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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008598
|DRA_sample_Accession=CAGE@SAMD00005634
|accession_numbers=CAGE;DRX008707;DRR009579;DRZ001004;DRZ002389
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005634!sRNA-Seq@SAMD00005634
|HumanCAGEScanFiles=NCig10031;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/pineal%2520gland%252c%2520adult%252c%2520donor10252.NCig10031.10160-103A7.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/pineal%2520gland%252c%2520adult%252c%2520donor10252.NCig10031.10160-103A7.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/pineal%2520gland%252c%2520adult%252c%2520donor10252.NCig10031.10160-103A7.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/pineal%2520gland%252c%2520adult%252c%2520donor10252.NCig10031.10160-103A7.hg19.GCTATA.pairs.bed.gz
|accession_numbers=CAGE;DRX008707;DRR009579;DRZ001004;DRZ002389;DRZ012354;DRZ013739
|accession_numbers_RNASeq=RNA-Seq;DRX057154;DRR062913;DRZ007989!sRNA-Seq;DRX037340;DRR041706;DRZ007348
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001905,UBERON:0001894,UBERON:0000479,UBERON:0004121,UBERON:0003296,UBERON:0010133,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0002616,UBERON:0002780,UBERON:0002784,UBERON:0002757,UBERON:0010134,UBERON:0002530,UBERON:0010317,UBERON:0005408,UBERON:0001017,UBERON:0001016,UBERON:0001890,UBERON:0000949,UBERON:0001899
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001905,UBERON:0001894,UBERON:0000479,UBERON:0004121,UBERON:0003296,UBERON:0010133,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0002616,UBERON:0002780,UBERON:0002784,UBERON:0002757,UBERON:0010134,UBERON:0002530,UBERON:0010317,UBERON:0005408,UBERON:0001017,UBERON:0001016,UBERON:0001890,UBERON:0000949,UBERON:0001899
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr1:157069590..157069607,-!p1@ETV3L!3.43!2711.79!ETV3L;;chr12:55413751..55413765,+!p1@NEUROD4!3.06!1147.74!NEUROD4;;chr19:48325184..48325211,+!p1@CRX!2.84!684.34!CRX;;chr14:57277178..57277203,-!p1@OTX2!2.75!567.65!OTX2;;chr5:134871645..134871660,-!p1@NEUROG1!2.74!544.11!NEUROG1;;chr9:77112244..77112262,+!p1@RORB!2.46!322.16!RORB;;chr2:182545234..182545252,-!p1@NEUROD1!2.32!209.50!NEUROD1;;chr12:54779511..54779577,-!p5@ZNF385A!2.29!192.35!ZNF385A;;chr13:72441315..72441454,-!p1@DACH1!2.27!355.12!DACH1;;chr1:216896752..216896778,-!p1@ESRRG!2.27!186.30!ESRRG;;chr11:122852529..122852549,-!p1@BSX!2.21!162.43!BSX;;chr3:52002194..52002250,-!p5@PCBP4!2.21!160.07!PCBP4;;chr12:55413721..55413728,+!p3@NEUROD4!2.08!119.72!NEUROD4;;chr2:166326200..166326216,+!p1@CSRNP3!2.07!168.48!CSRNP3;;chr1:157069495..157069541,-!p2@ETV3L!2.06!115.01!ETV3L;;chr12:55413694..55413703,+!p2@NEUROD4!2.05!109.96!NEUROD4;;chr8:53162037..53162058,-!p5@ST18!1.99!96.51!ST18;;chr14:57272369..57272391,-!p2@OTX2!1.98!95.17!OTX2;;chr1:157069619..157069633,-!p3@ETV3L!1.96!90.12!ETV3L;;chr5:124084493..124084524,-!p2@ZNF608!1.95!188.66!ZNF608;;chr1:10754477..10754517,-!p1@CASZ1!1.87!118.37!CASZ1;;chr19:3772220..3772236,-!p1@RAX2!1.87!72.97!RAX2;;chr1:165414325..165414369,-!p1@RXRG!1.87!72.30!RXRG;;chr14:57277098..57277116,-!p3@OTX2!1.77!58.51!OTX2;;chr7:63505799..63505904,+!p1@ZNF727!1.76!56.50!ZNF727;;chr9:114287433..114287513,+!p1@ZNF483!1.74!135.19!ZNF483;;chr17:53342311..53342400,+!p1@HLF!1.71!56.83!HLF;;chr20:62795951..62795965,+!p3@MYT1!1.71!49.77!MYT1;;chr9:139094988..139095012,-!p1@LHX3!1.71!49.77!LHX3;;chr12:26277956..26277980,-!p1@BHLHE41!1.67!159.06!BHLHE41;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.65!44.05!ZBED1;;chr12:26277817..26277863,-!p2@BHLHE41!1.64!57.50!BHLHE41;;chr8:135522475..135522486,-!p16@ZFAT!1.64!43.04!ZFAT;;chr8:53166899..53166914,-!p3@ST18!1.64!43.04!ST18;;chr2:223163706..223163730,-!p1@PAX3!1.62!41.03!PAX3;;chr15:76629123..76629151,+!p1@ISL2!1.60!42.71!ISL2;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!1.60!39.01!ZNF676;;chr7:149470641..149470694,-!p1@ZNF467!1.58!159.73!ZNF467;;chr1:40105299..40105326,-!p1@HEYL!1.58!36.99!HEYL;;chr13:72441506..72441562,-!p3@DACH1!1.58!36.65!DACH1;;chr19:38085768..38085821,+!p1@ZNF540!1.56!51.79!ZNF540;;chr1:157069555..157069569,-!p4@ETV3L!1.52!31.95!ETV3L;;chr12:24715376..24715432,-!p1@SOX5!1.49!37.33!SOX5;;chr1:216896780..216896800,-!p2@ESRRG!1.49!29.93!ESRRG;;chr12:54785074..54785122,-!p2@ZNF385A!1.48!44.05!ZNF385A;;chr16:51185318..51185348,-!p2@SALL1!1.48!29.26!SALL1;;chr1:8877692..8877732,-!p1@RERE!1.46!214.89!RERE;;chr14:58797974..58798011,+!p3@ARID4A!1.46!27.91!ARID4A;;chr16:51185489..51185501,-!p6@SALL1!1.45!27.24!SALL1;;chr16:51185573..51185593,-!p3@SALL1!1.45!27.24!SALL1;;chr19:22193731..22193751,-!p1@ZNF208!1.44!26.23!ZNF208;;chr14:57277163..57277168,-!p4@OTX2!1.44!26.23!OTX2;;chr11:122852557..122852570,-!p2@BSX!1.42!25.56!BSX;;chr1:180199393..180199426,+!p1@LHX4!1.42!25.56!LHX4;;chr16:51185172..51185197,-!p1@SALL1!1.42!25.56!SALL1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.40!50.11!ZNF395;;chr13:72441