FF:10196-103E7: Difference between revisions

Latest revision as of 12:26, 3 June 2020

Name:	ductus deferens, adult
Species:	Human (Homo sapiens)
Library ID:	CNhs12846
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	M
age	24
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	NA
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	R1234100-10
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005067

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12846		CAGE		DRX008644		DRR009516

Accession ID Hg19

Library id		BAM		CTSS
CNhs12846		DRZ000941		DRZ002326

Accession ID Hg38

Library id		BAM		CTSS
CNhs12846		DRZ012291		DRZ013676

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.332
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.394
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.138
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.144
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.186
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.289
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.144
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.144
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.565
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.474
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.144
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.461
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.1
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.128
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.144
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.059
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.624
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.066
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.144
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.0722
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.0377
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.473
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0.253
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	1.304
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.619
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0163
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.411
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12846

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0232
MA0003.1	MA0003.1	0.691
MA0004.1	MA0004.1	0.0779
MA0006.1	MA0006.1	0.308
MA0007.1	MA0007.1	0.711
MA0009.1	MA0009.1	0.303
MA0014.1	MA0014.1	0.753
MA0017.1	MA0017.1	0.0576
MA0018.2	MA0018.2	0.181
MA0019.1	MA0019.1	0.0883
MA0024.1	MA0024.1	0.0456
MA0025.1	MA0025.1	0.268
MA0027.1	MA0027.1	0.857
MA0028.1	MA0028.1	0.0216
MA0029.1	MA0029.1	0.625
MA0030.1	MA0030.1	0.0377
MA0031.1	MA0031.1	0.181
MA0035.2	MA0035.2	0.693
MA0038.1	MA0038.1	0.248
MA0039.2	MA0039.2	0.936
MA0040.1	MA0040.1	0.605
MA0041.1	MA0041.1	0.383
MA0042.1	MA0042.1	0.528
MA0043.1	MA0043.1	0.0189
MA0046.1	MA0046.1	5.15425e-4
MA0047.2	MA0047.2	0.945
MA0048.1	MA0048.1	0.125
MA0050.1	MA0050.1	0.11
MA0051.1	MA0051.1	0.0475
MA0052.1	MA0052.1	0.861
MA0055.1	MA0055.1	0.044
MA0057.1	MA0057.1	0.952
MA0058.1	MA0058.1	0.0229
