FF:10409-106B4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005883 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007859;DRR008731;DRZ000156;DRZ001541;DRZ011506;DRZ012891 | ||
| | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240,DOID:1036,DOID:8692 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100737,FF:0102580,FF:0101035,FF:0100740,FF:0100732 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0101035 | |fonse_cell_line=FF:0101035 | ||
|fonse_cell_line_closure=FF:0101035 | |fonse_cell_line_closure=FF:0101035 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aKU812.CNhs10727.10409-106B4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aKU812.CNhs10727.10409-106B4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aKU812.CNhs10727.10409-106B4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aKU812.CNhs10727.10409-106B4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aKU812.CNhs10727.10409-106B4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10409-106B4 | |id=FF:10409-106B4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0100732 | ||
|is_obsolete= | |||
|library_id=CNhs10727 | |||
|library_id_phase_based=2:CNhs10727 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10409 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10409 | |||
|name=chronic myelogenous leukemia cell line:KU812 | |name=chronic myelogenous leukemia cell line:KU812 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10727,LSID691,release008,COMPLETED | |profile_hcage=CNhs10727,LSID691,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=59.6555 | |rna_weight_ug=59.6555 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB0495 | |sample_cell_catalog=RCB0495 | ||
|sample_cell_line=KU812 | |sample_cell_line=KU812 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.46333615684179e-283!GO:0043227;membrane-bound organelle;1.79242586111036e-242!GO:0043231;intracellular membrane-bound organelle;6.00830816333705e-242!GO:0043226;organelle;6.44943855983887e-234!GO:0043229;intracellular organelle;2.51249128330817e-233!GO:0005737;cytoplasm;7.46837083072927e-162!GO:0044422;organelle part;4.54268148951346e-160!GO:0044446;intracellular organelle part;4.17994418086768e-158!GO:0005634;nucleus;1.04239486290569e-133!GO:0044237;cellular metabolic process;1.11093964154608e-128!GO:0044238;primary metabolic process;3.34180796343878e-124!GO:0043170;macromolecule metabolic process;4.25160144286746e-116!GO:0044444;cytoplasmic part;3.76384805629636e-111!GO:0032991;macromolecular complex;1.04755935902292e-109!GO:0044428;nuclear part;4.70458804674378e-106!GO:0043233;organelle lumen;4.3299085383711e-96!GO:0031974;membrane-enclosed lumen;4.3299085383711e-96!GO:0030529;ribonucleoprotein complex;1.62714019916893e-94!GO:0003723;RNA binding;1.93716900656157e-89!GO:0043283;biopolymer metabolic process;2.19051573274562e-77!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.26467944962649e-74!GO:0010467;gene expression;2.09993733057603e-70!GO:0005739;mitochondrion;7.77823694667603e-68!GO:0031981;nuclear lumen;2.59760824616856e-65!GO:0006396;RNA processing;8.24398226434199e-65!GO:0005515;protein binding;4.43376755663494e-62!GO:0006412;translation;1.86064931897973e-55!GO:0043234;protein complex;1.14878137930136e-54!GO:0016071;mRNA metabolic process;5.08170572966188e-53!GO:0003676;nucleic acid binding;9.77151550367688e-53!GO:0006259;DNA metabolic process;1.11499987810258e-51!GO:0005840;ribosome;2.61293816829866e-51!GO:0019538;protein metabolic process;2.56718720942719e-49!GO:0008380;RNA splicing;2.27882428040632e-46!GO:0006397;mRNA processing;5.42430515234546e-45!GO:0044267;cellular protein metabolic process;1.24843411248932e-44!GO:0044429;mitochondrial part;1.70056377057958e-44!GO:0033036;macromolecule localization;2.00393905196268e-44!GO:0009058;biosynthetic process;3.36406517886501e-44!GO:0003735;structural constituent of ribosome;5.1780355146006e-44!GO:0044260;cellular macromolecule metabolic process;6.43203042466955e-44!GO:0016043;cellular component organization and biogenesis;9.15819479322608e-44!GO:0009059;macromolecule biosynthetic process;2.10114917515853e-43!GO:0031967;organelle envelope;3.57363155602427e-43!GO:0031975;envelope;8.9018436335037e-43!GO:0044249;cellular biosynthetic process;9.36601592067322e-43!GO:0005654;nucleoplasm;1.24579393193667e-42!GO:0031090;organelle membrane;9.20357215687408e-42!GO:0015031;protein transport;1.03977155094802e-40!GO:0016070;RNA metabolic process;3.61672450965577e-40!GO:0006996;organelle organization and biogenesis;6.3835054730687e-40!GO:0065003;macromolecular complex assembly;2.01573420476185e-39!GO:0008104;protein localization;4.31155783569947e-39!GO:0033279;ribosomal subunit;3.14201588323419e-38!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.2763458092562e-38!GO:0045184;establishment of protein localization;1.00749959127726e-37!GO:0007049;cell cycle;3.23704841828159e-37!GO:0005829;cytosol;1.01122318096988e-36!GO:0043228;non-membrane-bound organelle;3.41122906813219e-36!GO:0043232;intracellular non-membrane-bound organelle;3.41122906813219e-36!GO:0005681;spliceosome;3.79149862745258e-34!GO:0022607;cellular component assembly;3.83460473166716e-34!GO:0044451;nucleoplasm part;2.36749959183573e-33!GO:0000166;nucleotide binding;7.63347523082587e-33!GO:0046907;intracellular transport;2.03285810421279e-32!GO:0022402;cell cycle process;7.05335178786409e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.22203144961601e-28!GO:0006886;intracellular protein transport;4.79349947380649e-28!GO:0006974;response to DNA damage stimulus;1.22392924355788e-27!GO:0000278;mitotic cell cycle;3.52615712806981e-27!GO:0005694;chromosome;3.82972733177059e-27!GO:0051276;chromosome organization and biogenesis;4.84406772543924e-27!GO:0044445;cytosolic part;2.93542999475677e-26!GO:0005740;mitochondrial envelope;3.46998213463995e-26!GO:0019866;organelle inner membrane;2.42222261492916e-25!GO:0006281;DNA repair;3.14374362928259e-25!GO:0031966;mitochondrial membrane;2.62855391629803e-24!GO:0044427;chromosomal part;4.72865294666248e-24!GO:0022403;cell cycle phase;5.30426374354135e-24!GO:0016874;ligase activity;8.6397405236848e-24!GO:0051649;establishment of cellular localization;1.64433840332813e-23!GO:0032553;ribonucleotide binding;2.22619667583594e-23!GO:0032555;purine ribonucleotide binding;2.22619667583594e-23!GO:0051641;cellular localization;3.2385296007229e-23!GO:0005743;mitochondrial inner membrane;6.71228172511977e-23!GO:0031980;mitochondrial lumen;7.08541696042271e-23!GO:0005759;mitochondrial matrix;7.08541696042271e-23!GO:0005730;nucleolus;7.08541696042271e-23!GO:0016462;pyrophosphatase activity;8.68202224142298e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.18701349440314e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;1.54275404294075e-22!GO:0017076;purine nucleotide binding;5.09015735605997e-22!GO:0005524;ATP binding;6.7456398799167e-22!GO:0032559;adenyl ribonucleotide binding;1.42239823089414e-21!GO:0017111;nucleoside-triphosphatase activity;2.21232937254736e-21!GO:0022618;protein-RNA complex assembly;2.72605478878359e-21!GO:0015935;small ribosomal subunit;7.36084326620096e-21!GO:0006325;establishment and/or maintenance of chromatin architecture;1.90187916454177e-20!GO:0030554;adenyl nucleotide binding;5.90380199031224e-20!GO:0000087;M phase of mitotic cell cycle;6.19427325189075e-20!GO:0006260;DNA replication;8.05987583473548e-20!GO:0044265;cellular macromolecule catabolic process;9.85356128121116e-20!GO:0006323;DNA packaging;1.26769666284494e-19!GO:0007067;mitosis;1.73763587600998e-19!GO:0006457;protein folding;2.07669964315495e-19!GO:0009719;response to endogenous stimulus;3.14983306640473e-19!GO:0000279;M phase;3.62269650632272e-19!GO:0006512;ubiquitin cycle;3.90027084833759e-19!GO:0012505;endomembrane system;1.82778868846545e-18!GO:0015934;large ribosomal subunit;2.29376524346808e-18!GO:0006119;oxidative phosphorylation;2.66352617666132e-18!GO:0005635;nuclear envelope;4.29106288178283e-18!GO:0051301;cell division;4.71805572249723e-18!GO:0008135;translation factor activity, nucleic acid binding;6.37197648619408e-18!GO:0044455;mitochondrial membrane part;1.8734424817095e-17!GO:0042254;ribosome biogenesis and assembly;2.33768958302752e-17!GO:0006511;ubiquitin-dependent protein catabolic process;2.33768958302752e-17!GO:0016604;nuclear body;2.81076592023093e-17!GO:0019941;modification-dependent protein catabolic process;3.02725032654389e-17!GO:0043632;modification-dependent macromolecule catabolic process;3.02725032654389e-17!GO:0008134;transcription factor binding;3.29968490407407e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;3.42202354081623e-17!GO:0000398;nuclear mRNA splicing, via spliceosome;4.06017353866193e-17!GO:0000375;RNA splicing, via transesterification reactions;4.06017353866193e-17!