FF:10084-102B3: Difference between revisions

Latest revision as of 12:20, 3 June 2020

Name:	brain, adult, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11796
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	brain
dev stage	18 years old adult
sex	male
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Clontech
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	8101369A-4
catalog number	Cat: 636643 Lot: 8101369A-4
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005459

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11796		CAGE		DRX008625		DRR009497

Accession ID Hg19

Library id		BAM		CTSS
CNhs11796		DRZ000922		DRZ002307

Accession ID Hg38

Library id		BAM		CTSS
CNhs11796		DRZ012272		DRZ013657

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.294
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.647
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.449
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.468
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.087
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.294
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.294
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.00643
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.591
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.00414
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0774
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.782
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.294
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.468
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.294
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0902
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.468
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0.294
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.572
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.294
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.767
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.294
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.688
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.468
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11796

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00513
MA0003.1	MA0003.1	0.48
MA0004.1	MA0004.1	0.451
MA0006.1	MA0006.1	0.533
MA0007.1	MA0007.1	0.323
MA0009.1	MA0009.1	0.154
MA0014.1	MA0014.1	0.485
MA0017.1	MA0017.1	0.0563
MA0018.2	MA0018.2	0.0515
MA0019.1	MA0019.1	0.944
MA0024.1	MA0024.1	0.735
MA0025.1	MA0025.1	0.252
MA0027.1	MA0027.1	0.617
MA0028.1	MA0028.1	0.0146
MA0029.1	MA0029.1	0.143
MA0030.1	MA0030.1	0.117
MA0031.1	MA0031.1	0.97
MA0035.2	MA0035.2	0.188
MA0038.1	MA0038.1	0.158
MA0039.2	MA0039.2	0.14
MA0040.1	MA0040.1	0.315
MA0041.1	MA0041.1	0.608
MA0042.1	MA0042.1	0.854
MA0043.1	MA0043.1	0.566
MA0046.1	MA0046.1	0.141
MA0047.2	MA0047.2	0.338
MA0048.1	MA0048.1	0.0919
MA0050.1	MA0050.1	6.34201e-5
MA0051.1	MA0051.1	0.0271
MA0052.1	MA0052.1	0.207
MA0055.1	MA0055.1	0.00103
MA0057.1	MA0057.1	0.929
MA0058.1	MA0058.1	0.364
MA0059.1	MA0059.1	0.0772
MA0060.1	MA0060.1	0.577
MA0061.1	MA0061.1	0.00316
MA0062.2	MA0062.2	5.14582e-4
MA0065.2	MA0065.2	0.00785
MA0066.1	MA0066.1	0.045
MA0067.1	MA0067.1	0.779
MA0068.1	MA0068.1	0.113
MA0069.1	MA0069.1	0.454
MA0070.1	MA0070.1	0.025
MA0071.1	MA0071.1	0.11
MA0072.1	MA0072.1	0.602
MA0073.1	MA0073.1	0.563
MA0074.1	MA0074.1	0.355
MA0076.1	MA0076.1	0.0197
MA0077.1	MA0077.1	0.188
MA0078.1	MA0078.1	0.977
MA0079.2	MA0079.2	0.311
MA0080.2	MA0080.2	7.82445e-9
MA0081.1	MA0081.1	0.0135
MA0083.1	MA0083.1	0.154
MA0084.1	MA0084.1	0.291
MA0087.1	MA0087.1	0.545
MA0088.1	MA0088.1	0.133
MA0090.1	MA0090.1	0.289
MA0091.1	MA0091.1	0.597
MA0092.1	MA0092.1	0.383
MA0093.1	MA0093.1	0.455
MA0099.2	MA0099.2	1.93854e-16
MA0100.1	MA0100.1	0.135
MA0101.1	MA0101.1	1.96213e-4
MA0102.2	MA0102.2	0.0215
MA0103.1	MA0103.1	0.404
MA0104.2	MA0104.2	0.404
MA0105.1	MA0105.1	1.18176e-4
MA0106.1	MA0106.1	0.0194
MA0107.1	MA0107.1	8.80354e-4
MA0108.2	MA0108.2	0.215
MA0111.1	MA0111.1	0.454
MA0112.2	MA0112.2	0.00219
MA0113.1	MA0113.1	0.465
MA0114.1	MA0114.1	0.0444
MA0115.1	MA0115.1	0.846
MA0116.1	MA0116.1	0.00243
MA0117.1	MA0117.1	0.895
MA0119.1	MA0119.1	0.0667
MA0122.1	MA0122.1	0.473
MA0124.1	MA0124.1	0.848
MA0125.1	MA0125.1	0.173
MA0131.1	MA0131.1	0.608
MA0135.1	MA0135.1	7.78804e-4
MA0136.1	MA0136.1	3.9914e-13
MA0137.2	MA0137.2	0.177
MA0138.2	MA0138.2	0.0248
MA0139.1	MA0139.1	0.479
MA0140.1	MA0140.1	0.0107
MA0141.1	MA0141.1	0.153
MA0142.1	MA0142.1	0.704
MA0143.1	MA0143.1	0.657
MA0144.1	MA0144.1	0.323
MA0145.1	MA0145.1	0.265
MA0146.1	MA0146.1	0.0248
MA0147.1	MA0147.1	0.278
MA0148.1	MA0148.1	0.235
MA0149.1	MA0149.1	0.0112
MA0150.1	MA0150.1	6.85372e-5
MA0152.1	MA0152.1	0.561
MA0153.1	MA0153.1	0.157
MA0154.1	MA0154.1	0.0368
MA0155.1	MA0155.1	0.935
MA0156.1	MA0156.1	2.19081e-9
MA0157.1	MA0157.1	0.633
MA0159.1	MA0159.1	0.0256
MA0160.1	MA0160.1	0.0968
MA0162.1	MA0162.1	0.172
MA0163.1	MA0163.1	1.36054e-6
MA0164.1	MA0164.1	0.858
MA0258.1	MA0258.1	0.0579
MA0259.1	MA0259.1	0.602

