FF:10443-106F2: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005131 | |||
|accession_numbers=CAGE;DRX007881;DRR008753;DRZ000178;DRZ001563;DRZ011528;DRZ012913 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:3350,DOID:6193 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
| | |||
|fonse_cell_line=FF:10443-106F2 | |fonse_cell_line=FF:10443-106F2 | ||
|fonse_cell_line_closure=FF:10443-106F2 | |fonse_cell_line_closure=FF:10443-106F2 | ||
| Line 35: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/epithelioid%2520sarcoma%2520cell%2520line%253aHS-ES-1.CNhs11247.10443-106F2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/epithelioid%2520sarcoma%2520cell%2520line%253aHS-ES-1.CNhs11247.10443-106F2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/epithelioid%2520sarcoma%2520cell%2520line%253aHS-ES-1.CNhs11247.10443-106F2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/epithelioid%2520sarcoma%2520cell%2520line%253aHS-ES-1.CNhs11247.10443-106F2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/epithelioid%2520sarcoma%2520cell%2520line%253aHS-ES-1.CNhs11247.10443-106F2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10443-106F2 | |id=FF:10443-106F2 | ||
|is_a=DOID:6193;;EFO:0002091;;FF:0000003;;FF:0000210 | |is_a=DOID:6193;;EFO:0002091;;FF:0000003;;FF:0000210 | ||
|is_obsolete= | |||
|library_id=CNhs11247 | |||
|library_id_phase_based=2:CNhs11247 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10443 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10443 | |||
|name=epithelioid sarcoma cell line:HS-ES-1 | |name=epithelioid sarcoma cell line:HS-ES-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11247,LSID757,release008,COMPLETED | |profile_hcage=CNhs11247,LSID757,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0203691670453926,0,-0.27483329820609,-0.247942342644033,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0740350572471498,0,0.254992071600053,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,1.30669164833194,0,0.00410127544868754,0,0.0689224358658181,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.343192323807067,0,0,0.0689224358658181,-0.0969923612426051,0,0,-0.0284211913472788,0,0,0,0,0,0,0,0,0.0689224358658181,0,0,0,0,0.0689224358658181,0,0,0,0,0.0344612179329091,0,0,0,0,0,0,0,0,0,-0.0584468268118252,0.290307065868813,0.0344612179329091,0,0.0344612179329091,0,0.308142645607987,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.0689224358658181,0,0,-0.0476964575857156,-0.0881493139725753,0.12839024180777,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.574236961045341,0.308142645607987,0,0,0.0689224358658181,0.0689224358658181,0,0,0,0,0,0,0,-0.178256439419746,0,-0.0395396168364002,-0.0745927066576538,0,0,-0.239366081150861,0,0.343192323807067,0,0.0177941485695162,0.30790579176465,0,0.12839024180777,0.12839024180777,0,-0.128119866952565,0,-0.0504125515893149,0.0344612179329091,0,0,0,-0.0186252810838506,0.180792772151883,0,0.149419761269652,0.464130405204049,0,0.0689224358658181,0,0,-0.0662180369706463,0,0.106478583801837,0.26047215548365,0.473491557261908,0.785192224070462,-0.04680465889238,0,0,0,-0.580055985947642,-0.354517236297015,0,0,0.6172553710488,0.073642453039394,0,0,-0.391044581551635,0,0.262590819793928,0.0288449924724217,0,0.165269879784421,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,0.0488374148384499,0.0569643532624304,0,0.0689224358658181,0,0.0981446687842092,0,0.0064866797067637,-0.373286155956567,0.0741224948108674,0.0903435985658895,-0.46301996532931,0,-0.302389727009913,-0.103870342996812,-0.271766640555589,-0.064922622295552,-0.147401849371139,-0.189981719549847,0.123124660056615,-0.0096336433529427,0.155207570026287,-0.026626603634947,-0.0295676934422446,0,-0.0190409117371999,0.09214211366454,0,0,0,0.193101951997422,0,-0.0596686491699578,-0.146922390669706,0.092006654219352,0.122661003291657,-0.00352945569790047,-0.133461400749021,0.076611875270562,0.303659795350396,-0.114244129089527,0.0118520604348164,0.518183415471172,0.0575295107072233,0,-0.087969206950705,-0.131071901142847,-0.605224909975544,-0.129561170128389,0,-0.0228022464934912,-0.0683442610773682,0.064195120903885,-0.433500605609827,0.0894643221224556,0,0,0.308133781915387,0.0689224358658181,0,0,0,0,-0.00249678323463942,-0.196299819223099,-0.00549749395996735,0,-0.00422661437173677,0,-0.09419708192974,0,0.0331656276264856,0.3078133815893,0.077437714736882,-0.232145121540629,0,-0.217214876185627,-0.186677725748008,-0.0960682604731847,0.272708339972977,-0.0584468268118252,0.00764533151402869,-0.154523042137224,-0.0348922249415222,-0.158742459186095,0,-0.0881268324752877,0,0.220089672300229,-0.679498131621524,-0.0104259364526751,-0.207750911612731,0,0.101140541999873,0,0.048185509117733,0,-0.0444324975504559,-0.54043375147324,-0.0634633630632674,0.214405488790765,0,0.0122296357315043,1.04922069993404,0.0689224358658181,0.225763173423476,-0.0050713105237615,0.343192323807067,0.192825240472428,-0.211430963462293,0.0241408549428291,0.149711757905655,0,-0.196377440382237,0,0,-0.127610849899872,0.107716286042679,0.0689224358658181,0.125174411