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.06017353866193e-17!GO:0043285;biopolymer catabolic process;4.85559112431759e-17!GO:0044257;cellular protein catabolic process;1.02357618360283e-16!GO:0044453;nuclear membrane part;2.7489735826276e-16!GO:0031965;nuclear membrane;3.31843618806377e-16!GO:0016887;ATPase activity;3.72979273462982e-16!GO:0004386;helicase activity;6.07598810751613e-16!GO:0044248;cellular catabolic process;9.02890848162996e-16!GO:0009057;macromolecule catabolic process;1.43227692156214e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.95231981605005e-15!GO:0006605;protein targeting;2.84571054735269e-15!GO:0050657;nucleic acid transport;2.9004659492443e-15!GO:0051236;establishment of RNA localization;2.9004659492443e-15!GO:0050658;RNA transport;2.9004659492443e-15!GO:0042623;ATPase activity, coupled;3.27071325675285e-15!GO:0043412;biopolymer modification;4.50063994352166e-15!GO:0006403;RNA localization;4.64748203968051e-15!GO:0048770;pigment granule;5.28417977866759e-15!GO:0042470;melanosome;5.28417977866759e-15!GO:0065004;protein-DNA complex assembly;8.1785047858749e-15!GO:0005643;nuclear pore;2.90212861232184e-14!GO:0051186;cofactor metabolic process;3.71540648573649e-14!GO:0005761;mitochondrial ribosome;3.90493652559945e-14!GO:0000313;organellar ribosome;3.90493652559945e-14!GO:0006399;tRNA metabolic process;5.04035265143988e-14!GO:0003743;translation initiation factor activity;6.35034414422403e-14!GO:0000502;proteasome complex (sensu Eukaryota);9.58860313283595e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.48129913288946e-13!GO:0050794;regulation of cellular process;1.70198370854802e-13!GO:0016568;chromatin modification;1.76379634993641e-13!GO:0016607;nuclear speck;2.23037449576788e-13!GO:0006333;chromatin assembly or disassembly;2.49273470100412e-13!GO:0000074;regulation of progression through cell cycle;2.53081806795096e-13!GO:0051726;regulation of cell cycle;2.53081806795096e-13!GO:0008026;ATP-dependent helicase activity;2.5652115108275e-13!GO:0005746;mitochondrial respiratory chain;3.47941885088833e-13!GO:0051028;mRNA transport;3.47941885088833e-13!GO:0006913;nucleocytoplasmic transport;3.80582654135158e-13!GO:0000785;chromatin;4.65073467975399e-13!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.81134778309507e-13!GO:0006413;translational initiation;4.91172229961247e-13!GO:0051169;nuclear transport;7.84958611244736e-13!GO:0030163;protein catabolic process;8.06689226060252e-13!GO:0006464;protein modification process;1.04174069210026e-12!GO:0051082;unfolded protein binding;1.17546726453144e-12!GO:0003712;transcription cofactor activity;2.6892799849171e-12!GO:0050136;NADH dehydrogenase (quinone) activity;2.87235908415534e-12!GO:0003954;NADH dehydrogenase activity;2.87235908415534e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.87235908415534e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.73760780564805e-12!GO:0012501;programmed cell death;5.24664264129162e-12!GO:0006915;apoptosis;5.29102138150536e-12!GO:0019222;regulation of metabolic process;5.38886344876478e-12!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.45739487831373e-12!GO:0065002;intracellular protein transport across a membrane;5.5151634175574e-12!GO:0006446;regulation of translational initiation;7.57995264572115e-12!GO:0046930;pore complex;9.53832157631465e-12!GO:0006364;rRNA processing;2.21060488466173e-11!GO:0016072;rRNA metabolic process;2.66916224143815e-11!GO:0008219;cell death;2.71682270751444e-11!GO:0016265;death;2.71682270751444e-11!GO:0048193;Golgi vesicle transport;2.74222619410213e-11!GO:0043687;post-translational protein modification;3.08569094881022e-11!GO:0005783;endoplasmic reticulum;4.72198877281726e-11!GO:0006732;coenzyme metabolic process;4.84027633067638e-11!GO:0042775;organelle ATP synthesis coupled electron transport;6.47514856247083e-11!GO:0042773;ATP synthesis coupled electron transport;6.47514856247083e-11!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.67585118592956e-11!GO:0004812;aminoacyl-tRNA ligase activity;6.67585118592956e-11!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.67585118592956e-11!GO:0044432;endoplasmic reticulum part;9.47383184878809e-11!GO:0043038;amino acid activation;1.43527591002039e-10!GO:0006418;tRNA aminoacylation for protein translation;1.43527591002039e-10!GO:0043039;tRNA aminoacylation;1.43527591002039e-10!GO:0030964;NADH dehydrogenase complex (quinone);1.63102515704654e-10!GO:0045271;respiratory chain complex I;1.63102515704654e-10!GO:0005747;mitochondrial respiratory chain complex I;1.63102515704654e-10!GO:0008565;protein transporter activity;1.82566707730499e-10!GO:0006366;transcription from RNA polymerase II promoter;2.57099027147106e-10!GO:0017038;protein import;2.7111724319248e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.99384739914572e-10!GO:0006261;DNA-dependent DNA replication;7.76533558135977e-10!GO:0031323;regulation of cellular metabolic process;8.46348941733664e-10!GO:0016779;nucleotidyltransferase activity;8.98548786643302e-10!GO:0005819;spindle;9.33521230894041e-10!GO:0006350;transcription;1.05377977706027e-09!GO:0051188;cofactor biosynthetic process;1.3652853920685e-09!GO:0050789;regulation of biological process;1.59374437189797e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.63026760894599e-09!GO:0016192;vesicle-mediated transport;1.81648154393415e-09!GO:0006461;protein complex assembly;1.82070579815405e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.43515590720351e-09!GO:0016740;transferase activity;2.61679268336354e-09!GO:0003697;single-stranded DNA binding;3.19065532703563e-09!GO:0043566;structure-specific DNA binding;3.21116319167457e-09!GO:0030532;small nuclear ribonucleoprotein complex;3.56986465888388e-09!GO:0051329;interphase of mitotic cell cycle;4.4717083868712e-09!GO:0006334;nucleosome assembly;4.97682389120433e-09!GO:0051325;interphase;5.67325517749295e-09!GO:0006163;purine nucleotide metabolic process;5.7590445153815e-09!GO:0031497;chromatin assembly;8.57562723112951e-09!GO:0008639;small protein conjugating enzyme activity;9.06954718885452e-09!GO:0009259;ribonucleotide metabolic process;1.06777714789204e-08!GO:0005794;Golgi apparatus;1.28243846467164e-08!GO:0009056;catabolic process;1.46299209655866e-08!GO:0006164;purine nucleotide biosynthetic process;1.53061359154792e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.69643264155272e-08!GO:0004842;ubiquitin-protein ligase activity;1.72123036654568e-08!GO:0003713;transcription coactivator activity;1.76671570568299e-08!GO:0019787;small conjugating protein ligase activity;2.60041226715733e-08!GO:0005789;endoplasmic reticulum membrane;3.1863844493753e-08!GO:0015630;microtubule cytoskeleton;3.3428495302872e-08!GO:0005813;centrosome;3.67222163874502e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.20721528564019e-08!GO:0010468;regulation of gene expression;4.90331697160887e-08!GO:0000775;chromosome, pericentric region;5.24425311468549e-08!GO:0009060;aerobic respiration;5.38828116785624e-08!GO:0009260;ribonucleotide biosynthetic process;6.97536314019503e-08!GO:0009150;purine ribonucleotide metabolic process;7.35175917493531e-08!GO:0005815;microtubule organizing center;7.90955600514104e-08!GO:0003677;DNA binding;8.87544617294777e-08!GO:0000075;cell cycle checkpoint;1.02076889334941e-07!GO:0000245;spliceosome assembly;1.09009497156136e-07!