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11796

Novel motif	Logo	P-value
1	1	0.0371
10	10	0.0171
100	100	0.35
101	101	0.866
102	102	0.669
103	103	0.0894
104	104	0.173
105	105	0.356
106	106	0.148
107	107	0.192
108	108	0.887
109	109	0.00905
11	11	0.0223
110	110	0.0273
111	111	0.158
112	112	0.443
113	113	0.535
114	114	0.106
115	115	0.654
116	116	0.382
117	117	0.00522
118	118	0.107
119	119	0.405
12	12	0.719
120	120	0.139
121	121	0.612
122	122	0.509
123	123	0.854
124	124	0.0284
125	125	0.325
126	126	0.0163
127	127	0.371
128	128	0.391
129	129	0.881
13	13	4.29961e-4
130	130	0.282
131	131	0.155
132	132	0.316
133	133	0.00461
134	134	0.605
135	135	0.265
136	136	0.00794
137	137	0.359
138	138	0.821
139	139	0.17
14	14	0.93
140	140	0.375
141	141	0.302
142	142	0.898
143	143	0.0086
144	144	0.964
145	145	0.12
146	146	0.386
147	147	0.851
148	148	0.187
149	149	0.736
15	15	0.0475
150	150	0.136
151	151	0.767
152	152	0.227
153	153	0.499
154	154	0.499
155	155	0.483
156	156	0.893
157	157	0.264
158	158	0.395
159	159	0.435
16	16	0.0675
160	160	0.269
161	161	0.188
162	162	0.889
163	163	0.738
164	164	0.0155
165	165	0.0534
166	166	0.988
167	167	0.344
168	168	0.631
169	169	0.0131
17	17	0.192
18	18	0.168
19	19	0.343
2	2	0.777
20	20	0.0709
21	21	0.0781
22	22	0.316
23	23	0.503
24	24	0.05
25	25	0.311
26	26	5.47113e-5
27	27	0.924
28	28	0.551
29	29	0.00338
3	3	0.0106
30	30	0.512
31	31	0.926
32	32	0.079
33	33	0.0473
34	34	0.962
35	35	0.565
36	36	0.121
37	37	0.0441
38	38	0.364
39	39	0.309
4	4	0.914
40	40	0.095
41	41	0.313
42	42	0.0937
43	43	0.0968
44	44	0.471
45	45	0.895
46	46	0.069
47	47	0.0878
48	48	0.0606
49	49	0.183
5	5	0.361
50	50	0.325
51	51	0.531
52	52	0.878
53	53	0.67
54	54	0.567
55	55	0.444
56	56	0.54
57	57	0.231
58	58	0.293
59	59	0.245
6	6	0.524
60	60	0.0993
61	61	0.0443
62	62	0.164
63	63	0.225
64	64	0.247
65	65	0.443
66	66	0.115
67	67	0.297
68	68	0.583
69	69	0.689
7	7	0.0267
70	70	0.0355
71	71	0.00431
72	72	0.299
73	73	0.0621
74	74	0.517
75	75	0.0201
76	76	0.244
77	77	0.432
78	78	0.00174
79	79	0.457
8	8	0.0964
80	80	0.611
81	81	0.578
82	82	0.566
83	83	0.0681
84	84	0.744
85	85	0.542
86	86	0.172
87	87	0.0191
88	88	0.892
89	89	0.63
9	9	0.461
90	90	0.0207
91	91	0.391
92	92	0.555
93	93	0.841
94	94	0.05
95	95	0.0212
96	96	0.942
97	97	0.73
98	98	0.316
99	99	0.941

