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{{f5samples
{{f5samples
|id=FF:10412-106B7
|DRA_sample_Accession=CAGE@SAMD00005019
|name=malignant trichilemmal cyst cell line:DJM-1, biol_rep1
|HumanCAGEScanFiles=NCig10054;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/malignant%2520trichilemmal%2520cyst%2520cell%2520line%253aDJM-1.NCig10054.10412-106B7.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/malignant%2520trichilemmal%2520cyst%2520cell%2520line%253aDJM-1.NCig10054.10412-106B7.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/malignant%2520trichilemmal%2520cyst%2520cell%2520line%253aDJM-1.NCig10054.10412-106B7.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/malignant%2520trichilemmal%2520cyst%2520cell%2520line%253aDJM-1.NCig10054.10412-106B7.hg19.GCTATA.pairs.bed.gz
|sample_id=10412
|accession_numbers=CAGE;DRX007926;DRR008798;DRZ000223;DRZ001608;DRZ011573;DRZ012958
|rna_tube_id=106B7
|rna_box=106
|rna_position=B7
|sample_cell_lot=
|sample_cell_catalog=RCB0736
|sample_company=RIKEN Bioresource centre
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=87 year old adult
|sample_tissue=hair follicle
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=87
|sample_ethnicity=J
|rna_rin=
|rna_od260/230=1.76000
|rna_od260/280=2.06000
|sample_cell_type=hair follicle, outer root sheath cell
|sample_cell_line=DJM-1  
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=malignant trichilemmal cyst
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=64.56825
|rna_concentration=2.58273
|sample_note=machine failed, remainder reloaded, low amount
|profile_hcage=CNhs10730,LSID691,release008,COMPLETED
|profile_cagescan=NCig10054,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000076,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:1749,DOID:305,DOID:4
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000255
|sample_description=
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:1749
 
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0102024,FF:0101120
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.38!239.38!SOX15;;chr3:189507432..189507459,+!p1@TP63!2.38!237.46!TP63;;chr1:201979743..201979762,+!p1@ELF3!2.13!133.41!ELF3;;chr1:209979467..209979494,-!p1@IRF6!2.06!126.39!IRF6;;chr11:34642612..34642646,+!p1@EHF!2.05!112.35!EHF;;chr1:201979703..201979721,+!p2@ELF3!1.85!70.22!ELF3;;chr17:80797886..80797906,-!p1@ZNF750!1.83!66.39!ZNF750;;chr17:7492684..7492778,-!p2@SOX15!1.81!131.50!SOX15;;chr6:10415484..10415508,-!p3@TFAP2A!1.71!49.79!TFAP2A;;chr8:10588010..10588030,-!p1@SOX7!1.70!49.15!SOX7;;chr6:1312325..1312340,+!p1@FOXQ1!1.69!75.96!FOXQ1;;chr2:176969179..176969226,+!p2@HOXD11!1.68!46.60!HOXD11;;chr8:102504651..102504683,+!p1@GRHL2!1.65!43.41!GRHL2;;chr15:67418047..67418093,+!p4@SMAD3!1.61!49.79!SMAD3;;chr1:209979411..209979433,-!p2@IRF6!1.61!39.58!IRF6;;chr6:10415276..10415341,-!p2@TFAP2A!1.60!46.60!TFAP2A;;chr13:73633131..73633149,+!p1@KLF5!1.57!370.88!KLF5;;chr2:176969228..176969260,+!p1@HOXD11!1.57!36.39!HOXD11;;chr8:71157595..71157616,-!p13@NCOA2!1.57!35.75!NCOA2;;chr1:158979872..158979898,+!p3@IFI16!1.54!99.58!IFI16;;chr21:36421535..36421610,-!p2@RUNX1!1.50!104.69!RUNX1;;chr6:10419768..10419819,-!p6@TFAP2A!1.50!30.64!TFAP2A;;chr14:37131058..37131139,+!p1@PAX9!1.48!29.36!PAX9;;chr6:126240380..126240430,+!p2@NCOA7!1.47!72.77!NCOA7;;chr15:101069113..101069169,-!p1@CERS3!1.44!26.81!CERS3;;chr5:134369905..134369972,-!p1@PITX1!1.43!39.58!PITX1;;chr15:83953397..83953425,-!p1@BNC1!1.38!26.17!BNC1;;chr17:48072574..48072597,-!p1@DLX3!1.38!22.98!DLX3;;chr6:10412600..10412637,-!p1@TFAP2A!1.34!34.47!TFAP2A;;chr6:126240442..126240459,+!p4@NCOA7!1.33!26.17!NCOA7;;chr3:111314186..111314204,-!p1@ZBED2!1.33!20.43!ZBED2;;chr1:158979792..158979814,+!p2@IFI16!1.30!178.10!IFI16;;chr1:6479968..6479986,-!p1@HES2!1.30!19.15!HES2;;chr5:134369879..134369898,-!p2@PITX1!1.28!17.87!PITX1;;chr5:2751762..2751784,-!p1@IRX2!1.28!17.87!IRX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.28!17.87!HOXC5;;chr15:67418119..67418162,+!p5@SMAD3!1.26!19.15!SMAD3;;chr19:45908292..45908374,-!p1@PPP1R13L!1.25!144.90!PPP1R13L;;chr6:126102292..126102329,+!p3@NCOA7!1.25!54.90!NCOA7;;chr19:45971246..45971265,+!p1@FOSB!1.23!291.72!FOSB;;chr11:120107344..120107351,+!p1@POU2F3!1.23!19.15!POU2F3;;chr3:189507460..189507471,+!p3@TP63!1.23!15.96!TP63;;chr13:41593425..41593480,-!p1@ELF1!1.21!95.11!ELF1;;chr11:34642656..34642667,+!p2@EHF!1.21!15.32!EHF;;chr8:102504690..102504704,+!p3@GRHL2!1.21!15.32!GRHL2;;chr12:54785074..54785122,-!p2@ZNF385A!1.20!22.98!ZNF385A;;chr11:65667884..65667895,-!p2@FOSL1!1.18!54.90!FOSL1;;chr17:38256822..38256851,-!p1@NR1D1!1.16!105.96!NR1D1;;chr6:126240356..126240379,+!p7@NCOA7!1.16!16.60!NCOA7;;chr7:27153454..27153469,-!p2@HOXA3!1.16!13.41!HOXA3;;chr8:49833948..49833973,-!p2@SNAI2!1.14!81.71!SNAI2;;chr5:137804405..137804444,+!p3@EGR1!1.14!15.32!EGR1;;chr11:129245526..129245553,+!p1@BARX2!1.14!12.77!BARX2;;chr2:176969097..176969109,+!p3@HOXD11!1.14!12.77!HOXD11;;chr7:27195867..27195893,-!p3@HOXA7!1.12!12.13!HOXA7;;chr7:27205136..27205164,-!p1@HOXA9!1.12!12.13!HOXA9;;chr7:96654133..96654150,-!p1@DLX5!1.12!12.13!DLX5;;chr12:54785054..54785072,-!p4@ZNF385A!1.11!13.41!ZNF385A;;chr11:65667846..65667868,-!p1@FOSL1!1.10!302.57!FOSL1;;chr8:102504979..102505010,+!p2@GRHL2!1.10!11.49!GRHL2;;chr11:34645791..34645836,+!p3@EHF!1.07!10.85!EHF;;chr1:935467..935484,-!p1@HES4!1.06!46.60!HES4;;chr1:158979851..158979865,+!p5@IFI16!1.05!22.98!IFI16;;chr12:125002827..125002855,-!p5@NCOR2!1.05!14.68!NCOR2;;chr2:176969124..176969155,+!p5@HOXD11!1.05!10.21!HOXD11;;chr8:128748470..128748487,+!p1@MYC!1.03!1075.61!MYC;;chr10:48355030..48355090,+!p1@ZNF488!1.03!12.77!ZNF488;;chr19:12902289..12902307,+!p1@JUNB!1.02!2183.77!JUNB;;chr3:193853927..193853944,+!p1@HES1!1.02!315.98!HES1;;chr17:70117153..70117174,+!p1@SOX9!1.02!98.94!SOX9;;chr8:22550982..22550999,-!p1@EGR3!1.01!26.81!EGR3;;chr3:32023232..32023273,+!p1@ZNF860!1.01!13.41!ZNF860;;chr8:49833978..49833996,-!p1@SNAI2!1.00!187.03!SNAI2;;chr2:60780607..60780624,-!p2@BCL11A!1.00!28.09!BCL11A;;chr20:55204351..55204377,+!p1@TFAP2C!1.00!11.49!TFAP2C;;chr6:126240463..126240489,+!p6@NCOA7!1.00!10.21!NCOA7;;chr6:10413188..10413249,-!p7@TFAP2A!1.00!8.94!TFAP2A;;chr17:46682321..46682362,-!p1@HOXB6!1.00!8.94!HOXB6;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.00!8.94!ZBED1;;chr9:110252035..110252057,-!p1@KLF4!0.98!140.44!KLF4;;chr2:231084639..231084654,-!p2@SP110!0.97!14.04!SP110;;chr19:12476443..12476467,-!p1@ZNF442!0.97!14.04!ZNF442;;chr20:39317868..39317884,-!p1@MAFB!0.96!99.58!MAFB;;chr12:2986275..2986363,-!p1@FOXM1!0.95!82.35!FOXM1;;chr22:38597987..38598021,+!p2@MAFF!0.94!48.51!MAFF;;chr3:181429704..181429722,+!p1@SOX2!0.94!7.66!SOX2;;chr1:61548225..61548299,+!p1@NFIA!0.93!101.50!NFIA;;chr2:46524897..46524911,+!p2@EPAS1!0.92!21.07!EPAS1;;chr17:46687959..46688007,-!p2@HOXB7!0.92!10.21!HOXB7;;chr1:212782094..212782109,+!p1@ATF3!0.91!204.27!ATF3;;chr5:134369643..134369675,-!p4@PITX1!0.90!7.02!PITX1;;chr17:46703212..46703238,-!p2@HOXB9!0.9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232;;chr17:7492504..7492520,-!p3@SOX15!0.36!1.28!SOX15;;chr19:11750543..11750565,+!p2@ZNF833P!0.36!1.28!ZNF833P;;chr19:12267577..12267593,-!p3@ZNF625!0.36!1.28!ZNF625;;chr19:22034784..22034801,-!p4@ZNF43!0.36!1.28!ZNF43;;chr19:31840699..31840720,-!p7@TSHZ3!0.36!1.28!TSHZ3;;chr5:133450458..133450469,+!p4@TCF7!0.36!1.28!TCF7;;chr5:3595961..3595975,+!p3@IRX1!0.36!1.28!IRX1;;chr6:100061724..100061753,+!p1@PRDM13!0.36!1.28!PRDM13;;chr6:10412477..10412490,-!p10@TFAP2A!0.36!1.28!TFAP2A;;chr6:10415645..10415675,-!p19@TFAP2A!0.36!1.28!TFAP2A;;chr6:10419884..10419898,-!p11@TFAP2A!0.36!1.28!TFAP2A;;chr6:106546786..106546802,+!p6@PRDM1!0.36!1.28!PRDM1;;chr6:1389989..1390019,+!p2@FOXF2!0.36!1.28!FOXF2;;chr6:168333280..168333294,+!p9@MLLT4!0.36!1.28!MLLT4;;chr6:36355431..36355466,-!p1@ETV7!0.36!1.28!ETV7;;chr6:36355486..36355497,-!p3@ETV7!0.36!1.28!ETV7;;chr6:45389966..45389977,+!p23@RUNX2!0.36!1.28!RUNX2;;chr6:45390137..45390148,+!p12@RUNX2!0.36!1.28!RUNX2;;chr7:101917407..101917443,+!p3@CUX1!0.36!1.28!CUX1;;chr7:101917482..101917507,+!p6@CUX1!0.36!1.28!CUX1;;chr7:139762578..139762589,-!p2@PARP12!0.36!1.28!PARP12;;chr7:19156632..19156652,-!p3@TWIST1!0.36!1.28!TWIST1;;chr7:20826504..20826526,-!p1@SP8!0.36!1.28!SP8;;chr7:27153443..27153450,-!p8@HOXA3!0.36!1.28!HOXA3;;chr7:27153590..27153608,-!p7@HOXA3!0.36!1.28!HOXA3;;chr7:27205175..27205184,-!p3@HOXA9!0.36!1.28!HOXA9;;chr7:73038839..73038862,-!p1@MLXIPL!0.36!1.28!MLXIPL;;chr7:96635277..96635301,+!p7@DLX6!0.36!1.28!DLX6;;chr7:96635665..96635685,+!p6@DLX6!0.36!1.28!DLX6;;chr7:96654026..96654061,-!p2@DLX5!0.36!1.28!DLX5;;chr8:103668114..103668134,-!p5@KLF10!0.36!1.28!KLF10;;chr8:103668151..103668163,-!p12@KLF10!0.36!1.28!KLF10;;chr8:57123898..57123909,-!p3@PLAG1!0.36!1.28!PLAG1;;chr8:76319850..76319870,+!p4@HNF4G!0.36!1.28!HNF4G;;chr9:100615499..100615519,+!p1@FOXE1!0.36!1.28!FOXE1;;chr9:1050331..1050363,+!p1@DMRT2!0.36!1.28!DMRT2;;chr9:124976299..124976327,-!p3@LHX6!0.36!1.28!LHX6;;chr9:14314476..14314487,-!p9@NFIB!0.36!1.28!NFIB;;chrX:56258900..56258917,+!p4@KLF8!0.36!1.28!KLF8;;chr9:2158487..2158498,+!p21@SMARCA2!0.36!1.28!SMARCA2;;chr19:45251395..45251432,+!p8@BCL3!0.36!1.28!BCL3;;chr19:45257891..45257908,+!p17@BCL3!0.36!1.28!BCL3;;chr19:45972203..45972226,+!p5@FOSB!0.36!1.28!FOSB;;chr19:54024313..54024361,+!p7@ZNF331!0.36!1.28!ZNF331;;chr1:10856639..10856662,-!p2@CASZ1!0.36!1.28!CASZ1;;chr1:201979892..201979925,+!p3@ELF3!0.36!1.28!ELF3;;chr1:209979375..209979386,-!p4@IRF6!0.36!1.28!IRF6;;chr1:212873084..212873137,-!p2@BATF3!0.36!1.28!BATF3;;chr1:23694532..23694549,-!p8@ZNF436!0.36!1.28!ZNF436;;chr1:24646002..24646013,+!p3@GRHL3!0.36!1.28!GRHL3;;chr1:25256175..25256228,-!p5@RUNX3!0.36!1.28!RUNX3;;chr1:3607219..3607226,+!p16@TP73!0.36!1.28!TP73;;chr1:42801540..42801562,-!p4@FOXJ3!0.36!1.28!FOXJ3;;chr1:47779845..47779848,-!p3@STIL,p8@TAL1!0.36!1.28!TAL1;;chr1:8585919..8585943,-!p18@RERE!0.36!1.28!RERE;;chr20:50418128..50418147,-!p2@SALL4!0.36!1.28!SALL4;;chr20:51589792..51589811,+!p7@TSHZ2!0.36!1.28!TSHZ2;;chr20:55205825..55205847,+!p2@TFAP2C!0.36!1.28!TFAP2C;;chr21:34143971..34143983,-!p8@GCFC1!0.36!1.28!GCFC1;;chr21:36260495..36260506,-!p23@RUNX1!0.36!1.28!RUNX1;;chr21:40032558..40032578,-!p5@ERG!0.36!1.28!ERG;;chr21:40032884..40032915,-!p2@ERG!0.36!1.28!ERG;;chr22:41763452..41763466,+!p2@TEF!0.36!1.28!TEF;;chr2:10183635..10183647,+!p3@KLF11!0.36!1.28!KLF11;;chr2:172949484..172949522,+!p1@DLX1!0.36!1.28!DLX1;;chr2:176971685..176971700,+!p6@HOXD11!0.36!1.28!HOXD11;;chr2:176987415..176987425,+!p4@HOXD9!0.36!1.28!HOXD9;;chr2:176987441..176987454,+!p1@HOXD9!0.36!1.28!HOXD9;;chr2:176994919..176994931,+!p2@HOXD8!0.36!1.28!HOXD8;;chr2:177001290..177001315,+!p1@HOXD3!0.36!1.28!HOXD3;;chr2:214015343..214015366,-!p3@IKZF2!0.36!1.28!IKZF2;;chr2:237077022..237077038,-!p1@GBX2!0.36!1.28!GBX2;;chr2:60780730..60780742,-!p5@BCL11A!0.36!1.28!BCL11A;;chr2:63277978..63277995,+!p2@OTX1!0.36!1.28!OTX1;;chr2:74730087..74730102,-!p4@LBX2!0.36!1.28!LBX2;;chr3:101573360..101573363,+!p8@NFKBIZ!0.36!1.28!NFKBIZ;;chr3:141087562..141087594,+!p12@ZBTB38!0.36!1.28!ZBTB38;;chr3:141868189..141868200,-!p9@TFDP2!0.36!1.28!TFDP2;;chr3:147111198..147111225,+!p4@ZIC1!0.36!1.28!ZIC1;;chr3:147111231..147111281,+!p3@ZIC1!0.36!1.28!ZIC1;;chr3:147111317..147111328,+!p8@ZIC1!0.36!1.28!ZIC1;;chr3:185784049..185784050,-!p7@ETV5!0.36!1.28!ETV5;;chr3:189526056..189526064,+!p15@TP63!0.36!1.28!TP63;;chr3:5022254..5022271,+!p12@BHLHE40!0.36!1.28!BHLHE40;;chr3:5022272..5022321,+!p7@BHLHE40!0.36!1.28!BHLHE40;;chr4:111544219..111544240,-!p1@PITX2!0.36!1.28!PITX2;;chr20:30193083..30193098,+!p1@ID1!0.35!164.69!ID1;;chr1:42800860..42800912,-!p1@FOXJ3!0.35!74.69!FOXJ3;;chr9:137218281..137218340,+!p1@RXRA!0.35!57.45!RXRA;;chr19:45251943..45252006,+!p1@BCL3!0.35!53.62!BCL3;;chrX:70586140..70586218,+!p1@TAF1!0.35!37.02!TAF1;;chr15:85291785..85291848,+!p1@ZNF592!0.35!36.39!ZNF592;;chr8:145159357..145159373,+!p3@MAF1!0.35!25.53!MAF1;;chr1:200379129..200379174,-!p1@ZNF281!0.35!24.26!ZNF281;;chr19:11708259..11708309,+!p1@ZNF627!0.35!19.79!ZNF627;;chr19:12662240..12662310,-!p1@ZNF564,p1@ZNF709!0.35!15.32!ZNF564;;chr19:55987963..55987996,+!p1@ZNF628!0.35!14.68!ZNF628;;chr7:99070499..99070523,+!p1@ZNF789!0.35!10.21!ZNF789;;chr3:129158854..129158883,-!p3@MBD4!0.35!9.58!MBD4;;chr13:41635285..41635356,-!p3@ELF1!0.35!7.66!ELF1;;chr9:117160738..117160782,-!p2@AKNA!0.35!7.66!AKNA;;chr19:53289995..53290050,-!p1@ZNF600!0.35!7.66!ZNF600;;chr1:43148792..43148849,+!p2@YBX1!0.35!7.02!YBX1;;chr1:151043216..151043256,+!p1@GABPB2!0.35!6.38!GABPB2;;chr19:53868940..53868990,+!p1@ZNF525,p2@ZNF765!0.35!5.11!ZNF525;;chr19:46271505..46271575,-!p2@SIX5!0.35!4.47!SIX5;;chr9:3525727..3525828,-!p2@RFX3!0.35!4.47!RFX3;;chr14:35872962..35873025,-!p3@NFKBIA!0.35!4.47!NFKBIA;;chr17:38256973..38256990,-!p5@NR1D1!0.35!3.83!NR1D1;;chr6:157098579..157098634,+!p4@ARID1B!0.35!3.83!ARID1B;;chr5:88179230..88179270,-!p4@MEF2C!0.35!3.19!MEF2C;;chr8:123793959..123793977,+!p4@ZHX2!0.35!3.19!ZHX2;;chr12:66218183..66218209,+!p4@HMGA2!0.35!3.19!HMGA2;;chr1:33721873..33721898,+!p3@ZNF362!0.35!3.19!ZNF362;;chr16:89787973..89788001,+!p3@ZNF276!0.35!3.19!ZNF276;;chr19:17356189..17356221,-!p2@NR2F6!0.35!2.55!NR2F6;;chr10:3824332..3824425,-!p4@KLF6!0.35!2.55!KLF6;;chr3:107244229..107244254,+!p3@BBX!0.35!2.55!BBX;;chr19:54024251..54024305,+!p4@ZNF331!0.35!2.55!ZNF331;;chr18:3449330..3449344,+!p10@TGIF1!0.35!1.92!TGIF1;;chr19:12551824..12551846,-!p2@ZNF443!0.35!1.92!ZNF443;;chr12:57916584..57916682,+!p1@MBD6!0.34!39.58!MBD6;;chr2:28616337..28616355,+!p2@FOSL2!0.34!34.47!FOSL2;;chr19:7069690..7069726,+!p1@ZNF557!0.34!17.87!ZNF557;;chr6:33422343..33422394,+!p1@ZBTB9!0.34!12.77!ZBTB9;;chr1:14026671..14026705,+!p2@PRDM2!0.34!11.49!PRDM2;;chr15:85291544..85291598,+!p2@ZNF592!0.34!11.49!ZNF592;;chr14:100705335..100705360,+!p4@YY1!0.34!10.85!YY1;;chr11:65686952..65686975,+!p5@DRAP1!0.34!10.21!DRAP1;;chr19:9434841..9434886,+!p1@ZNF559!0.34!9.58!ZNF559;;chr19:53238260..53238312,-!p1@ZNF611!0.34!6.38!ZNF611;;chr1:40915725..40915808,+!p1@ZNF643!0.34!5.11!ZNF643;;chr19:21106081..21106115,+!p2@ZNF85!0.34!5.11!ZNF85;;chr19:36705547..36705597,-!p1@ZNF565!0.34!4.47!ZNF565;;chr6:91006518..91006570,-!p1@BACH2!0.34!3.83!BACH2;;chr3:71632840..71632857,-!p10@FOXP1!0.34!3.19!FOXP1;;chr6:1610293..1610310,+!p1@FOXC1!0.34!2.55!FOXC1;;chr7:148844581..148844606,+!p2@ZNF398!0.34!2.55!ZNF398;;chr19:35417798..35417842,+!p1@ZNF30!0.34!2.55!ZNF30;;chr1:205592857..205592880,-!p6@ELK4!0.34!2.55!ELK4;;chr6:45390343..45390388,+!p10@RUNX2!0.34!1.92!RUNX2;;chr3:170075103..170075114,+!p5@SKIL!0.34!1.92!SKIL;;chrX:131624056..131624069,-!p2@MBNL3!0.34!1.92!MBNL3;;chr1:78149041..78149142,-!p1@ZZZ3!0.33!36.39!ZZZ3;;chr10:45496346..45496409,+!p1@ZNF22!0.33!26.81!ZNF22;;chr15:41952591..41952672,+!p1@MGA!0.33!25.53!MGA;;chr9:14314566..14314618,-!p1@NFIB!0.33!22.98!NFIB;;chr19:42580274..42580375,+!p1@ZNF574!0.33!21.70!ZNF574;;chr6:33168126..33168180,-!p2@RXRB!0.33!19.79!RXRB;;chr1:205601093..205601158,-!p1@ELK4!0.33!16.60!ELK4;;chr12:19592405..19592492,+!p2@AEBP2!0.33!15.96!AEBP2;;chr1:157108130..157108173,-!p1@ETV3!0.33!13.41!ETV3;;chr9:125667518..125667588,-!p1@RC3H2!0.33!12.13!RC3H2;;chr19:9785724..9785740,-!p2@ZNF562!0.33!7.02!ZNF562;;chr8:128750654..128750793,+!p3@MYC!0.33!7.02!MYC;;chr3:114866084..114866118,-!p2@ZBTB20!0.33!6.38!ZBTB20;;chr19:53445819..53445860,-!p2@ZNF321P,p2@ZNF816-ZNF321P,p2@ZNF816!0.33!5.11!ZNF321P;;chr16:67062996..67063016,+!p3@CBFB!0.33!5.11!CBFB;;chr10:44070016..44070069,-!p1@ZNF239!0.33!5.11!ZNF239;;chr1:161736038..161736056,+!p4@ATF6!0.33!3.83!ATF6;;chr3:5021268..5021282,+!p4@BHLHE40!0.33!3.19!BHLHE40;;chr5:76383133..76383186,-!p2@ZBED3!0.33!3.19!ZBED3;;chr7:74072193..74072218,+!p4@GTF2I!0.33!2.55!GTF2I;;
|fonse_cell_line=FF:0101120
|fonse_cell_line=FF:0101120
|fonse_cell_line_closure=FF:0101120
|fonse_cell_line_closure=FF:0101120
Line 67: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/malignant%2520trichilemmal%2520cyst%2520cell%2520line%253aDJM-1.CNhs10730.10412-106B7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/malignant%2520trichilemmal%2520cyst%2520cell%2520line%253aDJM-1.CNhs10730.10412-106B7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/malignant%2520trichilemmal%2520cyst%2520cell%2520line%253aDJM-1.CNhs10730.10412-106B7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/malignant%2520trichilemmal%2520cyst%2520cell%2520line%253aDJM-1.CNhs10730.10412-106B7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/malignant%2520trichilemmal%2520cyst%2520cell%2520line%253aDJM-1.CNhs10730.10412-106B7.hg38.nobarcode.ctss.bed.gz
|id=FF:10412-106B7
|is_a=EFO:0002091;;FF:0000210;;FF:0102024
|is_obsolete=
|library_id=CNhs10730
|library_id_phase_based=2:CNhs10730
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10412
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10412
|name=malignant trichilemmal cyst cell line:DJM-1
|namespace=FANTOM5
|part_of=
|profile_cagescan=NCig10054,,,