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.31139914642447e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.44290983087296e-07!GO:0032774;RNA biosynthetic process;1.47055252884053e-07!GO:0005667;transcription factor complex;1.67395699616232e-07!GO:0016881;acid-amino acid ligase activity;1.94886676448929e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.01405974946058e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.09240792811343e-07!GO:0006351;transcription, DNA-dependent;2.11085559003044e-07!GO:0016363;nuclear matrix;2.64085209068322e-07!GO:0051170;nuclear import;2.78475408218959e-07!GO:0007051;spindle organization and biogenesis;3.01904696632328e-07!GO:0045333;cellular respiration;3.5260650468927e-07!GO:0006310;DNA recombination;3.68125865812561e-07!GO:0051246;regulation of protein metabolic process;4.08513936638792e-07!GO:0048523;negative regulation of cellular process;4.67294183036045e-07!GO:0016563;transcription activator activity;4.6842308961648e-07!GO:0019829;cation-transporting ATPase activity;4.79531457957149e-07!GO:0003899;DNA-directed RNA polymerase activity;5.1746139712599e-07!GO:0032446;protein modification by small protein conjugation;5.54292148010682e-07!GO:0006793;phosphorus metabolic process;5.74447854971247e-07!GO:0006796;phosphate metabolic process;5.74447854971247e-07!GO:0016787;hydrolase activity;5.76840499413035e-07!GO:0006606;protein import into nucleus;6.31070829956152e-07!GO:0006950;response to stress;6.59775995774092e-07!GO:0015986;ATP synthesis coupled proton transport;6.98599133933145e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.98599133933145e-07!GO:0005793;ER-Golgi intermediate compartment;7.06623758025157e-07!GO:0003729;mRNA binding;8.07214296102459e-07!GO:0042981;regulation of apoptosis;8.63537502487727e-07!GO:0003724;RNA helicase activity;8.98232133026793e-07!GO:0051427;hormone receptor binding;1.00289869301033e-06!GO:0009108;coenzyme biosynthetic process;1.06878497641439e-06!GO:0006401;RNA catabolic process;1.07378875894556e-06!GO:0007005;mitochondrion organization and biogenesis;1.15356777729265e-06!GO:0006099;tricarboxylic acid cycle;1.16594281190928e-06!GO:0046356;acetyl-CoA catabolic process;1.16594281190928e-06!GO:0006352;transcription initiation;1.23819640473169e-06!GO:0043067;regulation of programmed cell death;1.25085845722721e-06!GO:0016567;protein ubiquitination;1.2567879427014e-06!GO:0065007;biological regulation;1.27723423405066e-06!GO:0005657;replication fork;1.42743545095575e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.54200608956744e-06!GO:0016310;phosphorylation;1.63480670898703e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.80617830513673e-06!GO:0006084;acetyl-CoA metabolic process;1.85329210875858e-06!GO:0009141;nucleoside triphosphate metabolic process;1.90204753564485e-06!GO:0009055;electron carrier activity;2.08548858945417e-06!GO:0009142;nucleoside triphosphate biosynthetic process;2.08548858945417e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.08548858945417e-06!GO:0035257;nuclear hormone receptor binding;2.14058911454636e-06!GO:0006302;double-strand break repair;2.15069978455148e-06!GO:0045259;proton-transporting ATP synthase complex;2.20845727743723e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.25186409519214e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.39744193485101e-06!GO:0008094;DNA-dependent ATPase activity;2.64893739593671e-06!GO:0008270;zinc ion binding;2.68715871263374e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.22756225152434e-06!GO:0009144;purine nucleoside triphosphate metabolic process;3.22756225152434e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.87452900289875e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.87452900289875e-06!GO:0000151;ubiquitin ligase complex;4.13578562283616e-06!GO:0048475;coated membrane;4.37158298754603e-06!GO:0030117;membrane coat;4.37158298754603e-06!GO:0006402;mRNA catabolic process;4.79621250989767e-06!GO:0051168;nuclear export;5.65840196548342e-06!GO:0045449;regulation of transcription;5.70148777376803e-06!GO:0006754;ATP biosynthetic process;5.8988717638511e-06!GO:0006753;nucleoside phosphate metabolic process;5.8988717638511e-06!GO:0006613;cotranslational protein targeting to membrane;6.01518868319698e-06!GO:0046034;ATP metabolic process;6.53547892566759e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.07606253281665e-06!GO:0007059;chromosome segregation;8.43197209417593e-06!GO:0003682;chromatin binding;9.79771150548251e-06!GO:0016469;proton-transporting two-sector ATPase complex;9.95780886944418e-06!GO:0048519;negative regulation of biological process;1.03350056965439e-05!GO:0044452;nucleolar part;1.03810619741049e-05!GO:0003690;double-stranded DNA binding;1.05500918639328e-05!GO:0009109;coenzyme catabolic process;1.05623601503836e-05!GO:0043623;cellular protein complex assembly;1.18644446210465e-05!GO:0045786;negative regulation of progression through cell cycle;1.43597400135197e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.45858400279575e-05!GO:0019899;enzyme binding;1.49026878581048e-05!GO:0006752;group transfer coenzyme metabolic process;1.82882592211912e-05!GO:0005768;endosome;1.85179507237591e-05!GO:0046914;transition metal ion binding;2.00349874393743e-05!GO:0009117;nucleotide metabolic process;2.14021212894279e-05!GO:0008654;phospholipid biosynthetic process;2.3502176739107e-05!GO:0019752;carboxylic acid metabolic process;2.58542543415937e-05!GO:0006082;organic acid metabolic process;3.12352326512316e-05!GO:0043021;ribonucleoprotein binding;3.47538131241289e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.89079438346384e-05!GO:0006338;chromatin remodeling;4.43037939525239e-05!GO:0004527;exonuclease activity;4.43037939525239e-05!GO:0008033;tRNA processing;4.55667661718715e-05!GO:0006355;regulation of transcription, DNA-dependent;5.25210560527023e-05!GO:0030120;vesicle coat;5.31621555988822e-05!GO:0030662;coated vesicle membrane;5.31621555988822e-05!GO:0051187;cofactor catabolic process;5.43637815540414e-05!GO:0000776;kinetochore;5.43637815540414e-05!GO:0004298;threonine endopeptidase activity;5.46441807669191e-05!GO:0006383;transcription from RNA polymerase III promoter;5.7813148992013e-05!GO:0005770;late endosome;6.0553064989441e-05!GO:0003678;DNA helicase activity;6.54179914271035e-05!GO:0016853;isomerase activity;6.88751944295199e-05!GO:0043069;negative regulation of programmed cell death;6.97725461576368e-05!GO:0005762;mitochondrial large ribosomal subunit;7.03881561257583e-05!GO:0000315;organellar large ribosomal subunit;7.03881561257583e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;7.22327081180209e-05!GO:0007088;regulation of mitosis;7.48920123197391e-05!GO:0008186;RNA-dependent ATPase activity;8.85883057443163e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;8.92261743615329e-05!GO:0043066;negative regulation of apoptosis;9.15861680684887e-05!GO:0051052;regulation of DNA metabolic process;9.39404293251495e-05!GO:0008168;methyltransferase activity;9.39404293251495e-05!GO:0016741;transferase activity, transferring one-carbon groups;9.95259874011681e-05!GO:0004518;nuclease activity;0.000110255077815538!GO:0003924;GTPase activity;0.000114732629548869!