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11796

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010012 human brain - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010012 (human brain - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006238 (future brain)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008517
+|DRA_sample_Accession=CAGE@SAMD00005459
-|accession_numbers=CAGE;DRX008625;DRR009497;DRZ000922;DRZ002307
+|accession_numbers=CAGE;DRX008625;DRR009497;DRZ000922;DRZ002307;DRZ012272;DRZ013657
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0000479,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.95!881.12!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.63!425.54!OLIG1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.14!136.68!PEG3;;chr21:34398234..34398250,+!p1@OLIG2!2.14!136.68!OLIG2;;chr22:38380543..38380569,-!p1@SOX10!2.08!120.20!SOX10;;chr17:53342311..53342400,+!p1@HLF!2.07!131.83!HLF;;chr9:77112244..77112262,+!p1@RORB!2.03!117.29!RORB;;chr21:34442540..34442560,+!p2@OLIG1!2.00!99.84!OLIG1;;chr11:61520075..61520136,+!p1@C11orf9!1.94!177.39!C11orf9;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.90!78.52!SEBOX;;chr4:57547454..57547469,-!p1@HOPX!1.90!77.55!HOPX;;chr1:2461692..2461710,-!p1@HES5!1.85!69.79!HES5;;chr3:181429704..181429722,+!p1@SOX2!1.83!66.88!SOX2;;chr16:1031762..1031781,+!p1@SOX8!1.83!66.88!SOX8;;chr14:29235961..29236008,+!p1@FOXG1!1.83!65.91!FOXG1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.77!58.16!POU3F3;;chr2:95963052..95963106,+!p1@KCNIP3!1.77!58.16!KCNIP3;;chr12:106976774..106976788,+!p1@RFX4!1.73!52.34!RFX4;;chrX:25034067..25034088,-!p1@ARX!1.72!51.37!ARX;;chr9:126774018..126774055,+!p1@LHX2!1.70!49.44!LHX2;;chr10:134599649..134599653,-!p1@NKX6-2!1.70!49.44!NKX6-2;;chr15:80696703..80696754,+!p1@ARNT2!1.68!61.07!ARNT2;;chr15:80733570..80733659,+!p2@ARNT2!1.66!44.59!ARNT2;;chr2:2334997..2335053,-!p1@MYT1L!1.66!44.59!MYT1L;;chr12:54779511..54779577,-!p5@ZNF385A!1.61!39.74!ZNF385A;;chr2:60781201..60781258,-!p3@BCL11A!1.59!37.80!BCL11A;;chr9:114287433..114287513,+!p1@ZNF483!1.58!93.06!ZNF483;;chr15:80735246..80735321,+!p3@ARNT2!1.58!36.83!ARNT2;;chr1:214161272..214161322,+!p1@PROX1!1.57!50.41!PROX1;;chr2:162272785..162272836,+!p1@TBR1!1.57!35.87!TBR1;;chr12:106976678..106976708,+!p2@RFX4!1.57!35.87!RFX4;;chr4:81118647..81118666,+!p1@PRDM8!1.55!45.56!PRDM8;;chr8:40755333..40755352,-!p1@ZMAT4!1.54!33.93