074..72441172,-!p2@DACH1!1.40!24.21!DACH1;;chr3:147127142..147127168,+!p1@ZIC1!1.40!23.88!ZIC1;;chr1:61548069..61548102,+!p3@NFIA!1.39!56.50!NFIA;;chr3:114819124..114819200,-!p3@ZBTB20!1.39!53.47!ZBTB20;;chr5:134871183..134871197,-!p3@NEUROG1!1.39!23.54!NEUROG1;;chr3:52001448..52001478,-!p2@PCBP4!1.38!310.05!PCBP4;;chr21:47063625..47063658,+!p1@PCBP3!1.38!97.86!PCBP3;;chr17:7492684..7492778,-!p2@SOX15!1.38!48.09!SOX15;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.37!22.53!SMARCE1;;chr2:95963052..95963106,+!p1@KCNIP3!1.36!21.86!KCNIP3;;chr1:10856639..10856662,-!p2@CASZ1!1.36!21.86!CASZ1;;chr5:88178983..88179012,-!p1@MEF2C!1.35!158.73!MEF2C;;chr17:38465441..38465481,+!p6@RARA!1.34!25.56!RARA;;chr15:60884706..60884743,-!p1@RORA!1.33!103.91!RORA;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.33!20.51!PEG3;;chr7:100065686..100065701,-!p2@TSC22D4!1.32!19.84!TSC22D4;;chr7:73038839..73038862,-!p1@MLXIPL!1.32!19.84!MLXIPL;;chr3:114173720..114173794,-!p6@ZBTB20!1.32!19.84!ZBTB20;;chr9:77112225..77112238,+!p2@RORB!1.31!19.50!RORB;;chr9:109625401..109625458,+!p1@ZNF462!1.30!49.43!ZNF462;;chr5:124081008..124081016,-!p28@ZNF608!1.30!19.17!ZNF608;;chr3:181429704..181429722,+!p1@SOX2!1.30!18.83!SOX2;;chr22:38380543..38380569,-!p1@SOX10!1.29!18.50!SOX10;;chr17:38256822..38256851,-!p1@NR1D1!1.28!138.21!NR1D1;;chr1:10856665..10856683,-!p4@CASZ1!1.28!18.16!CASZ1;;chr1:165414227..165414242,-!p2@RXRG!1.28!18.16!RXRG;;chr1:244219775..244219893,+!p2@ZNF238!1.27!24.21!ZNF238;;chr22:41763452..41763466,+!p2@TEF!1.27!17.82!TEF;;chr1:217262933..217262968,-!p3@ESRRG!1.27!17.49!ESRRG;;chr21:34442439..34442455,+!p1@OLIG1!1.26!17.15!OLIG1;;chr14:73360799..73360817,-!p1@DPF3!1.25!57.17!DPF3;;chr14:21994337..21994442,-!p1@SALL2!1.25!46.07!SALL2;;chr2:182545282..182545294,-!p2@NEUROD1!1.25!16.81!NEUROD1;;chr5:124084466..124084484,-!p6@ZNF608!1.25!16.81!ZNF608;;chr3:128206762..128206781,-!p2@GATA2!1.24!100.55!GATA2;;chr3:18466787..18466839,-!p1@SATB1!1.23!69.95!SATB1;;chr1:61547894..61547968,+!p2@NFIA!1.23!46.41!NFIA;;chr15:61521417..61521460,-!p2@RORA!1.23!35.31!RORA;;chr7:74072135..74072171,+!p2@GTF2I!1.22!48.09!GTF2I;;chr8:93107451..93107468,-!p2@RUNX1T1!1.22!15.47!RUNX1T1;;chr5:88179017..88179046,-!p2@MEF2C!1.21!60.53!MEF2C;;chr2:145277882..145277967,-!p3@ZEB2!1.21!25.89!ZEB2;;chr10:35484053..35484076,+!p1@CREM!1.20!36.65!CREM;;chr19:46801639..46801699,+!p1@HIF3A!1.20!14.80!HIF3A;;chr1:61548225..61548299,+!p1@NFIA!1.19!184.96!NFIA;;chr2:214016314..214016343,-!p2@IKZF2!1.19!24.21!IKZF2;;chr12:26277929..26277955,-!p3@BHLHE41!1.19!20.51!BHLHE41;;chr3:114173859..114173873,-!p15@ZBTB20!1.19!14.46!ZBTB20;;chr17:36861496..36861586,+!p1@MLLT6!1.17!133.50!MLLT6;;chr14:21994449..21994524,-!p2@SALL2!1.17!41.36!SALL2;;chr11:31832658..31832681,-!p1@PAX6!1.17!13.79!PAX6;;chr16:51185544..51185555,-!p7@SALL1!1.17!13.79!SALL1;;chr15:61521462..61521482,-!p4@RORA!1.16!13.45!RORA;;chr8:53162019..53162028,-!p12@ST18!1.16!13.45!ST18;;chr1:10856694..10856715,-!p3@CASZ1!1.16!13.45!CASZ1;;chr3:147127177..147127194,+!p2@ZIC1!1.16!13.45!ZIC1;;chr10:111987079..111987115,+!p3@MXI1!1.15!18.16!MXI1;;chr12:54785054..54785072,-!p4@ZNF385A!1.15!14.80!ZNF385A;;chr20:62796052..62796067,+!p5@MYT1!1.15!13.12!MYT1;;chr9:139096968..139096979,-!p2@LHX3!1.15!13.12!LHX3;;chr6:15246200..15246214,+!p2@JARID2!1.14!34.97!JARID2;;chr2:16080659..16080685,+!p1@MYCN!1.14!12.78!MYCN;;chr16:51185511..51185522,-!p9@SALL1!1.14!12.78!SALL1;;chr14:58798013..58798071,+!p2@ARID4A!1.14!12.78!ARID4A;;chr9:3525867..3525902,-!p3@RFX3!1.13!42.71!RFX3;;chr15:57511609..57511651,+!p2@TCF12!1.13!20.85!TCF12;;chr11:8040739..8040815,+!p4@TUB!1.13!12.44!TUB;;chr12:106976678..106976708,+!p2@RFX4!1.13!12.44!RFX4;;chr3:114477934..114477961,-!p14@ZBTB20!1.13!12.44!ZBTB20;;chr9:139095030..139095040,-!p4@LHX3!1.13!12.44!LHX3;;chr2:178128250..178128293,-!p6@NFE2L2!1.12!30.60!NFE2L2;;chr20:45142154..45142227,-!p1@ZNF334!1.12!24.55!ZNF334;;chr19:37998036..37998098,+!p2@ZNF793!1.12!15.13!ZNF793;;chr14:21562671..21562702,-!p8@ZNF219!1.12!12.11!ZNF219;;chr8:77593474..77593612,+!p1@ZFHX4!1.11!50.44!ZFHX4;;chr2:74229812..74229867,+!p1@TET3!1.11!29.93!TET3;;chr5:178368186..178368238,+!p1@ZNF454!1.11!21.52!ZNF454;;chr19:38042240..38042309,+!p2@ZNF540!1.09!17.15!ZNF540;;chr15:61521495..61521506,-!p5@RORA!1.08!11.10!RORA;;chr7:39125511..39125560,+!p1@POU6F2!1.08!11.10!POU6F2;;chr12:24102576..24102623,-!p2@SOX5!1.08!11.10!SOX5;;chr19:40562072..40562143,-!p1@ZNF780B!1.07!98.19!ZNF780B;;chr9:3525968..3526016,-!p1@RFX3!1.07!62.89!RFX3;;chr15:80696703..80696754,+!p1@ARNT2!1.07!14.46!ARNT2;;chr1:61548118..61548129,+!p9@NFIA!1.07!12.11!NFIA;;chr3:114819101..114819121,-!p7@ZBTB20!1.07!10.76!ZBTB20;;chr3:52001426..52001447,-!p3@PCBP4!1.06!29.59!PCBP4;;chr19:52391147..52391218,-!p1@ZNF577!1.05!32.28!ZNF577;;chr9:2015275..2015287,+!p8@SMARCA2!1.05!16.48!SMARCA2;;chr7:74072175..74072188,+!p6@GTF2I!1.05!14.12!GTF2I;;chrX:101186981..101187030,-!p1@ZMAT1!1.04!33.29!ZMAT1;;chr11:63684602..63684664