FF:10441-106E9: Difference between revisions

Latest revision as of 14:02, 3 June 2020

Name:	synovial sarcoma cell line:HS-SY-II
Species:	Human (Homo sapiens)
Library ID:	CNhs11244
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	synovium
dev stage	NA
sex	unknown
age	NA
cell type	unclassifiable
cell line	HS-SY-II
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005318

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11244		CAGE		DRX008018		DRR008890

Accession ID Hg19

Library id		BAM		CTSS
CNhs11244		DRZ000315		DRZ001700

Accession ID Hg38

Library id		BAM		CTSS
CNhs11244		DRZ011665		DRZ013050

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

HumanCAGEScan Download raw sequence, BAM & CTSS

Library id		3prime-FASTQ		5prime-FASTQ		BAM		CTSS
NCig10066		download		download		download		download
NCig10130		download		download		download		download

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.207
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.601
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0636
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.168
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0563
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.38
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.0636
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.12
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.121
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.501
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.00966
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.504
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0696
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11244

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.11433e-5
MA0003.1	MA0003.1	0.0719
MA0004.1	MA0004.1	0.308
MA0006.1	MA0006.1	0.296
MA0007.1	MA0007.1	0.236
MA0009.1	MA0009.1	0.815
MA0014.1	MA0014.1	0.745
MA0017.1	MA0017.1	0.00425
MA0018.2	MA0018.2	0.229
MA0019.1	MA0019.1	0.627
MA0024.1	MA0024.1	4.8641e-4
MA0025.1	MA0025.1	0.355
MA0027.1	MA0027.1	0.681
MA0028.1	MA0028.1	0.204
MA0029.1	MA0029.1	0.632
MA0030.1	MA0030.1	0.335
MA0031.1	MA0031.1	0.662
MA0035.2	MA0035.2	0.641
MA0038.1	MA0038.1	0.00298
MA0039.2	MA0039.2	0.297
MA0040.1	MA0040.1	0.414
MA0041.1	MA0041.1	0.197
MA0042.1	MA0042.1	0.4
MA0043.1	MA0043.1	0.95
MA0046.1	MA0046.1	0.376
MA0047.2	MA0047.2	0.199
MA0048.1	MA0048.1	0.183
MA0050.1	MA0050.1	1.11938e-6
MA0051.1	MA0051.1	0.0019
MA0052.1	MA0052.1	5.47995e-4
MA0055.1	MA0055.1	0.0615
MA0057.1	MA0057.1	0.0421
MA0058.1	MA0058.1	0.273
MA0059.1	MA0059.1	0.749
MA0060.1	MA0060.1	8.21668e-12
MA0061.1	MA0061.1	0.0112
MA0062.2	MA0062.2	0.491
MA0065.2	MA0065.2	0.00167
MA0066.1	MA0066.1	0.0915
MA0067.1	MA0067.1	0.909
MA0068.1	MA0068.1	0.00102
MA0069.1	MA0069.1	0.888
MA0070.1	MA0070.1	0.506
MA0071.1	MA0071.1	0.578
MA0072.1	MA0072.1	0.559
MA0073.1	MA0073.1	0.537
MA0074.1	MA0074.1	0.456
MA0076.1	MA0076.1	0.112
MA0077.1	MA0077.1	0.544
MA0078.1	MA0078.1	0.671
MA0079.2	MA0079.2	0.142
MA0080.2	MA0080.2	7.65858e-13
MA0081.1	MA0081.1	0.124
MA0083.1	MA0083.1	0.36
MA0084.1	MA0084.1	0.795
MA0087.1	MA0087.1	0.895
MA0088.1	MA0088.1	0.919
MA0090.1	MA0090.1	0.664
MA0091.1	MA0091.1	0.201
MA0092.1	MA0092.1	0.222
MA0093.1	MA0093.1	0.242
MA0099.2	MA0099.2	8.46623e-20
MA0100.1	MA0100.1	0.31
MA0101.1	MA0101.1	0.0813
MA0102.2	MA0102.2	0.00777
MA0103.1	MA0103.1	0.08
MA0104.2	MA0104.2	0.159
MA0105.1	MA0105.1	0.0173
MA0106.1	MA0106.1	0.553
MA0107.1	MA0107.1	0.0246
MA0108.2	MA0108.2	0.102
MA0111.1	MA0111.1	0.867
MA0112.2	MA0112.2	7.39488e-5
MA0113.1	MA0113.1	0.142
MA0114.1	MA0114.1	0.039
MA0115.1	MA0115.1	0.617
MA0116.1	MA0116.1	0.0192
MA0117.1	MA0117.1	0.591
MA0119.1	MA0119.1	0.165
MA0122.1	MA0122.1	0.35
MA0124.1	MA0124.1	0.259
MA0125.1	MA0125.1	0.0517
MA0131.1	MA0131.1	0.179
MA0135.1	MA0135.1	0.298
MA0136.1	MA0136.1	3.66449e-9
MA0137.2	MA0137.2	0.00846
MA0138.2	MA0138.2	0.0427
MA0139.1	MA0139.1	0.114
MA0140.1	MA0140.1	0.398
MA0141.1	MA0141.1	0.108
MA0142.1	MA0142.1	0.59
MA0143.1	MA0143.1	0.664
MA0144.1	MA0144.1	0.00842
MA0145.1	MA0145.1	0.0366
MA0146.1	MA0146.1	0.0827
MA0147.1	MA0147.1	0.255
MA0148.1	MA0148.1	0.236
MA0149.1	MA0149.1	0.0276
MA0150.1	MA0150.1	7.66672e-5
MA0152.1	MA0152.1	0.365
MA0153.1	MA0153.1	0.214
MA0154.1	MA0154.1	0.0243
MA0155.1	MA0155.1	0.373
MA0156.1	MA0156.1	3.85732e-4
MA0157.1	MA0157.1	0.565
MA0159.1	MA0159.1	0.00395
MA0160.1	MA0160.1	0.0605
MA0162.1	MA0162.1	0.22
MA0163.1	MA0163.1	0.00429
MA0164.1	MA0164.1	0.823
MA0258.1	MA0258.1	0.00895
MA0259.1	MA0259.1	0.199