|profile_hcage=CNhs10730,LSID691,release008,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0.275319912053276,0,0,0,0,0.30432407088703,0,0.267022506692272,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0.62239084420464,0,0,-0.153323010348428,0,0,0,0,0,0.366684204705359,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.0215691736594172,0,0,0,0,0,0,0,0,0.082987162926022,0,0,0,0,0,-0.0436114919460079,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0111678059829884,0,0,0,0,0,0,-0.0379064118334975,0,0,0,0.155957541265887,-0.0325461665631552,0.107202184038856,0,0,0,0.259267121027721,0.147376219370674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178946318130815,0,0,0,0,0.113739844861982,0,0,0,0,0,0
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|rna_box=106
|rna_catalog_number=
|rna_concentration=2.58273
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=1.76
|rna_od260/280=2.06
|rna_position=B7
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=106B7
|rna_weight_ug=64.56825
|sample_age=87
|sample_category=cell lines
|sample_cell_catalog=RCB0736
|sample_cell_line=DJM-1
|sample_cell_lot=
|sample_cell_type=hair follicle, outer root sheath cell
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=87 year old adult
|sample_disease=malignant trichilemmal cyst
|sample_donor(cell lot)=
|sample_ethnicity=J
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.60315194417238e-258!GO:0043226;organelle;1.12500525285017e-211!GO:0043229;intracellular organelle;7.53170543865792e-211!GO:0043231;intracellular membrane-bound organelle;1.75512346354935e-204!GO:0043227;membrane-bound organelle;1.86179370411629e-204!GO:0005737;cytoplasm;3.43365225192207e-154!GO:0044422;organelle part;1.64241121995495e-129!GO:0044446;intracellular organelle part;4.96534399709804e-128!GO:0005634;nucleus;8.44029116157356e-114!GO:0044237;cellular metabolic process;3.19354122997994e-93!GO:0044238;primary metabolic process;9.9653080037236e-93!GO:0043170;macromolecule metabolic process;2.42806910587642e-92!GO:0032991;macromolecular complex;5.31268749456931e-92!GO:0044444;cytoplasmic part;1.52387163441257e-90!GO:0044428;nuclear part;6.42739086564241e-82!GO:0030529;ribonucleoprotein complex;7.10822730580182e-79!GO:0003723;RNA binding;4.84837076603379e-77!GO:0043233;organelle lumen;2.36532177899911e-76!GO:0031974;membrane-enclosed lumen;2.36532177899911e-76!GO:0005515;protein binding;5.23661880776307e-76!GO:0043283;biopolymer metabolic process;1.1941054234449e-65!GO:0010467;gene expression;3.50605785635132e-63!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.8256658884093e-62!GO:0006396;RNA processing;2.67818956866652e-56!GO:0031981;nuclear lumen;4.81680038412546e-53!GO:0005739;mitochondrion;5.37090232172151e-51!GO:0016043;cellular component organization and biogenesis;1.71178181327092e-47!GO:0006412;translation;2.2624620532211e-47!GO:0043234;protein complex;1.55405418079783e-45!GO:0043228;non-membrane-bound organelle;2.73840270393338e-44!GO:0043232;intracellular non-membrane-bound organelle;2.73840270393338e-44!GO:0019538;protein metabolic process;1.14542685813115e-43!GO:0005840;ribosome;1.70251782159375e-43!GO:0003676;nucleic acid binding;4.41533062907702e-43!GO:0016071;mRNA metabolic process;3.12538862161855e-41!GO:0044267;cellular protein metabolic process;2.44615047807561e-39!GO:0033036;macromolecule localization;4.85207800911684e-39!GO:0044260;cellular macromolecule metabolic process;2.56030766037276e-38!GO:0015031;protein transport;7.91208519265609e-38!GO:0003735;structural constituent of ribosome;3.58743241200295e-37!GO:0008380;RNA splicing;3.98797825990276e-37!GO:0006259;DNA metabolic process;4.51714717177339e-37!GO:0016070;RNA metabolic process;7.07145264405392e-37!GO:0006397;mRNA processing;4.78764451749923e-36!GO:0006996;organelle organization and biogenesis;4.22038285530083e-35!GO:0008104;protein localization;5.05764600542281e-35!GO:0045184;establishment of protein localization;1.91928682961924e-34!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.65503301860988e-34!GO:0009059;macromolecule biosynthetic process;1.07541317520724e-32!GO:0031090;organelle membrane;1.29331121348769e-32!GO:0046907;intracellular transport;3.84231847332315e-32!GO:0033279;ribosomal subunit;7.82263742135475e-32!GO:0044249;cellular biosynthetic process;8.36441401455223e-32!GO:0031967;organelle envelope;2.10490534698169e-31!GO:0044429;mitochondrial part;2.37552675359095e-31!GO:0031975;envelope;4.4584218886346e-31!GO:0009058;biosynthetic process;5.53550871650035e-31!GO:0005829;cytosol;6.28160256931458e-31!GO:0065003;macromolecular complex assembly;1.31722617480394e-30!GO:0005654;nucleoplasm;1.61122520254609e-30!GO:0006886;intracellular protein transport;1.31558239241753e-27!GO:0022607;cellular component assembly;4.34352717249058e-27!GO:0005681;spliceosome;1.40732035378535e-26!GO:0007049;cell cycle;2.93667215168954e-26!GO:0044451;nucleoplasm part;8.0506707744744e-26!GO:0005730;nucleolus;1.50909626954411e-25!GO:0000166;nucleotide binding;1.83474218233905e-23!GO:0008134;transcription factor binding;3.12262903637716e-22!GO:0016462;pyrophosphatase activity;3.01100165586397e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.27757190426224e-21!GO:0017111;nucleoside-triphosphatase activity;4.46502857603666e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;5.47224227290169e-21!GO:0051649;establishment of cellular localization;7.86998837742838e-21!GO:0051641;cellular localization;1.2870931980774e-20!GO:0006974;response to DNA damage stimulus;2.51167514142447e-20!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.97328529130065e-20!GO:0022402;cell cycle process;1.97501084105202e-19!GO:0016874;ligase activity;7.06031559230905e-19!GO:0005740;mitochondrial envelope;1.90622779135996e-18!GO:0005694;chromosome;2.46027386015922e-18!GO:0050794;regulation of cellular process;3.95240109977797e-18!GO:0006366;transcription from RNA polymerase II promoter;9.3260857605262e-18!GO:0043285;biopolymer catabolic process;9.37155987731622e-18!GO:0006512;ubiquitin cycle;1.02810864787025e-17!GO:0022618;protein-RNA complex assembly;1.25666963606905e-17!GO:0031966;mitochondrial membrane;1.2773879798514e-17!GO:0042254;ribosome biogenesis and assembly;1.80416192445141e-17!GO:0019866;organelle inner membrane;2.14770952500953e-17!GO:0000278;mitotic cell cycle;4.87316086288823e-17!GO:0051276;chromosome organization and biogenesis;4.9340980728713e-17!GO:0044445;cytosolic part;8.99522566992403e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;9.70288954810755e-17!GO:0015934;large ribosomal subunit;1.16803226659337e-16!GO:0006281;DNA repair;1.53360596646048e-16!GO:0019941;modification-dependent protein catabolic process;1.73171000319163e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.73171000319163e-16!GO:0044257;cellular protein catabolic process;2.95177478750398e-16!GO:0006119;oxidative phosphorylation;3.05780830973094e-16!GO:0005743;mitochondrial inner membrane;3.53885743837861e-16!GO:0015935;small ribosomal subunit;4.2591705692834e-16!GO:0006511;ubiquitin-dependent protein catabolic process;4.4285821383273e-16!GO:0031980;mitochondrial lumen;4.89527306842093e-16!GO:0005759;mitochondrial matrix;4.89527306842093e-16!GO:0006605;protein targeting;8.26021663484762e-16!GO:0048770;pigment granule;8.70766960993732e-16!GO:0042470;melanosome;8.70766960993732e-16!GO:0032553;ribonucleotide binding;1.00290426128655e-15!GO:0032555;purine ribonucleotide binding;1.00290426128655e-15!GO:0006457;protein folding;1.7204677739389e-15!GO:0044427;chromosomal part;1.72438797627697e-15!GO:0044265;cellular macromolecule catabolic process;2.57420672338375e-15!GO:0017076;purine nucleotide binding;3.74816397369506e-15!GO:0004386;helicase activity;7.31815952316965e-15!GO:0030163;protein catabolic process;7.44943741526589e-15!GO:0012501;programmed cell death;8.05873415693717e-15!GO:0008135;translation factor activity, nucleic acid binding;9.63087511350075e-15!GO:0006915;apoptosis;1.12467666050308e-14!GO:0000502;proteasome complex (sensu Eukaryota);1.21095191068012e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;1.69780712719111e-14!GO:0006260;DNA replication;1.7539586023086e-14!GO:0009719;response to endogenous stimulus;1.76164360846118e-14!GO:0005761;mitochondrial ribosome;1.92417842303674e-14!GO:0000313;organellar ribosome;1.92417842303674e-14!GO:0005524;ATP binding;3.347220304762e-14!GO:0003712;transcription cofactor activity;3.3877821204752e-14!GO:0044455;mitochondrial membrane part;3.61011718871672e-14!GO:0032559;adenyl ribonucleotide