Personal tools

FF:10412-106B7: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(6 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005019
|DRA_sample_Accession=CAGE@SAMD00005019
|accession_numbers=CAGE;DRX007926;DRR008798;DRZ000223;DRZ001608
|HumanCAGEScanFiles=NCig10054;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/malignant%2520trichilemmal%2520cyst%2520cell%2520line%253aDJM-1.NCig10054.10412-106B7.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/malignant%2520trichilemmal%2520cyst%2520cell%2520line%253aDJM-1.NCig10054.10412-106B7.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/malignant%2520trichilemmal%2520cyst%2520cell%2520line%253aDJM-1.NCig10054.10412-106B7.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/malignant%2520trichilemmal%2520cyst%2520cell%2520line%253aDJM-1.NCig10054.10412-106B7.hg19.GCTATA.pairs.bed.gz
|accession_numbers=CAGE;DRX007926;DRR008798;DRZ000223;DRZ001608;DRZ011573;DRZ012958
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000255
Line 40: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/malignant%2520trichilemmal%2520cyst%2520cell%2520line%253aDJM-1.CNhs10730.10412-106B7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/malignant%2520trichilemmal%2520cyst%2520cell%2520line%253aDJM-1.CNhs10730.10412-106B7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/malignant%2520trichilemmal%2520cyst%2520cell%2520line%253aDJM-1.CNhs10730.10412-106B7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/malignant%2520trichilemmal%2520cyst%2520cell%2520line%253aDJM-1.CNhs10730.10412-106B7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/malignant%2520trichilemmal%2520cyst%2520cell%2520line%253aDJM-1.CNhs10730.10412-106B7.hg38.nobarcode.ctss.bed.gz
|id=FF:10412-106B7
|id=FF:10412-106B7
|is_a=EFO:0002091;;FF:0000210;;FF:0102024
|is_a=EFO:0002091;;FF:0000210;;FF:0102024
Line 45: Line 51:
|library_id=CNhs10730
|library_id=CNhs10730
|library_id_phase_based=2:CNhs10730
|library_id_phase_based=2:CNhs10730
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10412
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10412
|name=malignant trichilemmal cyst cell line:DJM-1
|name=malignant trichilemmal cyst cell line:DJM-1
|namespace=FANTOM5
|namespace=FANTOM5
Line 52: Line 62:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0.275319912053276,0,0,0,0,0.30432407088703,0,0.267022506692272,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0.62239084420464,0,0,-0.153323010348428,0,0,0,0,0,0.366684204705359,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.0215691736594172,0,0,0,0,0,0,0,0,0.082987162926022,0,0,0,0,0,-0.0436114919460079,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0111678059829884,0,0,0,0,0,0,-0.0379064118334975,0,0,0,0.155957541265887,-0.0325461665631552,0.107202184038856,0,0,0,0.259267121027721,0.147376219370674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178946318130815,0,0,0,0,0.113739844861982,0,0,0,0,0,0
|repeat_enrich_byfamily=0,0,0.275319912053276,0,0,0,0,0.30432407088703,0,0.267022506692272,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0.62239084420464,0,0,-0.153323010348428,0,0,0,0,0,0.366684204705359,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.0215691736594172,0,0,0,0,0,0,0,0,0.082987162926022,0,0,0,0,0,-0.0436114919460079,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0111678059829884,0,0,0,0,0,0,-0.0379064118334975,0,0,0,0.155957541265887,-0.0325461665631552,0.107202184038856,0,0,0,0.259267121027721,0.147376219370674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178946318130815,0,0,0,0,0.113739844861982,0,0,0,0,0,0