171666,0.247616399610164,0.220270300954015,-0.115971073434934,0,0,-0.0155029323885928,0,0,0.00640522601492532,0.12839024180777,0.09013630151259,-0.072639144354977,0.153952895882325,0.235643832002278,0,0,0.00315943116660306,0,0.113762659831375,0,0,0.211349309881323,0.393356030209973,0,0,0,0.081663114248787,0,0,0,0,0,0,0.0443741527204214,-0.0428251665410415,-0.0853366928113983,0,0.107818635460281,0,0,0,0,0.180687197131779,0,0,0,0.285443235300609,-0.0739457512331457,0.104340651919157,0.203088998422847,0,0,0,-0.215723402553475,-0.134314126228906,0.227358067595577,0.137633930907418,0,0,0,0,-0.0172185539233932,0,0,0,0,0.0111919788121541,-0.0618531859768042,0,0,0,-0.27695440160179,0,0,0,0.0223332681498422,-0.0268407598004687,0,0.0689224358658181,0.275876655980611,0,-0.347353966610451,0.352964722368767,0,-0.37665215680888,-0.0654044874991557,-0.376772035307733,0,0,-0.0806599346581088,0,7.7502628954479e-05,0.112378742241706,0.0142362967179979,0,0,0,0,0,0,0.227358067595577,0,-0.214314512399756,0.21814801678621,0,0,0,0,0,0,0,0,0,0.180687197131779,0.0857161538751119,-0.0233016207926923,0.612333289832956,0,0.0721973086588608,0,0,0,0,0.130432696390871,0.204072730098935,0,0,0,0,0,0.0689224358658181,0,0,0.140907350169714,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.495884685288066,0,0,-0.0500040645979366,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00507115577232177,-0.336000071260363,0,0.0689224358658181,0,0,0,0,0,-0.27483329820609,0,0,0,0,-0.0449619378431591,0,0,0,0.427678281492261,0,0.0203691670453926,0,0,0,0,0,0.173537230031463,0.0344612179329091,0,0,0,0,0,0,0,0,0,0,0,0.064195120903885,0,0,0.246488926356764,0,0,0,0,0,0.162147231792933,0,0,0,0,0,0,0.17174857439432,0.0689224358658181,0,0,0,0,0,0,0.064195120903885,0,0,0,0,0,0,0,0,0.0344612179329091,0,0.0689224358658181,0,0,0,0,0,0,-0.000396825872179311,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0278376888966414,0,0,0,0,0,0,0.0552154831503575,-0.184564060986353,0.0854474467751661,0,0,0,0.0592934613153335,0.343192323807067,0,0,0.0689224358658181,0.339400609426792,0,0,0,0,0,0,0,0,0.12839024180777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0740350572471498,0,0,0,0,0,0,0,0,0,0,0,0,0.064195120903885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12839024180777,0.12839024180777,0,0,0,0,0,0,-0.0340113632754165,0.12839024180777,0,0,0,0,0,0,0.12839024180777,0,0,0,0,0.134748318702525,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.0846959878492742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 77: | ||
|rna_weight_ug=37.325 | |rna_weight_ug=37.325 | ||
|sample_age= | |sample_age= | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB2364 | |sample_cell_catalog=RCB2364 | ||
|sample_cell_line=HS-ES-1 | |sample_cell_line=HS-ES-1 | ||
| Line 69: | Line 90: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.0861854172402e-259!GO:0043231;intracellular membrane-bound organelle;6.96934004965097e-217!GO:0043227;membrane-bound organelle;1.23608227091157e-216!GO:0043226;organelle;4.03095706796822e-215!GO:0043229;intracellular organelle;1.08916779513215e-214!GO:0005737;cytoplasm;2.00904960436787e-170!GO:0044422;organelle part;1.21559152158492e-140!GO:0044446;intracellular organelle part;1.92584744691985e-139!GO:0044444;cytoplasmic part;1.5666050692811e-121!GO:0005634;nucleus;2.25942792631449e-105!GO:0032991;macromolecular complex;4.88002118563716e-98!GO:0043170;macromolecule metabolic process;4.02299285643717e-96!GO:0044238;primary metabolic process;1.54538734461792e-95!GO:0044237;cellular metabolic process;9.11302661467704e-93!GO:0030529;ribonucleoprotein complex;1.42076827096359e-81!GO:0044428;nuclear part;3.32304063518376e-75!GO:0005515;protein binding;1.62684264252047e-74!GO:0003723;RNA binding;7.37775594939926e-74!GO:0043233;organelle lumen;6.96598982114167e-71!GO:0031974;membrane-enclosed lumen;6.96598982114167e-71!GO:0043283;biopolymer metabolic process;2.65654485819752e-62!GO:0005739;mitochondrion;1.17308331805548e-58!GO:0010467;gene expression;1.25148553346864e-57!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.50404570841383e-57!GO:0016043;cellular component organization and biogenesis;9.12690176084902e-52!GO:0043234;protein complex;1.54899941413977e-50!GO:0006412;translation;2.60150813861365e-49!GO:0005840;ribosome;8.30036663972271e-49!GO:0006396;RNA processing;1.24532755167863e-45!GO:0019538;protein metabolic process;1.97485220564696e-45!GO:0031981;nuclear lumen;2.95521974638908e-45!GO:0031090;organelle membrane;3.12316848616747e-45!GO:0003735;structural constituent of ribosome;1.66009835526839e-42!GO:0015031;protein transport;2.03074775004743e-42!GO:0033036;macromolecule localization;2.90624788032248e-42!GO:0003676;nucleic acid binding;1.01409864960828e-40!GO:0044260;cellular macromolecule metabolic process;4.58059842096901e-40!GO:0044267;cellular protein metabolic process;6.43448758312363e-40!GO:0045184;establishment of protein localization;5.04896953946322e-39!GO:0044429;mitochondrial part;5.41891303889104e-39!GO:0008104;protein localization;1.424295164143e-38!GO:0005829;cytosol;6.42360339068857e-38!GO:0016071;mRNA