
catalog number	Cat: 636643 Lot: 8101369A-3
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005358

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11795		CAGE		DRX008633		DRR009505

Accession ID Hg19

Library id		BAM		CTSS
CNhs11795		DRZ000930		DRZ002315

Accession ID Hg38

Library id		BAM		CTSS
CNhs11795		DRZ012280		DRZ013665

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.202
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.451
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.362
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0.628
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.875
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.112
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.112
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.112
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.202
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.112
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0267
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.179
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.51
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.112
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.108
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.112
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.101
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.00512
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.41
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.339
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.112
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.276
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.202
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.055
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0673
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.487
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.465
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.585
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.487
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	1.609
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.112
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.394
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.112
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.276
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.443
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11795

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00447
MA0003.1	MA0003.1	0.186
MA0004.1	MA0004.1	0.316
MA0006.1	MA0006.1	0.294
MA0007.1	MA0007.1	0.331
MA0009.1	MA0009.1	0.491
MA0014.1	MA0014.1	0.576
MA0017.1	MA0017.1	0.0052
MA0018.2	MA0018.2	0.0487
MA0019.1	MA0019.1	0.83
MA0024.1	MA0024.1	0.618
MA0025.1	MA0025.1	0.355
MA0027.1	MA0027.1	0.884
MA0028.1	MA0028.1	0.0697
MA0029.1	MA0029.1	0.115
MA0030.1	MA0030.1	0.469
MA0031.1	MA0031.1	0.952
MA0035.2	MA0035.2	0.027
MA0038.1	MA0038.1	0.369
MA0039.2	MA0039.2	0.149
MA0040.1	MA0040.1	0.928
MA0041.1	MA0041.1	0.523
MA0042.1	MA0042.1	0.892
MA0043.1	MA0043.1	0.623
MA0046.1	MA0046.1	0.0503
MA0047.2	MA0047.2	0.0048
MA0048.1	MA0048.1	0.298
MA0050.1	MA0050.1	0.00121
MA0051.1	MA0051.1	0.0128
MA0052.1	MA0052.1	0.403
MA0055.1	MA0055.1	0.0386
MA0057.1	MA0057.1	0.549
MA0058.1	MA0058.1	0.305
MA0059.1	MA0059.1	0.0735
MA0060.1	MA0060.1	0.185
MA0061.1	MA0061.1	0.00357
MA0062.2	MA0062.2	0.00169
MA0065.2	MA0065.2	0.00248
MA0066.1	MA0066.1	0.0448
MA0067.1	MA0067.1	0.483
MA0068.1	MA0068.1	0.845
MA0069.1	MA0069.1	0.966
MA0070.1	MA0070.1	0.406
MA0071.1	MA0071.1	0.209
MA0072.1	MA0072.1	0.956
MA0073.1	MA0073.1	0.268
MA0074.1	MA0074.1	0.281
MA0076.1	MA0076.1	0.0977
MA0077.1	MA0077.1	0.345
MA0078.1	MA0078.1	0.884
MA0079.2	MA0079.2	0.726
MA0080.2	MA0080.2	2.9334e-9
MA0081.1	MA0081.1	0.0382
MA0083.1	MA0083.1	0.00766
MA0084.1	MA0084.1	0.87
MA0087.1	MA0087.1	0.858
MA0088.1	MA0088.1	0.206
MA0090.1	MA0090.1	0.0772
MA0091.1	MA0091.1	0.96
MA0092.1	MA0092.1	0.359
MA0093.1	MA0093.1	0.37
MA0099.2	MA0099.2	6.25093e-20
MA0100.1	MA0100.1	0.399
MA0101.1	MA0101.1	4.27626e-4
MA0102.2	MA0102.2	0.034
MA0103.1	MA0103.1	0.684
MA0104.2	MA0104.2	0.569
MA0105.1	MA0105.1	6.62643e-4
MA0106.1	MA0106.1	0.00924
MA0107.1	MA0107.1	6.94773e-4
MA0108.2	MA0108.2	0.581
MA0111.1	MA0111.1	0.434
MA0112.2	MA0112.2	0.00219
MA0113.1	MA0113.1	0.274
MA0114.1	MA0114.1	0.00794
MA0115.1	MA0115.1	0.934
MA0116.1	MA0116.1	0.00417
MA0117.1	MA0117.1	0.786
MA0119.1	MA0119.1	0.101
MA0122.1	MA0122.1	0.368
MA0124.1	MA0124.1	0.955
MA0125.1	MA0125.1	0.386
MA0131.1	MA0131.1	0.852
MA0135.1	MA0135.1	0.0588
MA0136.1	MA0136.1	1.45606e-14
MA0137.2	MA0137.2	0.925
MA0138.2	MA0138.2	0.107
MA0139.1	MA0139.1	0.597
MA0140.1	MA0140.1	0.00246
MA0141.1	MA0141.1	0.0408
MA0142.1	MA0142.1	0.767
MA0143.1	MA0143.1	0.86
MA0144.1	MA0144.1	0.314
MA0145.1	MA0145.1	0.159
MA0146.1	MA0146.1	0.0539
MA0147.1	MA0147.1	0.396
MA0148.1	MA0148.1	0.0105
MA0149.1	MA0149.1	0.025
MA0150.1	MA0150.1	8.57841e-5
MA0152.1	MA0152.1	0.702
MA0153.1	MA0153.1	0.182
MA0154.1	MA0154.1	0.0273
MA0155.1	MA0155.1	0.407
MA0156.1	MA0156.1	1.45148e-9
MA0157.1	MA0157.1	0.467
MA0159.1	MA0159.1	0.00637
MA0160.1	MA0160.1	0.0919
MA0162.1	MA0162.1	0.133
MA0163.1	MA0163.1	1.84613e-5
MA0164.1	MA0164.1	0.952
MA0258.1	MA0258.1	0.0345
MA0259.1	MA0259.1	0.873