|repeat_enrich_byname=0,0,0,0,0.259267121027721,0,0,0,0,0,0,0,0,0,0,0,0.375211968919076,0,-0.259681850674296,0.213787329741955,0,0,-0.11608366480725,0,0.357302472265427,0,0,0,0,0,0,0,-0.128119866952565,0,-0.0504125515893149,0,0,0,0,0,-0.305472230898407,0,-0.0670558771106535,0.396297839896048,0,0,0,0,-0.037919618847616,0,-0.120879483793741,-0.0827201683234173,0.810611238118377,-0.377603005096438,0.208442707781818,0,0,0,-0.017669702624764,0.140139366363817,0,0,0.110541198734834,-0.074147434521803,0,0,-0.391044581551635,0,0.148367559399289,-0.141665866343397,0,0.0690289014906521,0,0,0,0,0,0,0,0,0,0,0,0.156910901256275,0.223651227427583,0,0,0.214404368077712,0,0.209735277576731,0,0,-0.373286155956567,0.0480865092640808,0,0.0442147419692822,0,-0.087985358932201,-0.154696408778073,0.251471300349377,-0.140213923250813,-0.147401849371139,-0.189981719549847,0,-0.246162303739518,-0.5718682610363,-0.0707459277633019,-0.0379064118334975,-0.0302447930437535,-0.20712325065158,0.228518029951433,0,0.214404368077712,-0.0775089264793031,0.0638427588667141,0,0.213057549059511,-0.275710346399061,0.160450000161022,-0.172364651400588,0.0018939234708015,-0.0143360349254864,-0.0346825073022756,-0.0395325284566706,-0.243032084818883,-0.0118356990579057,-0.0795966219364802,0,0,-0.0437597541719201,-0.282481095512694,-0.0480527216214354,0.288443157424256,0,0.0666623622955714,-0.0683442610773682,0,-0.0429939849231404,-0.449187482325803,0,0.0693734690913027,-0.221474758605985,0,0,0.214404368077712,0,0,-0.095718790794046,0.0111476810763858,0.124446910709882,0,0.131172439768584,0,-0.0219661682993104,0,0.180340584237399,0,0.0592283199041347,-0.103882344339436,0,0.0641296576660915,0.647047209906045,0.0494136717387094,-0.0650923331263104,0.155957541265887,0.319267709241285,-0.157740827643774,0.2370864619153,-0.431637392524799,0.0348903179245619,0.126277535602424,0,-0.88354475051838,0.438716444208323,0,-0.129558756043582,0,0.284750224187312,0,-0.454988940385621,0,-0.329326306560318,-0.54043375147324,-0.439289374580686,0.101093449776434,0,-0.37994757711864,0.180278984842108,0,-0.0579800050942682,-0.112503441017266,0.464642100973416,-0.150367083334639,0.441137830210187,-0.211650427864589,-0.0317872726403386,0,-0.32543805741624,0,0,0.191513736276177,0.121826434501038,0.214404368077712,0.250234963928291,0.0747484917210429,0.57313307062692,-0.115971073434934,0,0,0.291822322874922,0,0,0.443811579198986,-0.0636048451378017,-0.405378955880921,0.532482381668642,0,-0.108622809454255,0,0,-0.177527765965176,0,-0.086970523656144,0,0,0.11904839614412,0.0977762550875794,0,0,0,0,0,-0.00366049238721322,0,0,0,0,0,0.500254688582053,0.109808770756968,0,-0.123403938097358,0,0,0,0,0,0,0,0,0.848775019186532,-0.0896452382106135,0.091386952401292,0,0,0,0,-0.215723402553475,0.0111678059829884,0.214404368077712,0.225439765767795,0,0.569416898361385,0,0,-0.0861409897892114,0,0,0,0.107202184038856,-0.057730457053664,-0.415881608418094,0,0,0,-0.0625500335240782,0,0,0,0,-0.169736284068501,0,0,-0.0095393291817395,0,-0.378246383356308,-0.0815818795468414,0,-0.209807707614955,-0.739100390154008,0.68172923075054,0,0,-0.0469427637121753,0,0,0.0822702541965998,0,0.357302472265427,-0.0209247759461169,0,0,0,0,0.0268747817349592,0,-0.214314512399756,0,0,0,0,0,0.214404368077712,0,0,0,0,0,-0.147216552096936,0.122180311419202,0.214404368077712,0,0,0,0,0,0,-0.0241060230789031,0.10199279625809,0,0,0.0191761050254148,0,0,0,0,0,-0.0067838386898259,0,0,0,0,0,-0.0969923612426051,0,0.214404368077712,0,0.550639824106552,-0.564807121153884,0,0,0.273277691913038,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.267022506692272,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,0.24341809855645,0,0,0,0.579155021145283,0,0.30432407088703,0,0,0,0,0,0.118444960704125,0.232321050486708,0.214404368077712,0,0,0,0,0,0.214404368077712,0,0,0,0,0,0,0,-0.065017394853883,0,-0.28720751597291,-0.125934274376603,0,0,-0.053977116500328,0,0,0,0,0,0,0.075861760010329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0,0,0,0.366684204705359,0,0,0.428594129299