metabolic process;8.91102292980211e-38!GO:0031967;organelle envelope;1.57232849401014e-37!GO:0033279;ribosomal subunit;2.55583108357153e-37!GO:0009059;macromolecule biosynthetic process;2.74335086054457e-37!GO:0031975;envelope;3.53585128014641e-37!GO:0043228;non-membrane-bound organelle;1.58145766563943e-35!GO:0043232;intracellular non-membrane-bound organelle;1.58145766563943e-35!GO:0046907;intracellular transport;2.53860977382161e-35!GO:0008380;RNA splicing;6.91111480173767e-35!GO:0006259;DNA metabolic process;7.92592497051169e-35!GO:0044249;cellular biosynthetic process;1.38964648220959e-33!GO:0009058;biosynthetic process;1.45453242471671e-33!GO:0006996;organelle organization and biogenesis;8.58946153381972e-33!GO:0065003;macromolecular complex assembly;2.39944546395387e-32!GO:0006397;mRNA processing;2.48507715896673e-32!GO:0016070;RNA metabolic process;8.57431111070185e-31!GO:0006886;intracellular protein transport;1.04060486253477e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.77048381645637e-29!GO:0022607;cellular component assembly;6.90866144998243e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.31969340648825e-27!GO:0005654;nucleoplasm;8.17670057171236e-27!GO:0005740;mitochondrial envelope;1.45295885514272e-25!GO:0007049;cell cycle;1.68893610530386e-25!GO:0005681;spliceosome;1.15528391848665e-24!GO:0019866;organelle inner membrane;2.23698447245079e-24!GO:0031966;mitochondrial membrane;2.98437186208047e-24!GO:0051649;establishment of cellular localization;3.20789499499472e-24!GO:0051641;cellular localization;5.20153018107508e-24!GO:0000166;nucleotide binding;2.82555809725513e-23!GO:0044445;cytosolic part;1.86537552666017e-22!GO:0006974;response to DNA damage stimulus;2.60481583705321e-22!GO:0005743;mitochondrial inner membrane;3.39550948028782e-22!GO:0006119;oxidative phosphorylation;9.30054390251654e-22!GO:0006457;protein folding;1.18150927078847e-21!GO:0044451;nucleoplasm part;2.26612350063601e-21!GO:0017111;nucleoside-triphosphatase activity;6.43711898863302e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.60513749959968e-20!GO:0016462;pyrophosphatase activity;1.79967812681663e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;2.21570445269468e-20!GO:0015935;small ribosomal subunit;6.90827287779577e-20!GO:0005730;nucleolus;1.22459172135259e-19!GO:0022402;cell cycle process;1.67189378435611e-19!GO:0022618;protein-RNA complex assembly;3.46800523991408e-19!GO:0008134;transcription factor binding;4.84831297961597e-19!GO:0043285;biopolymer catabolic process;9.93910615903696e-19!GO:0000278;mitotic cell cycle;1.08273257450409e-18!GO:0044455;mitochondrial membrane part;1.24299880194407e-18!GO:0006512;ubiquitin cycle;1.44726443526792e-18!GO:0044265;cellular macromolecule catabolic process;1.81711579371857e-18!GO:0015934;large ribosomal subunit;1.97992092942717e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;3.01873602180084e-18!GO:0019941;modification-dependent protein catabolic process;5.61533390210778e-18!GO:0043632;modification-dependent macromolecule catabolic process;5.61533390210778e-18!GO:0005694;chromosome;5.87096507038656e-18!GO:0044257;cellular protein catabolic process;6.07798527287209e-18!GO:0016874;ligase activity;6.23663077479795e-18!GO:0012505;endomembrane system;8.89185041537322e-18!GO:0006281;DNA repair;1.00945333297267e-17!GO:0006511;ubiquitin-dependent protein catabolic process;1.17249229911756e-17!GO:0044427;chromosomal part;4.11310222788855e-17!GO:0032553;ribonucleotide binding;1.25577567472889e-16!GO:0032555;purine ribonucleotide binding;1.25577567472889e-16!GO:0005746;mitochondrial respiratory chain;1.65792201949161e-16!GO:0048770;pigment granule;1.65792201949161e-16!GO:0042470;melanosome;1.65792201949161e-16!GO:0051082;unfolded protein binding;2.13162220645228e-16!GO:0000502;proteasome complex (sensu Eukaryota);2.39667665273056e-16!GO:0017076;purine nucleotide binding;2.53167544246618e-16!GO:0009057;macromolecule catabolic process;3.52718942860064e-16!GO:0030163;protein catabolic process;9.62456843657004e-16!GO:0031980;mitochondrial lumen;1.17038964967831e-15!GO:0005759;mitochondrial matrix;1.17038964967831e-15!GO:0050794;regulation of cellular process;1.26503386472227e-15!GO:0008135;translation factor activity, nucleic acid binding;1.50654656662879e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.54978995465921e-15!GO:0051276;chromosome organization and biogenesis;1.58568265771557e-15!GO:0006605;protein targeting;2.15289396965229e-15!GO:0005524;ATP binding;2.23626646592819e-15!GO:0000087;M phase of mitotic cell cycle;3.06921733834228e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.11654803121312e-15!GO:0005783;endoplasmic reticulum;5.68376487345595e-15!GO:0007067;mitosis;6.09555906729867e-15!GO:0009719;response to endogenous stimulus;8.61821175757414e-15!GO:0032559;adenyl ribonucleotide binding;1.05712008286688e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.81563589775829e-14!GO:0003954;NADH dehydrogenase activity;1.81563589775829e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.81563589775829e-14!GO:0051301;cell