FF:10433-106E1: Difference between revisions

Latest revision as of 14:01, 3 June 2020

Name:	giant cell carcinoma cell line:Lu99B
Species:	Human (Homo sapiens)
Library ID:	CNhs10751
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	lung
dev stage	63 year old adult
sex	male
age	63
cell type	unclassifiable
cell line	Lu99B
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005274

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10751		CAGE		DRX007895		DRR008767

Accession ID Hg19

Library id		BAM		CTSS
CNhs10751		DRZ000192		DRZ001577

Accession ID Hg38

Library id		BAM		CTSS
CNhs10751		DRZ011542		DRZ012927

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0542
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.0509
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0691
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.185
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.0362
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.254
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.321
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.376
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0509
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.139
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0509
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10751

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0805
MA0003.1	MA0003.1	0.0532
MA0004.1	MA0004.1	0.236
MA0006.1	MA0006.1	0.618
MA0007.1	MA0007.1	0.431
MA0009.1	MA0009.1	0.826
MA0014.1	MA0014.1	0.674
MA0017.1	MA0017.1	0.61
MA0018.2	MA0018.2	0.289
MA0019.1	MA0019.1	0.232
MA0024.1	MA0024.1	0.549
MA0025.1	MA0025.1	0.9
MA0027.1	MA0027.1	0.562
MA0028.1	MA0028.1	5.92746e-5
MA0029.1	MA0029.1	0.854
MA0030.1	MA0030.1	0.143
MA0031.1	MA0031.1	0.193
MA0035.2	MA0035.2	0.585
MA0038.1	MA0038.1	0.401
MA0039.2	MA0039.2	0.014
MA0040.1	MA0040.1	0.496
MA0041.1	MA0041.1	0.654
MA0042.1	MA0042.1	0.986
MA0043.1	MA0043.1	0.168
MA0046.1	MA0046.1	0.873
MA0047.2	MA0047.2	0.878
MA0048.1	MA0048.1	0.0102
MA0050.1	MA0050.1	3.57849e-5
MA0051.1	MA0051.1	0.195
MA0052.1	MA0052.1	0.162
MA0055.1	MA0055.1	0.00185
MA0057.1	MA0057.1	0.792
MA0058.1	MA0058.1	0.325
MA0059.1	MA0059.1	0.815
MA0060.1	MA0060.1	0.16
MA0061.1	MA0061.1	0.276
MA0062.2	MA0062.2	1.65609e-4
MA0065.2	MA0065.2	0.941
MA0066.1	MA0066.1	0.502
MA0067.1	MA0067.1	0.766
MA0068.1	MA0068.1	0.747
MA0069.1	MA0069.1	0.942
MA0070.1	MA0070.1	0.0364
MA0071.1	MA0071.1	0.78
MA0072.1	MA0072.1	0.521
MA0073.1	MA0073.1	0.859
MA0074.1	MA0074.1	0.301
MA0076.1	MA0076.1	8.60947e-4
MA0077.1	MA0077.1	0.769
MA0078.1	MA0078.1	0.856
MA0079.2	MA0079.2	0.421
MA0080.2	MA0080.2	0.00702
MA0081.1	MA0081.1	0.779
MA0083.1	MA0083.1	0.0699
MA0084.1	MA0084.1	0.319
MA0087.1	MA0087.1	0.401
MA0088.1	MA0088.1	0.262
MA0090.1	MA0090.1	0.0888
MA0091.1	MA0091.1	0.042
MA0092.1	MA0092.1	0.174
MA0093.1	MA0093.1	0.163
MA0099.2	MA0099.2	9.55393e-13
MA0100.1	MA0100.1	0.61
MA0101.1	MA0101.1	0.911
MA0102.2	MA0102.2	0.505
MA0103.1	MA0103.1	0.194
MA0104.2	MA0104.2	0.583
MA0105.1	MA0105.1	0.00386
MA0106.1	MA0106.1	0.119
MA0107.1	MA0107.1	0.991
MA0108.2	MA0108.2	0.429
MA0111.1	MA0111.1	0.39
MA0112.2	MA0112.2	0.0288
MA0113.1	MA0113.1	0.104
MA0114.1	MA0114.1	0.372
MA0115.1	MA0115.1	0.708
MA0116.1	MA0116.1	0.0381
MA0117.1	MA0117.1	0.452
MA0119.1	MA0119.1	0.837
MA0122.1	MA0122.1	0.166
MA0124.1	MA0124.1	0.818
MA0125.1	MA0125.1	0.745
MA0131.1	MA0131.1	0.75
MA0135.1	MA0135.1	0.87
MA0136.1	MA0136.1	0.834
MA0137.2	MA0137.2	0.126
MA0138.2	MA0138.2	0.695
MA0139.1	MA0139.1	0.73
MA0140.1	MA0140.1	0.716
MA0141.1	MA0141.1	0.373
MA0142.1	MA0142.1	0.00625
MA0143.1	MA0143.1	0.779
MA0144.1	MA0144.1	0.585
MA0145.1	MA0145.1	0.577
MA0146.1	MA0146.1	0.16
MA0147.1	MA0147.1	0.695
MA0148.1	MA0148.1	0.892
MA0149.1	MA0149.1	0.128
MA0150.1	MA0150.1	1.54037e-4
MA0152.1	MA0152.1	0.382
MA0153.1	MA0153.1	0.86
MA0154.1	MA0154.1	0.0336
MA0155.1	MA0155.1	0.775
MA0156.1	MA0156.1	0.068
MA0157.1	MA0157.1	0.799
MA0159.1	MA0159.1	0.986
MA0160.1	MA0160.1	0.536
MA0162.1	MA0162.1	0.153
MA0163.1	MA0163.1	0.00829
MA0164.1	MA0164.1	0.415
MA0258.1	MA0258.1	0.0686
MA0259.1	MA0259.1	0.672