407,0,0,0,0,0,0,0.126516432395363,0.286196498538237,-0.0693652745958975,0,0,0,-0.054385572482455,0,0,-0.0482120461578062,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0.357302472265427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214404368077712,0,0,0,0,0,0,0,0,0,0.323291108990011,0.214404368077712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214404368077712,-0.0800184682686384,0,0,0,1.32086044409137,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0592132340230216,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.193201570250285,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,-0.087428497801853,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,-0.210826294684099,0,0,0,0,0,0,0,0,0,0,0,0,0.295982293115301,0,0,0,0,0,0,0,0,0,0,0.165974325852044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113739844861982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178651236132713,0,0.143898708967725,0,0,0,0,0,0,0,0,0,0,0.62239084420464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131126171536483,0,0,0,0,0,0,0,0,0,0.214404368077712,0,0,0,0,0,0,0,0,0,0.521695457090927,0,0,0,0,0,0.214404368077712,0,0,0,0.683951405934439,0,0,0,0,0,0,0.968409922616082,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0635549871848351,0,0,0.107202184038856,0,0,0,0,0,0.357302472265427,0,0,0,0,0,0,0,0,0,0.214404368077712,0,0,0,0,0,0,0,0,0,0,0,0,0.107202184038856,0,0,0,0,0,0,0,0,0,0,0,0,0.232321050486708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35789263626163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214404368077712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0214148218462064,0,0,0,0,0,0,0,-0.122695996997001,0,0,0,0,0.000992046485717185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.083462400521294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0.214404368077712,0,0,0,0,0,0,0,0,0.31119542210232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0499379825215864,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.471727131897574,0,0,-0.0422874684771159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148514917747675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.280072095322966,0,0,-0.182670320444303,0,0,-0.170972354725524,0,0,0,0,0,0.562866490395588,0.31696709984335,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0408295247396738,0,0.214404368077712,0,0.157545421915113,-0.269475635594569,0,-0.0215337820849968,0,0,0.393242848228184,0,0,0,0.368682693599829
|repeat_enrich_byname=0,0,0,0,0.259267121027721,0,0,0,0,0,0,0,0,0,0,0,0.375211968919076,0,-0.259681850674296,0.213787329741955,0,0,-0.11608366480725,0,0.357302472265427,0,0,0,0,0,0,0,-0.128119866952565,0,-0.0504125515893149,0,0,0,0,0,-0.305472230898407,0,-0.0670558771106535,0.396297839896048,0,0,0,0,-0.037919618847616,0,-0.120879483793741,-0.0827201683234173,0.810611238118377,-0.377603005096438,0.208442707781818,0,0,0,-0.017669702624764,0.140139366363817,0,0,0.110541198734834,-0.074147434521803,0,0,-0.391044581551635,0,0.148367559399289,-0.141665866343397,0,0.0690289014906521,0,0,0,0,0,0,0,0,0,0,0,0.156910901256275,0.223651227427583,0,0,0.214404368077712,0,0.209735277576731,0,0,-0.373286155956567,0.0480865092640808,0,0.0442147419692822,0,-0.087985358932201,-0.154696408778073,0.251471300349377,-0.140213923250813,-0.147401849371139,-0.189981719549847,0,-0.246162303739518,-0.5718682610363,-0.0707459277633019,-0.0379064118334975,-0.0302447930437535,-0.20712325065158,0.228518029951433,0,0.214404368077712,-0.0775089264793031,0.0638427588667141,0,0.213057549059511,-0.275710346399061,0.160450000161022,-0.172364651400588,0.0018939234708015,-0.0143360349254864,-0.0346825073022756,-0.0395325284566706,-0.243032084818883,-0.0118356990579057,-0.0795966219364802,0,0,-0.0437597541719201,-0.282481095512694,-0.0480527216214354,0.288443157424256,