MA0059.1	MA0059.1	4.52411e-4
MA0060.1	MA0060.1	0.636
MA0061.1	MA0061.1	3.33255e-6
MA0062.2	MA0062.2	1.98228e-4
MA0065.2	MA0065.2	0.0277
MA0066.1	MA0066.1	0.00316
MA0067.1	MA0067.1	0.00518
MA0068.1	MA0068.1	0.765
MA0069.1	MA0069.1	0.724
MA0070.1	MA0070.1	0.317
MA0071.1	MA0071.1	0.17
MA0072.1	MA0072.1	0.312
MA0073.1	MA0073.1	0.42
MA0074.1	MA0074.1	0.648
MA0076.1	MA0076.1	0.00815
MA0077.1	MA0077.1	0.685
MA0078.1	MA0078.1	0.116
MA0079.2	MA0079.2	0.331
MA0080.2	MA0080.2	2.52783e-4
MA0081.1	MA0081.1	0.00616
MA0083.1	MA0083.1	0.0103
MA0084.1	MA0084.1	0.481
MA0087.1	MA0087.1	0.0926
MA0088.1	MA0088.1	0.173
MA0090.1	MA0090.1	0.346
MA0091.1	MA0091.1	0.036
MA0092.1	MA0092.1	0.799
MA0093.1	MA0093.1	0.0878
MA0099.2	MA0099.2	4.71518e-21
MA0100.1	MA0100.1	0.0965
MA0101.1	MA0101.1	6.97671e-7
MA0102.2	MA0102.2	0.107
MA0103.1	MA0103.1	0.12
MA0104.2	MA0104.2	8.05149e-4
MA0105.1	MA0105.1	1.85838e-10
MA0106.1	MA0106.1	0.0598
MA0107.1	MA0107.1	4.54386e-7
MA0108.2	MA0108.2	0.0413
MA0111.1	MA0111.1	0.281
MA0112.2	MA0112.2	0.0382
MA0113.1	MA0113.1	0.0816
MA0114.1	MA0114.1	0.00726
MA0115.1	MA0115.1	0.263
MA0116.1	MA0116.1	3.77621e-6
MA0117.1	MA0117.1	0.139
MA0119.1	MA0119.1	0.83
MA0122.1	MA0122.1	0.986
MA0124.1	MA0124.1	0.62
MA0125.1	MA0125.1	0.725
MA0131.1	MA0131.1	0.718
MA0135.1	MA0135.1	0.564
MA0136.1	MA0136.1	3.14639e-4
MA0137.2	MA0137.2	0.567
MA0138.2	MA0138.2	0.86
MA0139.1	MA0139.1	0.291
MA0140.1	MA0140.1	0.211
MA0141.1	MA0141.1	0.0675
MA0142.1	MA0142.1	0.342
MA0143.1	MA0143.1	0.386
MA0144.1	MA0144.1	0.984
MA0145.1	MA0145.1	0.539
MA0146.1	MA0146.1	0.826
MA0147.1	MA0147.1	3.632e-4
MA0148.1	MA0148.1	0.838
MA0149.1	MA0149.1	0.0832
MA0150.1	MA0150.1	1.06882e-4
MA0152.1	MA0152.1	0.595
MA0153.1	MA0153.1	1.24466e-5
MA0154.1	MA0154.1	0.00158
MA0155.1	MA0155.1	0.887
MA0156.1	MA0156.1	2.51647e-6
MA0157.1	MA0157.1	0.578
MA0159.1	MA0159.1	0.348
MA0160.1	MA0160.1	0.717
MA0162.1	MA0162.1	0.276
MA0163.1	MA0163.1	1.35931e-9
MA0164.1	MA0164.1	0.471
MA0258.1	MA0258.1	0.481
MA0259.1	MA0259.1	0.0662

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12846

Novel motif	Logo	P-value
1	1	0.0999
10	10	0.125
100	100	0.461
101	101	0.76
102	102	0.955
103	103	0.289
104	104	0.467
105	105	0.0271
106	106	0.248
107	107	0.538
108	108	0.816
109	109	0.0114
11	11	0.0282
110	110	0.0346
111	111	0.181
112	112	0.548
113	113	0.577
114	114	0.342
115	115	0.992
116	116	0.804
117	117	0.0418
118	118	0.281
119	119	0.669
12	12	0.729
120	120	0.0211
121	121	0.806
122	122	0.903
123	123	0.847
124	124	0.204
125	125	0.254
126	126	0.537
127	127	0.413
128	128	0.592
129	129	0.641
13	13	0.259
130	130	0.211
131	131	0.934
132	132	0.0299
133	133	0.248
134	134	0.996
135	135	0.845
136	136	0.684
137	137	0.0708
138	138	0.538
139	139	0.505
14	14	0.869
140	140	0.713
141	141	0.368
142	142	0.524
143	143	0.0352
144	144	0.914
145	145	0.972
146	146	0.455
147	147	0.365
148	148	0.39
149	149	0.65
15	15	0.0202
150	150	0.5
151	151	0.67
152	152	0.591
153	153	0.873
154	154	0.835
155	155	0.796
156	156	0.579
157	157	0.174
158	158	0.621
159	159	0.0191
16	16	0.381
160	160	0.248
161	161	0.628
162	162	0.988
163	163	0.887
164	164	0.101
165	165	0.8
166	166	0.923