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000116371787134947!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000119821688867044!GO:0046483;heterocycle metabolic process;0.00012561720178991!GO:0006612;protein targeting to membrane;0.000146857265939458!GO:0030880;RNA polymerase complex;0.000151108419081612!GO:0000082;G1/S transition of mitotic cell cycle;0.000154839508713636!GO:0000059;protein import into nucleus, docking;0.000156966758473773!GO:0000314;organellar small ribosomal subunit;0.000156966758473773!GO:0005763;mitochondrial small ribosomal subunit;0.000156966758473773!GO:0044431;Golgi apparatus part;0.000159035494554759!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000159868806989415!GO:0007052;mitotic spindle organization and biogenesis;0.000160974323591237!GO:0007093;mitotic cell cycle checkpoint;0.000165280912260372!GO:0006405;RNA export from nucleus;0.000165377116224532!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000166215022334012!GO:0016859;cis-trans isomerase activity;0.000193830847705365!GO:0016564;transcription repressor activity;0.000208355312407758!GO:0000786;nucleosome;0.000226916152603121!GO:0006916;anti-apoptosis;0.000227607614126199!GO:0031072;heat shock protein binding;0.000238686987496896!GO:0019843;rRNA binding;0.000250146834578519!GO:0043681;protein import into mitochondrion;0.000250146834578519!GO:0016251;general RNA polymerase II transcription factor activity;0.000258704056267005!GO:0004004;ATP-dependent RNA helicase activity;0.000262060210747423!GO:0003714;transcription corepressor activity;0.000262188313672042!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000265173798371994!GO:0000428;DNA-directed RNA polymerase complex;0.000265173798371994!GO:0005525;GTP binding;0.000269327171510522!GO:0007243;protein kinase cascade;0.000270747395036244!GO:0003684;damaged DNA binding;0.00031599853741853!GO:0031324;negative regulation of cellular metabolic process;0.000372384357340964!GO:0031982;vesicle;0.000379944590685516!GO:0000922;spindle pole;0.000385306539717704!GO:0006367;transcription initiation from RNA polymerase II promoter;0.000405020748271127!GO:0031968;organelle outer membrane;0.000414040892365258!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000419103699233845!GO:0006520;amino acid metabolic process;0.00044171442742435!GO:0030521;androgen receptor signaling pathway;0.000471727406563939!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000494968302145896!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000495358667457644!GO:0051252;regulation of RNA metabolic process;0.000499332581056241!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000502961852751065!GO:0007006;mitochondrial membrane organization and biogenesis;0.000523097999245853!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00054229473636417!GO:0047485;protein N-terminus binding;0.000571379608518289!GO:0006626;protein targeting to mitochondrion;0.000571379608518289!GO:0019867;outer membrane;0.00058449714795822!GO:0032200;telomere organization and biogenesis;0.000590994413489295!GO:0000723;telomere maintenance;0.000590994413489295!GO:0031988;membrane-bound vesicle;0.000630670871744926!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000633216405512395!GO:0005741;mitochondrial outer membrane;0.00064730087272706!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00074108882427217!GO:0032508;DNA duplex unwinding;0.000761312032126106!GO:0032392;DNA geometric change;0.000761312032126106!GO:0005791;rough endoplasmic reticulum;0.000776844431355275!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000776844431355275!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.000780155206636947!GO:0051087;chaperone binding;0.000834155196121826!GO:0016491;oxidoreductase activity;0.000925211874465002!GO:0044440;endosomal part;0.00094959597054864!GO:0010008;endosome membrane;0.00094959597054864!GO:0031410;cytoplasmic vesicle;0.00094959597054864!GO:0006268;DNA unwinding during replication;0.000967346329366793!GO:0006091;generation of precursor metabolites and energy;0.000981072167106944!GO:0045454;cell redox homeostasis;0.000991838716526927!GO:0006839;mitochondrial transport;0.00109229373235749!GO:0005684;U2-dependent spliceosome;0.00110012735894852!GO:0000049;tRNA binding;0.00114798544194083!GO:0000096;sulfur amino acid metabolic process;0.00115407763579463!GO:0006779;porphyrin biosynthetic process;0.00115407763579463!GO:0033014;tetrapyrrole biosynthetic process;0.00115407763579463!GO:0048500;signal recognition particle;0.00122577716177966!GO:0005876;spindle microtubule;0.00124196808513692!GO:0008610;lipid biosynthetic process;0.00124743603235466!GO:0005798;Golgi-associated vesicle;0.00127046767340617!GO:0005885;Arp2/3 protein complex;0.00127046767340617!GO:0046966;thyroid hormone receptor binding;0.00128185193567588!GO:0006414;translational elongation;0.00128762898908396!GO:0009892;negative regulation of metabolic process;0.00129655510194301!GO:0048471;perinuclear region of cytoplasm;0.00131202885619429!GO:0043488;regulation of mRNA stability;0.00131280189181646!GO:0043487;regulation of RNA stability;0.00131280189181646!GO:0032984;macromolecular complex disassembly;0.00136224761778107!GO:0005637;nuclear inner membrane;0.00136995169801409!GO:0005048;signal sequence binding;0.00142261072485421!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00151433527358192!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00155182096654438!GO:0065009;regulation of a molecular function;0.00155182096654438!GO:0032561;guanyl ribonucleotide binding;0.00158053204381652!GO:0019001;guanyl nucleotide binding;0.00158053204381652!GO:0016023;cytoplasmic membrane-bound vesicle;0.00159861697489226!GO:0005788;endoplasmic reticulum lumen;0.00160047060545662!GO:0006270;DNA replication initiation;0.00162743263611673!GO:0046467;membrane lipid biosynthetic process;0.00171880297712588!GO:0030867;rough endoplasmic reticulum membrane;0.00172045447293492!GO:0030518;steroid hormone receptor signaling pathway;0.00176199373913939!GO:0006417;regulation of translation;0.00185857448751839!GO:0005669;transcription factor TFIID complex;0.00191782096246018!GO:0051920;peroxiredoxin activity;0.00200330506615506!GO:0032259;methylation;0.00200897413932436!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00204068242773957!GO:0015399;primary active transmembrane transporter activity;0.00204068242773957!GO:0003711;transcription elongation regulator activity;0.00225223967654497!GO:0046474;glycerophospholipid biosynthetic process;0.00226915056155217!GO:0006783;heme biosynthetic process;0.00230488292121129!GO:0043414;biopolymer methylation;0.00231597734029371!GO:0009165;nucleotide biosynthetic process;0.00237522890446273!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00242026652906411!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00242026652906411!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00242026652906411!GO:0015036;disulfide oxidoreductase activity;0.00243167424060115!GO:0004576;oligosaccharyl transferase activity;0.00243167424060115!GO:0015980;energy derivation by oxidation of organic compounds;0.00246767782251369!GO:0006289;nucleotide-excision repair;0.00246833931623573!GO:0043241;protein complex disassembly;0.00250278426781108!GO:0000139;Golgi membrane;0.00257219900750043!GO:0006275;regulation of DNA replication;0.00293269431107218!GO:0008276;protein methyltransferase activity;0.0029740700220062!GO:0045045;secretory pathway;0.00297507762696567!GO:0030218;erythrocyte differentiation;0.0029854306072334!GO:0006730;one-carbon compound metabolic process;0.00307135759969176!GO:0042393;histone binding;0.00307135759969176!GO:0031570;DNA integrity checkpoint;0.00335204278747807!GO:0006144;purine base metabolic process;0.00343848013406184!GO:0004674;protein serine/threonine kinase activity;0.00344337548414277!