!ZMAT4;;chr17:37764128..37764258,-!p1@NEUROD2!1.53!32.96!NEUROD2;;chr22:41763452..41763466,+!p2@TEF!1.53!32.96!TEF;;chr5:88178983..88179012,-!p1@MEF2C!1.52!239.43!MEF2C;;chr19:46801639..46801699,+!p1@HIF3A!1.52!31.99!HIF3A;;chr10:48355030..48355090,+!p1@ZNF488!1.51!39.74!ZNF488;;chr14:29234581..29234601,+!p2@FOXG1!1.49!30.05!FOXG1;;chr14:33403881..33403924,+!p1@NPAS3!1.48!29.08!NPAS3;;chr2:145277882..145277967,-!p3@ZEB2!1.43!43.62!ZEB2;;chr11:8102846..8102892,+!p1@TUB!1.42!34.90!TUB;;chr8:53322304..53322340,-!p1@ST18!1.40!24.23!ST18;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.38!23.26!POU3F3;;chr2:95963120..95963136,+!p2@KCNIP3!1.38!23.26!KCNIP3;;chr21:34442584..34442587,+!p3@OLIG1!1.38!23.26!OLIG1;;chr10:64134120..64134183,+!p1@ZNF365!1.36!26.17!ZNF365;;chrY:21906594..21906622,-!p1@KDM5D!1.35!21.33!KDM5D;;chr16:51185318..51185348,-!p2@SALL1!1.35!21.33!SALL1;;chr19:38720294..38720348,-!p1@DPF1!1.34!26.17!DPF1;;chr11:113930425..113930471,+!p1@ZBTB16!1.33!29.08!ZBTB16;;chr19:13135386..13135435,+!p4@NFIX!1.33!20.36!NFIX;;chr19:13135582..13135600,+!p3@NFIX!1.31!19.39!NFIX;;chr20:62680984..62680999,-!p1@SOX18!1.30!25.20!SOX18;;chr2:166326200..166326216,+!p1@CSRNP3!1.29!27.14!CSRNP3;;chr8:145560371..145560449,-!p1@SCRT1!1.29!18.42!SCRT1;;chr6:19837592..19837621,+!p1@ID4!1.27!105.66!ID4;;chr5:88179017..88179046,-!p2@MEF2C!1.27!69.79!MEF2C;;chr18:53070846..53070902,-!p6@TCF4!1.27!17.45!TCF4;;chr11:31832658..31832681,-!p1@PAX6!1.27!17.45!PAX6;;chr12:54785074..54785122,-!p2@ZNF385A!1.26!26.17!ZNF385A;;chr2:60780607..60780624,-!p2@BCL11A!1.24!49.44!BCL11A;;chr12:26277817..26277863,-!p2@BHLHE41!1.24!22.29!BHLHE41;;chr11:125034640..125034655,+!p1@PKNOX2!1.24!16.48!PKNOX2;;chr4:57522598..57522664,-!p3@HOPX!1.24!16.48!HOPX;;chr5:92919375..92919438,+!p6@NR2F1!1.23!17.45!NR2F1;;chr19:33793430..33793447,-!p1@CEBPA!1.22!64.95!CEBPA;;chr3:126076242..126076257,-!p1@KLF15!1.22!19.39!KLF15;;chr3:181429741..181429767,+!p2@SOX2!1.22!15.51!SOX2;;chr9:126774058..126774081,+!p3@LHX2!1.22!15.51!LHX2;;chr4:57522166..57522260,-!p2@HOPX!1.19!16.48!HOPX;;chr2:73520667..73520683,-!p1@EGR4!1.19!14.54!EGR4;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.19!14.54!SEBOX;;chr19:30863271..30863338,+!p1@ZNF536!1.19!14.54!ZNF536;;chr8:145560111..145560165,-!p2@SCRT1!1.19!14.54!SCRT1;;chr11:125034605..125034636,+!p2@PKNOX2!1.19!14.54!PKNOX2;;chr19:46800289..46800327,+!p2@HIF3A!1.19!14.54!HIF3A;;chr1:244214577..244