167	167	0.714
168	168	0.153
169	169	0.579
17	17	0.162
18	18	0.0086
19	19	0.612
2	2	0.225
20	20	0.304
21	21	0.868
22	22	0.727
23	23	0.759
24	24	0.306
25	25	0.157
26	26	0.0628
27	27	0.543
28	28	0.646
29	29	0.0224
3	3	0.0901
30	30	0.248
31	31	0.864
32	32	0.642
33	33	0.114
34	34	0.812
35	35	0.254
36	36	0.00974
37	37	0.168
38	38	0.723
39	39	0.696
4	4	0.139
40	40	0.0197
41	41	8.46895e-4
42	42	0.0923
43	43	0.12
44	44	0.666
45	45	0.916
46	46	0.033
47	47	0.022
48	48	0.186
49	49	0.162
5	5	0.201
50	50	0.597
51	51	0.151
52	52	0.204
53	53	0.666
54	54	0.358
55	55	0.761
56	56	0.716
57	57	0.37
58	58	0.479
59	59	0.134
6	6	0.323
60	60	0.568
61	61	0.377
62	62	0.102
63	63	0.475
64	64	0.219
65	65	0.48
66	66	0.0967
67	67	0.392
68	68	1
69	69	0.658
7	7	0.116
70	70	0.39
71	71	0.0646
72	72	0.35
73	73	0.0697
74	74	0.346
75	75	0.0187
76	76	0.0618
77	77	0.38
78	78	0.44
79	79	0.301
8	8	0.2
80	80	0.0293
81	81	0.682
82	82	0.723
83	83	0.805
84	84	0.949
85	85	0.309
86	86	0.382
87	87	0.0169
88	88	0.869
89	89	0.117
9	9	0.555
90	90	0.239
91	91	0.553
92	92	0.894
93	93	0.0579
94	94	0.0967
95	95	1.3681e-4
96	96	0.531
97	97	0.407
98	98	0.489
99	99	0.7

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12846

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010196 human ductus deferens - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001000 (vas deferens)
0000479 (tissue)
0000058 (duct)
0005156 (reproductive structure)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003135 (male reproductive organ)
0003133 (reproductive organ)
0005904 (duct of male reproductive system)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003101 (male organism)
0000079 (male reproductive system)
0005352 (spermatic cord)
0006947 (male genital duct)
0004054 (internal male genitalia)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010196 (human ductus deferens - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005067
+|accession_numbers=CAGE;DRX008644;DRR009516;DRZ000941;DRZ002326;DRZ012291;DRZ013676
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001000,UBERON:0000479,UBERON:0000058,UBERON:0005156,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0003133,UBERON:0005904,UBERON:0004175,UBERON:0010317,UBERON:0003101,UBERON:0000079,UBERON:0005352,UBERON:0006947,UBERON:0004054
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.61!405.63!EHF;;chr3:128212033..128212051,-!p1@GATA2!2.55!354.73!GATA2;;chr11:34645791..34645836,+!p3@EHF!2.30!200.05!EHF;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.14!136.92!POU3F3;;chr17:46682321..46682362,-!p1@HOXB6!2.09!123.11!HOXB6;;chr12:115122318..115122331,-!p2@TBX3!2.05!112.46!TBX3;;chr11:34535332..34535347,-!p2@ELF5!2.04!109.69!ELF5;;chr11:34535297..34535317,-!p1@ELF5!1.99!95.88!ELF5;;chr11:34642656..34642667,+!p2@EHF!1.94!86.81!EHF;;chr10:119301928..119301955,+!p7@EMX2!1.91!80.89!EMX2;;chr17:46675558..46675577,-!p2@HOXB6!1.86!71.81!HOXB6;;chr10:8096631..8096660,+!p1@GATA3!1.83!80.50!GATA3;;chr1:209979467..209979494,-!p1@IRF6!1.72!57.61!IRF6;;chr17:46692457..46692484,-!p2@HOXB8!1.69!48.14!HOXB8;;chr2:114036488..114036504,-!p1@PAX8!1.68!46.96!PAX8;;chr10:119