0,0.0666623622955714,-0.0683442610773682,0,-0.0429939849231404,-0.449187482325803,0,0.0693734690913027,-0.221474758605985,0,0,0.214404368077712,0,0,-0.095718790794046,0.0111476810763858,0.124446910709882,0,0.131172439768584,0,-0.0219661682993104,0,0.180340584237399,0,0.0592283199041347,-0.103882344339436,0,0.0641296576660915,0.647047209906045,0.0494136717387094,-0.0650923331263104,0.155957541265887,0.319267709241285,-0.157740827643774,0.2370864619153,-0.431637392524799,0.0348903179245619,0.126277535602424,0,-0.88354475051838,0.438716444208323,0,-0.129558756043582,0,0.284750224187312,0,-0.454988940385621,0,-0.329326306560318,-0.54043375147324,-0.439289374580686,0.101093449776434,0,-0.37994757711864,0.180278984842108,0,-0.0579800050942682,-0.112503441017266,0.464642100973416,-0.150367083334639,0.441137830210187,-0.211650427864589,-0.0317872726403386,0,-0.32543805741624,0,0,0.191513736276177,0.121826434501038,0.214404368077712,0.250234963928291,0.0747484917210429,0.57313307062692,-0.115971073434934,0,0,0.291822322874922,0,0,0.443811579198986,-0.0636048451378017,-0.405378955880921,0.532482381668642,0,-0.108622809454255,0,0,-0.177527765965176,0,-0.086970523656144,0,0,0.11904839614412,0.0977762550875794,0,0,0,0,0,-0.00366049238721322,0,0,0,0,0,0.500254688582053,0.109808770756968,0,-0.123403938097358,0,0,0,0,0,0,0,0,0.848775019186532,-0.0896452382106135,0.091386952401292,0,0,0,0,-0.215723402553475,0.0111678059829884,0.214404368077712,0.225439765767795,0,0.569416898361385,0,0,-0.0861409897892114,0,0,0,0.107202184038856,-0.057730457053664,-0.415881608418094,0,0,0,-0.0625500335240782,0,0,0,0,-0.169736284068501,0,0,-0.0095393291817395,0,-0.378246383356308,-0.0815818795468414,0,-0.209807707614955,-0.739100390154008,0.68172923075054,0,0,-0.0469427637121753,0,0,0.0822702541965998,0,0.357302472265427,-0.0209247759461169,0,0,0,0,0.0268747817349592,0,-0.214314512399756,0,0,0,0,0,0.214404368077712,0,0,0,0,0,-0.147216552096936,0.122180311419202,0.214404368077712,0,0,0,0,0,0,-0.0241060230789031,0.10199279625809,0,0,0.0191761050254148,0,0,0,0,0,-0.0067838386898259,0,0,0,0,0,-0.0969923612426051,0,0.214404368077712,0,0.550639824106552,-0.564807121153884,0,0,0.273277691913038,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.267022506692272,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,0.24341809855645,0,0,0,0.579155021145283,0,0.30432407088703,0,0,0,0,0,0.118444960704125,0.232321050486708,0.214404368077712,0,0,0,0,0,0.214404368077712,0,0,0,0,0,0,0,-0.065017394853883,0,-0.28720751597291,-0.125934274376603,0,0,-0.053977116500328,0,0,0,0,0,0,0.075861760010329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0,0,0,0.366684204705359,0,0,0.428594129299407,0,0,0,0,0,0,0.126516432395363,0.286196498538237,-0.0693652745958975,0,0,0,-0.054385572482455,0,0,-0.0482120461578062,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0.357302472265427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214404368077712,0,0,0,0,0,0,0,0,0,0.323291108990011,0.214404368077712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214404368077712,-0.0800184682686384,0,0,0,1.32086044409137,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0592132340230216,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.193201570250285,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,-0.087428497801853,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,-0.210826294684099,0,0,0,0,0,0,0,0,0,0,0,0,0.295982293115301,0,0,0,0,0,0,0,0,0,0,0.165974325852044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113739844861982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178651236132713,0,0.143898708967725,0,0,0,0,0,0,0,0,0,0,0.62239084420464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131126171536483,0,0,0,0,0,0,0,0,0,0.214404368077712,0,0,0,0,0,0,0,0,0,0.521695457090927,0,0,0,0,0,0.214