,-!p1@RCOR2!1.04!19.84!RCOR2;;chr11:47400078..47400106,-!p1@SPI1!1.04!10.09!SPI1;;chr14:21562648..21562658,-!p22@ZNF219!1.04!10.09!ZNF219;;chr16:51185149..51185160,-!p5@SALL1!1.04!10.09!SALL1;;chr17:37764128..37764258,-!p1@NEUROD2!1.04!10.09!NEUROD2;;chr3:114866084..114866118,-!p2@ZBTB20!1.03!35.98!ZBTB20;;chr1:8877735..8877760,-!p8@RERE!1.03!26.23!RERE;;chr1:164528687..164528711,+!p6@PBX1!1.03!11.43!PBX1;;chrX:118739835..118739862,-!p1@NKRF!1.03!10.76!NKRF;;chr9:77230443..77230455,+!p6@RORB!1.03!9.75!RORB;;chr19:46800289..46800327,+!p2@HIF3A!1.03!9.75!HIF3A;;chr1:165414259..165414273,-!p6@RXRG!1.03!9.75!RXRG;;chr4:149363662..149363688,-!p6@NR3C2!1.03!9.75!NR3C2;;chr2:178128199..178128245,-!p3@NFE2L2!1.02!51.45!NFE2L2;;chr19:38183208..38183225,-!p1@ZNF781!1.02!12.11!ZNF781;;chr8:93115584..93115642,-!p5@RUNX1T1!1.02!9.42!RUNX1T1;;chr18:52989031..52989079,-!p2@TCF4!1.01!22.19!TCF4;;chr14:75894391..75894435,+!p2@JDP2!1.01!10.76!JDP2;;chr17:40897043..40897087,-!p1@EZH1!1.00!81.04!EZH1;;chr19:37096139..37096170,-!p2@ZNF529!1.00!25.56!ZNF529;;chr3:44626446..44626477,+!p1@ZNF660!1.00!16.48!ZNF660;;chr17:38465413..38465438,+!p5@RARA!1.00!14.46!RARA;;chr16:67197654..67197716,+!p3@HSF4!1.00!9.08!HSF4;;chr2:182545296..182545307,-!p3@NEUROD1!1.00!9.08!NEUROD1;;chr2:214016254..214016282,-!p7@IKZF2!1.00!9.08!IKZF2;;chr3:187463179..187463201,-!p2@BCL6!0.99!36.65!BCL6;;chr17:36861675..36861697,+!p3@MLLT6!0.99!20.85!MLLT6;;chr10:70320074..70320106,+!p1@TET1!0.99!17.82!TET1;;chr3:42947600..42947680,+!p1@ZNF662!0.99!12.78!ZNF662;;chr3:114819047..114819069,-!p16@ZBTB20!0.99!8.74!ZBTB20;;chrX:118739782..118739829,-!p2@NKRF!0.99!8.74!NKRF;;chr1:216896801..216896812,-!p5@ESRRG!0.99!8.74!ESRRG;;chr1:217262969..217262995,-!p7@ESRRG!0.99!8.74!ESRRG;;chr19:49140609..49140643,-!p1@DBP!0.98!49.43!DBP;;chr4:146859927..146860055,-!p1@ZNF827!0.97!51.45!ZNF827;;chr19:37096194..37096235,+!p1@ZNF382!0.97!27.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|expression_enrichment_score=chr1:157069590..157069607,-!p1@ETV3L!3.43!2711.79!ETV3L;;chr12:55413751..55413765,+!p1@NEUROD4!3.06!1147.74!NEUROD4;;chr19:48325184..48325211,+!p1@CRX!2.84!684.34!CRX;;chr14:57277178..57277203,-!p1@OTX2!2.75!567.65!OTX2;;chr5:134871645..134871660,-!p1@NEUROG1!2.74!544.11!NEUROG1;;chr9:77112244..77112262,+!p1@RORB!2.46!322.16!RORB;;chr2:182545234..182545252,-!p1@NEUROD1!2.32!209.50!NEUROD1;;chr12:54779511..54779577,-!p5@ZNF385A!2.29!192.35!ZNF385A;;chr13:72441315..72441454,-!p1@DACH1!2.27!355.12!DACH1;;chr1:216896752..216896778,-!p1@ESRRG!2.27!186.30!ESRRG;;chr11:122852529..122852549,-!p1@BSX!2.21!162.43!BSX;;chr3:52002194..52002250,-!p5@PCBP4!2.21!160.07!PCBP4;;chr12:55413721..55413728,+!p3@NEUROD4!2.08!119.72!NEUROD4;;chr2:166326200..166326216,+!p1@CSRNP3!2.07!168.48!CSRNP3;;chr1:157069495..157069541,-!p2@ETV3L!2.06!115.01!ETV3L;;chr12:55413694..55413703,+!p2@NEUROD4!2.05!109.96!NEUROD4;;chr8:53162037..53162058,-!p5@ST18!1.99!96.51!ST18;;chr14:57272369..57272391,-!p2@OTX2!1.98!95.17!OTX2;;chr1:157069619..157069633,-!p3@ETV3L!1.96!90.12!ETV3L;;chr5:124084493..124084524,-!p2@ZNF608!1.95!188.66!ZNF608;;chr1:10754477..10754517,-!p1@CASZ1!1.87!118.37!CASZ1;;chr19:3772220..3772236,-!p1@RAX2!1.87!72.97!RAX2;;chr1:165414325..165414369,-!p1@RXRG!1.87!72.30!RXRG;;chr14:57277098..57277116,-!p3@OTX2!1.77!58.51!OTX2;;chr7:63505799..63505904,+!p1@ZNF727!1.76!56.50!ZNF727;;chr9:114287433..114287513,+!p1@ZNF483!1.74!135.19!ZNF483;;chr17:53342311..53342400,+!p1@HLF!1.71!56.83!HLF;;chr20:62795951..62795965,+!p3@MYT1!1.71!49.77!MYT1;;chr9:139094988..139095012,-!p1@LHX3!1.71!49.77!LHX3;;chr12:26277956..26277980,-!p1@BHLHE41!1.67!159.06!BHLHE41;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.65!44.05!ZBED1;;chr12:26277817..26277863,-!p2@BHLHE41!1.64!57.50!BHLHE41;;chr8:135522475..135522486,-!p16@ZFAT!1.64!43.04!ZFAT;;chr8:53166899..53166914,-!p3@ST18!1.64!43.04!ST18;;chr2:223163706..223163730,-!p1@PAX3!1.62!41.03!PAX3;;chr15:76629123..76629151,+!p1@ISL2!1.60!42.71!ISL2;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!1.60!39.01!ZNF676;;chr7:149470641..149470694,-!p1@ZNF467!1.58!159.73!ZNF467;;chr1:40105299..40105326,-!p1@HEYL!1.58!36.99!HEYL;;chr13:72441506..72441562,-!p3@DACH1!1.58!36.65!DACH1;;chr19:38085768..38085821,+!p1@ZNF540!1.56!51.79!ZNF540;;chr1:157069555..157069569,-!p4@ETV3L!1.52!31.95!ETV3L;;chr12:24715376..24715432,-!p1@SOX5!1.49!37.33!SOX5;;chr1:216896780..216896800,-!p2@ESRRG!1.49!29.93!ESRRG;;chr12:54785074..54785122,-!p2@ZNF385A!1.48!44.05!ZNF385A;;chr16:51185318..51185348,-!p2@SALL1!1.48!29.26!SALL1;;chr1:8877692..8877732,-!p1@RERE!1.46!214.89!RERE;;chr14:58797974..58798011,+!p3@ARID4A!1.46!27.91!ARID4A;;chr16:51185489..51185501,-!p6@SALL1!1.45!27.24!SALL1;;chr16:51185573..51185593,-!p3@SALL1!1.45!27.24!SALL1;;chr19:22193731..22193751,-!p1@ZNF208!1.44!26.23!ZNF208;;chr14:57277163..57277168,-!p4@OTX2!1.44!26.23!OTX2;;chr11:122852557..122852570,-!p2@BSX!1.42!25.56!BSX;;chr1:180199393..180199426,+!p1@LHX4!1.42!25.56!LHX4;;