division;2.87125491655196e-14!GO:0030554;adenyl nucleotide binding;3.35150341804991e-14!GO:0022403;cell cycle phase;3.99464297794848e-14!GO:0005794;Golgi apparatus;4.5451239075296e-14!GO:0044248;cellular catabolic process;7.04376182074736e-14!GO:0006260;DNA replication;9.44579598231136e-14!GO:0016887;ATPase activity;1.61252402006388e-13!GO:0005761;mitochondrial ribosome;3.57171714659337e-13!GO:0000313;organellar ribosome;3.57171714659337e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;3.89484285544687e-13!GO:0000375;RNA splicing, via transesterification reactions;3.89484285544687e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.89484285544687e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.82991173812515e-13!GO:0016192;vesicle-mediated transport;7.23215576124728e-13!GO:0003712;transcription cofactor activity;8.38060467492708e-13!GO:0048193;Golgi vesicle transport;8.46689234568624e-13!GO:0000279;M phase;8.50977894147275e-13!GO:0042775;organelle ATP synthesis coupled electron transport;9.38227939709039e-13!GO:0042773;ATP synthesis coupled electron transport;9.38227939709039e-13!GO:0031965;nuclear membrane;1.10470042860311e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.29290038875631e-12!GO:0045271;respiratory chain complex I;1.29290038875631e-12!GO:0005747;mitochondrial respiratory chain complex I;1.29290038875631e-12!GO:0019222;regulation of metabolic process;1.41199501049072e-12!GO:0042623;ATPase activity, coupled;1.64553694767709e-12!GO:0006413;translational initiation;1.65098387168326e-12!GO:0044432;endoplasmic reticulum part;1.7299298555062e-12!GO:0005635;nuclear envelope;1.84876187927977e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.07311079683582e-12!GO:0043412;biopolymer modification;2.64907287739155e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;2.80218926135361e-12!GO:0003743;translation initiation factor activity;3.0615829362642e-12!GO:0008639;small protein conjugating enzyme activity;3.36941699239598e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.3798475732698e-12!GO:0006915;apoptosis;3.68766130160421e-12!GO:0012501;programmed cell death;3.69803519803345e-12!GO:0044453;nuclear membrane part;3.82376688426103e-12!GO:0006366;transcription from RNA polymerase II promoter;4.23508165430627e-12!GO:0004842;ubiquitin-protein ligase activity;7.19082848087017e-12!GO:0006323;DNA packaging;1.01560687650735e-11!GO:0006913;nucleocytoplasmic transport;1.04192145949702e-11!GO:0051186;cofactor metabolic process;1.42039846901264e-11!GO:0019787;small conjugating protein ligase activity;1.50202555597318e-11!GO:0051169;nuclear transport;1.63145147506618e-11!GO:0004386;helicase activity;2.64722880102241e-11!GO:0008219;cell death;3.26274607410972e-11!GO:0016265;death;3.26274607410972e-11!GO:0042254;ribosome biogenesis and assembly;3.47460203505299e-11!GO:0050789;regulation of biological process;4.57420736280283e-11!GO:0006446;regulation of translational initiation;5.22124676523147e-11!GO:0000074;regulation of progression through cell cycle;5.94275605615561e-11!GO:0051726;regulation of cell cycle;7.65858818873147e-11!GO:0016604;nuclear body;1.02598879614132e-10!GO:0006464;protein modification process;1.2037760504797e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.21969623844613e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.27722302034616e-10!GO:0048523;negative regulation of cellular process;5.73381901695396e-10!GO:0031323;regulation of cellular metabolic process;7.91607411466046e-10!GO:0016881;acid-amino acid ligase activity;9.72915756743226e-10!GO:0005643;nuclear pore;1.49252953406365e-09!GO:0005768;endosome;1.76061221289565e-09!GO:0005793;ER-Golgi intermediate compartment;1.97049983462164e-09!GO:0017038;protein import;2.65976574999879e-09!GO:0000785;chromatin;3.02617158104581e-09!GO:0008026;ATP-dependent helicase activity;3.03837084193431e-09!GO:0043687;post-translational protein modification;6.75914132833446e-09!GO:0042981;regulation of apoptosis;6.75914132833446e-09!GO:0006399;tRNA metabolic process;7.08851418993549e-09!GO:0065004;protein-DNA complex assembly;7.16114874374457e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.80824654240357e-09!GO:0016607;nuclear speck;7.96227291739925e-09!GO:0006350;transcription;8.7113926947191e-09!GO:0065002;intracellular protein transport across a membrane;8.7529339740215e-09!GO:0006461;protein complex assembly;8.78626851779805e-09!GO:0043067;regulation of programmed cell death;8.97853961005268e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.20294596625067e-09!GO:0009259;ribonucleotide metabolic process;9.27407983194356e-09!GO:0006333;chromatin assembly or disassembly;1.04880280262816e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.06595865332545e-08!GO:0015630;microtubule cytoskeleton;1.11624061536437e-08!GO:0006732;coenzyme metabolic process;1.17522099280584e-08!GO:0048519;negative regulation of biological process;1.52525717635308e-08!GO:0006403;RNA localization;1.617942555744e-08!GO:0006163;purine nucleotide metabolic process;1.78992056413456e-08!GO:0015986;ATP synthesis coupled proton