214593,+!p1@ZNF238!1.19!14.54!ZNF238;;chr1:151032860..151032918,+!p1@MLLT11!1.16!158.00!MLLT11;;chr17:38256822..38256851,-!p1@NR1D1!1.16!105.66!NR1D1;;chr6:126070769..126070801,+!p1@HEY2!1.16!15.51!HEY2;;chr15:80696666..80696700,+!p4@ARNT2!1.16!13.57!ARNT2;;chr20:30433396..30433414,-!p1@FOXS1!1.16!13.57!FOXS1;;chr11:31839488..31839515,-!p3@PAX6!1.16!13.57!PAX6;;chr12:103351444..103351461,+!p1@ASCL1!1.16!13.57!ASCL1;;chr13:95364784..95364806,-!p1@SOX21!1.16!13.57!SOX21;;chr14:29236269..29236285,+!p3@FOXG1!1.16!13.57!FOXG1;;chrX:82763292..82763317,+!p1@POU3F4!1.16!13.57!POU3F4;;chr17:7492684..7492778,-!p2@SOX15!1.14!27.14!SOX15;;chr2:2335109..2335134,-!p2@MYT1L!1.13!12.60!MYT1L;;chr10:119302232..119302265,+!p1@EMX2!1.13!12.60!EMX2;;chr11:47400078..47400106,-!p1@SPI1!1.13!12.60!SPI1;;chr19:57352109..57352153,-!p2@ZIM2!1.13!12.60!ZIM2;;chr12:26277956..26277980,-!p1@BHLHE41!1.12!43.62!BHLHE41;;chr2:60780753..60780800,-!p1@BCL11A!1.11!58.16!BCL11A;;chr3:126076264..126076305,-!p2@KLF15!1.11!16.48!KLF15;;chr9:126773880..126773895,+!p2@LHX2!1.10!11.63!LHX2;;chr8:53322347..53322378,-!p2@ST18!1.10!11.63!ST18;;chr19:47523058..47523114,+!p1@NPAS1!1.10!11.63!NPAS1;;chr3:52001396..52001425,-!p4@PCBP4!1.09!20.36!PCBP4;;chr19:49140609..49140643,-!p1@DBP!1.08!62.04!DBP;;chr16:79634624..79634642,-!p1@MAF!1.08!43.62!MAF;;chr2:239148671..239148686,-!p1@HES6!1.08!40.71!HES6;;chr7:150974206..150974255,-!p1@SMARCD3!1.07!67.85!SMARCD3;;chr3:24536253..24536328,-!p1@THRB!1.07!20.36!THRB;;chr2:162272889..162272915,+!p2@TBR1!1.07!10.66!TBR1;;chr2:180726291..180726311,-!p1@ZNF385B!1.07!10.66!ZNF385B;;chr15:80696836..80696853,+!p7@ARNT2!1.07!10.66!ARNT2;;chr16:85932760..85932775,+!p1@IRF8!1.07!10.66!IRF8;;chr19:13135731..13135787,+!p10@NFIX!1.07!10.66!NFIX;;chr19:58545454..58545498,+!p1@ZSCAN1!1.07!10.66!ZSCAN1;;chr6:108487289..108487302,+!p1@NR2E1!1.07!10.66!NR2E1;;chr6:15401104..15401166,+!p5@JARID2!1.07!10.66!JARID2;;chr10:64134045..64134083,+!p3@ZNF365!1.07!10.66!ZNF365;;chr12:103352277..103352324,+!p2@ASCL1!1.07!10.66!ASCL1;;chr13:100634031..100634045,+!p1@ZIC2!1.07!10.66!ZIC2;;chr19:13134772..13134822,+!p2@NFIX!1.06!15.51!NFIX;;chr19:49140572..49140594,-!p2@DBP!1.05!16.48!DBP;;chr3:33482052..33482116,-!p2@UBP1!1.04!15.51!UBP1;;chr14:21994337..21994442,-!p1@SALL2!1.03!27.14!SALL2;;chr1:151032922..151032951,+!p2@MLLT11!1.03!16.48!MLLT11;;chr6:143266185..143266238,-!p2@HIVEP2!1.03!13.57!HIVEP2;;chrY:21906761..21906