chr16:51185172..51185197,-!p1@SALL1!1.42!25.56!SALL1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.40!50.11!ZNF395;;chr13:72441074..72441172,-!p2@DACH1!1.40!24.21!DACH1;;chr3:147127142..147127168,+!p1@ZIC1!1.40!23.88!ZIC1;;chr1:61548069..61548102,+!p3@NFIA!1.39!56.50!NFIA;;chr3:114819124..114819200,-!p3@ZBTB20!1.39!53.47!ZBTB20;;chr5:134871183..134871197,-!p3@NEUROG1!1.39!23.54!NEUROG1;;chr3:52001448..52001478,-!p2@PCBP4!1.38!310.05!PCBP4;;chr21:47063625..47063658,+!p1@PCBP3!1.38!97.86!PCBP3;;chr17:7492684..7492778,-!p2@SOX15!1.38!48.09!SOX15;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.37!22.53!SMARCE1;;chr2:95963052..95963106,+!p1@KCNIP3!1.36!21.86!KCNIP3;;chr1:10856639..10856662,-!p2@CASZ1!1.36!21.86!CASZ1;;chr5:88178983..88179012,-!p1@MEF2C!1.35!158.73!MEF2C;;chr17:38465441..38465481,+!p6@RARA!1.34!25.56!RARA;;chr15:60884706..60884743,-!p1@RORA!1.33!103.91!RORA;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.33!20.51!PEG3;;chr7:100065686..100065701,-!p2@TSC22D4!1.32!19.84!TSC22D4;;chr7:73038839..73038862,-!p1@MLXIPL!1.32!19.84!MLXIPL;;chr3:114173720..114173794,-!p6@ZBTB20!1.32!19.84!ZBTB20;;chr9:77112225..77112238,+!p2@RORB!1.31!19.50!RORB;;chr9:109625401..109625458,+!p1@ZNF462!1.30!49.43!ZNF462;;chr5:124081008..124081016,-!p28@ZNF608!1.30!19.17!ZNF608;;chr3:181429704..181429722,+!p1@SOX2!1.30!18.83!SOX2;;chr22:38380543..38380569,-!p1@SOX10!1.29!18.50!SOX10;;chr17:38256822..38256851,-!p1@NR1D1!1.28!138.21!NR1D1;;chr1:10856665..10856683,-!p4@CASZ1!1.28!18.16!CASZ1;;chr1:165414227..165414242,-!p2@RXRG!1.28!18.16!RXRG;;chr1:244219775..244219893,+!p2@ZNF238!1.27!24.21!ZNF238;;chr22:41763452..41763466,+!p2@TEF!1.27!17.82!TEF;;chr1:217262933..217262968,-!p3@ESRRG!1.27!17.49!ESRRG;;chr21:34442439..34442455,+!p1@OLIG1!1.26!17.15!OLIG1;;chr14:73360799..73360817,-!p1@DPF3!1.25!57.17!DPF3;;chr14:21994337..21994442,-!p1@SALL2!1.25!46.07!SALL2;;chr2:182545282..182545294,-!p2@NEUROD1!1.25!16.81!NEUROD1;;chr5:124084466..124084484,-!p6@ZNF608!1.25!16.81!ZNF608;;chr3:128206762..128206781,-!p2@GATA2!1.24!100.55!GATA2;;chr3:18466787..18466839,-!p1@SATB1!1.23!69.95!SATB1;;chr1:61547894..61547968,+!p2@NFIA!1.23!46.41!NFIA;;chr15:61521417..61521460,-!p2@RORA!1.23!35.31!RORA;;chr7:74072135..74072171,+!p2@GTF2I!1.22!48.09!GTF2I;;chr8:93107451..93107468,-!p2@RUNX1T1!1.22!15.47!RUNX1T1;;chr5:88179017..88179046,-!p2@MEF2C!1.21!60.53!MEF2C;;chr2:145277882..145277967,-!p3@ZEB2!1.21!25.89!ZEB2;;chr10:35484053..35484076,+!p1@CREM!1.20!36.65!CREM;;chr19:46801639..46801699,+!p1@HIF3A!1.20!14.80!HIF3A;;chr1:61548225..61548299,+!p1@NFIA!1.19!184.96!NFIA;;chr2:214016314..214016343,-!p2@IKZF2!1.19!24.21!IKZF2;;chr12:26277929..26277955,-!p3@BHLHE41!1.19!20.51!BHLHE41;;chr3:114173859..114173873,-!p15@ZBTB20!1.19!14.46!ZBTB20;;chr17:36861496..36861586,+!p1@MLLT6!1.17!133.50!MLLT6;;chr14:21994449..21994524,-!p2@SALL2!1.17!41.36!SALL2;;chr11:31832658..31832681,-!p1@PAX6!1.17!13.79!PAX6;;chr16:51185544..51185555,-!p7@SALL1!1.17!13.79!SALL1;;chr15:61521462..61521482,-!p4@RORA!1.16!13.45!RORA;;chr8:53162019..53162028,-!p12@ST18!1.16!13.45!ST18;;chr1:10856694..10856715,-!p3@CASZ1!1.16!13.45!CASZ1;;chr3:147127177..147127194,+!p2@ZIC1!1.16!13.45!ZIC1;;chr10:111987079..111987115,+!p3@MXI1!1.15!18.16!MXI1;;chr12:54785054..54785072,-!p4@ZNF385A!1.15!14.80!ZNF385A;;chr20:62796052..62796067,+!p5@MYT1!1.15!13.12!MYT1;;chr9:139096968..139096979,-!p2@LHX3!1.15!13.12!LHX3;;chr6:15246200..15246214,+!p2@JARID2!1.14!34.97!JARID2;;chr2:16080659..16080685,+!p1@MYCN!1.14!12.78!MYCN;;chr16:51185511..51185522,-!p9@SALL1!1.14!12.78!SALL1;;chr14:58798013..58798071,+!p2@ARID4A!1.14!12.78!ARID4A;;chr9:3525867..3525902,-!p3@RFX3!1.13!42.71!RFX3;;chr15:57511609..57511651,+!p2@TCF12!1.13!20.85!TCF12;;chr11:8040739..8040815,+!p4@TUB!1.13!12.44!TUB;;chr12:106976678..106976708,+!p2@RFX4!1.13!12.44!RFX4;;chr3:114477934..114477961,-!p14@ZBTB20!1.13!12.44!ZBTB20;;chr9:139095030..139095040,-!p4@LHX3!1.13!12.44!LHX3;;chr2:178128250..178128293,-!p6@NFE2L2!1.12!30.60!NFE2L2;;chr20:45142154..45142227,-!p1@ZNF334!1.12!24.55!ZNF334;;chr19:37998036..37998098,+!p2@ZNF793!1.12!15.13!ZNF793;;chr14:21562671..21562702,-!p8@ZNF219!1.12!12.11!ZNF219;;chr8:77593474..77593612,+!p1@ZFHX4!1.11!50.44!ZFHX4;;chr2:74229812..74229867,+!p1@TET3!1.11!29.93!TET3;;chr5:178368186..178368238,+!p1@ZNF454!1.11!21.52!ZNF454;;chr19:38042240..38042309,+!p2@ZNF540!1.09!17.15!ZNF540;;chr15:61521495..61521506,-!p5@RORA!1.08!11.10!RORA;;chr7:39125511..39125560,+!p1@POU6F2!1.08!11.10!POU6F2;;chr12:24102576..24102623,-!p2@SOX5!1.08!11.10!SOX5;;chr19:40562072..40562143,-!p1@ZNF780B!1.07!98.19!ZNF780B;;chr9:3525968..3526016,-!p1@RFX3!1.07!62.89!RFX3;;chr15:80696703..80696754,+!p1@ARNT2!1.07!14.46!ARNT2;;chr1:61548118..61548129,+!p9@NFIA!1.07!12.11!NFIA;;chr3:114819101..114819121,-!p7@ZBTB20!1.07!10.76!ZBTB20;;chr3:52001426..52001447,-!p3@PCBP4!1.06!29.59!PCBP4;;chr19:52391147..52391218,-!p1@ZNF577!1.05!32.28!ZNF577;;chr9:2015275..2015287,+!p8@SMARCA2!1.05!16.48!SMARCA2;;