transport;2.23136734466039e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.23136734466039e-08!GO:0008565;protein transporter activity;2.3890717738277e-08!GO:0031324;negative regulation of cellular metabolic process;2.55540302329738e-08!GO:0050657;nucleic acid transport;2.62998806784358e-08!GO:0051236;establishment of RNA localization;2.62998806784358e-08!GO:0050658;RNA transport;2.62998806784358e-08!GO:0005789;endoplasmic reticulum membrane;2.68466666062761e-08!GO:0032446;protein modification by small protein conjugation;2.91282340821051e-08!GO:0009055;electron carrier activity;3.08484003486832e-08!GO:0051246;regulation of protein metabolic process;3.99722045868815e-08!GO:0006164;purine nucleotide biosynthetic process;4.34650323490107e-08!GO:0009260;ribonucleotide biosynthetic process;4.46696293785229e-08!GO:0009142;nucleoside triphosphate biosynthetic process;4.65257332219536e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.65257332219536e-08!GO:0009150;purine ribonucleotide metabolic process;5.3374693163628e-08!GO:0009892;negative regulation of metabolic process;5.49543390340792e-08!GO:0009199;ribonucleoside triphosphate metabolic process;6.10405964276866e-08!GO:0016567;protein ubiquitination;6.15518138314386e-08!GO:0016469;proton-transporting two-sector ATPase complex;6.28429624222859e-08!GO:0009141;nucleoside triphosphate metabolic process;7.16863574077799e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.43898172617186e-08!GO:0004812;aminoacyl-tRNA ligase activity;7.43898172617186e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.43898172617186e-08!GO:0019829;cation-transporting ATPase activity;7.52612432171602e-08!GO:0046930;pore complex;8.45042559297828e-08!GO:0043038;amino acid activation;8.63123256908926e-08!GO:0006418;tRNA aminoacylation for protein translation;8.63123256908926e-08!GO:0043039;tRNA aminoacylation;8.63123256908926e-08!GO:0009056;catabolic process;9.05270798286916e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.01444129483139e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.01444129483139e-07!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.09358020431739e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.2575690705069e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.27220210812484e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.27220210812484e-07!GO:0043566;structure-specific DNA binding;1.29909849365731e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.49779618779188e-07!GO:0010468;regulation of gene expression;1.73197643334281e-07!GO:0006364;rRNA processing;2.15085168250337e-07!GO:0006754;ATP biosynthetic process;2.84404446135483e-07!GO:0006753;nucleoside phosphate metabolic process;2.84404446135483e-07!GO:0016072;rRNA metabolic process;2.88273014576934e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.94386701188162e-07!GO:0000775;chromosome, pericentric region;3.03977272493545e-07!GO:0051170;nuclear import;3.22663651953531e-07!GO:0009060;aerobic respiration;3.40739650194361e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.76847488538675e-07!GO:0044440;endosomal part;4.26764204213983e-07!GO:0010008;endosome membrane;4.26764204213983e-07!GO:0003697;single-stranded DNA binding;4.91768878953862e-07!GO:0046034;ATP metabolic process;4.93395084095298e-07!GO:0016563;transcription activator activity;5.62024056522711e-07!GO:0065007;biological regulation;6.00904789956821e-07!GO:0005667;transcription factor complex;7.5039293566636e-07!GO:0005819;spindle;7.51291108379122e-07!GO:0045333;cellular respiration;7.93866068715153e-07!GO:0006606;protein import into nucleus;8.44249113081008e-07!GO:0030120;vesicle coat;8.77517278103002e-07!GO:0030662;coated vesicle membrane;8.77517278103002e-07!GO:0005839;proteasome core complex (sensu Eukaryota);8.88222142554344e-07!GO:0043069;negative regulation of programmed cell death;9.17960552607793e-07!GO:0007005;mitochondrion organization and biogenesis;9.65828720738443e-07!GO:0032774;RNA biosynthetic process;1.01982110582784e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.05536632426128e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.10786635491235e-06!GO:0051028;mRNA transport;1.19289190044626e-06!GO:0043066;negative regulation of apoptosis;1.23407573148202e-06!GO:0005788;endoplasmic reticulum lumen;1.23407573148202e-06!GO:0016568;chromatin modification;1.23758316100627e-06!GO:0044431;Golgi apparatus part;1.24650797856525e-06!GO:0016564;transcription repressor activity;1.26032481849126e-06!GO:0006916;anti-apoptosis;1.26596437175469e-06!GO:0000151;ubiquitin ligase complex;1.31107930385807e-06!GO:0006351;transcription, DNA-dependent;1.32482462352398e-06!GO:0003713;transcription coactivator activity;1.48687750814455e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.51502298590879e-06!GO:0000245;spliceosome assembly;1.53115598436681e-06!GO:0006334;nucleosome assembly;1.56154913397632e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.729227514175e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.80420935245921e-06!GO:0007051;spindle organization and