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11795

Novel motif	Logo	P-value
1	1	0.0783
10	10	0.0633
100	100	0.509
101	101	0.964
102	102	0.509
103	103	0.0293
104	104	0.0792
105	105	0.0893
106	106	0.0299
107	107	0.0793
108	108	0.8
109	109	0.00475
11	11	0.0196
110	110	0.0602
111	111	0.395
112	112	0.635
113	113	0.364
114	114	0.194
115	115	0.61
116	116	0.352
117	117	0.0109
118	118	0.249
119	119	0.424
12	12	0.579
120	120	0.118
121	121	0.655
122	122	0.599
123	123	0.429
124	124	0.323
125	125	0.802
126	126	0.0264
127	127	0.499
128	128	0.363
129	129	0.497
13	13	0.00157
130	130	0.0549
131	131	0.435
132	132	0.52
133	133	0.0433
134	134	0.533
135	135	0.622
136	136	0.00847
137	137	0.479
138	138	0.887
139	139	0.228
14	14	0.624
140	140	0.452
141	141	0.666
142	142	0.882
143	143	0.0313
144	144	0.99
145	145	0.23
146	146	0.336
147	147	0.916
148	148	0.0508
149	149	0.161
15	15	0.0541
150	150	0.204
151	151	0.729
152	152	0.0541
153	153	0.797
154	154	0.606
155	155	0.649
156	156	0.74
157	157	0.269
158	158	0.176
159	159	0.0204
16	16	0.0862
160	160	0.217
161	161	0.293
162	162	0.934
163	163	0.566
164	164	0.0372
165	165	0.0435
166	166	0.709
167	167	0.932
168	168	0.355
169	169	0.0239
17	17	0.0825
18	18	0.181
19	19	0.302
2	2	0.848
20	20	0.24
21	21	0.101
22	22	0.244
23	23	0.17
24	24	0.0235
25	25	0.46
26	26	6.39698e-4
27	27	0.714
28	28	0.591
29	29	0.0149
3	3	0.0373
30	30	0.977
31	31	0.997
32	32	0.115
33	33	0.045
34	34	0.613
35	35	0.784
36	36	0.152
37	37	0.0498
38	38	0.352
39	39	0.194
4	4	0.946
40	40	0.0526
41	41	0.279
42	42	0.164
43	43	0.0914
44	44	0.415
45	45	0.689
46	46	0.0617
47	47	0.0603
48	48	0.0802
49	49	0.22
5	5	0.477
50	50	0.331
51	51	0.406
52	52	0.436
53	53	0.929
54	54	0.434
55	55	0.58
56	56	0.312
57	57	0.384
58	58	0.347
59	59	0.0678
6	6	0.928
60	60	0.0419
61	61	0.0672
62	62	0.151
63	63	0.128
64	64	0.34
65	65	0.31
66	66	0.152
67	67	0.316
68	68	0.167
69	69	0.576
7	7	0.0369
70	70	0.0165
71	71	0.0089
72	72	0.225
73	73	0.0317
74	74	0.855
75	75	0.0406
76	76	0.455
77	77	0.17
78	78	0.0156
79	79	0.408
8	8	0.0467
80	80	0.137
81	81	0.575
82	82	0.73
83	83	0.027
84	84	0.786
85	85	0.213
86	86	0.225
87	87	8.05916e-4
88	88	0.85
89	89	0.318
9	9	0.316
90	90	0.184
91	91	0.783
92	92	0.429
93	93	0.611
94	94	0.145
95	95	0.0257
96	96	0.702
97	97	0.586
98	98	0.391
99	99	0.507