chr7:74072175..74072188,+!p6@GTF2I!1.05!14.12!GTF2I;;chrX:101186981..101187030,-!p1@ZMAT1!1.04!33.29!ZMAT1;;chr11:63684602..63684664,-!p1@RCOR2!1.04!19.84!RCOR2;;chr11:47400078..47400106,-!p1@SPI1!1.04!10.09!SPI1;;chr14:21562648..21562658,-!p22@ZNF219!1.04!10.09!ZNF219;;chr16:51185149..51185160,-!p5@SALL1!1.04!10.09!SALL1;;chr17:37764128..37764258,-!p1@NEUROD2!1.04!10.09!NEUROD2;;chr3:114866084..114866118,-!p2@ZBTB20!1.03!35.98!ZBTB20;;chr1:8877735..8877760,-!p8@RERE!1.03!26.23!RERE;;chr1:164528687..164528711,+!p6@PBX1!1.03!11.43!PBX1;;chrX:118739835..118739862,-!p1@NKRF!1.03!10.76!NKRF;;chr9:77230443..77230455,+!p6@RORB!1.03!9.75!RORB;;chr19:46800289..46800327,+!p2@HIF3A!1.03!9.75!HIF3A;;chr1:165414259..165414273,-!p6@RXRG!1.03!9.75!RXRG;;chr4:149363662..149363688,-!p6@NR3C2!1.03!9.75!NR3C2;;chr2:178128199..178128245,-!p3@NFE2L2!1.02!51.45!NFE2L2;;chr19:38183208..38183225,-!p1@ZNF781!1.02!12.11!ZNF781;;chr8:93115584..93115642,-!p5@RUNX1T1!1.02!9.42!RUNX1T1;;chr18:52989031..52989079,-!p2@TCF4!1.01!22.19!TCF4;;chr14:75894391..75894435,+!p2@JDP2!1.01!10.76!JDP2;;chr17:40897043..40897087,-!p1@EZH1!1.00!81.04!EZH1;;chr19:37096139..37096170,-!p2@ZNF529!1.00!25.56!ZNF529;;chr3:44626446..44626477,+!p1@ZNF660!1.00!16.48!ZNF660;;chr17:38465413..38465438,+!p5@RARA!1.00!14.46!RARA;;chr16:67197654..67197716,+!p3@HSF4!1.00!9.08!HSF4;;chr2:182545296..182545307,-!p3@NEUROD1!1.00!9.08!NEUROD1;;chr2:214016254..214016282,-!p7@IKZF2!1.00!9.08!IKZF2;;chr3:187463179..187463201,-!p2@BCL6!0.99!36.65!BCL6;;chr17:36861675..36861697,+!p3@MLLT6!0.99!20.85!MLLT6;;chr10:70320074..70320106,+!p1@TET1!0.99!17.82!TET1;;chr3:42947600..42947680,+!p1@ZNF662!0.99!12.78!ZNF662;;chr3:114819047..114819069,-!p16@ZBTB20!0.99!8.74!ZBTB20;;chrX:118739782..118739829,-!p2@NKRF!0.99!8.74!NKRF;;chr1:216896801..216896812,-!p5@ESRRG!0.99!8.74!ESRRG;;chr1:217262969..217262995,-!p7@ESRRG!0.99!8.74!ESRRG;;chr19:49140609..49140643,-!p1@DBP!0.98!49.43!DBP;;chr4:146859927..146860055,-!p1@ZNF827!0.97!51.45!ZNF827;;chr19:37096194..37096235,+!p1@ZNF382!0.97!27.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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001894;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001905;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010133
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
Line 40: Line 45:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pineal%2520gland%252c%2520adult%252c%2520donor10252.CNhs12228.10160-103A7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pineal%2520gland%252c%2520adult%252c%2520donor10252.CNhs12228.10160-103A7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pineal%2520gland%252c%2520adult%252c%2520donor10252.CNhs12228.10160-103A7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/pineal%2520gland%252c%2520adult%252c%2520donor10252.CNhs12228.10160-103A7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/pineal%2520gland%252c%2520adult%252c%2520donor10252.CNhs12228.10160-103A7.hg38.nobarcode.ctss.bed.gz
|id=FF:10160-103A7
|id=FF:10160-103A7
|is_a=EFO:0002091;;FF:0000002;;FF:0010160
|is_a=EFO:0002091;;FF:0000002;;FF:0010160
|is_obsolete=
|is_obsolete=
|library_id=CNhs12228
|library_id=CNhs12228
|library_ids=CNhs12228
|library_id_phase_based=2:CNhs12228
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10160
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.ACTTGA.10160
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10160
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.ACTTGA.10160
|name=pineal gland, adult, donor10252
|name=pineal gland, adult, donor10252
|namespace=FANTOM5
|namespace=FANTOM5
Line 50: Line 66:
|profile_cagescan=NCig10031,,,
|profile_cagescan=NCig10031,,,
|profile_hcage=CNhs12228,LSID852,release009,COMPLETED
|profile_hcage=CNhs12228,LSID852,release009,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10006,,,
|profile_srnaseq=SRhi10006,,,
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|sample_category=tissues
Line 89: Line 107:
|top_motifs=CRX:9.12787857941;VSX1,2:4.2317081714;RORA:3.81789648382;HOX{A6,A7,B6,B7}:3.20807561729;PRRX1,2:2.99550961012;RREB1:2.48711570646;POU6F1:2.46069801781;LHX3,4:2.40191030822;ZFP161:2.3652662914;HBP1_HMGB_SSRP1_UBTF:2.27838426062;TGIF1:2.18619958263;AHR_ARNT_ARNT2:2.12882566824;POU3F1..4:2.11162361363;GFI1:2.06936794053;BPTF:2.00838220235;NRF1:1.9833765631;GATA4:1.98169697251;FOXP3:1.9804537545;CUX2:1.97786569895;ZBTB6:1.93535392156;MED-1{core}:1.88618914133;MYFfamily:1.84849970062;PRDM1:1.83918162009;GCM1,2:1.82573719571;PATZ1:1.81068111857;CDC5L:1.80728223478;ATF2:1.76268310212;FOXM1:1.7396025513;JUN:1.71841381268;ALX1:1.68333321665;BREu{core}:1.66185186327;NKX3-2:1.59199583565;RFX2..5_RFXANK_RFXAP:1.58410283776;FOXA2:1.56388364547;FOX{D1,D2}:1.54347057596;HOX{A4,D4}:1.539620632;REST:1.52451752632;MZF1:1.48741883236;SOX2:1.47992491658;GFI1B:1.433584814;OCT4_SOX2{dimer}:1.42674955637;EGR1..3:1.40906924845;RFX1:1.40119040433;PITX1..3:1.38630478833;GTF2I:1.36617