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00345058024088884!GO:0045047;protein targeting to ER;0.00345058024088884!GO:0007050;cell cycle arrest;0.00351441706464387!GO:0008250;oligosaccharyl transferase complex;0.00364786193574457!GO:0031124;mRNA 3'-end processing;0.00364786193574457!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0037788277385341!GO:0000228;nuclear chromosome;0.00388732028451145!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00390212198967168!GO:0016584;nucleosome positioning;0.00397747428190759!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00400296296657626!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00400296296657626!GO:0016481;negative regulation of transcription;0.00402165524729613!GO:0008632;apoptotic program;0.00403241437962803!GO:0043624;cellular protein complex disassembly;0.00406796412539891!GO:0022890;inorganic cation transmembrane transporter activity;0.00408871745092303!GO:0008312;7S RNA binding;0.00410574798438929!GO:0000819;sister chromatid segregation;0.00412208061020322!GO:0015992;proton transport;0.00417547403947073!GO:0022411;cellular component disassembly;0.00420679682190832!GO:0006891;intra-Golgi vesicle-mediated transport;0.00433709160094845!GO:0008139;nuclear localization sequence binding;0.00441720870769611!GO:0051540;metal cluster binding;0.00455699231825602!GO:0051536;iron-sulfur cluster binding;0.00455699231825602!GO:0006778;porphyrin metabolic process;0.0046357458257432!GO:0033013;tetrapyrrole metabolic process;0.0046357458257432!GO:0043596;nuclear replication fork;0.00490222995380695!GO:0006818;hydrogen transport;0.00490222995380695!GO:0006595;polyamine metabolic process;0.0049794693584713!GO:0005769;early endosome;0.00523962665024399!GO:0035258;steroid hormone receptor binding;0.00524470728377322!GO:0046489;phosphoinositide biosynthetic process;0.00525561178871622!GO:0030118;clathrin coat;0.00546753097037535!GO:0000725;recombinational repair;0.00546753097037535!GO:0000724;double-strand break repair via homologous recombination;0.00546753097037535!GO:0008047;enzyme activator activity;0.0055199859811316!GO:0031252;leading edge;0.00553560963893389!GO:0006519;amino acid and derivative metabolic process;0.00564375907591718!GO:0051789;response to protein stimulus;0.0057165801118705!GO:0006986;response to unfolded protein;0.0057165801118705!GO:0032039;integrator complex;0.00590155413741442!GO:0000339;RNA cap binding;0.00592952245938097!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00597668481395309!GO:0000287;magnesium ion binding;0.00597668481395309!GO:0008408;3'-5' exonuclease activity;0.00605673282193768!GO:0006607;NLS-bearing substrate import into nucleus;0.00618685835843612!GO:0006650;glycerophospholipid metabolic process;0.00621811418400742!GO:0016746;transferase activity, transferring acyl groups;0.00643760475734932!GO:0009451;RNA modification;0.00646746344932707!GO:0008234;cysteine-type peptidase activity;0.00686026776202934!GO:0006376;mRNA splice site selection;0.00689708062549905!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00689708062549905!GO:0000070;mitotic sister chromatid segregation;0.00721604525993899!GO:0006406;mRNA export from nucleus;0.00731167091013775!GO:0005758;mitochondrial intermembrane space;0.00739694038027001!GO:0006284;base-excision repair;0.00747821001441453!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.00751775400694072!GO:0040029;regulation of gene expression, epigenetic;0.00759702891806042!GO:0031970;organelle envelope lumen;0.00761341038256324!GO:0018196;peptidyl-asparagine modification;0.00763724414699663!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00763724414699663!GO:0003746;translation elongation factor activity;0.00774915873445415!GO:0031326;regulation of cellular biosynthetic process;0.00778557664668506!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00783240615385883!GO:0008415;acyltransferase activity;0.00784198728092657!GO:0043492;ATPase activity, coupled to movement of substances;0.00784811569899249!GO:0051053;negative regulation of DNA metabolic process;0.00787034121786809!GO:0042802;identical protein binding;0.00795523136893407!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00799991969325886!GO:0030384;phosphoinositide metabolic process;0.00822182971130356!GO:0005773;vacuole;0.00822182971130356!GO:0004003;ATP-dependent DNA helicase activity;0.00822182971130356!GO:0000781;chromosome, telomeric region;0.00824041802937368!GO:0030522;intracellular receptor-mediated signaling pathway;0.00826344583928486!GO:0016197;endosome transport;0.00828155934756688!GO:0030134;ER to Golgi transport vesicle;0.00828279394224502!GO:0031577;spindle checkpoint;0.00841606340409161!GO:0022415;viral reproductive process;0.00846540061130155!GO:0006611;protein export from nucleus;0.00888432266063092!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0090130301718246!GO:0000323;lytic vacuole;0.00907449002808386!GO:0005764;lysosome;0.00907449002808386!GO:0030119;AP-type membrane coat adaptor complex;0.00925164564433164!GO:0007017;microtubule-based process;0.00926694007769191!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00926694007769191!GO:0051287;NAD binding;0.00935016660435731!GO:0044450;microtubule organizing center part;0.00935016660435731!GO:0042809;vitamin D receptor binding;0.0094087321734986!GO:0005874;microtubule;0.00963757994407684!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00976881503034385!GO:0007004;telomere maintenance via telomerase;0.00983426793691583!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00983426793691583!GO:0016407;acetyltransferase activity;0.00988740572760863!GO:0009112;nucleobase metabolic process;0.00993066675080755!GO:0042168;heme metabolic process;0.00994778593548304!GO:0007021;tubulin folding;0.00999903911046006!GO:0051539;4 iron, 4 sulfur cluster binding;0.0100595185869699!GO:0031123;RNA 3'-end processing;0.0105125262564859!GO:0045815;positive regulation of gene expression, epigenetic;0.0107729145685653!GO:0000097;sulfur amino acid biosynthetic process;0.0109511207456279!GO:0043022;ribosome binding;0.0110281292015896!GO:0030127;COPII vesicle coat;0.0111106287218189!GO:0012507;ER to Golgi transport vesicle membrane;0.0111106287218189!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0112044073863064!GO:0016408;C-acyltransferase activity;0.0112386645060471!GO:0000077;DNA damage checkpoint;0.0112540489558795!GO:0043065;positive regulation of apoptosis;0.0113492249840166!GO:0006378;mRNA polyadenylation;0.0114654947534944!GO:0005096;GTPase activator activity;0.0115001639412556!GO:0030131;clathrin adaptor complex;0.0115275818202678!GO:0048146;positive regulation of fibroblast proliferation;0.0116148213209562!GO:0005832;chaperonin-containing T-complex;0.0118493282887587!GO:0000086;G2/M transition of mitotic cell cycle;0.011969817837751!GO:0044454;nuclear chromosome part;0.0122063375672182!GO:0009081;branched chain family amino acid metabolic process;0.0125969603196473!GO:0006643;membrane lipid metabolic process;0.0127917869369771!GO:0016790;thiolester hydrolase activity;0.0132346113453751!GO:0000178;exosome (RNase complex);0.0132389176695749!GO:0050790;regulation of catalytic activity;0.0133701222786188!GO:0016180;snRNA processing;0.0135067979718067!GO:0016073;snRNA metabolic process;0.0135067979718067!GO:0030663;COPI coated vesicle membrane;0.0137128129179793!GO:0030126;COPI vesicle coat;0.0137128129179793!GO:0043601;nuclear replisome;0.0137854818375464!GO:0030894;replisome;0.0137854818375464!GO:0030658;transport vesicle membrane;0.0138129944857631!GO:0043068;positive regulation of programmed cell death;0.0144955284808819!GO:0015631;tubulin binding;0.0149218514855006!GO:0016585;chromatin remodeling complex;0.0154590048441689!GO:0000152;nuclear ubiquitin ligase complex;0.0154590048441689!GO:0019783;small conjugating protein-specific protease activity;0.015838446531911!GO:0033116;ER-Golgi intermediate compartment membrane;0.015838446531911!GO:0004843;ubiquitin-specific protease activity;0.0160792353173145!GO:0008097;5S rRNA binding;0.0163322891286692!GO:0000726;non-recombinational repair;0.0167315923617044!GO:0031902;late endosome membrane;0.0167769219484082!GO:0006360;transcription from RNA polymerase I promoter;0.0168644713149361!GO:0000792;heterochromatin;0.0168905345866178!