302232..119302265,+!p1@EMX2!1.67!45.38!EMX2;;chr1:151804244..151804310,-!p1@RORC!1.66!44.19!RORC;;chr14:105935396..105935413,+!p4@MTA1!1.64!43.01!MTA1;;chr20:51588873..51588953,+!p1@TSHZ2!1.59!49.32!TSHZ2;;chr19:46801639..46801699,+!p1@HIF3A!1.59!37.49!HIF3A;;chr12:115122303..115122314,-!p6@TBX3!1.58!37.09!TBX3;;chr2:176994408..176994492,+!p1@HOXD8!1.58!37.09!HOXD8;;chr10:102505327..102505344,+!p1@PAX2!1.57!36.30!PAX2;;chr11:113930425..113930471,+!p1@ZBTB16!1.56!50.11!ZBTB16;;chr6:134210243..134210257,+!p1@TCF21!1.56!35.51!TCF21;;chr17:45928521..45928539,-!p1@SP6!1.52!31.96!SP6;;chr1:201979743..201979762,+!p1@ELF3!1.52!31.96!ELF3;;chr8:102504651..102504683,+!p1@GRHL2!1.51!31.17!GRHL2;;chr17:46667594..46667619,-!p1@HOXB3!1.48!29.20!HOXB3;;chr14:105935426..105935440,+!p9@MTA1!1.46!28.02!MTA1;;chr17:80797886..80797906,-!p1@ZNF750!1.46!27.62!ZNF750;;chr2:177001290..177001315,+!p1@HOXD3!1.46!27.62!HOXD3;;chr16:85932760..85932775,+!p1@IRF8!1.41!24.46!IRF8;;chr3:169381420..169381535,-!p1@MECOM!1.40!28.02!MECOM;;chr11:120110863..120110908,+!p2@POU2F3!1.39!23.68!POU2F3;;chrY:21906594..21906622,-!p1@KDM5D!1.39!23.68!KDM5D;;chr17:46667628..46667642,-!p2@HOXB3!1.38!22.89!HOXB3;;chr10:8095593..8095625,+!p3@GATA3!1.37!26.04!GATA3;;chr12:52445218..52445237,+!p1@NR4A1!1.36!267.92!NR4A1;;chr16:54320646..54320672,-!p2@IRX3!1.36!33.15!IRX3;;chr16:54320617..54320643,-!p3@IRX3!1.34!26.44!IRX3;;chr11:113930291..113930339,+!p2@ZBTB16!1.33!32.75!ZBTB16;;chr9:77112244..77112262,+!p1@RORB!1.33!22.89!RORB;;chr10:119302150..119302163,+!p8@EMX2!1.33!20.52!EMX2;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.32!20.12!POU3F3;;chr12:115122297..115122302,-!p15@TBX3!1.32!19.73!TBX3;;chr10:102505493..102505546,+!p2@PAX2!1.31!19.33!PAX2;;chr17:46692624..46692659,-!p3@HOXB8!1.31!19.33!HOXB8;;chrX:66763856..66763896,+!p1@AR!1.29!26.44!AR;;chr22:41763452..41763466,+!p2@TEF!1.29!18.55!TEF;;chr17:46675539..46675551,-!p7@HOXB6!1.29!18.55!HOXB6;;chr17:59477233..59477263,+!p1@TBX2!1.28!55.24!TBX2;;chr6:10412600..10412637,-!p1@TFAP2A!1.28!29.59!TFAP2A;;chr12:104531823..104531849,-!p5@NFYB!1.27!36.70!NFYB;;chr12:115122224..115122233,-!p12@TBX3!1.27!17.76!TBX3;;chr10:119302352..119302362,+!p9@EMX2!1.26!17.36!EMX2;;chr4:174451370..174451387,-!p1@HAND2!1.25!16.97!HAND2;;chr22:31739411..31739446,-!p5@PATZ1!1.24!16.57!PATZ1;;chr17:46621937..46621966,-!p2@HOXB2!1.23!43.01!HOXB2;;chr7:138666053..138666146,-!p1@KIAA1549!1.22!63.92!KIAA1549;;chr20:62680984..62680999,-!p1@SOX18!1.22!20.52!SOX18;;chr2:122042770..122042785,-!p1@TFCP2L1!1.22!15.78!TFCP2L1;;chr1:2985760..2985774,+!p1@PRDM16!1.21!15.39!PRDM16;;chr21:39870339..39870443,-!p1@ERG!1.19!14.60!ERG;;chr10:119302182..119302196,+!p6@EMX2!1.19!14.60!EMX2;;chr10:119302268..119302282,+!p4@EMX2!1.18!14.21!EMX2;;chr2:177053386..177053402,+!p1@HOXD1!1.18!14.21!HOXD1;;chr11:113930401..113930422,+!p3@ZBTB16!1.17!13.81!ZBTB16;;chr11:34535276..34535287,-!p3@ELF5!1.17!13.81!ELF5;;chr7:97840743..97840786,+!p1@BHLHA15!1.17!13.81!BHLHA15;;chr3:114819124..114819200,-!p3@ZBTB20!1.16!31.57!ZBTB20;;chr1:40105299..40105326,-!p1@HEYL!1.16!13.42!HEYL;;chr9:4300050..4300118,-!p