391852;MTF1:1.35734998485;KLF4:1.34397377889;STAT1,3:1.34320431765;MYOD1:1.33031160158;AR:1.31354416981;FOXP1:1.31110767141;FOXN1:1.26723232731;CREB1:1.25970738914;IKZF2:1.24483750625;NFIX:1.23842684179;NANOG:1.23483559003;ADNP_IRX_SIX_ZHX:1.23396734414;TFAP2B:1.21947374698;YY1:1.20977699967;DBP:1.16773371564;ESRRA:1.16462939928;ZNF143:1.10756776469;T:1.08742987604;ALX4:1.04887507778;MAZ:1.04217984025;SREBF1,2:1.03993772488;SOX17:1.01103167701;TLX1..3_NFIC{dimer}:0.991267154129;EP300:0.976923140847;RBPJ:0.973709436704;SMAD1..7,9:0.966712996113;NHLH1,2:0.901766096657;GATA6:0.845075684033;SOX{8,9,10}:0.812883568522;STAT5{A,B}:0.787905761224;SP1:0.769208299212;LMO2:0.747884045824;NFY{A,B,C}:0.72791060389;PAX3,7:0.726798861827;GTF2A1,2:0.72152637817;ATF5_CREB3:0.68278212654;ARID5B:0.671792284846;HSF1,2:0.654378153307;TOPORS:0.624918824931;FOXO1,3,4:0.623909223874;MEF2{A,B,C,D}:0.620014504518;HIC1:0.607251442594;ZIC1..3:0.582307306407;ZBTB16:0.577894550128;POU1F1:0.571948635028;MTE{core}:0.570846937622;NKX6-1,2:0.506423334063;TFAP2{A,C}:0.501784034417;PPARG:0.500753438306;NFIL3:0.485639760345;FOX{I1,J2}:0.473313140235;POU5F1:0.392867253959;SPZ1:0.390974104122;PAX5:0.377822044479;NKX2-3_NKX2-5:0.359894011383;NR1H4:0.2920803834;TAL1_TCF{3,4,12}:0.272367825496;NKX2-1,4:0.27081087712;ELK1,4_GABP{A,B1}:0.24329321465;ATF4:0.239472417137;ZNF384:0.225511882856;HOXA9_MEIS1:0.220955478274;PAX8:0.21275931991;PAX1,9:0.211730741847;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.183887067363;NANOG{mouse}:0.150250548923;PAX6:0.143584057885;PDX1:0.0733920805246;TEF:0.0577986685287;PAX2:0.0500043575825;EBF1:0.00350159532201;MYBL2:-0.0249447353683;IRF7:-0.0346964914181;NFATC1..3:-0.0412401473132;ZEB1:-0.041547260056;CDX1,2,4:-0.0977797633043;FOXL1:-0.100015335466;GZF1:-0.136808597751;SOX5:-0.141481202869;LEF1_TCF7_TCF7L1,2:-0.167889913571;FOXQ1:-0.18077009595;ATF6:-0.184621444168;FOX{F1,F2,J1}:-0.19176896535;HIF1A:-0.222111076275;NR3C1:-0.271247764762;IRF1,2:-0.280088907383;RXR{A,B,G}:-0.290366598597;EVI1:-0.306556568236;STAT2,4,6:-0.307025828352;FOXD3:-0.308876060911;ZNF423:-0.320153395556;HNF1A:-0.321686045723;HMGA1,2:-0.323355339069;NFE2:-0.326700908515;HAND1,2:-0.383785638433;NFE2L2:-0.386477054122;SPI1:-0.39981150724;TFDP1:-0.405889647725;NFE2L1:-0.415588915075;XCPE1{core}:-0.428024964077;TLX2:-0.434537175848;PAX4:-0.441108995024;SNAI1..3:-0.447807102256;CEBPA,B_DDIT3:-0.475002265987;ONECUT1,2:-0.479789958924;ELF1,2,4:-0.501805397536;SPIB:-0.530550743981;NR5A1,2:-0.587023969512;FOSL2:-0.58737255543;TFCP2:-0.610709770217;AIRE:-0.612633320551;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.617373143311;ETS1,2:-0.707457503963;NKX2-2,8:-0.715737336455;DMAP1_NCOR{1,2}_SMARC:-0.718789398401;PBX1:-0.746621440748;HLF:-0.74707768819;RXRA_VDR{dimer}:-0.786622583292;UFEwm:-0.801809700608;IKZF1:-0.816794732828;bHLH_family:-0.8341203639;HNF4A_NR2F1,2:-0.834145877158;NFKB1_REL_RELA:-0.850149150328;TEAD1:-0.85594967517;MAFB:-0.903129247457;MYB:-0.923437246033;HMX1:-0.962643977948;BACH2:-0.971989290533;E2F1..5:-0.974467573365;XBP1:-1.01958678949;NKX3-1:-1.02870995003;SRF:-1.04343399699;FOS_FOS{B,L1}_JUN{B,D}:-1.0703044034;TFAP4:-1.10130709454;TBX4,5:-1.14455850893;TP53:-1.14601525898;RUNX1..3:-1.18323405138;HOX{A5,B5}:-1.3559989399;POU2F1..3:-1.46880632886;TBP:-1.51066493597;ZNF238:-1.56534007582;ESR1:-1.72456455274;NR6A1:-1.84187545588;GLI1..3:-2.02948925207;EN1,2:-2.41873446105;ZNF148:-2.69695490816;HES1:-3.7343175505
|top_motifs=CRX:9.12787857941;VSX1,2:4.2317081714;RORA:3.81789648382;HOX{A6,A7,B6,B7}:3.20807561729;PRRX1,2:2.99550961012;RREB1:2.48711570646;POU6F1:2.46069801781;LHX3,4:2.40191030822;ZFP161:2.3652662914;HBP1_HMGB_SSRP1_UBTF:2.27838426062;TGIF1:2.18619958263;AHR_ARNT_ARNT2:2.12882566824;POU3F1..4:2.11162361363;GFI1:2.06936794053;BPTF:2.00838220235;NRF1:1.9833765631;GATA4:1.98169697251;FOXP3:1.9804537545;CUX2:1.97786569895;ZBTB6:1.93535392156;MED-1{core}:1.88618914133;MYFfamily:1.84849970062;PRDM1:1.83918162009;GCM1,2:1.82573719571;PATZ1:1.81068111857;CDC5L:1.80728223478;ATF2:1.76268310212;FOXM1:1.7396025513;JUN:1.71841381268;ALX1:1.68333321665;BREu{core}:1.66185186327;NKX3-2:1.59199583565;RFX2..5_RFXANK_RFXAP:1.58410283776;FOXA2:1.56388364547;FOX{D1,D2}:1.54347057596;HOX{A4,D4}:1.539620632;REST:1.52451752632;MZF1:1.48741883236;SOX2:1.47992491658;GFI1B:1.433584814;OCT4_SOX2{dimer}:1.42674955637;EGR1..3:1.40906924845;RFX1:1.40119040433;PITX1..3:1.38630478833;GTF2I:1.36617391852;MTF1:1.35734998485;KLF4:1.34397377889;STAT1,3:1.34320431765;MYOD1:1.33031160158;AR:1.31354416981;FOXP1:1.31110767141;FOXN1:1.26723232731;CREB1:1.25970738914;IKZF2:1.24483750625;NFIX:1.23842684179;NANOG:1.23483559003;ADNP_IRX_SIX_ZHX:1.23396734414;TFAP2B:1.21947374698;YY1:1.20977699967;DBP:1.16773371564;ESRRA:1.16462939928;ZNF143:1.10756776469;T:1.08742987604;ALX4:1.04887507778;MAZ:1.04217984025;SREBF1,2:1.03993772488;SOX17:1.01103167701;TLX1..3_NFIC{dimer}:0.991267154129;EP300:0.976923140847;RBPJ:0.973709436704