binding;6.02327994243603e-14!GO:0016604;nuclear body;6.02327994243603e-14!GO:0006323;DNA packaging;8.05959899183656e-14!GO:0009057;macromolecule catabolic process;8.74480228219597e-14!GO:0008219;cell death;1.20334927790974e-13!GO:0016265;death;1.20334927790974e-13!GO:0016887;ATPase activity;1.45575738374344e-13!GO:0019222;regulation of metabolic process;2.62691941229746e-13!GO:0030554;adenyl nucleotide binding;2.9822390278501e-13!GO:0043412;biopolymer modification;2.9822390278501e-13!GO:0005635;nuclear envelope;3.40373657825212e-13!GO:0012505;endomembrane system;3.45516872796489e-13!GO:0006913;nucleocytoplasmic transport;3.61270843128663e-13!GO:0000087;M phase of mitotic cell cycle;6.92086070530235e-13!GO:0050789;regulation of biological process;6.96508027513244e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;7.74423256537129e-13!GO:0000375;RNA splicing, via transesterification reactions;7.74423256537129e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.74423256537129e-13!GO:0051169;nuclear transport;8.57879149577492e-13!GO:0051082;unfolded protein binding;1.15533298152927e-12!GO:0007067;mitosis;1.17564271362853e-12!GO:0031965;nuclear membrane;1.84567017784911e-12!GO:0022403;cell cycle phase;3.02118846693049e-12!GO:0042623;ATPase activity, coupled;4.7521334549561e-12!GO:0005794;Golgi apparatus;4.7521334549561e-12!GO:0000074;regulation of progression through cell cycle;5.62717591858724e-12!GO:0051726;regulation of cell cycle;6.73889742589186e-12!GO:0006399;tRNA metabolic process;9.52641795577688e-12!GO:0016607;nuclear speck;1.34633900179614e-11!GO:0006446;regulation of translational initiation;1.70156334920416e-11!GO:0016072;rRNA metabolic process;2.07167535456641e-11!GO:0006364;rRNA processing;2.21343977188883e-11!GO:0005746;mitochondrial respiratory chain;2.27534017107016e-11!GO:0044453;nuclear membrane part;2.92459128300188e-11!GO:0051301;cell division;3.13715363432222e-11!GO:0003743;translation initiation factor activity;3.48027728102454e-11!GO:0008026;ATP-dependent helicase activity;3.64329275124972e-11!GO:0043687;post-translational protein modification;4.16034982628779e-11!GO:0006413;translational initiation;4.26828145046695e-11!GO:0048193;Golgi vesicle transport;4.57461420721406e-11!GO:0006464;protein modification process;4.66724262473792e-11!GO:0048523;negative regulation of cellular process;5.25808854727377e-11!GO:0008639;small protein conjugating enzyme activity;5.44173614631949e-11!GO:0004842;ubiquitin-protein ligase activity;9.14062598724042e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.08885923931896e-10!GO:0005643;nuclear pore;1.1216605064235e-10!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.16585506233376e-10!GO:0044248;cellular catabolic process;1.57335381583908e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.81048667911596e-10!GO:0042981;regulation of apoptosis;2.23644134623123e-10!GO:0006403;RNA localization;2.33947792749329e-10!GO:0050657;nucleic acid transport;2.36770515147591e-10!GO:0051236;establishment of RNA localization;2.36770515147591e-10!GO:0050658;RNA transport;2.36770515147591e-10!GO:0019787;small conjugating protein ligase activity;2.50194480358048e-10!GO:0043067;regulation of programmed cell death;2.56903706866554e-10!GO:0031323;regulation of cellular metabolic process;2.99079774827178e-10!GO:0006333;chromatin assembly or disassembly;3.17614295404542e-10!GO:0000279;M phase;4.02491082713234e-10!GO:0000785;chromatin;4.22630182404325e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.26652340044936e-10!GO:0006350;transcription;5.42507779669245e-10!GO:0050136;NADH dehydrogenase (quinone) activity;6.42694471633658e-10!GO:0003954;NADH dehydrogenase activity;6.42694471633658e-10!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.42694471633658e-10!GO:0006357;regulation of transcription from RNA polymerase II promoter;7.80235936419478e-10!GO:0016564;transcription repressor activity;8.65516526416818e-10!GO:0005783;endoplasmic reticulum;9.0759183960934e-10!GO:0017038;protein import;1.16769734397327e-09!GO:0016568;chromatin modification;1.70587232683131e-09!GO:0048519;negative regulation of biological process;1.96279392653361e-09!GO:0065004;protein-DNA complex assembly;3.26940182930022e-09!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.98125880280982e-09!GO:0065002;intracellular protein transport across a membrane;4.38487457543503e-09!GO:0051186;cofactor metabolic process;5.22962943558872e-09!GO:0042775;organelle ATP synthesis coupled electron transport;6.28634168748453e-09!GO:0042773;ATP synthesis coupled electron transport;6.28634168748453e-09!GO:0016881;acid-amino acid ligase activity;7.35992245004324e-09!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.80074201584811e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.07613844367876e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.17875083361452e-08!GO:0031324;negative regulation of cellular metabolic process;1.29786419999725e-08!GO:0010468;regulation of gene expression;1.41179401929644e-08!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.53250163509258e-08!GO:0016192;vesicle-mediated transport;1.53964451896021e-08!GO:0065007;biological regulation;1.78824061502524e-08!GO:0051246;regulation of protein metabolic process;1.78991862430614e-08!GO:0016563;transcription activator activity;1.82535095103918e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.89710919052583e-08!GO:0030964;NADH dehydrogenase complex (quinone);2.07720925831733e-08!GO:0045271;respiratory chain complex I;2.07720925831733e-08!GO:0005747;mitochondrial respiratory chain complex I;2.07720925831733e-08!GO:0051028;mRNA transport;3.22552716598615e-08!GO:0046930;pore complex;3.24214683086311e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.34749522280563e-08!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.62553253963601e-08!GO:0006461;protein complex assembly;3.62553253963601e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.74008760244456e-08!GO:0004812;aminoacyl-tRNA ligase activity;3.74008760244456e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.74008760244456e-08!GO:0043566;structure-specific DNA binding;3.76251946360248e-08!GO:0032774;RNA biosynthetic process;5.08280342383781e-08!GO:0006351;transcription, DNA-dependent;6.46534773240911e-08!GO:0008565;protein transporter activity;6.79323623065606e-08!GO:0044432;endoplasmic reticulum part;6.84806847584993e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.97788585942881e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.71547758849553e-08!GO:0048522;positive regulation of cellular process;8.38802257705517e-08!GO:0032446;protein modification by small protein conjugation;8.56646093698137e-08!GO:0043038;amino acid activation;8.77270232487886e-08!GO:0006418;tRNA aminoacylation for protein translation;8.77270232487886e-08!GO:0043039;tRNA aminoacylation;8.77270232487886e-08!GO:0009055;electron carrier activity;8.91116285322401e-08!GO:0015630;microtubule cytoskeleton;1.02260396780129e-07!GO:0016567;protein ubiquitination;1.1457822136215e-07!GO:0016779;nucleotidyltransferase activity;1.50677812322779e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.63815195542337e-07!GO:0006261;DNA-dependent DNA replication;1.78077829793322e-07!GO:0043069;negative regulation of programmed cell death;2.09917559510347e-07!GO:0051170;nuclear import;2.38145391838677e-07!GO:0003714;transcription corepressor activity;2.43741875756769e-07!GO:0007005;mitochondrion organization and biogenesis;2.46795068223807e-07!GO:0009892;negative regulation of metabolic process;2.89104773492184e-07!GO:0016481;negative regulation of transcription;2.89977979115263e-07!GO:0005667;transcription factor complex;3.86137063118207e-07!GO:0006732;coenzyme metabolic process;3.88322211219375e-07!GO:0003713;transcription coactivator activity;3.95055491115173e-07!GO:0006606;protein import into nucleus;4.09525912985005e-07!GO:0043066;negative regulation of apoptosis;4.75823875790321e-07!GO:0003697;single-stranded DNA binding;5.12673926204002e-07!GO:0006916;anti-apoptosis;6.30256818062083e-07!GO:0015986;ATP synthesis coupled proton transport;7.98077407812516e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.98077407812516e-07!GO:0051427;hormone receptor binding;1.01326112359948e-06!GO:0005819;spindle;1.13469351971991e-06!GO:0005813;centrosome;1.14600986407513e-06!GO:0045449;regulation of transcription;1.21936300942853e-06!GO:0009259;ribonucleotide metabolic process;1.4754058642018e-06!GO:0019829;cation-transporting ATPase activity;1.49524647669295e-06!GO:0051188;cofactor biosynthetic process;1.59359299614167e-06!GO:0005768;endosome;1.73629698498904e-06!GO:0003724;RNA helicase activity;1.80637982779573e-06!