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.017191287191157!GO:0009067;aspartate family amino acid biosynthetic process;0.0172336511571517!GO:0006979;response to oxidative stress;0.0181745089610828!GO:0033673;negative regulation of kinase activity;0.0183296774535218!GO:0006469;negative regulation of protein kinase activity;0.0183296774535218!GO:0016272;prefoldin complex;0.018345872460109!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0187580370895882!GO:0006917;induction of apoptosis;0.0192038849854715!GO:0048144;fibroblast proliferation;0.0193172892598541!GO:0048145;regulation of fibroblast proliferation;0.0193172892598541!GO:0051235;maintenance of localization;0.0202642141483298!GO:0006278;RNA-dependent DNA replication;0.0202833379895597!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0205158744473944!GO:0003702;RNA polymerase II transcription factor activity;0.0207890989523245!GO:0004177;aminopeptidase activity;0.0208100680280276!GO:0031625;ubiquitin protein ligase binding;0.0208706251750046!GO:0044448;cell cortex part;0.0208925719341969!GO:0035035;histone acetyltransferase binding;0.0214258670438165!GO:0003887;DNA-directed DNA polymerase activity;0.0215223782560117!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0218113470929275!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0219704424174787!GO:0004221;ubiquitin thiolesterase activity;0.022296033846533!GO:0032940;secretion by cell;0.022296033846533!GO:0030176;integral to endoplasmic reticulum membrane;0.0227349737632067!GO:0000793;condensed chromosome;0.0228057640572357!GO:0022406;membrane docking;0.0232422404277237!GO:0048278;vesicle docking;0.0232422404277237!GO:0006400;tRNA modification;0.023850772349205!GO:0006220;pyrimidine nucleotide metabolic process;0.0239181191922514!GO:0035267;NuA4 histone acetyltransferase complex;0.0240118377603572!GO:0051348;negative regulation of transferase activity;0.0240695932377443!GO:0050681;androgen receptor binding;0.024239728805988!GO:0009889;regulation of biosynthetic process;0.0243034540722073!GO:0008180;signalosome;0.0243072987344357!GO:0016126;sterol biosynthetic process;0.0245541105326643!GO:0012502;induction of programmed cell death;0.0245541105326643!GO:0005652;nuclear lamina;0.0246004055485046!GO:0042770;DNA damage response, signal transduction;0.0247984863015098!GO:0030137;COPI-coated vesicle;0.0252465381587184!GO:0004532;exoribonuclease activity;0.0253044032760892!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0253044032760892!GO:0048487;beta-tubulin binding;0.0254573097044948!GO:0005487;nucleocytoplasmic transporter activity;0.0254573097044948!GO:0042054;histone methyltransferase activity;0.0254573097044948!GO:0003756;protein disulfide isomerase activity;0.0254573097044948!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0254573097044948!GO:0008143;poly(A) binding;0.0257881287954432!GO:0005095;GTPase inhibitor activity;0.0257881287954432!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0261021395709821!GO:0006633;fatty acid biosynthetic process;0.0262456567980192!GO:0042158;lipoprotein biosynthetic process;0.0265267194627576!GO:0044255;cellular lipid metabolic process;0.0267765618780715!GO:0046519;sphingoid metabolic process;0.0268226508233561!GO:0006497;protein amino acid lipidation;0.0268226508233561!GO:0050662;coenzyme binding;0.0269727230428872!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0277644809742556!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0279059731511018!GO:0005521;lamin binding;0.0280823622138373!GO:0009066;aspartate family amino acid metabolic process;0.0282193456032137!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0282193456032137!GO:0015002;heme-copper terminal oxidase activity;0.0282193456032137!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0282193456032137!GO:0004129;cytochrome-c oxidase activity;0.0282193456032137!GO:0007010;cytoskeleton organization and biogenesis;0.0287667276165718!GO:0009303;rRNA transcription;0.0289972058311773!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0290309458185215!GO:0000303;response to superoxide;0.0291768457114505!GO:0006672;ceramide metabolic process;0.0294083431979832!GO:0000118;histone deacetylase complex;0.0300208444330376!GO:0009124;nucleoside monophosphate biosynthetic process;0.0302419368512182!GO:0009123;nucleoside monophosphate metabolic process;0.0302419368512182!GO:0003725;double-stranded RNA binding;0.030322628935459!GO:0030660;Golgi-associated vesicle membrane;0.0304760331247379!GO:0019079;viral genome replication;0.0305253420687843!GO:0019372;lipoxygenase pathway;0.0308725471117499!GO:0005680;anaphase-promoting complex;0.0315786475579353!GO:0009967;positive regulation of signal transduction;0.0316388491962889!GO:0007264;small GTPase mediated signal transduction;0.0322063606467975!GO:0000119;mediator complex;0.0326416455075712!GO:0006506;GPI anchor biosynthetic process;0.0328696461248264!GO:0043189;H4/H2A histone acetyltransferase complex;0.0328782246880138!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0330507226171339!GO:0045039;protein import into mitochondrial inner membrane;0.0330507226171339!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.033260848648748!GO:0006596;polyamine biosynthetic process;0.0332794085935633!GO:0005938;cell cortex;0.0335227504140607!GO:0008156;negative regulation of DNA replication;0.0335894848125362!GO:0030174;regulation of DNA replication initiation;0.0336176586965505!GO:0000910;cytokinesis;0.0336825210873938!GO:0043284;biopolymer biosynthetic process;0.0340423375270984!GO:0018193;peptidyl-amino acid modification;0.0347162770076177!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0347163926866148!GO:0004659;prenyltransferase activity;0.0348184787519547!GO:0030695;GTPase regulator activity;0.0360457904594683!GO:0006892;post-Golgi vesicle-mediated transport;0.0360457904594683!GO:0006695;cholesterol biosynthetic process;0.03615060455441!GO:0051338;regulation of transferase activity;0.03615060455441!GO:0030508;thiol-disulfide exchange intermediate activity;0.0366616714462002!GO:0044438;microbody part;0.0367643803561753!GO:0044439;peroxisomal part;0.0367643803561753!GO:0016279;protein-lysine N-methyltransferase activity;0.0371363710616094!GO:0018024;histone-lysine N-methyltransferase activity;0.0371363710616094!GO:0016278;lysine N-methyltransferase activity;0.0371363710616094!GO:0008629;induction of apoptosis by intracellular signals;0.0371424835379545!GO:0004239;methionyl aminopeptidase activity;0.0371424835379545!GO:0006644;phospholipid metabolic process;0.038528302051675!GO:0005784;translocon complex;0.0393695436555456!GO:0008536;Ran GTPase binding;0.0394212157436489!GO:0008538;proteasome activator activity;0.0398446300633071!GO:0017134;fibroblast growth factor binding;0.040063852530747!GO:0008652;amino acid biosynthetic process;0.0401166568165514!GO:0017056;structural constituent of nuclear pore;0.0401166568165514!GO:0016605;PML body;0.0403544592126229!GO:0005869;dynactin complex;0.0403544592126229!GO:0009113;purine base biosynthetic process;0.0406312508923244!GO:0009116;nucleoside metabolic process;0.0413229239085767!GO:0004540;ribonuclease activity;0.0415811853751799!GO:0006904;vesicle docking during exocytosis;0.041669228750945!GO:0008287;protein serine/threonine phosphatase complex;0.0417058406922877!