;SMAD1..7,9:0.966712996113;NHLH1,2:0.901766096657;GATA6:0.845075684033;SOX{8,9,10}:0.812883568522;STAT5{A,B}:0.787905761224;SP1:0.769208299212;LMO2:0.747884045824;NFY{A,B,C}:0.72791060389;PAX3,7:0.726798861827;GTF2A1,2:0.72152637817;ATF5_CREB3:0.68278212654;ARID5B:0.671792284846;HSF1,2:0.654378153307;TOPORS:0.624918824931;FOXO1,3,4:0.623909223874;MEF2{A,B,C,D}:0.620014504518;HIC1:0.607251442594;ZIC1..3:0.582307306407;ZBTB16:0.577894550128;POU1F1:0.571948635028;MTE{core}:0.570846937622;NKX6-1,2:0.506423334063;TFAP2{A,C}:0.501784034417;PPARG:0.500753438306;NFIL3:0.485639760345;FOX{I1,J2}:0.473313140235;POU5F1:0.392867253959;SPZ1:0.390974104122;PAX5:0.377822044479;NKX2-3_NKX2-5:0.359894011383;NR1H4:0.2920803834;TAL1_TCF{3,4,12}:0.272367825496;NKX2-1,4:0.27081087712;ELK1,4_GABP{A,B1}:0.24329321465;ATF4:0.239472417137;ZNF384:0.225511882856;HOXA9_MEIS1:0.220955478274;PAX8:0.21275931991;PAX1,9:0.211730741847;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.183887067363;NANOG{mouse}:0.150250548923;PAX6:0.143584057885;PDX1:0.0733920805246;TEF:0.0577986685287;PAX2:0.0500043575825;EBF1:0.00350159532201;MYBL2:-0.0249447353683;IRF7:-0.0346964914181;NFATC1..3:-0.0412401473132;ZEB1:-0.041547260056;CDX1,2,4:-0.0977797633043;FOXL1:-0.100015335466;GZF1:-0.136808597751;SOX5:-0.141481202869;LEF1_TCF7_TCF7L1,2:-0.167889913571;FOXQ1:-0.18077009595;ATF6:-0.184621444168;FOX{F1,F2,J1}:-0.19176896535;HIF1A:-0.222111076275;NR3C1:-0.271247764762;IRF1,2:-0.280088907383;RXR{A,B,G}:-0.290366598597;EVI1:-0.306556568236;STAT2,4,6:-0.307025828352;FOXD3:-0.308876060911;ZNF423:-0.320153395556;HNF1A:-0.321686045723;HMGA1,2:-0.323355339069;NFE2:-0.326700908515;HAND1,2:-0.383785638433;NFE2L2:-0.386477054122;SPI1:-0.39981150724;TFDP1:-0.405889647725;NFE2L1:-0.415588915075;XCPE1{core}:-0.428024964077;TLX2:-0.434537175848;PAX4:-0.441108995024;SNAI1..3:-0.447807102256;CEBPA,B_DDIT3:-0.475002265987;ONECUT1,2:-0.479789958924;ELF1,2,4:-0.501805397536;SPIB:-0.530550743981;NR5A1,2:-0.587023969512;FOSL2:-0.58737255543;TFCP2:-0.610709770217;AIRE:-0.612633320551;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.617373143311;ETS1,2:-0.707457503963;NKX2-2,8:-0.715737336455;DMAP1_NCOR{1,2}_SMARC:-0.718789398401;PBX1:-0.746621440748;HLF:-0.74707768819;RXRA_VDR{dimer}:-0.786622583292;UFEwm:-0.801809700608;IKZF1:-0.816794732828;bHLH_family:-0.8341203639;HNF4A_NR2F1,2:-0.834145877158;NFKB1_REL_RELA:-0.850149150328;TEAD1:-0.85594967517;MAFB:-0.903129247457;MYB:-0.923437246033;HMX1:-0.962643977948;BACH2:-0.971989290533;E2F1..5:-0.974467573365;XBP1:-1.01958678949;NKX3-1:-1.02870995003;SRF:-1.04343399699;FOS_FOS{B,L1}_JUN{B,D}:-1.0703044034;TFAP4:-1.10130709454;TBX4,5:-1.14455850893;TP53:-1.14601525898;RUNX1..3:-1.18323405138;HOX{A5,B5}:-1.3559989399;POU2F1..3:-1.46880632886;TBP:-1.51066493597;ZNF238:-1.56534007582;ESR1:-1.72456455274;NR6A1:-1.84187545588;GLI1..3:-2.02948925207;EN1,2:-2.41873446105;ZNF148:-2.69695490816;HES1:-3.7343175505
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10160-103A7;search_select_hide=table117:FF:10160-103A7
}}
}}

Latest revision as of 12:23, 3 June 2020

Name:pineal gland, adult, donor10252
Species:Human (Homo sapiens)
Library ID:CNhs12228
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuepineal gland
dev stageNA
sexfemale
age76
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationPeter Heutink
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005634
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12228 CAGE DRX008707 DRR009579
Accession ID Hg19

Library idBAMCTSS
CNhs12228 DRZ001004 DRZ002389
Accession ID Hg38

Library idBAMCTSS
CNhs12228 DRZ012354 DRZ013739
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10031downloaddownloaddownloaddownload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005634
sRNA-Seq  SAMD00005634
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10097 RNA-Seq DRX057154 DRR062913
SRhi10006.ACTTGA sRNA-Seq DRX037340 DRR041706
Accession ID Hg19

Library idBAMCTSS
RDhi10097 DRZ007989
SRhi10006.ACTTGA DRZ007348


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.481
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.294
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.223
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.126
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.126
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0.126
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.32
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.327
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.126
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.184
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.246
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral1.29
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.849
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.126
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0.126
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral1.199