biogenesis;1.80896941810636e-06!GO:0005813;centrosome;1.93538224942471e-06!GO:0048475;coated membrane;1.97170546198549e-06!GO:0030117;membrane coat;1.97170546198549e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.26066264717344e-06!GO:0051188;cofactor biosynthetic process;2.58279202196677e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.61188315460412e-06!GO:0031497;chromatin assembly;2.76276552554281e-06!GO:0003714;transcription corepressor activity;3.03205435600181e-06!GO:0006261;DNA-dependent DNA replication;3.19469973203112e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.37766204036267e-06!GO:0016779;nucleotidyltransferase activity;3.4133206525143e-06!GO:0005815;microtubule organizing center;3.90938539602848e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.97129119159386e-06!GO:0045259;proton-transporting ATP synthase complex;4.60825341438234e-06!GO:0006613;cotranslational protein targeting to membrane;4.81283921876882e-06!GO:0004298;threonine endopeptidase activity;5.38019213937066e-06!GO:0045449;regulation of transcription;5.61577908657997e-06!GO:0005770;late endosome;7.38486989820726e-06!GO:0006099;tricarboxylic acid cycle;1.23670281262918e-05!GO:0046356;acetyl-CoA catabolic process;1.23670281262918e-05!GO:0051187;cofactor catabolic process;1.37650432701426e-05!GO:0016481;negative regulation of transcription;1.4379077523683e-05!GO:0003724;RNA helicase activity;1.45443897634687e-05!GO:0009117;nucleotide metabolic process;1.54481623308173e-05!GO:0051789;response to protein stimulus;1.58522449144759e-05!GO:0006986;response to unfolded protein;1.58522449144759e-05!GO:0051427;hormone receptor binding;1.60327083221096e-05!GO:0003677;DNA binding;1.68536288706694e-05!GO:0005773;vacuole;1.70891824338972e-05!GO:0006752;group transfer coenzyme metabolic process;1.7390163335941e-05!GO:0005798;Golgi-associated vesicle;2.2744618361959e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.41511432307211e-05!GO:0003924;GTPase activity;2.46706545351353e-05!GO:0016740;transferase activity;3.18004867033932e-05!GO:0043623;cellular protein complex assembly;3.43406067911391e-05!GO:0030867;rough endoplasmic reticulum membrane;3.43594348581648e-05!GO:0008654;phospholipid biosynthetic process;3.48548651599686e-05!GO:0035257;nuclear hormone receptor binding;3.56125013075863e-05!GO:0000075;cell cycle checkpoint;4.58672008021215e-05!GO:0006084;acetyl-CoA metabolic process;4.93491881484419e-05!GO:0065009;regulation of a molecular function;5.16659945123529e-05!GO:0009109;coenzyme catabolic process;5.21745890493493e-05!GO:0016023;cytoplasmic membrane-bound vesicle;5.53699587499312e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.69329917641777e-05!GO:0031988;membrane-bound vesicle;5.75530898761413e-05!GO:0009108;coenzyme biosynthetic process;6.09319540798006e-05!GO:0019843;rRNA binding;6.18417795805835e-05!GO:0015980;energy derivation by oxidation of organic compounds;6.22330297654733e-05!GO:0000139;Golgi membrane;6.32216823412327e-05!GO:0000323;lytic vacuole;6.42560664670024e-05!GO:0005764;lysosome;6.42560664670024e-05!GO:0045786;negative regulation of progression through cell cycle;6.42560664670024e-05!GO:0006355;regulation of transcription, DNA-dependent;7.50372291779045e-05!GO:0016787;hydrolase activity;8.09232175093116e-05!GO:0048522;positive regulation of cellular process;8.9073183867309e-05!GO:0005657;replication fork;0.000100350427030493!GO:0000776;kinetochore;0.000100350427030493!GO:0031252;leading edge;0.000114255670859651!GO:0042802;identical protein binding;0.000121644287216849!GO:0043021;ribonucleoprotein binding;0.000122926130679123!GO:0008361;regulation of cell size;0.000136403501176276!GO:0005769;early endosome;0.000140160757368553!GO:0005762;mitochondrial large ribosomal subunit;0.000144981918860289!GO:0000315;organellar large ribosomal subunit;0.000144981918860289!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000147505850648455!GO:0006793;phosphorus metabolic process;0.000155327257828512!GO:0006796;phosphate metabolic process;0.000155327257828512!GO:0016363;nuclear matrix;0.000168804557179139!GO:0051168;nuclear export;0.000220782666964887!GO:0045454;cell redox homeostasis;0.000248900704900342!GO:0051329;interphase of mitotic cell cycle;0.000251195898340609!GO:0016049;cell growth;0.000256177383732911!GO:0003684;damaged DNA binding;0.000261382517113188!GO:0048471;perinuclear region of cytoplasm;0.000271469884601644!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000281277597381121!GO:0000314;organellar small ribosomal subunit;0.000291585872357366!GO:0005763;mitochondrial small ribosomal subunit;0.000291585872357366!GO:0051052;regulation of DNA metabolic process;0.000315418140143435!GO:0006302;double-strand break repair;0.000315418140143435!GO:0006402;mRNA catabolic process;0.000318885699869435!