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10751

Novel motif	Logo	P-value
1	1	0.743
10	10	0.994
100	100	0.661
101	101	0.835
102	102	0.63
103	103	0.0869
104	104	0.683
105	105	0.803
106	106	0.481
107	107	0.575
108	108	0.952
109	109	0.804
11	11	0.275
110	110	0.773
111	111	0.623
112	112	0.128
113	113	0.106
114	114	0.357
115	115	0.136
116	116	0.181
117	117	0.129
118	118	0.285
119	119	0.54
12	12	0.756
120	120	0.48
121	121	0.777
122	122	0.673
123	123	0.43
124	124	0.743
125	125	0.232
126	126	0.433
127	127	0.321
128	128	0.0346
129	129	0.837
13	13	0.356
130	130	0.455
131	131	0.415
132	132	0.742
133	133	0.0458
134	134	0.471
135	135	0.00324
136	136	0.201
137	137	0.614
138	138	0.935
139	139	0.621
14	14	0.986
140	140	0.0705
141	141	0.631
142	142	0.00707
143	143	0.118
144	144	0.357
145	145	0.792
146	146	0.324
147	147	0.465
148	148	0.107
149	149	0.0387
15	15	0.933
150	150	0.481
151	151	0.402
152	152	0.424
153	153	0.833
154	154	0.391
155	155	0.418
156	156	0.919
157	157	0.354
158	158	0.503
159	159	0.918
16	16	0.165
160	160	0.771
161	161	0.686
162	162	0.556
163	163	0.741
164	164	0.367
165	165	0.768
166	166	0.75
167	167	0.245
168	168	0.497
169	169	0.714
17	17	0.942
18	18	0.218
19	19	0.0839
2	2	0.199
20	20	0.0167
21	21	0.398
22	22	0.958
23	23	0.15
24	24	0.388
25	25	0.0703
26	26	0.0645
27	27	0.0115
28	28	0.356
29	29	0.986
3	3	0.945
30	30	0.807
31	31	0.344
32	32	1.4571e-5
33	33	0.163
34	34	0.518
35	35	0.234
36	36	0.708
37	37	0.53
38	38	0.927
39	39	0.957
4	4	0.624
40	40	0.461
41	41	0.0662
42	42	0.692
43	43	0.0432
44	44	0.399
45	45	0.845
46	46	0.11
47	47	0.975
48	48	0.734
49	49	0.348
5	5	0.174
50	50	0.048
51	51	0.901
52	52	0.572
53	53	0.646
54	54	0.6
55	55	0.843
56	56	0.758
57	57	0.436
58	58	0.128
59	59	0.00998
6	6	0.742
60	60	0.22
61	61	0.0941
62	62	0.0114
63	63	0.496
64	64	0.118
65	65	0.128
66	66	0.407
67	67	0.28
68	68	0.158
69	69	0.723
7	7	0.226
70	70	0.959
71	71	0.121
72	72	0.757
73	73	0.685
74	74	0.84
75	75	0.524
76	76	0.269
77	77	0.738
78	78	0.975
79	79	0.0481
8	8	0.412
80	80	0.491
81	81	0.045
82	82	0.178
83	83	0.656
84	84	0.374
85	85	0.0017
86	86	0.291
87	87	0.139
88	88	0.502
89	89	0.548
9	9	0.175
90	90	0.663
91	91	0.0187
92	92	0.785
93	93	0.295
94	94	0.107
95	95	0.362
96	96	0.236
97	97	0.665
98	98	0.517
99	99	0.249