1@GLIS3!1.15!84.84!GLIS3;;chr17:46622070..46622109,-!p1@HOXB2!1.15!29.59!HOXB2;;chr17:46703212..46703238,-!p2@HOXB9!1.15!13.02!HOXB9;;chr16:67198683..67198698,+!p2@HSF4!1.13!12.63!HSF4;;chr10:119302645..119302712,+!p3@EMX2!1.13!12.63!EMX2;;chr3:128206762..128206781,-!p2@GATA2!1.12!75.37!GATA2;;chr9:114287433..114287513,+!p1@ZNF483!1.12!31.96!ZNF483;;chr10:119303078..119303169,+!p2@EMX2!1.12!12.23!EMX2;;chr17:46671108..46671147,-!p1@HOXB5!1.11!11.84!HOXB5;;chr6:10413188..10413249,-!p7@TFAP2A!1.11!11.84!TFAP2A;;chr19:56146352..56146420,+!p2@ZNF580,p2@ZNF581!1.10!75.37!ZNF580;;chr16:54320675..54320715,-!p1@IRX3!1.10!25.25!IRX3;;chr7:128577972..128578047,+!p1@IRF5!1.10!18.55!IRF5;;chr17:46688334..46688385,-!p1@HOXB7!1.10!16.97!HOXB7;;chr22:29196433..29196445,-!p4@XBP1!1.09!12.63!XBP1;;chr22:38380543..38380569,-!p1@SOX10!1.09!11.44!SOX10;;chr3:114819101..114819121,-!p7@ZBTB20!1.09!11.44!ZBTB20;;chr17:46675586..46675600,-!p6@HOXB6!1.09!11.44!HOXB6;;chr7:27192185..27192209,-!p1@HOXA3!1.09!11.44!HOXA3;;chr8:102504979..102505010,+!p2@GRHL2!1.09!11.44!GRHL2;;chr6:10415276..10415341,-!p2@TFAP2A!1.08!13.42!TFAP2A;;chr6:50786591..50786614,+!p1@TFAP2B!1.08!11.05!TFAP2B;;chr20:18038521..18038571,-!p1@OVOL2!1.08!11.05!OVOL2;;chr9:4299979..4299996,-!p3@GLIS3!1.07!17.76!GLIS3;;chr11:34663654..34663663,+!p17@EHF!1.07!10.65!EHF;;chr19:20188776..20188826,+!p1@ZNF90!1.06!28.41!ZNF90;;chr9:4299959..4299974,-!p4@GLIS3!1.06!16.97!GLIS3;;chr9:14314131..14314147,-!p2@NFIB!1.05!57.21!NFIB;;chr3:18466787..18466839,-!p1@SATB1!1.05!46.56!SATB1;;chr17:38256799..38256815,-!p3@NR1D1!1.05!18.55!NR1D1;;chr17:46675420..46675465,-!p3@HOXB6!1.05!11.84!HOXB6;;chr16:54319010..54319041,-!p8@IRX3!1.05!10.26!IRX3;;chr22:24093154..24093183,-!p2@ZNF70!1.05!10.26!ZNF70;;chr3:189507432..189507459,+!p1@TP63!1.05!10.26!TP63;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.05!10.26!PEG3;;chr19:20748557..20748568,-!p2@ZNF737!1.04!11.44!ZNF737;;chr17:46692603..46692621,-!p6@HOXB8!1.04!9.86!HOXB8;;chrY:2803415..2803468,+!p1@ZFY!1.04!9.86!ZFY;;chr11:2292226..2292270,-!p1@ASCL2!1.04!9.86!ASCL2;;chr17:38256822..38256851,-!p1@NR1D1!1.02!76.15!NR1D1;;chr17:59477197..59477212,+!p2@TBX2!1.02!16.57!TBX2;;chr17:46675469..46675481,-!p4@HOXB6!1.02!9.47!HOXB6;;chr11:120110844..120110861,+!p3@POU2F3!1.02!9.47!POU2F3;;chr11:34645764..34645775,+!p9@EHF!1.02!9.47!EHF;;chr12:115122262..115122271,-!p7@TBX3!1.02!9.47!TBX3;;chr8:102504690..102504704,+!p3@GRHL2!1.02!9.47!GRHL2;;chr16:54320158..54320200,-!p5@IRX3!1.01!13.42!IRX3;;chr17:17726907..17726958,-!p2@SREBF1!1.00!56.82!SREBF1;;chr20:55204351..55204377,+!p1@TFAP2C!1.00!11.44!TFAP2C;;chr10:119302508..119302559,+!p5@EMX2!1.00!9.08!EMX2;;chr13:72441315..72441454,-!p1@DACH1!0.99!17.76!DACH1;;chr11:34533257..34533273,-!p4@ELF5!0.99!8.68!ELF5;;chr8:77593474..77593612,+!p1@ZFHX4!0.98!37.09!ZFHX4;;chr16:73092898..73092931,-!p1@ZFHX3!0.98!33.54!ZFHX3;;chr8:71316021..71316068,-!p1@NCOA2!0.97!79.71!NCOA2;;chr16:79634595..79634620,-!p2@MAF!0.97!15.39!MAF;;chr5:92919100..92919135,+!p3@NR2F1!0.97!10.26!NR2F1;;chr12:52437488..52437507,+!p2@NR4A1!0.97!8.29!NR4A1;;chr2:177001268..177001287,+