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0421725775622914!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0421725775622914!GO:0000123;histone acetyltransferase complex;0.0424950596161763!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0439723453632299!GO:0048037;cofactor binding;0.0445913182628125!GO:0005663;DNA replication factor C complex;0.0447600878755314!GO:0009083;branched chain family amino acid catabolic process;0.0451635833041664!GO:0031903;microbody membrane;0.0457307482690456!GO:0005778;peroxisomal membrane;0.0457307482690456!GO:0043549;regulation of kinase activity;0.045808639846901!GO:0060090;molecular adaptor activity;0.0459997114517683!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0461257806744414!GO:0043631;RNA polyadenylation;0.0469783606471824!GO:0042026;protein refolding;0.0472213448207476!GO:0045892;negative regulation of transcription, DNA-dependent;0.04757119112562!GO:0008017;microtubule binding;0.0485030848692758!GO:0031371;ubiquitin conjugating enzyme complex;0.0488802847474426!GO:0045947;negative regulation of translational initiation;0.0493006217517047!GO:0019901;protein kinase binding;0.0493529865181716 | |||
|sample_id=10409 | |sample_id=10409 | ||
|sample_note=machine failed, remainder reloaded, low amount | |sample_note=machine failed, remainder reloaded, low amount | ||
| Line 76: | Line 99: | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=GATA6:4.74112467725;NFIX:2.92022482079;ZNF148:2.74797890579;MYB:2.25055392093;POU2F1..3:2.07320105229;STAT1,3:2.02602105264;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.72651463777;ALX1:1.6633399753;E2F1..5:1.47509002129;NFY{A,B,C}:1.42114142995;FOX{I1,J2}:1.34608864985;STAT5{A,B}:1.3246922467;ELF1,2,4:1.2496375995;IKZF2:1.21927887603;YY1:1.15232753132;ZNF143:1.13786789572;NANOG{mouse}:1.0659820752;bHLH_family:1.04363783218;ELK1,4_GABP{A,B1}:0.893377840915;RBPJ:0.843120033436;EN1,2:0.809035982717;TLX2:0.786052741878;NRF1:0.769423381252;PAX8:0.764786712849;PBX1:0.74392680343;ZBTB16:0.740770775377;DMAP1_NCOR{1,2}_SMARC:0.702438344642;BREu{core}:0.683244789744;SOX{8,9,10}:0.658825872669;HBP1_HMGB_SSRP1_UBTF:0.62655787729;CRX:0.624542783997;NR5A1,2:0.618306938936;SPIB:0.612740318557;NKX2-1,4:0.611186339423;CUX2:0.587795929635;PAX6:0.582817622914;PITX1..3:0.544050669354;RUNX1..3:0.493047103966;AR:0.478284350873;AHR_ARNT_ARNT2:0.474743369368;PRRX1,2:0.459623997762;VSX1,2:0.458641068909;ETS1,2:0.449942733729;PAX3,7:0.438523000677;OCT4_SOX2{dimer}:0.411862042431;SPI1:0.411030746137;POU6F1:0.400134576925;HOXA9_MEIS1:0.385728719299;HSF1,2:0.36497933796;POU3F1..4:0.357792881878;FOXP1:0.353534376037;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.320160760472;EVI1:0.312194390005;TOPORS:0.29465692937;NR1H4:0.280028621673;AIRE:0.274954349781;HIF1A:0.242276079412;HOX{A5,B5}:0.236619033039;SMAD1..7,9:0.224024968821;RORA:0.204891854607;FOXN1:0.189059220122;PDX1:0.110547840075;GZF1:0.105299433836;SOX17:0.10294591118;NR6A1:0.0835026610817;POU5F1:0.0771209841053;HAND1,2:0.0745662888784;NKX2-3_NKX2-5:0.0655364903174;ATF5_CREB3:0.0166943144396;POU1F1:0.00128924104282;NANOG:0.00127951219917;FOXP3:0.00116509215603;CDX1,2,4:-0.0192388527416;SNAI1..3:-0.0552642186506;HOX{A4,D4}:-0.0628936913822;HOX{A6,A7,B6,B7}:-0.0705327511092;MYOD1:-0.0783718946412;PPARG:-0.111571783485;TEF:-0.11738078011;PAX4:-0.127304430033;LEF1_TCF7_TCF7L1,2:-0.127828073268;MTF1:-0.149303923967;NFE2:-0.150955082251;FOXQ1:-0.163321531188;SOX2:-0.177914201148;T:-0.184391611713;PAX2:-0.186077270501;NHLH1,2:-0.189442854513;TBP:-0.192030730501;ONECUT1,2:-0.208365871706;NKX6-1,2:-0.214461878426;DBP:-0.218668118019;NKX3-1:-0.233635246;ATF4:-0.24335218777;ARID5B:-0.247547758053;RXRA_VDR{dimer}:-0.254947301037;NFKB1_REL_RELA:-0.257581896483;HNF4A_NR2F1,2:-0.27080389272;TFDP1:-0.279361024264;SREBF1,2:-0.30287950164;FOXA2:-0.30824252533;ZNF238:-0.326081578118;RFX2..5_RFXANK_RFXAP:-0.335496128872;ZFP161:-0.33659075904;ZEB1:-0.342983496379;HES1:-0.345326495055;HNF1A:-0.346114571941;GFI1:-0.348240202834;TGIF1:-0.385120075138;STAT2,4,6:-0.458141958431;IRF1,2:-0.465559633894;HMGA1,2:-0.490608164936;RXR{A,B,G}:-0.503087297731;REST:-0.51046399219;XBP1:-0.511936625082;CREB1:-0.515735447723;SRF:-0.519829003355;GCM1,2:-0.523078026642;BACH2:-0.524427099456;ZNF423:-0.533965462569;LHX3,4:-0.55051669704;FOSL2:-0.576310133411;BPTF:-0.576341304578;ESRRA:-0.579586833628;MEF2{A,B,C,D}:-0.582063066607;MYBL2:-0.597078864297;FOXM1:-0.614027394166;IRF7:-0.616014975145;MED-1{core}:-0.630011908942;RFX1:-0.632501267818;RREB1:-0.636610399375;FOS_FOS{B,L1}_JUN{B,D}:-0.638488010236;TLX1..3_NFIC{dimer}:-0.669230924213;NFE2L2:-0.672024208091;ADNP_IRX_SIX_ZHX:-0.681957017067;FOX{D1,D2}:-0.689426388369;PRDM1:-0.694030173535;GTF2I:-0.701117840349;SOX5:-0.707338751221;TFAP4:-0.713505291145;FOX{F1,F2,J1}:-0.715828196569;MYFfamily:-0.74789445575;GATA4:-0.76496537213;IKZF1:-0.787216243595;HMX1:-0.787700096584;EP300:-0.806589056149;PAX5:-0.80732453287;SPZ1:-0.808033290839;NKX3-2:-0.81043311781;ZNF384:-0.813993115957;XCPE1{core}:-0.814843745727;ATF2:-0.837520893218;KLF4:-0.846585995074;FOXO1,3,4:-0.856452461131;NFE2L1:-0.868179427056;NFATC1..3:-0.868571090715;CDC5L:-0.868704196781;ZBTB6:-0.873523381432;GLI1..3:-0.874202983133;GTF2A1,2:-0.904493541544;CEBPA,B_DDIT3:-0.914566650054;HIC1:-0.916951991669;HLF:-0.93319887161;PATZ1:-0.94421996434;MZF1:-0.952735346727;FOXD3:-0.956803448559;TEAD1:-0.990102911559;UFEwm:-0.996145863117;NKX2-2,8:-1.00184347825;NFIL3:-1.01004458833;MAFB:-1.05035856051;LMO2:-1.09412287152;ZIC1..3:-1.09810508385;TFAP2{A,C}:-1.11180762399;EGR1..3:-1.13093047416;MTE{core}:-1.14992211104;TP53:-1.15557683208;TAL1_TCF{3,4,12}:-1.20985647955;TBX4,5:-1.22274531104;MAZ:-1.25995877245;SP1:-1.27324770825;GFI1B:-1.28517974055;TFAP2B:-1.28718339442;EBF1:-1.29115521066;ESR1:-1.32105826446;PAX1,9:-1.332856947;NR3C1:-1.39454477752;FOXL1:-1.40153829031;ALX4:-1.47097220825;JUN:-1.49627724228;ATF6:-1.64947588191;TFCP2:-1.94508327408 | |top_motifs=GATA6:4.74112467725;NFIX:2.92022482079;ZNF148:2.74797890579;MYB:2.25055392093;POU2F1..3:2.07320105229;STAT1,3:2.02602105264;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.72651463777;ALX1:1.6633399753;E2F1..5:1.47509002129;NFY{A,B,C}:1.42114142995;FOX{I1,J2}:1.34608864985;STAT5{A,B}:1.3246922467;ELF1,2,4:1.2496375995;IKZF2:1.21927887603;YY1:1.15232753132;ZNF143:1.13786789572;NANOG{mouse}:1.0659820752;bHLH_family:1.04363783218;ELK1,4_GABP{A,B1}:0.893377840915;RBPJ:0.843120033436;EN1,2:0.809035982717;TLX2:0.786052741878;NRF1:0.769423381252;PAX8:0.764786712849;PBX1:0.74392680343;ZBTB16:0.740770775377;DMAP1_NCOR{1,2}_SMARC:0.702438344642;BREu{core}:0.683244789744;SOX{8,9,10}:0.658825872669;HBP1_HMGB_SSRP1_UBTF:0.62655787729;CRX:0.624542783997;NR5A1,2:0.618306938936;SPIB:0.612740318557;NKX2-1,4:0.611186339423;CUX2:0.587795929635;PAX6:0.582817622914;PITX1..3:0.544050669354;RUNX1..3:0.493047103966;AR:0.478284350873;AHR_ARNT_ARNT2:0.474743369368;PRRX1,2:0.459623997762;VSX1,2:0.458641068909;ETS1,2:0.449942733729;PAX3,7:0.438523000677;OCT4_SOX2{dimer}:0.411862042431;SPI1:0.411030746137;POU6F1:0.400134576925;HOXA9_MEIS1:0.385728719299;HSF1,2:0.36497933796;POU3F1..4:0.357792881878;FOXP1:0.353534376037;