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.526
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0535
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0608
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.869
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.126
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.126
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.568
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.526
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.126
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.223
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.126
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.126
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.223
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0.805
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12228

Jaspar motifP-value
MA0002.20.0339
MA0003.10.28
MA0004.10.341
MA0006.10.255
MA0007.10.207
MA0009.10.243
MA0014.10.707
MA0017.10.00368
MA0018.20.00267
MA0019.10.718
MA0024.10.96
MA0025.10.495
MA0027.10.891
MA0028.10.885
MA0029.10.517
MA0030.10.223
MA0031.10.574
MA0035.20.155
MA0038.10.052
MA0039.20.26
MA0040.10.45
MA0041.10.583
MA0042.10.827
MA0043.10.38
MA0046.10.0975
MA0047.20.0451
MA0048.10.158
MA0050.10.0702
MA0051.10.0397
MA0052.10.169
MA0055.10.0552
MA0057.10.538
MA0058.10.275
MA0059.10.0243
MA0060.10.0288
MA0061.10.00884
MA0062.20.244
MA0065.20.00275
MA0066.10.0944
MA0067.10.42
MA0068.10.157
MA0069.10.773
MA0070.10.968
MA0071.10.49
MA0072.10.106
MA0073.10.502
MA0074.10.336
MA0076.10.587
MA0077.10.756
MA0078.10.724
MA0079.20.941
MA0080.22.82078e-8
MA0081.10.0939
MA0083.10.0085
MA0084.10.849
MA0087.10.704
MA0088.10.512
MA0090.10.161
MA0091.10.395
MA0092.10.195
MA0093.10.372
MA0099.26.1537e-14
MA0100.10.626
MA0101.10.00555
MA0102.20.185
MA0103.10.162
MA0104.20.429
MA0105.10.00232
MA0106.10.0765
MA0107.10.00531
MA0108.20.214
MA0111.10.79
MA0112.20.00256
MA0113.10.251
MA0114.10.0164
MA0115.10.924
MA0116.10.0139
MA0117.10.951
MA0119.10.175
MA0122.10.693
MA0124.10.214
MA0125.10.341
MA0131.10.674
MA0135.10.0153
MA0136.13.35787e-8
MA0137.20.743
MA0138.20.708
MA0139.10.619
MA0140.10.145
MA0141.10.019
MA0142.10.898
MA0143.10.814
MA0144.10.0527
MA0145.10.21
MA0146.10.0292
MA0147.10.224
MA0148.10.033
MA0149.10.0929
MA0150.10.00149
MA0152.10.894
MA0153.10.347
MA0154.10.0278
MA0155.10.331
MA0156.11.47004e-5
MA0157.10.484
MA0159.10.0325
MA0160.10.0844
MA0162.10.0494
MA0163.16.35692e-5
MA0164.10.308
MA0258.10.0419
MA0259.10.702



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12228

Novel motifP-value
10.143
100.0538
1000.212
1010.766
1020.95
1030.0347
1040.191
1050.816
1060.00426
1070.00833
1080.631
1090.00785
110.028
1100.0982
1110.0415
1120.791
1130.437
1140.308
1150.654
1160.292
1170.031
1180.0458
1190.236
120.935
1200.153
1210.566
1220.827
1230.811
1240.294
1250.576
1260.365
1270.883
1280.0795
1290.352
130.0193
1300.551
1310.0668
1320.506
1330.0625
1340.539
1350.88
1360.00727
1370.833
1380.332
1390.55
140.752
1400.116
1410.504
1420.68
1430.133
1440.571
1450.0881
1460.309
1470.365
1480.033
1490.187
150.0338
1500.192
1510.462
1520.0186
1530.884
1540.732
1550.749
1560.498
1570.368
1580.0159
1590.0066
160.0526
1600.0375
1610.0753
1620.497
1630.593
1640.0176
1650.0505
1660.819
1670.412
1680.588
1690.019
170.0348
180.0952
190.224
20.716
200.264
210.186
220.254
230.202
240.158
250.398
264.92845e-4
270.604
280.812
290.0114
30.0927
300.807
310.867
320.0067
330.076
340.64
350.807
360.164
370.083
380.332
390.173
40.996
400.0253
410.153
420.461
430.117
440.136
450.714
460.0492
470.183
480.136
490.227
50.37
500.3
510.302
520.277
530.855
540.36
550.789
560.487
570.179
580.376
590.0546
60.686
600.0538
610.0605
620.377
630.0564
640.414
650.12
660.218
670.36
680.12
690.0411
70.168
700.00411
710.0118
720.655
730.0244
740.767
750.0639
760.282
770.159
780.0745
790.365
80.00915
800.843
810.256
820.648
830.17
840.415
850.0853
860.5
878.57144e-5
880.917
890.151
90.632
900.241
910.575
920.301
930.911
940.0702
950.015
960.767
970.698
980.205
990.477



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12228


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001905 (pineal body)
0001894 (diencephalon)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0003296 (gland of diencephalon)
0010133 (neuroendocrine gland)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002368 (endocrine gland)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002784 (regional part of diencephalon)
0002757 (regional part of epithalamus)
0010134 (secretory circumventricular organ)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005408 (circumventricular organ)
0001017 (central nervous system)
0001016 (nervous system)
0001890 (forebrain)
0000949 (endocrine system)
0001899 (epithalamus)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010160 (human pineal gland - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

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