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11244

Novel motif	Logo	P-value
1	1	0.2
10	10	0.283
100	100	0.384
101	101	0.701
102	102	0.933
103	103	0.0385
104	104	0.582
105	105	0.429
106	106	0.00474
107	107	0.0878
108	108	0.356
109	109	0.0641
11	11	0.0713
110	110	0.381
111	111	0.576
112	112	0.0498
113	113	0.727
114	114	0.0267
115	115	0.731
116	116	0.912
117	117	0.348
118	118	0.308
119	119	0.122
12	12	0.474
120	120	0.7
121	121	0.666
122	122	0.364
123	123	0.85
124	124	0.835
125	125	0.625
126	126	0.795
127	127	0.0826
128	128	0.0419
129	129	0.31
13	13	0.748
130	130	0.0255
131	131	0.0739
132	132	0.591
133	133	0.649
134	134	0.924
135	135	0.137
136	136	0.976
137	137	0.0778
138	138	0.117
139	139	0.025
14	14	0.242
140	140	0.313
141	141	0.31
142	142	0.986
143	143	0.00548
144	144	0.902
145	145	0.824
146	146	0.278
147	147	0.502
148	148	0.00531
149	149	0.0991
15	15	0.181
150	150	0.702
151	151	0.218
152	152	0.0814
153	153	0.515
154	154	0.994
155	155	0.985
156	156	0.178
157	157	0.936
158	158	0.901
159	159	0.161
16	16	0.206
160	160	0.478
161	161	0.467
162	162	0.665
163	163	0.129
164	164	0.27
165	165	0.504
166	166	0.498
167	167	0.713
168	168	0.0217
169	169	0.0106
17	17	0.212
18	18	0.142
19	19	0.155
2	2	0.106
20	20	0.393
21	21	0.512
22	22	0.103
23	23	0.0379
24	24	0.8
25	25	0.425
26	26	0.437
27	27	0.0935
28	28	0.66
29	29	0.638
3	3	0.285
30	30	0.491
31	31	0.422
32	32	0.0326
33	33	0.385
34	34	0.443
35	35	0.554
36	36	0.181
37	37	0.0628
38	38	0.373
39	39	0.624
4	4	0.655
40	40	0.181
41	41	0.078
42	42	0.827
43	43	0.154
44	44	0.272
45	45	0.308
46	46	0.187
47	47	0.473
48	48	0.323
49	49	0.284
5	5	0.264
50	50	0.723
51	51	0.471
52	52	0.186
53	53	0.51
54	54	0.462
55	55	0.0493
56	56	0.407
57	57	0.756
58	58	0.285
59	59	0.0282
6	6	0.572
60	60	0.0353
61	61	0.415
62	62	0.105
63	63	0.284
64	64	0.295
65	65	0.0934
66	66	0.203
67	67	0.971
68	68	0.133
69	69	0.417
7	7	0.511
70	70	9.67851e-4
71	71	0.21
72	72	0.238
73	73	0.091
74	74	0.124
75	75	0.151
76	76	0.818
77	77	0.223
78	78	0.802
79	79	0.245
8	8	0.31
80	80	0.0344
81	81	0.538
82	82	0.0108
83	83	0.288
84	84	0.874
85	85	0.00579
86	86	0.261
87	87	0.156
88	88	0.696
89	89	0.0227
9	9	0.182
90	90	0.415
91	91	0.444
92	92	0.0276
93	93	0.324
94	94	0.182
95	95	0.36
96	96	0.132
97	97	0.792
98	98	0.179
99	99	0.704