810,-!p2@KDM5D!1.03!9.69!KDM5D;;chr20:21494684..21494708,-!p1@NKX2-2!1.03!9.69!NKX2-2;;chr17:53344980..53345011,+!p3@HLF!1.03!9.69!HLF;;chr18:76739816..76739822,+!p1@SALL3!1.03!9.69!SALL3;;chr1:61548069..61548102,+!p3@NFIA!1.02!23.26!NFIA;;chr2:113057415..113057477,+!p3@ZC3H6!1.02!12.60!ZC3H6;;chr19:38183208..38183225,-!p1@ZNF781!1.00!11.63!ZNF781;;chrX:101186981..101187030,-!p1@ZMAT1!0.99!29.08!ZMAT1;;chr5:88179230..88179270,-!p4@MEF2C!0.99!17.45!MEF2C;;chr3:141105705..141105770,+!p4@ZBTB38!0.99!10.66!ZBTB38;;chr2:172949484..172949522,+!p1@DLX1!0.99!8.72!DLX1;;chr2:2335070..2335098,-!p4@MYT1L!0.99!8.72!MYT1L;;chr2:73144617..73144654,+!p1@EMX1!0.99!8.72!EMX1;;chr3:147127177..147127194,+!p2@ZIC1!0.99!8.72!ZIC1;;chr4:57522513..57522548,-!p4@HOPX!0.99!8.72!HOPX;;chr4:57522674..57522699,-!p5@HOPX!0.99!8.72!HOPX;;chr7:31380292..31380351,-!p1@NEUROD6!0.99!8.72!NEUROD6;;chr8:93074803..93074845,-!p1@RUNX1T1!0.99!8.72!RUNX1T1;;chr16:67198633..67198671,+!p1@HSF4!0.99!8.72!HSF4;;chr18:53068911..53068935,-!p4@TCF4!0.98!9.69!TCF4;;chr19:57183114..57183145,-!p1@ZNF835!0.98!9.69!ZNF835;;chr1:151032739..151032748,+!p6@MLLT11!0.97!10.66!MLLT11;;chr15:31618903..31618962,+!p3@KLF13!0.95!22.29!KLF13;;chr20:50159198..50159299,-!p1@NFATC2!0.95!11.63!NFATC2;;chr5:92920256..92920282,+!p7@NR2F1!0.95!9.69!NR2F1;;chr17:38219209..38219230,+!p1@THRA!0.94!104.69!THRA;;chr3:18466787..18466839,-!p1@SATB1!0.94!35.87!SATB1;;chrX:106959661..106959763,-!p4@TSC22D3!0.94!23.26!TSC22D3;;chr11:8102819..8102845,+!p3@TUB!0.94!9.69!TUB;;chr11:31832862..31832884,-!p2@PAX6!0.94!7.75!PAX6;;chr12:54778471..54778528,-!p1@ZNF385A!0.94!7.75!ZNF385A;;chr9:124991204..124991246,-!p1@LHX6!0.94!7.75!LHX6;;chr9:77112225..77112238,+!p2@RORB!0.94!7.75!RORB;;chr16:51185172..51185197,-!p1@SALL1!0.94!7.75!SALL1;;chr2:113057501..113057529,+!p4@ZC3H6!0.94!7.75!ZC3H6;;chr2:162272716..162272753,+!p3@TBR1!0.94!7.75!TBR1;;chr2:180726254..180726275,-!p4@ZNF385B!0.94!7.75!ZNF385B;;chr2:242556900..242556916,-!p6@THAP4!0.94!7.75!THAP4;;chr5:88119715..88119757,-!p11@MEF2C!0.94!7.75!MEF2C;;chr8:30890810..30890880,-!p1@PURG!0.94!7.75!PURG;;chr21:39870339..39870443,-!p1@ERG!0.94!7.75!ERG;;chr15:61521417..61521460,-!p2@RORA!0.93!17.45!RORA;;chr14:75894391..75894435,+!p2@JDP2!0.93!8.72!JDP2;;chr17:38256877..38256900,-!p2@NR1D1!0.92!24.23!NR1D1;;chr5:92919068..92919082,+!p5@NR2F1!0.92!8.72!NR2F1;;chr10:38265517..38265591,-!p1@ZNF25!0.91!29.08!ZNF25;;chr1:151032782