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11795

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010083 human cerebellum - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0002037 (cerebellum)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002680 (regional part of metencephalon)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001895 (metencephalon)
0002028 (hindbrain)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010083 (human cerebellum - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006215 (rhombic lip)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005358
+|accession_numbers=CAGE;DRX008633;DRR009505;DRZ000930;DRZ002315;DRZ012280;DRZ013665
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0002037,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002680,UBERON:0002616,UBERON:0004733,UBERON:0004732,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001895,UBERON:0002028
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:147127142..147127168,+!p1@ZIC1!2.58!382.44!ZIC1;;chr7:100065686..100065701,-!p2@TSC22D4!2.48!301.75!TSC22D4;;chr1:244214577..244214593,+!p1@ZNF238!2.39!244.12!ZNF238;;chr2:182545234..182545252,-!p1@NEUROD1!2.31!204.52!NEUROD1;;chr3:147127177..147127194,+!p2@ZIC1!2.31!203.34!ZIC1;;chr17:37764128..37764258,-!p1@NEUROD2!2.28!189.45!NEUROD2;;chr13:100634031..100634045,+!p1@ZIC2!2.14!136.84!ZIC2;;chr21:34442439..34442455,+!p1@OLIG1!2.10!124.72!OLIG1;;chr9:114287433..114287513,+!p1@ZNF483!1.95!218.41!ZNF483;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.94!86.89!PEG3;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.82!64.43!EN2;;chr13:100634004..100634025,+!p2@ZIC2!1.81!63.54!ZIC2;;chr19:13135582..13135600,+!p3@NFIX!1.80!62.06!NFIX;;chr3:22414241..22414278,-!p5@ZNF385D!1.80!61.77!ZNF385D;;chr11:31832658..31832681,-!p1@PAX6!1.75!54.97!PAX6;;chr8:106330656..106330684,+!p1@ZFPM2!1.71!128.56!ZFPM2;;chr8:106330696..106330719,+!p2@ZFPM2!1.70!61.47!ZFPM2;;chr17:53342311..53342400,+!p1@HLF!1.70!56.45!HLF;;chr8:53166899..53166914,-!p3@ST18!1.68!46.70!ST18;;chr13:100634130..100634143,+!p3@ZIC2!1.67!45.81!ZIC2;;chr3:22414187..22414230,-!p6@ZNF385D!1.66!44.63!ZNF385D;;chr21:34398234..34398250,+!p1@OLIG2!1.63!41.97!OLIG2;;chr3:147124307..147124336,-!p2@ZIC4!1.62!40.49!ZIC4;;chr11:31832610..31832639,-!p5@PAX6!1.60!38.42!PAX6;;chr2:2334997..2335053,-!p1@MYT1L!1.58!36.65!MYT1L;;chr1:244214611..244214624,+!p4@ZNF238!1.57!36.06!ZNF238;;chr14:73360799..73360817,-!p1@DPF3!1.56!117.92!DPF3;;chr7:14025855..14025890,-!p6@ETV1!1.55!34.28!ETV1;;chr17:35294075..35294102,+!p1@ENST00000559335!1.51!31.33!LHX1;;chr1:244219775..244219893,+!p2@ZNF238!1.49!40.49!ZNF238;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.49!29.85!SMARCE1;;chrY:21906594..21906622,-!p1@KDM5D!1.49!29.85!KDM5D;;chr7:73038839..73038862,-!p1@MLXIPL!1.48!29.26!MLXIPL;;chr4:57547454..57547469,-!p1@HOPX!1.47!28.67!HOPX;;chr18:22932080..22932170,-!p1@ZNF521!1.46!115.26!ZNF521;;chr19:13135386..13135435,+!p4@NFIX!1.44!26.30!NFIX;;chr21:34442540..34442560,+!p2@OLIG1!1.44!26.30!OLIG1;;chr12:26277817..26277863,-!p2@BHLHE41!1.43!35.17!BHLHE41;;chr3:114819124..114819200,-!p3@ZBTB20!1.42!57.93!ZBTB20;;chr7:14028488..14028516,-!p2@ETV1!1.42!27.78!ETV1;;chr7:14025816..14025842,-!p9@ETV1!1.41!24.83!ETV1;;chr3:147110055..147110129,-!p1@ZIC4!1.40!23.94!ZIC4;;chr1:214161272..214161322,+!p1@PROX1!1.39!32.51!PROX1;;chr19:57352109..57352153,-!p2@ZIM2!1.39!23.35!ZIM2;;chr1:2235077..2235103,+!p9@SKI!1.39!23.35!SKI;;chr20:62795799..62795819,+!p1@MYT1!1.38!22.76!MYT1;;chr2:113057415..113057477,+!p3@ZC3H6!1.37!28.96!ZC3H6;;chr17:7492684..7492778,-!p2@SOX15!1.36!45.51!SOX15;;chr11:31832862..31832884,-!p2@PAX6!1.36!21.87!PAX6;;chr3:147114260..147114290,-!p3@ZIC4!1.35!21.57!ZIC4;;chr14:21994449..21994524,-!p2@SALL2!1.34!61.18!SALL2;;chrX:136648279..136648295,+!p1@ZIC3!1.34!20.98!ZIC3;;chr7:63505799..63505904,+!p1@ZNF727!1.32!20.10!ZNF727;;chr3:181429704..181429722,+!p1@SOX2!1.32!19.80!SOX2;;chr18:22932004..22932021,-!p2@ZNF521!1.32!19.80!ZNF521;;chr7:1272500..1272513,+!p1@UNCX!1.31!19.21!UNCX;;chr3:147127329..147127341,+!p7@ZIC1!1.31!19.21!ZIC1;;chr12:106976774..106976788,+!p1@RFX4!1.31!19.21!RFX4;;chr2:73520667..73520683,-!p1@EGR4!1.30!18.92!EGR4;;chr1:61548069..61548102,+!p3@NFIA!1.29!44.63!NFIA;;chr19:38085768..38085821,+!p1@ZNF540!1.29!27.49!ZNF540;;chr19:46801639..46801699,+!p1@HIF3A!1.29!18.62!HIF3A;;chr22:38380543..38380569,-!p1@SOX10!1.28!18.03!SOX10;;chr2:182545282..182545294,-!p2@NEUROD1!1.28!18.03!NEUROD1;;chr8:65492915..65492932,+!p1@BHLHE22!1.28!18.03!BHLHE22;;chr11:61520075..61520136,+!p1@C11orf9!1.27!36.65!C11orf9;;chr10:134599649..134599653,-!p1@NKX6-2!1.27!17.44!NKX6-2;;chr10:48355030..48355090,+!p1@ZNF488!1.26!22.17!ZNF488;;chr3:141105705..141105770,+!p4@ZBTB38!1.26!20.98!ZBTB38;;chr15:31658288..31658338,+!p4@KLF13!1.26!17.14!KLF13;;chr12:54779511..54779577,-!p5@ZNF385A!1.26!17.14!ZNF385A;;chr7:14029283..14029311,-!p1@ETV1!1.25!88.96!ETV1;;chr7:14026022..14026044,-!p7@ETV1!1.25!16.85!ETV1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.25!16.85!POU3F3;;chr2:223163706..223163730,-!p1@PAX3!1.25!16.85!PAX3;;chr12:26277956..26277980,-!p1@BHLHE41!1.24!58.52!BHLHE41;;chr15:80696703..80696754,+!p1@ARNT2!1.24!21.57!ARNT2;;chr7:64342863..64342905,+!p3@ZNF273!1.24!16.55!ZNF273;;chr13:100638100..100638115,+!p4@ZIC2!1.24!16.55!ZIC2;;chr15:61521417..61521460,-!p2@RORA!1.23!35.47!RORA;;chr4:81118647..81118666,+!p1@PRDM8!1.23!21.28!PRDM8;;chr19:13135566..13135577,+!p9@NFIX!1.23!15.96!NFIX;;chr1:209979467..209979494,-!p1@IRF6!1.22!17.44!IRF6;;chr1:244219392..244219409,+!p5@ZNF238!1.22!15.66!ZNF238;;chr11:31832581..31832601,-!p7@PAX6!1.22!15.66!PAX6;;chr21:47063625..47063658,+!p1@PCBP3!1.21!65.61!PCBP3;;chr22:41763452..41763466,+!p2@TEF!1.21!15.37!TEF;;chr2:180726040..180726052,-!p2@ZNF385B!1.21!15.37!ZNF385B;;chr2:113057501..113057529,+!p4@ZC3H6!1.21!15.07!ZC3H6;;chr14:33403881..33403924,+!p1@NPAS3!1.21!15.07!NPAS3;;chr7:64342913..6434293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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001895;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002028;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002037