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000355213129711348!GO:0015399;primary active transmembrane transporter activity;0.000355213129711348!GO:0016310;phosphorylation;0.000378929025902668!GO:0031982;vesicle;0.000389896780906985!GO:0003682;chromatin binding;0.000412362359964094!GO:0016859;cis-trans isomerase activity;0.000424261867100288!GO:0008186;RNA-dependent ATPase activity;0.000424261867100288!GO:0005525;GTP binding;0.000438858741563563!GO:0007088;regulation of mitosis;0.000454141323710385!GO:0003899;DNA-directed RNA polymerase activity;0.000466595743789213!GO:0007010;cytoskeleton organization and biogenesis;0.000474612104458443!GO:0031410;cytoplasmic vesicle;0.000477134787501683!GO:0003690;double-stranded DNA binding;0.000482339600631574!GO:0007052;mitotic spindle organization and biogenesis;0.000492058115143042!GO:0006414;translational elongation;0.000510408966162745!GO:0003729;mRNA binding;0.000524000023579601!GO:0051325;interphase;0.000546761646676037!GO:0005885;Arp2/3 protein complex;0.000583136345930064!GO:0051252;regulation of RNA metabolic process;0.000617235402466398!GO:0006612;protein targeting to membrane;0.00063235267166711!GO:0031072;heat shock protein binding;0.00066007220425965!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000685627135510532!GO:0006401;RNA catabolic process;0.000689692274137601!GO:0005791;rough endoplasmic reticulum;0.000697915748644857!GO:0033116;ER-Golgi intermediate compartment membrane;0.000727420160784472!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000777812153401976!GO:0046489;phosphoinositide biosynthetic process;0.0007944719497182!GO:0046474;glycerophospholipid biosynthetic process;0.0007944719497182!GO:0015992;proton transport;0.000854221394413918!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000865162631937949!GO:0005048;signal sequence binding;0.000879750527878217!GO:0006818;hydrogen transport;0.000879750527878217!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000883799236075323!GO:0000786;nucleosome;0.00088452414544617!GO:0030521;androgen receptor signaling pathway;0.000906364944836209!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00097571694403717!GO:0008094;DNA-dependent ATPase activity;0.00105903832923593!GO:0004004;ATP-dependent RNA helicase activity;0.00111791453257827!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00116235132725069!GO:0007059;chromosome segregation;0.00126362177646465!GO:0042770;DNA damage response, signal transduction;0.00142030264122231!GO:0048500;signal recognition particle;0.00144757200653742!GO:0007093;mitotic cell cycle checkpoint;0.00144815784939762!GO:0019899;enzyme binding;0.00161030597637148!GO:0006289;nucleotide-excision repair;0.00170280545057296!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00170448702023395!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00170448702023395!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00170448702023395!GO:0045941;positive regulation of transcription;0.00171493490395814!GO:0043681;protein import into mitochondrion;0.0017496925239223!GO:0006310;DNA recombination;0.00179347731077695!GO:0006091;generation of precursor metabolites and energy;0.00179347731077695!GO:0016491;oxidoreductase activity;0.0018297156332836!GO:0007243;protein kinase cascade;0.00186851350645745!GO:0043488;regulation of mRNA stability;0.00187137319551991!GO:0043487;regulation of RNA stability;0.00187137319551991!GO:0006891;intra-Golgi vesicle-mediated transport;0.00203198632662039!GO:0005874;microtubule;0.00208344865606128!GO:0019867;outer membrane;0.00208344865606128!GO:0003702;RNA polymerase II transcription factor activity;0.00224394904336981!GO:0030663;COPI coated vesicle membrane;0.00251002825209763!GO:0030126;COPI vesicle coat;0.00251002825209763!GO:0001558;regulation of cell growth;0.00267186713625523!GO:0008168;methyltransferase activity;0.00283157932574828!GO:0031968;organelle outer membrane;0.00283157932574828!GO:0044452;nucleolar part;0.00291445855738566!GO:0043492;ATPase activity, coupled to movement of substances;0.00295231569920615!GO:0006497;protein amino acid lipidation;0.00296048762163999!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00300139353422687!GO:0043065;positive regulation of apoptosis;0.0030026656188062!GO:0043284;biopolymer biosynthetic process;0.00300971213082852!GO:0016197;endosome transport;0.00306190141740901!GO:0006352;transcription initiation;0.00308864002059554!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00310365537253115!GO:0045047;protein targeting to ER;0.00310365537253115!GO:0008312;7S RNA binding;0.00312636194372627!GO:0030132;clathrin coat of coated pit;0.00323477175177402!GO:0045893;positive regulation of transcription, DNA-dependent;0.00326475221275634!GO:0000059;protein import into nucleus, docking;0.00331459360105874!GO:0016741;transferase activity, transferring one-carbon groups;0.00335301143426218!GO:0009165;nucleotide biosynthetic process;0.00336756969296739!GO:0030518;steroid hormone receptor signaling pathway;0.00338610538920219!GO:0042158;lipoprotein biosynthetic process;0.00339590984685499!GO:0005637;nuclear inner membrane;0.00340128869436196!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.003502376741041!GO:0015631;tubulin binding;0.00354130862234605!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00356656433943461!GO:0015002;heme-copper terminal oxidase activity;0.00356656433943461!