!p3@HOXD3!0.97!8.29!HOXD3;;chr3:114819073..114819100,-!p10@ZBTB20!0.97!8.29!ZBTB20;;chr12:104531945..104531996,-!p1@NFYB!0.96!117.19!NFYB;;chr9:14314566..14314618,-!p1@NFIB!0.96!101.41!NFIB;;chr1:61547894..61547968,+!p2@NFIA!0.96!24.07!NFIA;;chr5:158526917..158526932,-!p1@EBF1!0.96!20.52!EBF1;;chr15:96869255..96869291,+!p6@NR2F2!0.96!14.99!NR2F2;;chr15:96869222..96869251,+!p18@NR2F2!0.95!9.47!NR2F2;;chr16:67198633..67198671,+!p1@HSF4!0.95!7.89!HSF4;;chr5:2751762..2751784,-!p1@IRX2!0.95!7.89!IRX2;;chr7:73038839..73038862,-!p1@MLXIPL!0.95!7.89!MLXIPL;;chr11:34643148..34643157,+!p16@EHF!0.95!7.89!EHF;;chr14:105935576..105935594,+!p11@MTA1!0.95!7.89!MTA1;;chr16:79634624..79634642,-!p1@MAF!0.94!31.57!MAF;;chr3:114866084..114866118,-!p2@ZBTB20!0.94!29.20!ZBTB20;;chr18:42260059..42260132,+!p1@SETBP1!0.94!13.02!SETBP1;;chr1:61548225..61548299,+!p1@NFIA!0.93!101.80!NFIA;;chr15:60884706..60884743,-!p1@RORA!0.93!39.85!RORA;;chr19:38085768..38085821,+!p1@ZNF540!0.93!11.44!ZNF540;;chr17:46703528..46703549,-!p5@HOXB9!0.93!7.50!HOXB9;;chr1:10856694..10856715,-!p3@CASZ1!0.93!7.50!CASZ1;;chr20:51589133..51589159,+!p2@TSHZ2!0.93!7.50!TSHZ2;;chr2:145277882..145277967,-!p3@ZEB2!0.92!13.02!ZEB2;;chr16:54320101..54320125,-!p4@IRX3!0.92!10.65!IRX3;;chr7:149470641..149470694,-!p1@ZNF467!0.91!33.93!ZNF467;;chr12:104531854..104531893,-!p2@NFYB!0.91!26.83!NFYB;;chr5:71803177..71803255,-!p1@ZNF366!0.91!7.10!ZNF366;;chr7:100065686..100065701,-!p2@TSC22D4!0.91!7.10!TSC22D4;;chr16:54320280..54320291,-!p9@IRX3!0.91!7.10!IRX3;;chr17:46690839..46690884,-!p1@HOXB8!0.91!7.10!HOXB8;;chr19:20278043..20278054,+!p2@ZNF486!0.91!7.10!ZNF486;;chr19:49140609..49140643,-!p1@DBP!0.90!41.04!DBP;;chr8:71315615..71315638,-!p3@NCOA2!0.90!19.33!NCOA2;;chr17:46655704..46655718,-!p2@HOXB4!0.90!10.65!HOXB4;;chrX:107018969..107019024,-!p6@TSC22D3!0.90!9.86!TSC22D3;;chr2:10091815..10091864,+!p1@GRHL1!0.90!9.47!GRHL1;;chr6:19837592..19837621,+!p1@ID4!0.89!43.80!ID4;;chrX:66763815..66763854,+!p2@AR!0.89!9.08!AR;;chr16:54320322..54320343,-!p7@IRX3!0.89!6.71!IRX3;;chr17:35294075..35294102,+!p1@ENST00000559335!0.89!6.71!LHX1;;chr19:20748574..20748599,-!p1@ZNF737!0.88!41.43!ZNF737;;chrX:70315688..70315709,+!p1@FOXO4!0.88!15.78!FOXO4;;chr19:20959098..20959117,+!p1@ZNF66P!0.87!28.02!ZNF66P;;chr17:46687959..46688007,-!p2@HOXB7!0.87!9.08!HOXB7;;chr12:24715376..24715432,-!p1@SOX5!0.87!8.29!SOX5;;chr15:61521417..61521460,-!p2@RORA!0.86!14.60!RORA;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.86!13.81!ZNF395;;chr3:168864315..168864339,-!p2@MECOM!0.86!10.65!MECOM;;chr10:8096772..8096787,+!p2@GATA3!0.86!7.50!GATA3;;chr12:115122005..115122016,-!p3@TBX3!0.86!7.50!TBX3;;chr19:57183114..57183145,-!p1@ZNF835!0.86!7.10!ZNF835;;chr17:46675619..46675642,-!p5@HOXB6!0.86!6.31!HOXB6;;chr3:169381183..169381205,-!p4@MECOM!0.86!6.31!MECOM;;chr5:169532896..169532904,+!p1@FOXI1!0.86!6.31!FOXI1;;chr7:15726296..15726315,-!p1@MEOX2!0.86!6.3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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000079;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006947