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11244

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
CL:0000214 synovial cell
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100400 sarcoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000499 (stromal cell)
0000153 (GAG secreting cell)
0000327 (extracellular matrix secreting cell)
0000447 (carbohydrate secreting cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000214 (synovial cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1115 (sarcoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0004457 (cavity lining)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0006914 (squamous epithelium)
0004905 (articulation)
0000486 (multilaminar epithelium)
0006915 (stratified squamous epithelium)
0007616 (layer of synovial tissue)
0000042 (serous membrane)
0000982 (skeletal joint)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002217 (synovial joint)
0002018 (synovial membrane of synovial joint)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0004770 (articular system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100400 (sarcoma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007911
+|DRA_sample_Accession=CAGE@SAMD00005318
-|accession_numbers=CAGE;DRX008018;DRR008890;DRZ000315;DRZ001700
+|HumanCAGEScanFiles=NCig10066;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II%252c%2520tech_rep1.NCig10066.10441-106E9.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II%252c%2520tech_rep1.NCig10066.10441-106E9.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II%252c%2520tech_rep1.NCig10066.10441-106E9.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II%252c%2520tech_rep1.NCig10066.10441-106E9.hg19.GCTATA.pairs.bed.gz!NCig10130;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II%252c%2520tech_rep2.NCig10130.10441-106E9.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II%252c%2520tech_rep2.NCig10130.10441-106E9.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II%252c%2520tech_rep2.NCig10130.10441-106E9.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II%252c%2520tech_rep2.NCig10130.10441-106E9.hg19.GCTATA.pairs.bed.gz
+|accession_numbers=CAGE;DRX008018;DRR008890;DRZ000315;DRZ001700;DRZ011665;DRZ013050
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0004457,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0006914,UBERON:0004905,UBERON:0000486,UBERON:0006915,UBERON:0007616,UBERON:0000042,UBERON:0000982,UBERON:0004458,UBERON:0010317,UBERON:0002217,UBERON:0002018,UBERON:0002204,UBERON:0001434,UBERON:0004770
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000499,CL:0000153,CL:0000327,CL:0000447,CL:0000215,CL:0000255,CL:0000214