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.9064291226729e-06!GO:0031497;chromatin assembly;2.05771880102285e-06!GO:0035257;nuclear hormone receptor binding;2.12316741713412e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.42416909572635e-06!GO:0006334;nucleosome assembly;2.53932694353908e-06!GO:0000245;spliceosome assembly;2.59479731811059e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.79147728996903e-06!GO:0045893;positive regulation of transcription, DNA-dependent;4.3343794696518e-06!GO:0006163;purine nucleotide metabolic process;4.35862451727401e-06!GO:0005793;ER-Golgi intermediate compartment;4.42846923636167e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.89854707688917e-06!GO:0045941;positive regulation of transcription;5.50197281318067e-06!GO:0009260;ribonucleotide biosynthetic process;5.82055028116438e-06!GO:0005815;microtubule organizing center;7.20457498472988e-06!GO:0009056;catabolic process;7.58713159466713e-06!GO:0006355;regulation of transcription, DNA-dependent;7.86322093595023e-06!GO:0006754;ATP biosynthetic process;8.12919935794524e-06!GO:0006753;nucleoside phosphate metabolic process;8.12919935794524e-06!GO:0048475;coated membrane;8.12919935794524e-06!GO:0030117;membrane coat;8.12919935794524e-06!GO:0016787;hydrolase activity;8.17440425544971e-06!GO:0005762;mitochondrial large ribosomal subunit;8.59972118901063e-06!GO:0000315;organellar large ribosomal subunit;8.59972118901063e-06!GO:0005789;endoplasmic reticulum membrane;9.70747076407964e-06!GO:0015078;hydrogen ion transmembrane transporter activity;9.93993301131277e-06!GO:0003682;chromatin binding;9.9454225200019e-06!GO:0003702;RNA polymerase II transcription factor activity;1.03703547930925e-05!GO:0009967;positive regulation of signal transduction;1.05011105106642e-05!GO:0006164;purine nucleotide biosynthetic process;1.05561791473671e-05!GO:0009150;purine ribonucleotide metabolic process;1.14684389197532e-05!GO:0046034;ATP metabolic process;1.15343385062688e-05!GO:0009141;nucleoside triphosphate metabolic process;1.25423376277467e-05!GO:0009108;coenzyme biosynthetic process;1.28839875403505e-05!GO:0030532;small nuclear ribonucleoprotein complex;1.29433502561099e-05!GO:0003924;GTPase activity;1.30946443516565e-05!GO:0004298;threonine endopeptidase activity;1.31082411941945e-05!GO:0006888;ER to Golgi vesicle-mediated transport;1.37088466299668e-05!GO:0005657;replication fork;1.80822520724125e-05!GO:0009199;ribonucleoside triphosphate metabolic process;1.84908551108642e-05!GO:0051168;nuclear export;1.85834155054891e-05!GO:0048518;positive regulation of biological process;1.92067811605132e-05!GO:0006950;response to stress;1.93756374488205e-05!GO:0009142;nucleoside triphosphate biosynthetic process;1.96261411779306e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.96261411779306e-05!GO:0003677;DNA binding;2.06512714787484e-05!GO:0045786;negative regulation of progression through cell cycle;2.07015298875568e-05!GO:0016469;proton-transporting two-sector ATPase complex;2.07147761572577e-05!GO:0009060;aerobic respiration;2.27514359701437e-05!GO:0030120;vesicle coat;2.29893234909431e-05!GO:0030662;coated vesicle membrane;2.29893234909431e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.4305750510624e-05!GO:0009144;purine nucleoside triphosphate metabolic process;2.4305750510624e-05!GO:0043623;cellular protein complex assembly;2.47186969494606e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.59807603938708e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.59807603938708e-05!GO:0009152;purine ribonucleotide biosynthetic process;2.74460563159534e-05!GO:0008033;tRNA processing;2.84425454450486e-05!GO:0006752;group transfer coenzyme metabolic process;2.88742069544458e-05!GO:0051329;interphase of mitotic cell cycle;3.6342045708705e-05!GO:0016363;nuclear matrix;4.16296787821055e-05!GO:0044452;nucleolar part;4.34869393335496e-05!GO:0006402;mRNA catabolic process;4.53447123938825e-05!GO:0006302;double-strand break repair;4.54523077127962e-05!GO:0000151;ubiquitin ligase complex;4.71242754931656e-05!GO:0008186;RNA-dependent ATPase activity;4.73938330836654e-05!GO:0007243;protein kinase cascade;5.05020182274183e-05!GO:0045333;cellular respiration;5.25485513115056e-05!GO:0006613;cotranslational protein targeting to membrane;5.42806775120389e-05!GO:0003690;double-stranded DNA binding;5.81101168695587e-05!GO:0045892;negative regulation of transcription, DNA-dependent;6.14581917890161e-05!GO:0045259;proton-transporting ATP synthase complex;6.33142299121351e-05!GO:0006401;RNA catabolic process;6.53742947351686e-05!GO:0051052;regulation of DNA metabolic process;6.80580810413929e-05!GO:0007051;spindle organization and biogenesis;7.31861019901719e-05!GO:0000775;chromosome, pericentric region;8.14627534632893e-05!GO:0003899;DNA-directed RNA polymerase activity;8.82136923859018e-05!GO:0006793;phosphorus metabolic process;0.000100542075552494!GO:0006796;phosphate metabolic process;0.000100542075552494!GO:0051325;interphase;0.000111596190370656!GO:0000314;organellar small ribosomal subunit;0.000122105539110529!GO:0005763;mitochondrial small ribosomal subunit;0.000122105539110529!GO:0042802;identical protein binding;0.000132348958447076!GO:0004004;ATP-dependent RNA helicase activity;0.000156568232390868!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000170960206190653!GO:0043021;ribonucleoprotein binding;0.000172874878987954!GO:0065009;regulation of a molecular function;0.000192376208736035!GO:0031252;leading edge;0.000212197338734671!GO:0005769;early endosome;0.000214629697146672!GO:0019899;enzyme binding;0.000229557282786468!GO:0044431;Golgi apparatus part;0.000233241359198761!GO:0006612;protein targeting to membrane;0.000257219544421821!GO:0003729;mRNA binding;0.00027994684749441!GO:0008094;DNA-dependent ATPase activity;0.000298885809103078!GO:0032508;DNA duplex unwinding;0.000345173128154796!GO:0032392;DNA geometric change;0.000345173128154796!GO:0030880;RNA polymerase complex;0.000366112490759654!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000378856129132286!GO:0044440;endosomal part;0.000396020575897283!GO:0010008;endosome membrane;0.000396020575897283!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000498404781129802!GO:0005525;GTP binding;0.00054674744172456!GO:0005770;late endosome;0.000599121874361474!GO:0016740;transferase activity;0.000638224754182338!GO:0000049;tRNA binding;0.000638224754182338!GO:0016251;general RNA polymerase II transcription factor activity;0.000640303406291279!GO:0009893;positive regulation of metabolic process;0.000675530386195255!GO:0048471;perinuclear region of cytoplasm;0.000712656697723678!GO:0004527;exonuclease activity;0.00074666783758909!GO:0006352;transcription initiation;0.000796745750702774!GO:0016310;phosphorylation;0.000848451147007663!GO:0005048;signal sequence binding;0.000848451147007663!GO:0006268;DNA unwinding during replication;0.000852239656116311!GO:0043065;positive regulation of apoptosis;0.000881616464524487!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000910958772914745!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000930429655924983!GO:0000428;DNA-directed RNA polymerase complex;0.000930429655924983!GO:0006099;tricarboxylic acid cycle;0.000934078982920342!GO:0046356;acetyl-CoA catabolic process;0.000934078982920342!GO:0043681;protein import into mitochondrion;0.00098453755316361!GO:0031988;membrane-bound vesicle;0.00118451692254396!GO:0048468;cell development;0.00120349071526932!GO:0043068;positive regulation of programmed cell death;0.00127962170014476!GO:0007088;regulation of mitosis;0.00130301759620856!GO:0008654;phospholipid biosynthetic process;0.00131256287752849!GO:0008632;apoptotic program;0.00132304657847378!GO:0045454;cell redox homeostasis;0.00134773501035643!GO:0051252;regulation of RNA metabolic process;0.00134844656271108!GO:0005773;vacuole;0.00139994272996886!GO:0008139;nuclear localization sequence binding;0.00140786119961685!GO:0009117;nucleotide metabolic process;0.00148600813590739!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00157494568109493!GO:0042770;DNA damage response, signal transduction;0.00163287087226928!