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 37: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/ductus%2520deferens%252c%2520adult.CNhs12846.10196-103E7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/ductus%2520deferens%252c%2520adult.CNhs12846.10196-103E7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/ductus%2520deferens%252c%2520adult.CNhs12846.10196-103E7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/ductus%2520deferens%252c%2520adult.CNhs12846.10196-103E7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/ductus%2520deferens%252c%2520adult.CNhs12846.10196-103E7.hg38.nobarcode.ctss.bed.gz
 |id=FF:10196-103E7
 |is_a=EFO:0002091;;FF:0010196
 |is_obsolete=
+|library_id=CNhs12846
+|library_id_phase_based=2:CNhs12846
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10196
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10196
 |name=ductus deferens, adult
 |namespace=FANTOM5
@@ Line 45: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12846,LSID973,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=103
 |rna_catalog_number=R1234100-10
@@ Line 57: / Line 76: @@
 |rna_rin=
 |rna_sample_type=
-|rna_tube_id=103E7
+|rna_tube_id=1.03E+09
 |rna_weight_ug=10
-|sample_age=M
+|sample_age=24
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 75: / Line 95: @@
 |sample_id=10196
 |sample_note=
-|sample_sex=24
+|sample_sex=M
 |sample_species=Human (Homo sapiens)
 |sample_strain=
@@ Line 81: / Line 101: @@
 |top_motifs=AR:3.06851309951;NR3C1:2.93681801041;IKZF2:2.45128033777;GATA4:2.02289351686;XBP1:1.98887785649;MYBL2:1.94811918312;SRF:1.90548763669;FOX{D1,D2}:1.71853719222;SP1:1.54538048375;SNAI1..3:1.50689839401;SOX5:1.49165284555;PRDM1:1.46422557972;ATF6:1.45520601009;TFAP2{A,C}:1.41538793559;XCPE1{core}:1.37579916483;RREB1:1.30297713795;FOXP1:1.29637671462;HOX{A6,A7,B6,B7}:1.26724927828;FOXO1,3,4:1.23131236229;GTF2I:1.21048115917;MZF1:1.21043654823;MAZ:1.18500124603;ZEB1:1.16270868301;PAX6:1.16162893603;GFI1B:1.13634693914;MYFfamily:1.08569320515;HNF1A:1.08535864309;NFATC1..3:1.0744424484;TFCP2:1.03391526169;TFAP2B:1.02782827001;POU6F1:1.01778614511;HIC1:1.01280383691;ESR1:1.01100797904;PAX5:0.976167246605;TLX1..3_NFIC{dimer}:0.975701547096;HBP1_HMGB_SSRP1_UBTF:0.972384065663;NKX3-2:0.96973046289;ARID5B:0.896888076484;PATZ1:0.869450858517;RFX2..5_RFXANK_RFXAP:0.855837150286;GATA6:0.849809541066;ZIC1..3:0.828741741857;FOXN1:0.824328236917;MED-1{core}:0.819514806051;BPTF:0.793609374285;TEAD1:0.729050517269;MYOD1:0.722824627731;HMX1:0.720511607076;FOXQ1:0.708815869598;TLX2:0.703960689897;EVI1:0.651598880182;FOX{I1,J2}:0.621295374211;GTF2A1,2:0.606354899046;HAND1,2:0.601852529224;TFAP4:0.590964347554;MTF1:0.587684065343;SREBF1,2:0.586412534594;ESRRA:0.570424647507;SMAD1..7,9:0.569620102599;FOXP3:0.550962065526;FOXL1:0.546499626928;ZBTB6:0.52077207628;SPZ1:0.502391395583;PITX1..3:0.493190327919;EGR1..3:0.487488806976;HOX{A4,D4}:0.487252974614;CDC5L:0.486063332954;EBF1:0.469774507741;RFX1:0.466152318342;NR1H4:0.439563054078;LMO2:0.432142074884;CDX1,2,4:0.406590065597;FOXM1:0.385643383099;HSF1,2:0.369472268693;TBP:0.369274136692;NR6A1:0.36516208293;RBPJ:0.331945846