404368077712,0,0,0,0.683951405934439,0,0,0,0,0,0,0.968409922616082,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0635549871848351,0,0,0.107202184038856,0,0,0,0,0,0.357302472265427,0,0,0,0,0,0,0,0,0,0.214404368077712,0,0,0,0,0,0,0,0,0,0,0,0,0.107202184038856,0,0,0,0,0,0,0,0,0,0,0,0,0.232321050486708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35789263626163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214404368077712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0214148218462064,0,0,0,0,0,0,0,-0.122695996997001,0,0,0,0,0.000992046485717185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.083462400521294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0.214404368077712,0,0,0,0,0,0,0,0,0.31119542210232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0499379825215864,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.471727131897574,0,0,-0.0422874684771159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148514917747675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.280072095322966,0,0,-0.182670320444303,0,0,-0.170972354725524,0,0,0,0,0,0.562866490395588,0.31696709984335,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0408295247396738,0,0.214404368077712,0,0.157545421915113,-0.269475635594569,0,-0.0215337820849968,0,0,0.393242848228184,0,0,0,0.368682693599829
Line 89: Line 100:
|top_motifs=TBX4,5:1.91253225193;IRF7:1.75219240991;ZEB1:1.71246957667;bHLH_family:1.67568738597;ADNP_IRX_SIX_ZHX:1.6661465009;SNAI1..3:1.62316361665;VSX1,2:1.44428552858;RBPJ:1.43296953676;TP53:1.34698100844;POU1F1:1.31146039853;ZNF148:1.12105321735;ELK1,4_GABP{A,B1}:1.09596597469;PITX1..3:1.0200111651;CEBPA,B_DDIT3:0.963425872828;TEAD1:0.955326669572;FOXN1:0.939848064163;PDX1:0.906759898973;MYOD1:0.89709044638;YY1:0.888302878667;E2F1..5:0.853275695389;POU2F1..3:0.818131107722;NKX6-1,2:0.795047247526;IRF1,2:0.781558737926;TFDP1:0.781308030842;EP300:0.777544260306;TFAP2{A,C}:0.774250949299;FOXQ1:0.769129690233;FOXO1,3,4:0.764816328056;FOS_FOS{B,L1}_JUN{B,D}:0.750393212505;NR6A1:0.727781101561;CDC5L:0.68757531595;ATF4:0.658341121704;FOSL2:0.614470306447;STAT5{A,B}:0.569896030907;BACH2:0.560595526512;FOXP1:0.547337182597;NANOG:0.538126463099;FOXA2:0.482507762099;NKX2-1,4:0.477988900231;FOXM1:0.45806541932;AHR_ARNT_ARNT2:0.450345296263;ATF2:0.413802347627;FOX{I1,J2}:0.386988571861;OCT4_SOX2{dimer}:0.385844608208;HLF:0.361920995425;ZBTB6:0.35055378354;NFY{A,B,C}:0.349650078518;EN1,2:0.347411360972;IKZF1:0.345699568356;RORA:0.341639657569;PAX2:0.337810107251;NKX2-3_NKX2-5:0.336150091197;TLX1..3_NFIC{dimer}:0.333971189971;NFE2:0.328386530729;GLI1..3:0.327088018264;HIF1A:0.308760451454;SOX2:0.305750507391;FOX{D1,D2}:0.304966585674;FOXD3:0.301371255534;MED-1{core}:0.301103399101;HBP1_HMGB_SSRP1_UBTF:0.295794993093;POU5F1:0.266014280055;GFI1B:0.226363045083;MYBL2:0.216508707902;POU6F1:0.213890649499;ATF5_CREB3:0.185839039622;TBP:0.185331084993;NFKB1_REL_RELA:0.169347517136;HOXA9_MEIS1:0.168922840842;NKX2-2,8:0.142411989154;GFI1:0.142080546681;ELF1,2,4:0.131601399728;SMAD1..7,9:0.117624851162;CRX:0.0965551621785;ZNF143:0.0932391214643;PRRX1,2:0.0664940182506;HAND1,2:0.0630620766731;SOX17:0.0342595920785;HOX{A6,A7,B6,B7}:0.00608878628209;LMO2:-0.000531745704037;HMGA1,2:-0.00503160211274;ONECUT1,2:-0.0171709595852;STAT2,4,6:-0.0308842720146;LHX3,4:-0.0414698427755;HNF1A:-0.05261772954;GTF2A1,2:-0.0537746802274;SOX{8,9,10}:-0.0669521429432;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0739449304173;GCM1,2:-0.084155872924;MYB:-0.0927481168502;GTF2I:-0.128914429571;BPTF:-0.136996542399;ETS1,2:-0.13739051241;DMAP1_NCOR{1,2}_SMARC:-0.139206549396;STAT1,3:-0.154008923131;NFIL3:-0.161273298201;ZNF238:-0.165272357876;ZNF384:-0.170255854468;ZFP161:-0.173280332965;PAX8:-0.178766050394;AIRE:-0.179492771098;PBX1:-0.183275514927;NFIX:-0.190967040