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00163287087226928!GO:0016023;cytoplasmic membrane-bound vesicle;0.00168434771354982!GO:0007264;small GTPase mediated signal transduction;0.0016880960012637!GO:0008250;oligosaccharyl transferase complex;0.00173523745611443!GO:0006839;mitochondrial transport;0.00177587934101364!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00180282892957866!GO:0000075;cell cycle checkpoint;0.00185400062833897!GO:0000786;nucleosome;0.00187531726575445!GO:0051789;response to protein stimulus;0.00189050498258672!GO:0006986;response to unfolded protein;0.00189050498258672!GO:0005885;Arp2/3 protein complex;0.00195986816364523!GO:0006310;DNA recombination;0.00197690923435771!GO:0006084;acetyl-CoA metabolic process;0.00202524497526556!GO:0006405;RNA export from nucleus;0.00204331169331139!GO:0031325;positive regulation of cellular metabolic process;0.00206353127472022!GO:0009109;coenzyme catabolic process;0.00209674521106676!GO:0030867;rough endoplasmic reticulum membrane;0.00214996353882706!GO:0051101;regulation of DNA binding;0.0021905810717589!GO:0005788;endoplasmic reticulum lumen;0.0021905810717589!GO:0006417;regulation of translation;0.00233596042165833!GO:0004518;nuclease activity;0.00234942157747425!GO:0051187;cofactor catabolic process;0.00243967823658298!GO:0032984;macromolecular complex disassembly;0.00245291687775777!GO:0046966;thyroid hormone receptor binding;0.00256694434813636!GO:0030118;clathrin coat;0.00268802511319923!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00272964190922506!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00301303925991302!GO:0007052;mitotic spindle organization and biogenesis;0.0030294609301519!GO:0001726;ruffle;0.00305030379955822!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00308170590996019!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00308170590996019!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00308170590996019!GO:0031072;heat shock protein binding;0.00315634305462738!GO:0003678;DNA helicase activity;0.00316617265269142!GO:0006607;NLS-bearing substrate import into nucleus;0.00335766510078237!GO:0007010;cytoskeleton organization and biogenesis;0.00343845177542864!GO:0000139;Golgi membrane;0.00360634609955778!GO:0035258;steroid hormone receptor binding;0.00360634609955778!GO:0043488;regulation of mRNA stability;0.00362995706529428!GO:0043487;regulation of RNA stability;0.00362995706529428!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00364868703023797!GO:0006383;transcription from RNA polymerase III promoter;0.00367125983055521!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00369308474553347!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00370634177583964!GO:0000776;kinetochore;0.00374633486426933!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00387011486755929!GO:0006626;protein targeting to mitochondrion;0.00396611543653776!GO:0043624;cellular protein complex disassembly;0.00406376822197139!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.00406580191667121!GO:0009615;response to virus;0.00416410764336227!GO:0031982;vesicle;0.00416410764336227!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00421102367570977!GO:0051098;regulation of binding;0.00443785695624956!GO:0051087;chaperone binding;0.00445254515562386!GO:0006275;regulation of DNA replication;0.00450692827201177!GO:0003684;damaged DNA binding;0.00455317415288049!GO:0000323;lytic vacuole;0.00456503380891857!GO:0005764;lysosome;0.00456503380891857!GO:0048500;signal recognition particle;0.0046372128863757!GO:0032561;guanyl ribonucleotide binding;0.00473633076127941!GO:0019001;guanyl nucleotide binding;0.00473633076127941!GO:0030521;androgen receptor signaling pathway;0.00473633076127941!GO:0043241;protein complex disassembly;0.00473633076127941!GO:0006289;nucleotide-excision repair;0.00482513165964728!GO:0019843;rRNA binding;0.00491443250802236!GO:0005669;transcription factor TFIID complex;0.00491472179259776!GO:0005798;Golgi-associated vesicle;0.00506586427617217!GO:0006338;chromatin remodeling;0.00543684886124796!GO:0008408;3'-5' exonuclease activity;0.00545130785262004!GO:0008312;7S RNA binding;0.00546544306427269!GO:0007059;chromosome segregation;0.00548518823872481!GO:0003746;translation elongation factor activity;0.00553433880693793!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00589946930294294!GO:0004576;oligosaccharyl transferase activity;0.00589946930294294!GO:0000178;exosome (RNase complex);0.00596542022118473!GO:0009116;nucleoside metabolic process;0.0060227077275981!GO:0033116;ER-Golgi intermediate compartment membrane;0.00607234406977552!GO:0006414;translational elongation;0.00607234406977552!GO:0008361;regulation of cell size;0.00612217578216381!GO:0030031;cell projection biogenesis;0.00627399206010637!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0064530010278573!GO:0006400;tRNA modification;0.00650969419329433!GO:0006611;protein export from nucleus;0.00654797977162305!GO:0009889;regulation of biosynthetic process;0.0065979598986976!GO:0031968;organelle outer membrane;0.00666597336315215!GO:0016584;nucleosome positioning;0.00683738061604171!GO:0030119;AP-type membrane coat adaptor complex;0.00697352380228385!GO:0031410;cytoplasmic vesicle;0.00699303295429057!GO:0008234;cysteine-type peptidase activity;0.00718326572062506!GO:0031326;regulation of cellular biosynthetic process;0.00746594113551239!GO:0030131;clathrin adaptor complex;0.00785091141928785!GO:0051920;peroxiredoxin activity;0.00785091141928785!GO:0005741;mitochondrial outer membrane;0.00805946505975505!GO:0030036;actin cytoskeleton organization and biogenesis;0.00818978980551621!GO:0046483;heterocycle metabolic process;0.00818978980551621!GO:0004532;exoribonuclease activity;0.00844081861025534!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00844081861025534!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00859634720647031!GO:0009451;RNA modification;0.00893551586653326!GO:0008168;methyltransferase activity;0.00900995844242285!GO:0016197;endosome transport;0.00916094225192542!GO:0019867;outer membrane;0.00919501291620027!GO:0050790;regulation of catalytic activity;0.00943532361083402!GO:0018196;peptidyl-asparagine modification;0.00943532361083402!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00943532361083402!GO:0003725;double-stranded RNA binding;0.00944843312922209!GO:0000725;recombinational repair;0.0095154913885537!GO:0000724;double-strand break repair via homologous recombination;0.0095154913885537!GO:0022411;cellular component disassembly;0.0096319663897439!GO:0030518;steroid hormone receptor signaling pathway;0.00968204123585297!GO:0000792;heterochromatin;0.00968204123585297!GO:0016741;transferase activity, transferring one-carbon groups;0.00973230522599598!GO:0008629;induction of apoptosis by intracellular signals;0.00973230522599598!GO:0040029;regulation of gene expression, epigenetic;0.0103071456484891!GO:0005874;microtubule;0.0103382440889742!GO:0006354;RNA elongation;0.0104265801366154!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.010564458123139!GO:0032200;telomere organization and biogenesis;0.0108001866402074!GO:0000723;telomere maintenance;0.0108001866402074!GO:0005856;cytoskeleton;0.0109882694057099!GO:0000082;G1/S transition of mitotic cell cycle;0.0110521549755076!GO:0042393;histone binding;0.0110848763269823!GO:0016859;cis-trans isomerase activity;0.011214020913254!GO:0016853;isomerase activity;0.0116081906310257!GO:0016049;cell growth;0.0116081906310257!GO:0046822;regulation of nucleocytoplasmic transport;0.011611791151181!GO:0000922;spindle pole;0.0117562447663019!GO:0005905;coated pit;0.0118006157943248!GO:0031124;mRNA 3'-end processing;0.0118200656403816!GO:0031625;ubiquitin protein ligase binding;0.0123583968051302!GO:0007004;telomere maintenance via telomerase;0.0123613101062091!GO:0006376;mRNA splice site selection;0.0127397655017959!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0127397655017959!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0128193955762734!GO:0045047;protein targeting to ER;0.0128193955762734!GO:0006891;intra-Golgi vesicle-mediated transport;0.0128762659220296!GO:0051338;regulation of transferase activity;0.0130579609536605!GO:0000059;protein import into nucleus, docking;0.0131115816181592!GO:0007006;mitochondrial membrane organization and biogenesis;0.0133279251792674!GO:0007093;mitotic cell cycle checkpoint;0.0138916481053588!GO:0005791;rough endoplasmic reticulum;0.0140228813306057!GO:0005684;U2-dependent spliceosome;0.0142859160858461!GO:0031570;DNA integrity checkpoint;0.0143572683426052!