745;MTE{core}:0.329849409519;POU2F1..3:0.314505902926;TOPORS:0.282508022927;KLF4:0.281192440425;ZNF143:0.277739360132;TP53:0.266277198797;GZF1:0.261371339116;ZFP161:0.247897937204;ZNF384:0.240459811444;UFEwm:0.239457059972;POU3F1..4:0.238735476521;TEF:0.231686785282;HES1:0.215772072115;DBP:0.171307479754;BREu{core}:0.148622104746;TGIF1:0.140922211183;NKX2-3_NKX2-5:0.120287712741;CREB1:0.117429990516;MEF2{A,B,C,D}:0.105912813336;NFIX:0.0963239319809;STAT1,3:0.0931603767639;HMGA1,2:0.0681718387913;NHLH1,2:0.0474980242349;PBX1:0.0107972226131;FOXD3:0.0098877426704;NRF1:-0.0239841764676;PAX4:-0.0345253943245;ZNF423:-0.083019805027;GCM1,2:-0.0882811489579;IRF7:-0.0929633822221;EP300:-0.0974766067232;ADNP_IRX_SIX_ZHX:-0.128320862878;ATF2:-0.133642330602;SOX17:-0.179579268536;ONECUT1,2:-0.18359344206;LEF1_TCF7_TCF7L1,2:-0.184720562801;GFI1:-0.188794838164;NFY{A,B,C}:-0.208261868136;AIRE:-0.219620124138;NR5A1,2:-0.222744090642;TBX4,5:-0.245324003722;ZBTB16:-0.249393383147;SPI1:-0.25743265161;REST:-0.26791370045;ZNF238:-0.280007903169;IKZF1:-0.286445816332;ETS1,2:-0.298742154946;AHR_ARNT_ARNT2:-0.302699500607;ATF4:-0.312098288329;SOX{8,9,10}:-0.327772740123;HNF4A_NR2F1,2:-0.339824261279;POU5F1:-0.344773890994;NKX6-1,2:-0.353083258017;NANOG:-0.374035989024;ALX4:-0.378756649046;IRF1,2:-0.386700692963;SPIB:-0.401327351688;ELF1,2,4:-0.408063896883;T:-0.417793274041;PAX1,9:-0.437630318903;NFE2L1:-0.455486552692;ALX1:-0.463727009136;HLF:-0.467310993491;ATF5_CREB3:-0.47803004969;SOX2:-0.479117051513;STAT2,4,6:-0.493160291624;ELK1,4_GABP{A,B1}:-0.503318536681;PDX1:-0.50540507453;HOX{A5,B5}:-0.515128893942;ZNF148:-0.520904124801;NFIL3:-0.535542856722;CUX2:-0.544006126985;HOXA9_MEIS1:-0.552169367739;PRRX1,2:-0.562284737906;RORA:-0.566574843437;VSX1,2:-0.587263280736;DMAP1_NCOR{1,2}_SMARC:-0.597329505617;JUN:-0.626190838448;FOSL2:-0.635704113403;RXR{A,B,G}:-0.651288694698;YY1:-0.654968304784;RXRA_VDR{dimer}:-0.671521383088;CEBPA,B_DDIT3:-0.674347344429;NFKB1_REL_RELA:-0.695110881367;NKX2-1,4:-0.718850625215;FOX{F1,F2,J1}:-0.72503451841;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.731034924478;HIF1A:-0.757729248403;NFE2:-0.759056043679;PAX3,7:-0.772745084229;BACH2:-0.779419846838;POU1F1:-0.781426564894;LHX3,4:-0.82218983372;RUNX1..3:-0.838742756009;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.876670843962;PAX2:-0.931542365254;TFDP1:-0.932733679016;E2F1..5:-0.954208164126;STAT5{A,B}:-0.954713583515;FOS_FOS{B,L1}_JUN{B,D}:-0.965777074383;NFE2L2:-0.981057334844;GLI1..3:-1.00230247745;NKX2-2,8:-1.01334662763;NANOG{mouse}:-1.0187843962;FOXA2:-1.07111373667;EN1,2:-1.1295875426;TAL1_TCF{3,4,12}:-1.205367242;MAFB:-1.20585035425;bHLH_family:-1.25075197258;PAX8:-1.47534420087;NKX3-1:-1.61756123962;OCT4_SOX2{dimer}:-1.62622289865;MYB:-1.76499907557;CRX:-1.89975137312;PPARG:-1.92610705862
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10196-103E7;search_select_hide=table117:FF:10196-103E7
 }}

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FF:10196-103E7: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:26, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0