297;EBF1:-0.209172297079;FOX{F1,F2,J1}:-0.222540627991;PRDM1:-0.223268095024;MTF1:-0.225229113823;PAX1,9:-0.236913326506;MTE{core}:-0.244977998816;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.253518642655;RFX1:-0.256470054808;MAZ:-0.259322041621;MEF2{A,B,C,D}:-0.259650132208;LEF1_TCF7_TCF7L1,2:-0.263851704592;RUNX1..3:-0.28338621513;RFX2..5_RFXANK_RFXAP:-0.286489895557;NRF1:-0.288016881195;ARID5B:-0.289471802135;JUN:-0.289605719331;SPIB:-0.30099569609;GATA6:-0.308284420364;ZNF423:-0.30976157073;DBP:-0.310068669807;MYFfamily:-0.31569036818;PPARG:-0.321765717345;SREBF1,2:-0.331591827585;PAX4:-0.35281905292;NFE2L2:-0.359993396434;TFAP2B:-0.372704639306;TOPORS:-0.380431495394;ESRRA:-0.393497017391;NKX3-2:-0.403613985216;SPI1:-0.409755407786;HOX{A5,B5}:-0.415096586739;TLX2:-0.422619191548;ZBTB16:-0.427579773013;CUX2:-0.427888562782;MZF1:-0.428638594796;CREB1:-0.433343718892;GZF1:-0.447786686621;NR3C1:-0.448280944303;ATF6:-0.457072283466;HOX{A4,D4}:-0.462345156172;FOXL1:-0.464543459366;HNF4A_NR2F1,2:-0.473511502011;PAX3,7:-0.478522897444;HES1:-0.490798852871;NKX3-1:-0.498735938845;RREB1:-0.507692263037;XCPE1{core}:-0.511013681696;NR5A1,2:-0.513340637087;SOX5:-0.513595082782;REST:-0.520041433443;BREu{core}:-0.522078433609;TFCP2:-0.529006153052;HSF1,2:-0.5458990035;T:-0.563812627281;AR:-0.571014124332;HIC1:-0.576385489892;SRF:-0.587205368407;SP1:-0.587953564229;ESR1:-0.599378777212;ALX1:-0.635753969863;MAFB:-0.680563747821;TEF:-0.707558403451;IKZF2:-0.711182346685;GATA4:-0.82553294186;NFATC1..3:-0.828792315594;NHLH1,2:-0.831838060831;EGR1..3:-0.842159275805;TFAP4:-0.844683189479;TGIF1:-0.853987567323;PATZ1:-0.85546605466;UFEwm:-0.858625774439;NR1H4:-0.867846288489;CDX1,2,4:-0.876731284768;KLF4:-0.913699078791;PAX6:-0.921301729475;ALX4:-0.926351751786;FOXP3:-0.979365168625;RXR{A,B,G}:-1.06751927158;TAL1_TCF{3,4,12}:-1.11285435545;ZIC1..3:-1.11941649136;HMX1:-1.25587391238;NFE2L1:-1.305809194;EVI1:-1.32118949944;POU3F1..4:-1.32599303148;XBP1:-1.36020802472;SPZ1:-1.42368861898;RXRA_VDR{dimer}:-1.42731028826;PAX5:-1.54227010165;NANOG{mouse}:-2.07037368015
|top_motifs=TBX4,5:1.91253225193;IRF7:1.75219240991;ZEB1:1.71246957667;bHLH_family:1.67568738597;ADNP_IRX_SIX_ZHX:1.6661465009;SNAI1..3:1.62316361665;VSX1,2:1.44428552858;RBPJ:1.43296953676;TP53:1.34698100844;POU1F1:1.31146039853;ZNF148:1.12105321735;ELK1,4_GABP{A,B1}:1.09596597469;PITX1..3:1.0200111651;CEBPA,B_DDIT3:0.963425872828;TEAD1:0.955326669572;FOXN1:0.939848064163;PDX1:0.906759898973;MYOD1:0.89709044638;YY1:0.888302878667;E2F1..5:0.853275695389;POU2F1..3:0.818131107722;NKX6-1,2:0.795047247526;IRF1,2:0.781558737926;TFDP1:0.781308030842;EP300:0.777544260306;TFAP2{A,C}:0.774250949299;FOXQ1:0.769129690233;FOXO1,3,4:0.764816328056;FOS_FOS{B,L1}_JUN{B,D}:0.750393212505;NR6A1:0.727781101561;CDC5L:0.68757531595;ATF4:0.658341121704;FOSL2:0.614470306447;STAT5{A,B}:0.569896030907;BACH2:0.560595526512;FOXP1:0.547337182597;NANOG:0.538126463099;FOXA2:0.482507762099;NKX2-1,4:0.477988900231;FOXM1:0.45806541932;AHR_ARNT_ARNT2:0.450345296263;ATF2:0.413802347627;FOX{I1,J2}:0.386988571861;OCT4_SOX2{dimer}:0.385844608208;HLF:0.361920995425;ZBTB6:0.35055378354;NFY{A,B,C}:0.349650078518;EN1,2:0.347411360972;IKZF1:0.345699568356;RORA:0.341639657569;PAX2:0.337810107251;NKX2-3_NKX2-5:0.336150091197;TLX1..3_NFIC{dimer}:0.333971189971;NFE2:0.328386530729;GLI1..3:0.327088018264;HIF1A:0.308760451454;SOX2:0.305750507391;FOX{D1,D2}:0.304966585674;FOXD3:0.301371255534;MED-1{core}:0.301103399101;HBP1_HMGB_SSRP1_UBTF:0.295794993093;POU5F1:0.266014280055;GFI1B:0.226363045083;MYBL2:0.216508707902;POU6F1:0.213890649499;ATF5_CREB3:0.185839039622;TBP:0.185331084993;NFKB1_REL_RELA:0.169347517136;HOXA9_MEIS1:0.168922840842;NKX2-2,8:0.142411989154;GFI1:0.142080546681;ELF1,2,4:0.131601399728;SMAD1..7,9:0.117624851162;CRX:0.0965551621785;