@@ Line 9: / Line 10: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr12:54379029..54379057,+!p2@HOXC10!2.36!228.77!HOXC10;;chr14:29234581..29234601,+!p2@FOXG1!2.18!151.15!FOXG1;;chr7:19157248..19157268,-!p1@TWIST1!2.12!348.20!TWIST1;;chr2:223163706..223163730,-!p1@PAX3!2.00!99.87!PAX3;;chr16:86544113..86544145,+!p1@FOXF1!1.99!119.43!FOXF1;;chr12:54393880..54393962,+!p1@HOXC9!1.95!87.41!HOXC9;;chr5:2751762..2751784,-!p1@IRX2!1.89!76.68!IRX2;;chr12:54348655..54348693,+!p1@HOXC12!1.86!71.15!HOXC12;;chr15:57511609..57511651,+!p2@TCF12!1.85!113.91!TCF12;;chrX:85403445..85403479,+!p2@DACH2!1.84!68.63!DACH2;;chr13:72441074..72441172,-!p2@DACH1!1.83!67.37!DACH1;;chr13:72441315..72441454,-!p1@DACH1!1.74!104.13!DACH1;;chr3:147127177..147127194,+!p2@ZIC1!1.74!53.64!ZIC1;;chr12:54348702..54348715,+!p2@HOXC12!1.69!47.49!HOXC12;;chr3:147127142..147127168,+!p1@ZIC1!1.68!47.33!ZIC1;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.67!45.91!EN2;;chr5:174151612..174151633,+!p2@MSX2!1.64!42.28!MSX2;;chr6:1312325..1312340,+!p1@FOXQ1!1.62!65.00!FOXQ1;;chr5:174151553..174151610,+!p1@MSX2!1.61!65.16!MSX2;;chr17:46682321..46682362,-!p1@HOXB6!1.59!38.34!HOXB6;;chr13:100634031..100634045,+!p1@ZIC2!1.59!38.18!ZIC2;;chr14:29235961..29236008,+!p1@FOXG1!1.57!36.29!FOXG1;;chr10:131762504..131762555,-!p1@EBF3!1.56!35.50!EBF3;;chr12:54384370..54384382,+!p5@HOXC6!1.52!31.87!HOXC6;;chr8:106330656..106330684,+!p1@ZFPM2!1.51!80.94!ZFPM2;;chr2:172967621..172967637,-!p1@DLX2!1.48!76.36!DLX2;;chr6:1389789..1389821,+!p1@FOXF2!1.47!38.81!FOXF2;;chr9:126774018..126774055,+!p1@LHX2!1.47!28.24!LHX2;;chr2:237077022..237077038,-!p1@GBX2!1.46!28.08!GBX2;;chr15:42749722..42749739,-!p2@ZFP106!1.44!47.17!ZFP106;;chr5:2751785..2751808,-!p2@IRX2!1.43!25.72!IRX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.42!25.40!HOXC5;;chr15:68115672..68115691,+!p1@SKOR1!1.42!25.09!SKOR1;;chrX:84498989..84499003,+!p1@ZNF711!1.38!31.40!ZNF711;;chr4:4861385..4861398,+!p1@MSX1!1.37!65.00!MSX1;;chr2:172949484..172949522,+!p1@DLX1!1.36!22.09!DLX1;;chr6:10412600..10412637,-!p1@TFAP2A!1.35!35.34!TFAP2A;;chr2:176964515..176964540,+!p1@HOXD12!1.35!21.61!HOXD12;;chr14:61116183..61116208,-!p1@SIX1!1.34!77.47!SIX1;;chr2:60780753..60780800,-!p1@BCL11A!1.33!97.98!BCL11A;;chr6:10415276..10415341,-!p2@TFAP2A!1.33!25.09!TFAP2A;;chr6:19837592..19837621,+!p1@ID4!1.32!118.80!ID4;;chr19:47523058..47523114,+!p1@NPAS1!1.32!19.72!NPAS1;;chr7:156803329..156803362,-!p1@MNX1!1.30!18.93!MNX1;;chr9:96717629..96717644,-!p1@BARX1!1.29!18.62!BARX1;;chr2:175199697..175199706,+!p2@SP9!1.28!17.99!SP9;;chr18:72922743..72922761,+!p3@TSHZ1!1.27!56.48!TSHZ1;;chr17:46667594..46667619,-!p1@HOXB3!1.27!17.51!HOXB3;;chr17:41622765..41622821,-!p2@ETV4!1.26!25.87!ETV4;;chr12:66218598..66218645,+!p2@HMGA2!1.25!76.05!HMGA2;;chr8:106330696..106330719,+!p2@ZFPM2!1.25!21.46!ZFPM2;;chr12:54366894..54366922,+!p2@HOXC11!1.25!16.88!HOXC11;;chr8:77593474..77593612,+!p1@ZFHX4!1.24!67.84!ZFHX4;;chr9:1050331..1050363,+!p1@DMRT2!1.24!16.57!DMRT2;;chr13:100623375..100623425,-!p1@ZIC5!1.24!16.41!ZIC5;;chr13:100634130..100634143,+!p3@ZIC2!1.24!16.41!ZIC2;;chr12:66218183..66218209,+!p4@HMGA2!1.23!30.77!HMGA2;;chr2:185463247..185463263,+!p1@ZNF804A!1.23!28.40!ZNF804A;;chr1:221052994..221053008,+!p6@HLX!1.23!18.77!HLX;;chr6:10412392..10412409,-!p4@TFAP2A!1.23!18.14!TFAP2A;;chr3:147123837..147123848,-!p7@ZIC4!1.23!16.09!ZIC4;;chr9:132427883..132427951,+!p2@