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006215,UBERON:0010316
 |fonse_cell_line=
@@ Line 38: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cerebellum%252c%2520adult%252c%2520pool1.CNhs11795.10083-102B2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cerebellum%252c%2520adult%252c%2520pool1.CNhs11795.10083-102B2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cerebellum%252c%2520adult%252c%2520pool1.CNhs11795.10083-102B2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/cerebellum%252c%2520adult%252c%2520pool1.CNhs11795.10083-102B2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/cerebellum%252c%2520adult%252c%2520pool1.CNhs11795.10083-102B2.hg38.nobarcode.ctss.bed.gz
 |id=FF:10083-102B2
 |is_a=EFO:0002091;;FF:0010083
 |is_obsolete=
+|library_id=CNhs11795
+|library_id_phase_based=2:CNhs11795
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10083
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10083
 |name=cerebellum, adult, pool1
 |namespace=
@@ Line 46: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11795,LSID820,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=102
@@ Line 62: / Line 79: @@
 |rna_weight_ug=10
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+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 83: / Line 101: @@
 |top_motifs=REST:3.97584738526;ZFP161:3.73957279948;FOXM1:3.4958738479;MED-1{core}:3.08410174001;CUX2:3.00645065225;GCM1,2:2.94554503402;PAX6:2.91710731762;BREu{core}:2.78817048611;EGR1..3:2.73866296413;RORA:2.73257097289;DBP:2.72416261708;ZBTB6:2.71067564138;MTF1:2.58734631582;AHR_ARNT_ARNT2:2.57571596637;SOX5:2.5668954592;TFAP2B:2.54599487886;ARID5B:2.52640167364;FOXQ1:2.44078228025;XBP1:2.43532063245;MZF1:2.41856244373;GATA4:2.39626793084;LMO2:2.35172471858;NHLH1,2:2.34469738073;KLF4:2.32573256773;ADNP_IRX_SIX_ZHX:2.32059920824;HIC1:2.23540486079;PRDM1:2.22721608387;GTF2I:2.21576578228;RREB1:2.21071745188;MYFfamily:2.18399722257;HOXA9_MEIS1:2.17724229755;MTE{core}:2.15690200186;ATF2:2.14693752989;PATZ1:1.94105335548;TEF:1.91964398893;RBPJ:1.87637571969;POU3F1..4:1.87236120452;POU6F1:1.86450524571;OCT4_SOX2{dimer}:1.85404782814;ONECUT1,2:1.84286585955;FOXP1:1.82617083841;PAX5:1.74685464696;NRF1:1.7186469712;POU5F1:1.68917921234;PAX4:1.67538835864;SOX{8,9,10}:1.63572743895;TFDP1:1.63282458991;GFI1B:1.63267356745;HMGA1,2:1.58469209697;TGIF1:1.51714345641;IKZF2:1.51149004928;ALX1:1.45037540581;NKX3-2:1.34300766028;HOX{A4,D4}:1.33679950994;JUN:1.30698906803;SMAD1..7,9:1.22512420692;NFIL3:1.21542696452;EP300:1.20660874347;NKX2-3_NKX2-5:1.19102185436;SOX2:1.1755398195;RFX1:1.1616091655;CDC5L:1.13852741888;EVI1:1.13839400595;ZNF423:1.13009532178;TOPORS:1.11349739179;YY1:1.10751786958;ZEB1:1.10431790288;MAZ:1.0942589468;FOXL1:1.09013410355;MYOD1:1.07524027597;RFX2..5_RFXANK_RFXAP:1.06162648955;STAT1,3:1.01793910672;PDX1:1.01087752192;NFIX:1.00627053668;ZNF143:0.963650085472;MYBL2:0.941189697469;FOX{I1,J2}:0.923694732369;MEF2{A,B,C,D}:0.878318957929;TFAP2{A