ZNF143:0.0932391214643;PRRX1,2:0.0664940182506;HAND1,2:0.0630620766731;SOX17:0.0342595920785;HOX{A6,A7,B6,B7}:0.00608878628209;LMO2:-0.000531745704037;HMGA1,2:-0.00503160211274;ONECUT1,2:-0.0171709595852;STAT2,4,6:-0.0308842720146;LHX3,4:-0.0414698427755;HNF1A:-0.05261772954;GTF2A1,2:-0.0537746802274;SOX{8,9,10}:-0.0669521429432;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0739449304173;GCM1,2:-0.084155872924;MYB:-0.0927481168502;GTF2I:-0.128914429571;BPTF:-0.136996542399;ETS1,2:-0.13739051241;DMAP1_NCOR{1,2}_SMARC:-0.139206549396;STAT1,3:-0.154008923131;NFIL3:-0.161273298201;ZNF238:-0.165272357876;ZNF384:-0.170255854468;ZFP161:-0.173280332965;PAX8:-0.178766050394;AIRE:-0.179492771098;PBX1:-0.183275514927;NFIX:-0.190967040297;EBF1:-0.209172297079;FOX{F1,F2,J1}:-0.222540627991;PRDM1:-0.223268095024;MTF1:-0.225229113823;PAX1,9:-0.236913326506;MTE{core}:-0.244977998816;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.253518642655;RFX1:-0.256470054808;MAZ:-0.259322041621;MEF2{A,B,C,D}:-0.259650132208;LEF1_TCF7_TCF7L1,2:-0.263851704592;RUNX1..3:-0.28338621513;RFX2..5_RFXANK_RFXAP:-0.286489895557;NRF1:-0.288016881195;ARID5B:-0.289471802135;JUN:-0.289605719331;SPIB:-0.30099569609;GATA6:-0.308284420364;ZNF423:-0.30976157073;DBP:-0.310068669807;MYFfamily:-0.31569036818;PPARG:-0.321765717345;SREBF1,2:-0.331591827585;PAX4:-0.35281905292;NFE2L2:-0.359993396434;TFAP2B:-0.372704639306;TOPORS:-0.380431495394;ESRRA:-0.393497017391;NKX3-2:-0.403613985216;SPI1:-0.409755407786;HOX{A5,B5}:-0.415096586739;TLX2:-0.422619191548;ZBTB16:-0.427579773013;CUX2:-0.427888562782;MZF1:-0.428638594796;CREB1:-0.433343718892;GZF1:-0.447786686621;NR3C1:-0.448280944303;ATF6:-0.457072283466;HOX{A4,D4}:-0.462345156172;FOXL1:-0.464543459366;HNF4A_NR2F1,2:-0.473511502011;PAX3,7:-0.478522897444;HES1:-0.490798852871;NKX3-1:-0.498735938845;RREB1:-0.507692263037;XCPE1{core}:-0.511013681696;NR5A1,2:-0.513340637087;SOX5:-0.513595082782;REST:-0.520041433443;BREu{core}:-0.522078433609;TFCP2:-0.529006153052;HSF1,2:-0.5458990035;T:-0.563812627281;AR:-0.571014124332;HIC1:-0.576385489892;SRF:-0.587205368407;SP1:-0.587953564229;ESR1:-0.599378777212;ALX1:-0.635753969863;MAFB:-0.680563747821;TEF:-0.707558403451;IKZF2:-0.711182346685;GATA4:-0.82553294186;NFATC1..3:-0.828792315594;NHLH1,2:-0.831838060831;EGR1..3:-0.842159275805;TFAP4:-0.844683189479;TGIF1:-0.853987567323;PATZ1:-0.85546605466;UFEwm:-0.858625774439;NR1H4:-0.867846288489;CDX1,2,4:-0.876731284768;KLF4:-0.913699078791;PAX6:-0.921301729475;ALX4:-0.926351751786;FOXP3:-0.979365168625;RXR{A,B,G}:-1.06751927158;TAL1_TCF{3,4,12}:-1.11285435545;ZIC1..3:-1.11941649136;HMX1:-1.25587391238;NFE2L1:-1.305809194;EVI1:-1.32118949944;POU3F1..4:-1.32599303148;XBP1:-1.36020802472;SPZ1:-1.42368861898;RXRA_VDR{dimer}:-1.42731028826;PAX5:-1.54227010165;NANOG{mouse}:-2.07037368015
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10412-106B7;search_select_hide=table117:FF:10412-106B7
}}
}}

Latest revision as of 13:59, 3 June 2020

Name:malignant trichilemmal cyst cell line:DJM-1
Species:Human (Homo sapiens)
Library ID:CNhs10730
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuehair follicle
dev stage87 year old adult
sexfemale
age87
cell typehair follicle, outer root sheath cell
cell lineDJM-1
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005019
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10730 CAGE DRX007926 DRR008798
Accession ID Hg19

Library idBAMCTSS
CNhs10730 DRZ000223 DRZ001608
Accession ID Hg38

Library idBAMCTSS
CNhs10730 DRZ011573 DRZ012958
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10054downloaddownloaddownloaddownload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.4
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.168
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.059