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.014994504930268!GO:0033673;negative regulation of kinase activity;0.0150370570012884!GO:0006469;negative regulation of protein kinase activity;0.0150370570012884!GO:0043022;ribosome binding;0.0150868168077918!GO:0001558;regulation of cell growth;0.0153600175871195!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0154023922061579!GO:0003711;transcription elongation regulator activity;0.0154220228996413!GO:0022890;inorganic cation transmembrane transporter activity;0.0159279601842673!GO:0051053;negative regulation of DNA metabolic process;0.0161366504881294!GO:0016272;prefoldin complex;0.0161627172449063!GO:0009112;nucleobase metabolic process;0.0161627172449063!GO:0030134;ER to Golgi transport vesicle;0.0164131376815896!GO:0006270;DNA replication initiation;0.0166423036545774!GO:0051540;metal cluster binding;0.0166812838427413!GO:0051536;iron-sulfur cluster binding;0.0166812838427413!GO:0046489;phosphoinositide biosynthetic process;0.0169210061978042!GO:0043414;biopolymer methylation;0.0172934984952275!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0173151246588279!GO:0015631;tubulin binding;0.0174012920370443!GO:0030132;clathrin coat of coated pit;0.0175685004774165!GO:0000781;chromosome, telomeric region;0.0175699517027091!GO:0030663;COPI coated vesicle membrane;0.0175717344444287!GO:0030126;COPI vesicle coat;0.0175717344444287!GO:0006360;transcription from RNA polymerase I promoter;0.0177325751680763!GO:0008180;signalosome;0.0180001834982267!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0188804185307141!GO:0007265;Ras protein signal transduction;0.0189441809687177!GO:0008637;apoptotic mitochondrial changes;0.0197861288420194!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0199068725330263!GO:0005876;spindle microtubule;0.0207693117734708!GO:0006917;induction of apoptosis;0.0209678866877348!GO:0006595;polyamine metabolic process;0.0212321293752066!GO:0050681;androgen receptor binding;0.0214454848478235!GO:0043549;regulation of kinase activity;0.0222350995998328!GO:0046983;protein dimerization activity;0.0225044092651036!GO:0051348;negative regulation of transferase activity;0.0225615846931204!GO:0048144;fibroblast proliferation;0.0225651890207174!GO:0048145;regulation of fibroblast proliferation;0.0225651890207174!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.022725786871774!GO:0032259;methylation;0.022725786871774!GO:0016281;eukaryotic translation initiation factor 4F complex;0.022725786871774!GO:0048487;beta-tubulin binding;0.0229136483885831!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.023243287413719!GO:0015399;primary active transmembrane transporter activity;0.023243287413719!GO:0048146;positive regulation of fibroblast proliferation;0.0233258142900878!GO:0005832;chaperonin-containing T-complex;0.0233619716018088!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0239840695294862!GO:0030137;COPI-coated vesicle;0.0241145187128764!GO:0042585;germinal vesicle;0.0241677175579996!GO:0030127;COPII vesicle coat;0.0243223062303079!GO:0012507;ER to Golgi transport vesicle membrane;0.0243223062303079!GO:0001836;release of cytochrome c from mitochondria;0.02441524429582!GO:0000175;3'-5'-exoribonuclease activity;0.0246260750503014!GO:0043596;nuclear replication fork;0.0248152050142649!GO:0006378;mRNA polyadenylation;0.0251611179311189!GO:0007030;Golgi organization and biogenesis;0.0253450799704673!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0254158766127412!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0254158766127412!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0255460124369145!GO:0046474;glycerophospholipid biosynthetic process;0.0256955332816245!GO:0006979;response to oxidative stress;0.0262002035038383!GO:0012502;induction of programmed cell death;0.026308924330184!GO:0022415;viral reproductive process;0.0272815596450765!GO:0008538;proteasome activator activity;0.0276984621925283!GO:0008601;protein phosphatase type 2A regulator activity;0.0280868658163728!GO:0008270;zinc ion binding;0.0284037445545878!GO:0015992;proton transport;0.0284383862895095!GO:0051128;regulation of cellular component organization and biogenesis;0.0287040064470413!GO:0006984;ER-nuclear signaling pathway;0.0287040064470413!GO:0031123;RNA 3'-end processing;0.0292304608639698!GO:0007266;Rho protein signal transduction;0.0293027570374645!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.02983140353278!GO:0005149;interleukin-1 receptor binding;0.02983140353278!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0300148346323591!GO:0006818;hydrogen transport;0.0301480373548659!GO:0030658;transport vesicle membrane;0.030287855736689!GO:0008022;protein C-terminus binding;0.0305763512699191!GO:0031529;ruffle organization and biogenesis;0.0306768262885876!GO:0030032;lamellipodium biogenesis;0.0308101570978394!GO:0019783;small conjugating protein-specific protease activity;0.0319619213700478!GO:0030029;actin filament-based process;0.033284889038996!GO:0046467;membrane lipid biosynthetic process;0.0346275039265569!GO:0005862;muscle thin filament tropomyosin;0.0346755660363881!GO:0008283;cell proliferation;0.0347444674618887!GO:0008156;negative regulation of DNA replication;0.0349904456071725!GO:0000077;DNA damage checkpoint;0.03509882290905!GO:0047485;protein N-terminus binding;0.0356533815075886!GO:0000339;RNA cap binding;0.0362948723770347!GO:0030384;phosphoinositide metabolic process;0.0364449337433957!GO:0004540;ribonuclease activity;0.0365521731907798!GO:0006284;base-excision repair;0.036559825804897!GO:0045859;regulation of protein kinase activity;0.0366756131431088!GO:0008426;protein kinase C inhibitor activity;0.0373181135422332!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.03755500380025!GO:0015002;heme-copper terminal oxidase activity;0.03755500380025!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.03755500380025!GO:0004129;cytochrome-c oxidase activity;0.03755500380025!GO:0006144;purine base metabolic process;0.0376804021217927!GO:0004674;protein serine/threonine kinase activity;0.0377826836341556!GO:0030522;intracellular receptor-mediated signaling pathway;0.0379805113567508!GO:0016044;membrane organization and biogenesis;0.0387927421211707!GO:0006520;amino acid metabolic process;0.0397931471192166!GO:0043331;response to dsRNA;0.0400738605695004!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0401083313189792!GO:0030133;transport vesicle;0.0403609470119713!GO:0016791;phosphoric monoester hydrolase activity;0.0409458072098254!GO:0009165;nucleotide biosynthetic process;0.0413529629467317!GO:0004843;ubiquitin-specific protease activity;0.0417825126972797!GO:0000086;G2/M transition of mitotic cell cycle;0.0423426878596667!GO:0006730;one-carbon compound metabolic process;0.0428603489237541!GO:0005637;nuclear inner membrane;0.0431869294649521!GO:0007050;cell cycle arrest;0.0431948964926213!GO:0032507;maintenance of cellular protein localization;0.0435426592869404!GO:0030224;monocyte differentiation;0.0437927595614243!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0442183624560644!GO:0008276;protein methyltransferase activity;0.0444868833230438!GO:0000209;protein polyubiquitination;0.0449396273146348!GO:0051287;NAD binding;0.0467266255206787!GO:0008092;cytoskeletal protein binding;0.0472753622847187!GO:0017166;vinculin binding;0.0472753622847187!GO:0001832;blastocyst growth;0.0490115919128893!GO:0009119;ribonucleoside metabolic process;0.0496216778958547
|sample_id=10412
|sample_note=machine failed, remainder reloaded, low amount
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=hair follicle