..151032801,+!p4@MLLT11!0.91!14.54!MLLT11;;chr5:92919100..92919135,+!p3@NR2F1!0.91!8.72!NR2F1;;chr17:70117153..70117174,+!p1@SOX9!0.90!75.61!SOX9;;chr2:200323414..200323455,-!p1@SATB2!0.90!15.51!SATB2;;chr3:18486354..18486377,-!p2@SATB1!0.90!8.72!SATB1;;chr3:21792585..21792625,-!p2@ZNF385D!0.90!7.75!ZNF385D;;chr13:45010939..45011033,-!p1@TSC22D1!0.89!473.03!TSC22D1;;chr22:41777927..41777971,+!p1@TEF!0.89!60.10!TEF;;chr11:8102749..8102769,+!p2@TUB!0.89!13.57!TUB;;chr16:79634595..79634620,-!p2@MAF!0.89!12.60!MAF;;chr12:56583371..56583394,-!p2@SMARCC2!0.89!10.66!SMARCC2;;chr12:26277929..26277955,-!p3@BHLHE41!0.89!9.69!BHLHE41;;chr12:125003087..125003141,-!p4@NCOR2!0.89!8.72!NCOR2;;chr11:16629261..16629284,-!p1@SOX6!0.89!6.79!SOX6;;chr2:162273254..162273267,+!p6@TBR1!0.89!6.79!TBR1;;chr3:147127142..147127168,+!p1@ZIC1!0.89!6.79!ZIC1;;chrX:85969626..85969664,+!p1@D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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006238,UBERON:0010316
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/brain%252c%2520adult%252c%2520donor1.CNhs11796.10084-102B3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/brain%252c%2520adult%252c%2520donor1.CNhs11796.10084-102B3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/brain%252c%2520adult%252c%2520donor1.CNhs11796.10084-102B3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/brain%252c%2520adult%252c%2520donor1.CNhs11796.10084-102B3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/brain%252c%2520adult%252c%2520donor1.CNhs11796.10084-102B3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10084-102B3
 |is_a=EFO:0002091;;FF:0010012
 |is_obsolete=
 |library_id=CNhs11796
-|library_id_phase_based=1:CNhs11796
+|library_id_phase_based=2:CNhs11796
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10084
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10084
 |name=brain, adult, donor1
 |namespace=FANTOM5
@@ Line 51: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11796,LSID820,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 90: / Line 101: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10084-102B3;search_select_hide=table117:FF:10084-102B3
 }}

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FF:10084-102B3: Difference between revisions

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Latest revision as of 12:20, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0