,C}:0.868329797326;SOX17:0.844210455983;ZNF384:0.831436091996;PRRX1,2:0.829283257964;ZIC1..3:0.799909674636;GTF2A1,2:0.764928204656;NKX3-1:0.740086865319;BPTF:0.737622486627;ZBTB16:0.734942056975;MAFB:0.716551974135;CREB1:0.700606675788;FOXO1,3,4:0.633641512751;ESR1:0.629138135872;LEF1_TCF7_TCF7L1,2:0.589880786201;SP1:0.511528093745;XCPE1{core}:0.466145718431;ESRRA:0.439540571518;ATF5_CREB3:0.391120427539;SREBF1,2:0.382906592684;TLX1..3_NFIC{dimer}:0.358414716861;FOX{F1,F2,J1}:0.356084192537;UFEwm:0.350317899361;NFY{A,B,C}:0.345772559082;LHX3,4:0.342182972252;AR:0.335462086238;FOX{D1,D2}:0.332167656105;ATF6:0.323642270846;NKX2-1,4:0.318892789301;HAND1,2:0.293188977876;T:0.26947134461;PAX3,7:0.188873317208;PITX1..3:0.18223604788;TLX2:0.178118859405;ATF4:0.123103068557;PAX2:0.0998931081894;SNAI1..3:0.0740092332067;EBF1:0.0274881452256;GZF1:0.00505860848864;GFI1:-0.00345562509149;FOXA2:-0.00386031399336;NR3C1:-0.0344836211758;FOXD3:-0.0392405552009;SPZ1:-0.0514029355433;AIRE:-0.0547834133183;CRX:-0.0701680971649;FOXP3:-0.0705529135404;PAX1,9:-0.0827648035254;POU1F1:-0.144394800899;HOX{A6,A7,B6,B7}:-0.171478261746;NR5A1,2:-0.201121317311;NFE2L1:-0.272567105406;FOXN1:-0.282933396219;NANOG:-0.331813159972;PAX8:-0.350569511307;STAT5{A,B}:-0.376154974693;VSX1,2:-0.464573952529;NKX6-1,2:-0.486506011779;IRF7:-0.498906128381;HIF1A:-0.531192552913;IRF1,2:-0.543439589369;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.543696445027;HNF4A_NR2F1,2:-0.558406510571;TFAP4:-0.636199936632;NANOG{mouse}:-0.664505098089;SPI1:-0.701820300442;SPIB:-0.715927201724;DMAP1_NCOR{1,2}_SMARC:-0.736665867918;TAL1_TCF{3,4,12}:-0.757705469208;CDX1,2,4:-0.77684909239;TFCP2:-0.77790275814;NFE2L2:-0.789547436729;HNF1A:-0.815088408159;RXR{A,B,G}:-0.850427647109;ZNF238:-0.924591797371;ALX4:-0.957080657732;NFE2:-0.984588653884;IKZF1:-0.993868501396;CEBPA,B_DDIT3:-1.00786767171;E2F1..5:-1.0251408998;bHLH_family:-1.04086927475;FOSL2:-1.06758616995;NFATC1..3:-1.10130432733;GATA6:-1.10891288669;RUNX1..3:-1.12351726164;TEAD1:-1.12539313408;ETS1,2:-1.16575983636;HMX1:-1.16614448331;BACH2:-1.18582439266;NR6A1:-1.18863617234;HES1:-1.18957828044;STAT2,4,6:-1.20243420942;FOS_FOS{B,L1}_JUN{B,D}:-1.21504605611;NFKB1_REL_RELA:-1.22819666633;NR1H4:-1.2368671144;TP53:-1.26896301883;PBX1:-1.27400815906;POU2F1..3:-1.30199174696;ELK1,4_GABP{A,B1}:-1.30384623775;HLF:-1.31414235718;HBP1_HMGB_SSRP1_UBTF:-1.31807455984;RXRA_VDR{dimer}:-1.33637494616;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.38211942839;PPARG:-1.42800444541;HOX{A5,B5}:-1.52012236545;ZNF148:-1.55184506679;NKX2-2,8:-1.58027474373;TBP:-1.58056310743;HSF1,2:-1.70606488746;MYB:-1.74927195141;SRF:-1.75777497705;ELF1,2,4:-1.93013112527;EN1,2:-2.05696622851;TBX4,5:-2.09405736591;GLI1..3:-2.33932028004
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10083-102B2;search_select_hide=table117:FF:10083-102B2
 }}

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FF:10083-102B2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:20, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0