|top_motifs=TBX4,5:1.91253225193;IRF7:1.75219240991;ZEB1:1.71246957667;bHLH_family:1.67568738597;ADNP_IRX_SIX_ZHX:1.6661465009;SNAI1..3:1.62316361665;VSX1,2:1.44428552858;RBPJ:1.43296953676;TP53:1.34698100844;POU1F1:1.31146039853;ZNF148:1.12105321735;ELK1,4_GABP{A,B1}:1.09596597469;PITX1..3:1.0200111651;CEBPA,B_DDIT3:0.963425872828;TEAD1:0.955326669572;FOXN1:0.939848064163;PDX1:0.906759898973;MYOD1:0.89709044638;YY1:0.888302878667;E2F1..5:0.853275695389;POU2F1..3:0.818131107722;NKX6-1,2:0.795047247526;IRF1,2:0.781558737926;TFDP1:0.781308030842;EP300:0.777544260306;TFAP2{A,C}:0.774250949299;FOXQ1:0.769129690233;FOXO1,3,4:0.764816328056;FOS_FOS{B,L1}_JUN{B,D}:0.750393212505;NR6A1:0.727781101561;CDC5L:0.68757531595;ATF4:0.658341121704;FOSL2:0.614470306447;STAT5{A,B}:0.569896030907;BACH2:0.560595526512;FOXP1:0.547337182597;NANOG:0.538126463099;FOXA2:0.482507762099;NKX2-1,4:0.477988900231;FOXM1:0.45806541932;AHR_ARNT_ARNT2:0.450345296263;ATF2:0.413802347627;FOX{I1,J2}:0.386988571861;OCT4_SOX2{dimer}:0.385844608208;HLF:0.361920995425;ZBTB6:0.35055378354;NFY{A,B,C}:0.349650078518;EN1,2:0.347411360972;IKZF1:0.345699568356;RORA:0.341639657569;PAX2:0.337810107251;NKX2-3_NKX2-5:0.336150091197;TLX1..3_NFIC{dimer}:0.333971189971;NFE2:0.328386530729;GLI1..3:0.327088018264;HIF1A:0.308760451454;SOX2:0.305750507391;FOX{D1,D2}:0.304966585674;FOXD3:0.301371255534;MED-1{core}:0.301103399101;HBP1_HMGB_SSRP1_UBTF:0.295794993093;POU5F1:0.266014280055;GFI1B:0.226363045083;MYBL2:0.216508707902;POU6F1:0.213890649499;ATF5_CREB3:0.185839039622;TBP:0.185331084993;NFKB1_REL_RELA:0.169347517136;HOXA9_MEIS1:0.168922840842;NKX2-2,8:0.142411989154;GFI1:0.142080546681;ELF1,2,4:0.131601399728;SMAD1..7,9:0.117624851162;CRX:0.0965551621785;ZNF143:0.0932391214643;PRRX1,2:0.0664940182506;HAND1,2:0.0630620766731;SOX17:0.0342595920785;HOX{A6,A7,B6,B7}:0.00608878628209;LMO2:-0.000531745704037;HMGA1,2:-0.00503160211274;ONECUT1,2:-0.0171709595852;STAT2,4,6:-0.0308842720146;LHX3,4:-0.0414698427755;HNF1A:-0.05261772954;GTF2A1,2:-0.0537746802274;SOX{8,9,10}:-0.0669521429432;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0739449304173;GCM1,2:-0.084155872924;MYB:-0.0927481168502;GTF2I:-0.128914429571;BPTF:-0.136996542399;ETS1,2:-0.13739051241;DMAP1_NCOR{1,2}_SMARC:-0.139206549396;STAT1,3:-0.154008923131;NFIL3:-0.161273298201;ZNF238:-0.165272357876;ZNF384:-0.170255854468;ZFP161:-0.173280332965;PAX8:-0.178766050394;AIRE:-0.179492771098;PBX1:-0.183275514927;NFIX:-0.190967040297;EBF1:-0.209172297079;FOX{F1,F2,J1}:-0.222540627991;PRDM1:-0.223268095024;MTF1:-0.225229113823;PAX1,9:-0.236913326506;MTE{core}:-0.244977998816;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.253518642655;RFX1:-0.256470054808;MAZ:-0.259322041621;MEF2{A,B,C,D}:-0.259650132208;LEF1_TCF7_TCF7L1,2:-0.263851704592;RUNX1..3:-0.28338621513;RFX2..5_RFXANK_RFXAP:-0.286489895557;NRF1:-0.288016881195;ARID5B:-0.289471802135;JUN:-0.289605719331;SPIB:-0.30099569609;GATA6:-0.308284420364;ZNF423:-0.30976157073;DBP:-0.310068669807;MYFfamily:-0.31569036818;PPARG:-0.321765717345;SREBF1,2:-0.331591827585;PAX4:-0.35281905292;NFE2L2:-0.359993396434;TFAP2B:-0.372704639306;TOPORS:-0.380431495394;ESRRA:-0.393497017391;NKX3-2:-0.403613985216;SPI1:-0.409755407786;HOX{A5,B5}:-0.415096586739;TLX2:-0.422619191548;ZBTB16:-0.427579773013;CUX2:-0.427888562782;MZF1:-0.428638594796;CREB1:-0.433343718892;GZF1:-0.447786686621;NR3C1:-0.448280944303;ATF6:-0.457072283466;HOX{A4,D4}:-0.462345156172;FOXL1:-0.464543459366;HNF4A_NR2F1,2:-0.473511502011;PAX3,7:-0.478522897444;HES1:-0.490798852871;NKX3-1:-0.498735938845;RREB1:-0.507692263037;XCPE1{core}:-0.511013681696;NR5A1,2:-0.513340637087;SOX5:-0.513595082782;REST:-0.520041433443;BREu{core}:-0.522078433609;TFCP2:-0.529006153052;HSF1,2:-0.5458990035;T:-0.563812627281;AR:-0.571014124332;HIC1:-0.576385489892;SRF:-0.587205368407;SP1:-0.587953564229;ESR1:-0.599378777212;ALX1:-0.635753969863;MAFB:-0.680563747821;TEF:-0.707558403451;IKZF2:-0.711182346685;GATA4:-0.82553294186;NFATC1..3:-0.828792315594;NHLH1,2:-0.831838060831;EGR1..3:-0.842159275805;TFAP4:-0.844683189479;TGIF1:-0.853987567323;PATZ1:-0.85546605466;UFEwm:-0.858625774439;NR1H4:-0.867846288489;CDX1,2,4:-0.876731284768;KLF4:-0.913699078791;PAX6:-0.921301729475;ALX4:-0.926351751786;FOXP3:-0.979365168625;RXR{A,B,G}:-1.06751927158;TAL1_TCF{3,4,12}:-1.11285435545;ZIC1..3:-1.11941649136;HMX1:-1.25587391238;NFE2L1:-1.305809194;EVI1:-1.32118949944;POU3F1..4:-1.32599303148;XBP1:-1.36020802472;SPZ1:-1.42368861898;RXRA_VDR{dimer}:-1.42731028826;PAX5:-1.54227010165;NANOG{mouse}:-2.07037368015
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10412-106B7;search_select_hide=table117:FF:10412-106B7
}}
}}

Latest revision as of 13:59, 3 June 2020

Name:malignant trichilemmal cyst cell line:DJM-1
Species:Human (Homo sapiens)
Library ID:CNhs10730
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuehair follicle
dev stage87 year old adult
sexfemale
age87
cell typehair follicle, outer root sheath cell
cell lineDJM-1
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005019
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10730 CAGE DRX007926 DRR008798
Accession ID Hg19

Library idBAMCTSS
CNhs10730 DRZ000223 DRZ001608
Accession ID Hg38

Library idBAMCTSS
CNhs10730 DRZ011573 DRZ012958
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10054downloaddownloaddownloaddownload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.4
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.168
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.059
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0536
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.214
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0791
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.829
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0358
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.306
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10730

Jaspar motifP-value
MA0002.20.495
MA0003.10.477
MA0004.10.323
MA0006.10.353
MA0007.10.0668
MA0009.10.394
MA0014.10.567
MA0017.10.408
MA0018.20.657
MA0019.10.139
MA0024.10.0222
MA0025.10.113
MA0027.10.525
MA0028.12.75103e-5
MA0029.10.56
MA0030.10.346
MA0031.10.0251
MA0035.20.891
MA0038.10.0818
MA0039.20.0305
MA0040.10.738
MA0041.10.636
MA0042.10.789
MA0043.10.649
MA0046.10.259
MA0047.20.24
MA0048.10.948
MA0050.12.49677e-10
MA0051.11.86609e-9
MA0052.10.911
MA0055.10.118
MA0057.10.405
MA0058.10.607
MA0059.10.284
MA0060.10.00345
MA0061.10.397
MA0062.21.62871e-4
MA0065.20.496
MA0066.10.151
MA0067.10.204
MA0068.10.835
MA0069.10.0765
MA0070.10.848
MA0071.10.302
MA0072.10.814
MA0073.10.947
MA0074.10.348
MA0076.11.69639e-5
MA0077.10.67
MA0078.10.7
MA0079.20.261
MA0080.20.291
MA0081.10.346
MA0083.10.367
MA0084.10.13
MA0087.10.693
MA0088.10.24
MA0090.10.00226
MA0091.10.00339
MA0092.10.817
MA0093.10.42
MA0099.22.08806e-13
MA0100.10.162
MA0101.10.346
MA0102.20.481
MA0103.14.14076e-6
MA0104.20.0736
MA0105.10.22
MA0106.10.00101
MA0107.10.264
MA0108.20.939
MA0111.10.227
MA0112.20.744
MA0113.10.0433
MA0114.10.766
MA0115.10.757
MA0116.10.16
MA0117.10.399
MA0119.10.0596
MA0122.10.315
MA0124.10.879
MA0125.10.477
MA0131.10.851
MA0135.10.446
MA0136.10.206
MA0137.20.192
MA0138.20.0785
MA0139.10.107
MA0140.10.278
MA0141.10.0684
MA0142.10.0345
MA0143.10.995
MA0144.10.609
MA0145.10.0329
MA0146.10.649
MA0147.10.0443
MA0148.10.0454
MA0149.10.0366
MA0150.10.146
MA0152.10.321
MA0153.10.478
MA0154.10.865
MA0155.10.166
MA0156.10.0039
MA0157.10.054
MA0159.10.109
MA0160.10.988
MA0162.10.942
MA0163.10.532
MA0164.10.498
MA0258.10.159
MA0259.10.564



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10730

Novel motifP-value
10.608
100.553
1000.417
1010.428
1020.362
1030.92
1040.341
1050.3
1060.305
1070.253
1080.881
1090.266
110.179
1100.688
1110.403
1120.301
1130.297
1140.206
1150.708
1160.102
1170.923
1180.434
1190.786
120.355
1200.855
1210.836
1220.328
1230.0621
1240.858
1250.382
1260.847
1270.62
1280.842
1290.225
130.00269
1300.256
1310.64
1320.998
1330.0219
1340.127
1350.717
1360.958
1370.233
1380.63
1390.101
140.97
1400.629
1410.426
1420.928
1430.19
1440.0771
1450.588
1460.277
1470.682
1480.899
1490.25
150.845
1500.203
1510.235
1520.616
1530.977
1540.88
1550.789
1560.652
1570.855
1580.65
1590.317
160.999
1600.605
1610.25
1620.111
1630.465
1640.498
1650.835
1660.727
1670.354
1680.729
1690.674
170.342
180.454
190.0863
20.702
200.879
210.645
220.56
230.201
240.134
250.625
260.198
270.925
280.222
290.104
30.827
300.351
310.221
320.00144
330.213
340.185
350.413
360.0962
370.715
380.42
390.856
40.801
400.336
410.226
420.27
430.904
440.0791
450.13
460.994
470.863
480.828
490.828
50.776
500.274
510.308
520.207
530.407
540.221
550.328
560.307
570.111
580.465
590.122
60.84
600.227
610.701
620.9
630.319
640.841
650.775
660.00216
670.465
680.0284
690.468
70.205
700.108
710.545
720.814
730.945
740.239
750.00716
760.776
770.283
780.0178
791.99766e-4
80.162
800.887
810.153
820.118
830.709
840.972
850.209
860.574
870.336
880.756
890.579
90.381
900.779
910.0358
920.992
930.998
940.741
950.879
960.305
970.277
980.713
990.998



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10730


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
1749 (squamous cell carcinoma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0101120 (epithelial cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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