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10751

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102411 giant cell carcinoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0102411 (giant cell carcinoma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007790
+|DRA_sample_Accession=CAGE@SAMD00005274
-|accession_numbers=CAGE;DRX007895;DRR008767;DRZ000192;DRZ001577
+|accession_numbers=CAGE;DRX007895;DRR008767;DRZ000192;DRZ001577;DRZ011542;DRZ012927
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr4:81118647..81118666,+!p1@PRDM8!1.82!85.36!PRDM8;;chr11:65667884..65667895,-!p2@FOSL1!1.51!116.30!FOSL1;;chr1:158985493..158985535,+!p4@IFI16!1.44!40.01!IFI16;;chr12:66218255..66218304,+!p3@HMGA2!1.42!67.10!HMGA2;;chr7:14028488..14028516,-!p2@ETV1!1.39!26.22!ETV1;;chr6:28321971..28321995,-!p1@ZNF323!1.36!22.12!ZNF323;;chr6:28321909..28321965,-!p3@ZNF323!1.35!21.50!ZNF323;;chr11:65667846..65667868,-!p1@FOSL1!1.32!503.10!FOSL1;;chr17:46682321..46682362,-!p1@HOXB6!1.32!19.88!HOXB6;;chr17:46703687..46703740,-!p1@HOXB9!1.30!18.76!HOXB9;;chr2:73520667..73520683,-!p1@EGR4!1.29!18.64!EGR4;;chr5:137801160..137801176,+!p1@EGR1!1.27!1679.02!EGR1;;chr14:38064429..38064486,-!p1@FOXA1!1.27!17.77!FOXA1;;chr7:27153454..27153469,-!p2@HOXA3!1.27!17.64!HOXA3;;chr17:35294075..35294102,+!p1@ENST00000559335!1.22!15.78!LHX1;;chr11:65668011..65668020,-!p3@FOSL1!1.21!15.16!FOSL1;;chr2:176969228..176969260,+!p1@HOXD11!1.19!14.41!HOXD11;;chr19:50432453..50432468,+!p1@ATF5!1.17!760.30!ATF5;;chr12:52445218..52445237,+!p1@NR4A1!1.16!167.37!NR4A1;;chr1:158985469..158985489,+!p7@IFI16!1.15!15.78!IFI16;;chr12:66218183..66218209,+!p4@HMGA2!1.14!24.73!HMGA2;;chr6:34204672..34204692,+!p1@HMGA1!1.12!1367.52!HMGA1;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.11!11.93!SMARCE1;;chr5:137804484..137804498,+!p2@EGR1!1.10!46.47!EGR1;;chr14:61116183..61116208,-!p1@SIX1!1.08!41.75!SIX1;;chr12:124873357..124873401,-!p1@NCOR2!1.07!125.87!NCOR2;;chr6:45390025..45390076,+!p2@RUNX2!1.07!25.97!RUNX2;;chr12:66218212..66218244,+!p5@HMGA2!1.07!15.78!HMGA2;;chr11:31832658..31832681,-!p1@PAX6!1.07!10.81!PAX6;;chr7:14029283..14029311,-!p1@ETV1!1.06!55.91!ETV1;;chr8:60031619..60031676,-!p1@TOX!1.06!22.61!TOX;;chr2:200322654..200322707,-!p2@SATB2!1.04!14.66!SATB2;;chr5:72744594..72744609,-!p1@FOXD1!1.03!45.23!FOXD1;;chr17:41622765..41622821,-!p2@ETV4!1.03!15.03!ETV4;;chr9:1050331..1050363,+!p1@