PRRX2!1.23!16.09!PRRX2;;chr11:129245526..129245553,+!p1@BARX2!1.21!15.30!BARX2;;chr12:66218255..66218304,+!p3@HMGA2!1.20!39.60!HMGA2;;chr15:57511589..57511608,+!p4@TCF12!1.20!14.83!TCF12;;chr3:147127489..147127503,+!p11@ZIC1!1.20!14.67!ZIC1;;chr8:144512897..144512903,-!p1@MAFA!1.20!14.67!MAFA;;chr12:54366975..54367001,+!p1@HOXC11!1.19!14.36!HOXC11;;chr9:126773880..126773895,+!p2@LHX2!1.19!14.36!LHX2;;chr12:54332652..54332671,+!p2@HOXC13!1.18!14.20!HOXC13;;chr14:29236269..29236285,+!p3@FOXG1!1.18!14.20!FOXG1;;chr12:66218378..66218401,+!p6@HMGA2!1.17!21.30!HMGA2;;chr12:54378923..54378966,+!p1@HOXC10!1.17!13.88!HOXC10;;chr5:153857778..153857794,-!p1@HAND1!1.17!13.88!HAND1;;chr4:8873545..8873583,-!p1@HMX1!1.17!13.73!HMX1;;chr2:60780607..60780624,-!p2@BCL11A!1.16!40.86!BCL11A;;chr2:172967242..172967265,-!p2@DLX2!1.15!13.10!DLX2;;chr8:60031682..60031710,-!p2@TOX!1.14!20.83!TOX;;chr12:66218212..66218244,+!p5@HMGA2!1.14!18.46!HMGA2;;chr12:54366949..54366973,+!p3@HOXC11!1.14!12.94!HOXC11;;chr7:27192185..27192209,-!p1@HOXA3!1.14!12.78!HOXA3;;chr20:61051039..61051057,-!p1@GATA5!1.13!12.62!GATA5;;chr12:66218836..66218888,+!p1@HMGA2!1.12!114.70!HMGA2;;chr12:54332608..54332636,+!p1@HOXC13!1.12!12.31!HOXC13;;chr12:54379066..54379073,+!p11@HOXC10!1.12!12.15!HOXC10;;chr13:100634004..100634025,+!p2@ZIC2!1.12!12.15!ZIC2;;chr16:1031762..1031781,+!p1@SOX8!1.12!12.15!SOX8;;chrX:84499081..84499115,+!p2@ZNF711!1.11!17.67!ZNF711;;chr13:100638100..100638115,+!p4@ZIC2!1.11!11.99!ZIC2;;chr1:214161272..214161322,+!p1@PROX1!1.10!16.57!PROX1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.10!12.31!GLIS1;;chr4:109089901..1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@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II.CNhs11244.10441-106E9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II.CNhs11244.10441-106E9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II.CNhs11244.10441-106E9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II.CNhs11244.10441-106E9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II.CNhs11244.10441-106E9.hg38.nobarcode.ctss.bed.gz
 |id=FF:10441-106E9
 |is_a=CL:0000214;;EFO:0002091;;FF:0000210;;FF:0100400
 |is_obsolete=
 |library_id=CNhs11244
-|library_id_phase_based=1:CNhs11244
+|library_id_phase_based=2:CNhs11244
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10441
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10441
 |name=synovial sarcoma cell line:HS-SY-II
 |namespace=FANTOM5
@@ Line 51: / Line 61: @@
 |profile_cagescan=NCig10066,,,
 |profile_hcage=CNhs11244,LSID757,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 65: / Line 76: @@
 |rna_rin=9.5
 |rna_sample_type=total RNA
-|rna_tube_id=106E9
+|rna_tube_id=1.06E+11
 |rna_weight_ug=20.71675
 |sample_age=
@@ Line 90: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10441-106E9;search_select_hide=table117:FF:10441-106E9
 }}

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FF:10441-106E9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:02, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0