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0536
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.214
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0791
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.829
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0358
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.306
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10730

Jaspar motifP-value
MA0002.20.495
MA0003.10.477
MA0004.10.323
MA0006.10.353
MA0007.10.0668
MA0009.10.394
MA0014.10.567
MA0017.10.408
MA0018.20.657
MA0019.10.139
MA0024.10.0222
MA0025.10.113
MA0027.10.525
MA0028.12.75103e-5
MA0029.10.56
MA0030.10.346
MA0031.10.0251
MA0035.20.891
MA0038.10.0818
MA0039.20.0305
MA0040.10.738
MA0041.10.636
MA0042.10.789
MA0043.10.649
MA0046.10.259
MA0047.20.24
MA0048.10.948
MA0050.12.49677e-10
MA0051.11.86609e-9
MA0052.10.911
MA0055.10.118
MA0057.10.405
MA0058.10.607
MA0059.10.284
MA0060.10.00345
MA0061.10.397
MA0062.21.62871e-4
MA0065.20.496
MA0066.10.151
MA0067.10.204
MA0068.10.835
MA0069.10.0765
MA0070.10.848
MA0071.10.302
MA0072.10.814
MA0073.10.947
MA0074.10.348
MA0076.11.69639e-5
MA0077.10.67
MA0078.10.7
MA0079.20.261
MA0080.20.291
MA0081.10.346
MA0083.10.367
MA0084.10.13
MA0087.10.693
MA0088.10.24
MA0090.10.00226
MA0091.10.00339
MA0092.10.817
MA0093.10.42
MA0099.22.08806e-13
MA0100.10.162
MA0101.10.346
MA0102.20.481
MA0103.14.14076e-6
MA0104.20.0736
MA0105.10.22
MA0106.10.00101
MA0107.10.264
MA0108.20.939
MA0111.10.227
MA0112.20.744
MA0113.10.0433
MA0114.10.766
MA0115.10.757
MA0116.10.16
MA0117.10.399
MA0119.10.0596
MA0122.10.315
MA0124.10.879
MA0125.10.477
MA0131.10.851
MA0135.10.446
MA0136.10.206
MA0137.20.192
MA0138.20.0785
MA0139.10.107
MA0140.10.278
MA0141.10.0684
MA0142.10.0345
MA0143.10.995
MA0144.10.609
MA0145.10.0329
MA0146.10.649
MA0147.10.0443
MA0148.10.0454
MA0149.10.0366
MA0150.10.146
MA0152.10.321
MA0153.10.478
MA0154.10.865
MA0155.10.166
MA0156.10.0039
MA0157.10.054
MA0159.10.109
MA0160.10.988
MA0162.10.942
MA0163.10.532
MA0164.10.498
MA0258.10.159
MA0259.10.564



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10730

Novel motifP-value
10.608
100.553
1000.417
1010.428
1020.362
1030.92
1040.341
1050.3
1060.305
1070.253
1080.881
1090.266
110.179
1100.688
1110.403
1120.301
1130.297
1140.206
1150.708
1160.102
1170.923
1180.434
1190.786
120.355
1200.855
1210.836
1220.328
1230.0621
1240.858
1250.382
1260.847
1270.62
1280.842
1290.225
130.00269
1300.256
1310.64
1320.998
1330.0219
1340.127
1350.717
1360.958
1370.233
1380.63
1390.101
140.97
1400.629
1410.426
1420.928
1430.19
1440.0771
1450.588
1460.277
1470.682
1480.899
1490.25
150.845
1500.203
1510.235
1520.616
1530.977
1540.88
1550.789
1560.652
1570.855
1580.65
1590.317
160.999
1600.605
1610.25
1620.111
1630.465
1640.498
1650.835
1660.727
1670.354
1680.729
1690.674
170.342
180.454
190.0863
20.702
200.879
210.645
220.56
230.201
240.134
250.625
260.198
270.925
280.222
290.104
30.827
300.351
310.221
320.00144
330.213
340.185
350.413
360.0962
370.715
380.42
390.856
40.801
400.336
410.226
420.27
430.904
440.0791
450.13
460.994
470.863
480.828
490.828
50.776
500.274
510.308
520.207
530.407
540.221
550.328
560.307
570.111
580.465
590.122
60.84
600.227
610.701
620.9
630.319
640.841
650.775
660.00216
670.465
680.0284
690.468
70.205
700.108
710.545
720.814
730.945
740.239
750.00716
760.776
770.283
780.0178
791.99766e-4
80.162
800.887
810.153
820.118
830.709
840.972
850.209
860.574
870.336
880.756
890.579
90.381
900.779
910.0358
920.992
930.998
940.741
950.879
960.305
970.277
980.713
990.998



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10730


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
1749 (squamous cell carcinoma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0101120 (epithelial cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:10412-106B7&oldid=4576017"