DMRT2!1.03!9.69!DMRT2;;chr7:44143925..44143970,+!p1@AEBP1!1.02!213.84!AEBP1;;chr15:67418047..67418093,+!p4@SMAD3!1.02!11.93!SMAD3;;chr6:85473156..85473210,-!p2@TBX18!1.01!11.43!TBX18;;chr3:157823517..157823562,-!p1@SHOX2!0.99!9.32!SHOX2;;chr6:34204921..34204939,+!p3@HMGA1!0.98!262.05!HMGA1;;chr2:101436564..101436647,+!p1@NPAS2!0.96!168.73!NPAS2;;chr5:134369905..134369972,-!p1@PITX1!0.96!12.55!PITX1;;chr8:60031682..60031710,-!p2@TOX!0.95!12.92!TOX;;chr7:27190547..27190591,-!p1@HOXA6!0.95!7.83!HOXA6;;chr1:59249688..59249703,-!p3@JUN!0.94!48.21!JUN;;chr17:46675558..46675577,-!p2@HOXB6!0.94!7.70!HOXB6;;chr20:50721803..50721857,-!p2@ZFP64!0.92!11.80!ZFP64;;chr15:67357924..67357952,+!p2@SMAD3!0.91!49.95!SMAD3;;chr17:46688334..46688385,-!p1@HOXB7!0.91!10.44!HOXB7;;chr14:37131058..37131139,+!p1@PAX9!0.91!7.21!PAX9;;chr14:21994337..21994442,-!p1@SALL2!0.90!19.88!SALL2;;chr2:172967621..172967637,-!p1@DLX2!0.89!19.01!DLX2;;chr6:45390300..45390335,+!p4@RUNX2!0.88!10.56!RUNX2;;chr7:6655225..6655279,+!p1@ENST00000457543!0.88!10.19!ZNF853;;chr15:67391010..67391046,+!p13@SMAD3!0.88!6.59!SMAD3;;chr12:66218598..66218645,+!p2@HMGA2!0.87!31.19!HMGA2;;chr9:102584159..102584174,+!p2@NR4A3!0.87!12.05!NR4A3;;chr7:14026022..14026044,-!p7@ETV1!0.87!6.34!ETV1;;chr11:65687362..65687436,+!p3@DRAP1!0.86!30.44!DRAP1;;chr2:176969179..176969226,+!p2@HOXD11!0.86!6.21!HOXD11;;chr20:42543441..42543497,+!p1@TOX2!0.85!28.70!TOX2;;chr21:30671690..30671762,+!p2@BACH1!0.85!21.87!BACH1;;chr11:65686802..65686818,+!p6@DRAP1!0.85!11.06!DRAP1;;chr7:14029312..14029325,-!p4@ETV1!0.84!7.46!ETV1;;chr10:64576105..64576133,-!p1@EGR2!0.83!12.43!EGR2;;chr12:54402745..54402788,+!p1@HOXC8!0.81!5.47!HOXC8;;chr5:137800912..137800941,+!p7@EGR1!0.81!5.47!EGR1;;chr7:26191809..26191890,+!p1@NFE2L3!0.80!28.21!NFE2L3;;chr11:65686732..65686756,+!p2@DRAP1!0.80!23.98!DRAP1;;chr12:66218378..66218401,+!p6@HMGA2!0.80!8.45!HMGA2;;chr1:158985457..158985468,+!p12@IFI16!0.80!5.34!IFI16;;chr1:59249645..59249656,-!p4@JUN!0.79!13.79!JUN;;chr2:200323414..200323455,-!p1@SATB2!0.79!11.68!SATB2;;chr6:45390002..45390023,+!p6@RUNX2!0.79!9.32!RUNX2;;chr15:67418119..67418162,+!p5@SMAD3!0.79!5.84!SMAD3;;chr1:59249707..59249727,-!p1@JUN!0.78!230.12!JUN;;chr3:128206762..128206781,-!p2@GATA2!0.78!33.92!GATA2;;chr17:41622925..41622976,-!p3@ETV4!0.78!7.83!ETV4;;chr7:14028743..14028799,-!p3@ETV1!0.78!6.46!ETV1;;chr3:138665969..138665993,-!p2@FOXL2!