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.320160760472;EVI1:0.312194390005;TOPORS:0.29465692937;NR1H4:0.280028621673;AIRE:0.274954349781;HIF1A:0.242276079412;HOX{A5,B5}:0.236619033039;SMAD1..7,9:0.224024968821;RORA:0.204891854607;FOXN1:0.189059220122;PDX1:0.110547840075;GZF1:0.105299433836;SOX17:0.10294591118;NR6A1:0.0835026610817;POU5F1:0.0771209841053;HAND1,2:0.0745662888784;NKX2-3_NKX2-5:0.0655364903174;ATF5_CREB3:0.0166943144396;POU1F1:0.00128924104282;NANOG:0.00127951219917;FOXP3:0.00116509215603;CDX1,2,4:-0.0192388527416;SNAI1..3:-0.0552642186506;HOX{A4,D4}:-0.0628936913822;HOX{A6,A7,B6,B7}:-0.0705327511092;MYOD1:-0.0783718946412;PPARG:-0.111571783485;TEF:-0.11738078011;PAX4:-0.127304430033;LEF1_TCF7_TCF7L1,2:-0.127828073268;MTF1:-0.149303923967;NFE2:-0.150955082251;FOXQ1:-0.163321531188;SOX2:-0.177914201148;T:-0.184391611713;PAX2:-0.186077270501;NHLH1,2:-0.189442854513;TBP:-0.192030730501;ONECUT1,2:-0.208365871706;NKX6-1,2:-0.214461878426;DBP:-0.218668118019;NKX3-1:-0.233635246;ATF4:-0.24335218777;ARID5B:-0.247547758053;RXRA_VDR{dimer}:-0.254947301037;NFKB1_REL_RELA:-0.257581896483;HNF4A_NR2F1,2:-0.27080389272;TFDP1:-0.279361024264;SREBF1,2:-0.30287950164;FOXA2:-0.30824252533;ZNF238:-0.326081578118;RFX2..5_RFXANK_RFXAP:-0.335496128872;ZFP161:-0.33659075904;ZEB1:-0.342983496379;HES1:-0.345326495055;HNF1A:-0.346114571941;GFI1:-0.348240202834;TGIF1:-0.385120075138;STAT2,4,6:-0.458141958431;IRF1,2:-0.465559633894;HMGA1,2:-0.490608164936;RXR{A,B,G}:-0.503087297731;REST:-0.51046399219;XBP1:-0.511936625082;CREB1:-0.515735447723;SRF:-0.519829003355;GCM1,2:-0.523078026642;BACH2:-0.524427099456;ZNF423:-0.533965462569;LHX3,4:-0.55051669704;FOSL2:-0.576310133411;BPTF:-0.576341304578;ESRRA:-0.579586833628;MEF2{A,B,C,D}:-0.582063066607;MYBL2:-0.597078864297;FOXM1:-0.614027394166;IRF7:-0.616014975145;MED-1{core}:-0.630011908942;RFX1:-0.632501267818;RREB1:-0.636610399375;FOS_FOS{B,L1}_JUN{B,D}:-0.638488010236;TLX1..3_NFIC{dimer}:-0.669230924213;NFE2L2:-0.672024208091;ADNP_IRX_SIX_ZHX:-0.681957017067;FOX{D1,D2}:-0.689426388369;PRDM1:-0.694030173535;GTF2I:-0.701117840349;SOX5:-0.707338751221;TFAP4:-0.713505291145;FOX{F1,F2,J1}:-0.715828196569;MYFfamily:-0.74789445575;GATA4:-0.76496537213;IKZF1:-0.787216243595;HMX1:-0.787700096584;EP300:-0.806589056149;PAX5:-0.80732453287;SPZ1:-0.808033290839;NKX3-2:-0.81043311781;ZNF384:-0.813993115957;XCPE1{core}:-0.814843745727;ATF2:-0.837520893218;KLF4:-0.846585995074;FOXO1,3,4:-0.856452461131;NFE2L1:-0.868179427056;NFATC1..3:-0.868571090715;CDC5L:-0.868704196781;ZBTB6:-0.873523381432;GLI1..3:-0.874202983133;GTF2A1,2:-0.904493541544;CEBPA,B_DDIT3:-0.914566650054;HIC1:-0.916951991669;HLF:-0.93319887161;PATZ1:-0.94421996434;MZF1:-0.952735346727;FOXD3:-0.956803448559;TEAD1:-0.990102911559;UFEwm:-0.996145863117;NKX2-2,8:-1.00184347825;NFIL3:-1.01004458833;MAFB:-1.05035856051;LMO2:-1.09412287152;ZIC1..3:-1.09810508385;TFAP2{A,C}:-1.11180762399;EGR1..3:-1.13093047416;MTE{core}:-1.14992211104;TP53:-1.15557683208;TAL1_TCF{3,4,12}:-1.20985647955;TBX4,5:-1.22274531104;MAZ:-1.25995877245;SP1:-1.27324770825;GFI1B:-1.28517974055;TFAP2B:-1.28718339442;EBF1:-1.29115521066;ESR1:-1.32105826446;PAX1,9:-1.332856947;NR3C1:-1.39454477752;FOXL1:-1.40153829031;ALX4:-1.47097220825;JUN:-1.49627724228;ATF6:-1.64947588191;TFCP2:-1.94508327408 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10409-106B4;search_select_hide=table117:FF:10409-106B4 | |||
}} | }} | ||
Latest revision as of 13:59, 3 June 2020
| Name: | chronic myelogenous leukemia cell line:KU812 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10727 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10727
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10727
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.165 |
| 10 | 10 | 0.0148 |
| 100 | 100 | 0.704 |
| 101 | 101 | 0.236 |
| 102 | 102 | 0.528 |
| 103 | 103 | 0.721 |
| 104 | 104 | 0.559 |
| 105 | 105 | 0.492 |
| 106 | 106 | 0.217 |
| 107 | 107 | 0.502 |
| 108 | 108 | 0.374 |
| 109 | 109 | 0.0433 |
| 11 | 11 | 0.155 |
| 110 | 110 | 0.157 |
| 111 | 111 | 0.0557 |
| 112 | 112 | 0.0705 |
| 113 | 113 | 0.694 |
| 114 | 114 | 0.49 |
| 115 | 115 | 0.0834 |
| 116 | 116 | 0.974 |
| 117 | 117 | 0.0672 |
| 118 | 118 | 0.961 |
| 119 | 119 | 0.307 |
| 12 | 12 | 0.933 |
| 120 | 120 | 0.676 |
| 121 | 121 | 0.566 |
| 122 | 122 | 0.911 |
| 123 | 123 | 0.655 |
| 124 | 124 | 0.0181 |
| 125 | 125 | 0.567 |
| 126 | 126 | 0.32 |
| 127 | 127 | 0.494 |
| 128 | 128 | 0.25 |
| 129 | 129 | 0.865 |
| 13 | 13 | 0.00505 |
| 130 | 130 | 0.00929 |
| 131 | 131 | 0.423 |
| 132 | 132 | 0.407 |
| 133 | 133 | 0.18 |
| 134 | 134 | 0.841 |
| 135 | 135 | 0.514 |
| 136 | 136 | 0.0478 |
| 137 | 137 | 0.694 |
| 138 | 138 | 0.626 |
| 139 | 139 | 0.537 |
| 14 | 14 | 0.298 |
| 140 | 140 | 0.828 |
| 141 | 141 | 0.308 |
| 142 | 142 | 0.458 |
| 143 | 143 | 0.208 |
| 144 | 144 | 0.609 |
| 145 | 145 | 0.537 |
| 146 | 146 | 0.358 |
| 147 | 147 | 0.101 |
| 148 | 148 | 0.848 |
| 149 | 149 | 0.141 |
| 15 | 15 | 0.484 |
| 150 | 150 | 0.978 |
| 151 | 151 | 0.524 |
| 152 | 152 | 0.0466 |
| 153 | 153 | 0.847 |
| 154 | 154 | 0.989 |
| 155 | 155 | 0.0894 |
| 156 | 156 | 0.64 |
| 157 | 157 | 0.741 |
| 158 | 158 | 0.88 |
| 159 | 159 | 0.364 |
| 16 | 16 | 0.312 |
| 160 | 160 | 0.343 |
| 161 | 161 | 0.403 |
| 162 | 162 | 0.907 |
| 163 | 163 | 0.238 |
| 164 | 164 | 0.12 |
| 165 | 165 | 0.797 |
| 166 | 166 | 0.336 |
| 167 | 167 | 0.433 |
| 168 | 168 | 0.779 |
| 169 | 169 | 0.674 |
| 17 | 17 | 0.741 |
| 18 | 18 | 0.269 |
| 19 | 19 | 0.801 |
| 2 | 2 | 0.225 |
| 20 | 20 | 0.164 |
| 21 | 21 | 0.927 |
| 22 | 22 | 0.845 |
| 23 | 23 | 0.0146 |
| 24 | 24 | 0.554 |
| 25 | 25 | 0.185 |
| 26 | 26 | 0.504 |
| 27 | 27 | 0.499 |
| 28 | 28 | 0.492 |
| 29 | 29 | 0.0438 |
| 3 | 3 | 0.303 |
| 30 | 30 | 0.0201 |
| 31 | 31 | 0.175 |
| 32 | 32 | 0.0119 |
| 33 | 33 | 0.116 |
| 34 | 34 | 0.607 |
| 35 | 35 | 0.632 |
| 36 | 36 | 0.0225 |
| 37 | 37 | 0.479 |
| 38 | 38 | 0.863 |
| 39 | 39 | 0.489 |
| 4 | 4 | 0.0214 |
| 40 | 40 | 0.182 |
| 41 | 41 | 0.899 |
| 42 | 42 | 0.373 |
| 43 | 43 | 0.481 |
| 44 | 44 | 0.575 |
| 45 | 45 | 0.74 |
| 46 | 46 | 0.553 |
| 47 | 47 | 0.0966 |
| 48 | 48 | 0.191 |
| 49 | 49 | 0.084 |
| 5 | 5 | 0.57 |
| 50 | 50 | 0.998 |
| 51 | 51 | 0.638 |
| 52 | 52 | 0.265 |
| 53 | 53 | 0.164 |
| 54 | 54 | 0.586 |
| 55 | 55 | 0.351 |
| 56 | 56 | 0.98 |
| 57 | 57 | 0.487 |
| 58 | 58 | 0.169 |
| 59 | 59 | 0.878 |
| 6 | 6 | 0.959 |
| 60 | 60 | 0.753 |
| 61 | 61 | 0.342 |
| 62 | 62 | 0.29 |
| 63 | 63 | 0.981 |
| 64 | 64 | 0.427 |
| 65 | 65 | 0.328 |
| 66 | 66 | 2.6691e-9 |
| 67 | 67 | 0.802 |
| 68 | 68 | 0.257 |
| 69 | 69 | 0.866 |
| 7 | 7 | 0.0267 |
| 70 | 70 | 0.383 |
| 71 | 71 | 0.0707 |
| 72 | 72 | 0.865 |
| 73 | 73 | 0.453 |
| 74 | 74 | 0.542 |
| 75 | 75 | 0.0456 |
| 76 | 76 | 0.235 |
| 77 | 77 | 0.187 |
| 78 | 78 | 0.0323 |
| 79 | 79 | 0.0851 |
| 8 | 8 | 0.89 |
| 80 | 80 | 0.435 |
| 81 | 81 | 0.943 |
| 82 | 82 | 0.819 |
| 83 | 83 | 0.401 |
| 84 | 84 | 0.893 |
| 85 | 85 | 0.183 |
| 86 | 86 | 0.987 |
| 87 | 87 | 0.199 |
| 88 | 88 | 0.503 |
| 89 | 89 | 0.391 |
| 9 | 9 | 0.873 |
| 90 | 90 | 0.304 |
| 91 | 91 | 0.12 |
| 92 | 92 | 0.261 |
| 93 | 93 | 0.89 |
| 94 | 94 | 0.568 |
| 95 | 95 | 0.0322 |
| 96 | 96 | 0.941 |
| 97 | 97 | 0.341 |
| 98 | 98 | 0.322 |
| 99 | 99 | 0.471 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10727
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100732 KU-812 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
1036 (chronic leukemia)
8692 (myeloid leukemia)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0102580 (chronic myeloid leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0100740 (myeloid leukemia cell line sample)
0100732 (KU-812 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