0.78!5.09!FOXL2;;chr6:45389835..45389861,+!p7@RUNX2!0.77!8.20!RUNX2;;chr6:45390077..45390105,+!p9@RUNX2!0.77!6.46!RUNX2;;chr20:55204351..55204377,+!p1@TFAP2C!0.77!6.34!TFAP2C;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.77!4.85!HOXC5;;chr12:66218836..66218888,+!p1@HMGA2!0.76!48.83!HMGA2;;chr6:45390269..45390298,+!p5@RUNX2!0.76!8.32!RUNX2;;chr9:132427972..132428056,+!p1@PRRX2!0.76!6.34!PRRX2;;chr12:66218152..66218174,+!p10@HMGA2!0.76!5.22!HMGA2;;chr17:41623009..41623053,-!p4@ETV4!0.75!7.83!ETV4;;chr10:31288398..31288455,-!p2@ZNF438!0.75!5.47!ZNF438;;chr2:71127699..71127744,+!p1@VAX2!0.74!9.82!VAX2;;chr3:44626446..44626477,+!p1@ZNF660!0.74!8.45!ZNF660;;chr3:138665937..1386659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@@ Line 40: / Line 40: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/giant%2520cell%2520carcinoma%2520cell%2520line%253aLu99B.CNhs10751.10433-106E1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/giant%2520cell%2520carcinoma%2520cell%2520line%253aLu99B.CNhs10751.10433-106E1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/giant%2520cell%2520carcinoma%2520cell%2520line%253aLu99B.CNhs10751.10433-106E1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/giant%2520cell%2520carcinoma%2520cell%2520line%253aLu99B.CNhs10751.10433-106E1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/giant%2520cell%2520carcinoma%2520cell%2520line%253aLu99B.CNhs10751.10433-106E1.hg38.nobarcode.ctss.bed.gz
 |id=FF:10433-106E1
 |is_a=EFO:0002091;;FF:0000210;;FF:0102411
 |is_obsolete=
 |library_id=CNhs10751
-|library_id_phase_based=1:CNhs10751
+|library_id_phase_based=2:CNhs10751
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10433
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10433
 |name=giant cell carcinoma cell line:Lu99B
 |namespace=FANTOM5
@@ Line 50: / Line 59: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10751,LSID692,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 64: / Line 74: @@
 |rna_rin=
 |rna_sample_type=total RNA
-|rna_tube_id=106E1
+|rna_tube_id=1.06E+03
 |rna_weight_ug=50.042
 |sample_age=63
@@ Line 89: / Line 99: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10433-106E1;search_select_hide=table117:FF:10433-106E1
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FF:10433-106E1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:01, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0