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00356656433943461!GO:0004129;cytochrome-c oxidase activity;0.00356656433943461!GO:0000049;tRNA binding;0.003607447867124!GO:0007034;vacuolar transport;0.003607447867124!GO:0030133;transport vesicle;0.003607447867124!GO:0006275;regulation of DNA replication;0.00373976390875982!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00374069002817088!GO:0045892;negative regulation of transcription, DNA-dependent;0.00378550372352858!GO:0008632;apoptotic program;0.00390204799141857!GO:0032561;guanyl ribonucleotide binding;0.00392869255116424!GO:0019001;guanyl nucleotide binding;0.00392869255116424!GO:0043068;positive regulation of programmed cell death;0.00400179037020763!GO:0050790;regulation of catalytic activity;0.00416486669103605!GO:0006626;protein targeting to mitochondrion;0.0042899555346332!GO:0007021;tubulin folding;0.00435744674464184!GO:0003711;transcription elongation regulator activity;0.00442106458348673!GO:0031902;late endosome membrane;0.00453303843685614!GO:0045045;secretory pathway;0.00457231677829403!GO:0008270;zinc ion binding;0.00463021784578952!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00465442710700458!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00470996449809934!GO:0030137;COPI-coated vesicle;0.00471521545229429!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00501531042047931!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00503223364385572!GO:0003678;DNA helicase activity;0.00513021233403044!GO:0046483;heterocycle metabolic process;0.00513361300475889!GO:0005684;U2-dependent spliceosome;0.00537155697930158!GO:0046519;sphingoid metabolic process;0.00545546225864914!GO:0043624;cellular protein complex disassembly;0.00548130141883676!GO:0048518;positive regulation of biological process;0.00571447708666523!GO:0000922;spindle pole;0.00585317181440737!GO:0048468;cell development;0.00589851046908213!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00590175801982754!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00590175801982754!GO:0016044;membrane organization and biogenesis;0.0059955574392455!GO:0006839;mitochondrial transport;0.00600655147214606!GO:0007017;microtubule-based process;0.00600655147214606!GO:0035258;steroid hormone receptor binding;0.00605361117385373!GO:0006650;glycerophospholipid metabolic process;0.00609103310627025!GO:0006509;membrane protein ectodomain proteolysis;0.0061067502813796!GO:0033619;membrane protein proteolysis;0.0061067502813796!GO:0051087;chaperone binding;0.00628585821643227!GO:0006505;GPI anchor metabolic process;0.00633441611038131!GO:0008047;enzyme activator activity;0.00633441611038131!GO:0046467;membrane lipid biosynthetic process;0.00647159186231585!GO:0030658;transport vesicle membrane;0.00686512992502081!GO:0008139;nuclear localization sequence binding;0.00693828229093814!GO:0006506;GPI anchor biosynthetic process;0.00693828229093814!GO:0006284;base-excision repair;0.00695653884287186!GO:0016584;nucleosome positioning;0.00721057492735142!GO:0005905;coated pit;0.00743559986253446!GO:0030118;clathrin coat;0.00765140668891455!GO:0051101;regulation of DNA binding;0.00770229748552323!GO:0016251;general RNA polymerase II transcription factor activity;0.00781106188455042!GO:0008033;tRNA processing;0.00784903710421003!GO:0046914;transition metal ion binding;0.00785077958237489!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00785077958237489!GO:0006611;protein export from nucleus;0.00785077958237489!GO:0007041;lysosomal transport;0.00785077958237489!GO:0051098;regulation of binding;0.00786014485392513!GO:0005876;spindle microtubule;0.00792428591358915!GO:0005741;mitochondrial outer membrane;0.00798231110987363!GO:0048487;beta-tubulin binding;0.00819793245493342!GO:0046983;protein dimerization activity;0.00848443759183655!GO:0050681;androgen receptor binding;0.00864005026284995!GO:0005774;vacuolar membrane;0.00883115221427488!GO:0000209;protein polyubiquitination;0.00884092709397126!GO:0033673;negative regulation of kinase activity;0.00919623871304384!GO:0006469;negative regulation of protein kinase activity;0.00919623871304384!GO:0006672;ceramide metabolic process;0.00919836821693491!GO:0006383;transcription from RNA polymerase III promoter;0.00929882722891722!GO:0009112;nucleobase metabolic process;0.00946942084600908!GO:0008092;cytoskeletal protein binding;0.00952310515947781!GO:0043022;ribosome binding;0.00956305795546229!GO:0030027;lamellipodium;0.00974240261473225!GO:0022890;inorganic cation transmembrane transporter activity;0.0100551194686772!GO:0007040;lysosome organization and biogenesis;0.010360696436742!GO:0051348;negative regulation of transferase activity;0.0105967310546048!GO:0006417;regulation of translation;0.0107880179314462!GO:0032984;macromolecular complex disassembly;0.0107880179314462!GO:0016272;prefoldin complex;0.0112682383655422!GO:0032200;telomere organization and biogenesis;0.0114449660212797!GO:0000723;telomere maintenance;0.0114449660212797!GO:0005869;dynactin complex;0.0115043339931354!GO:0006892;post-Golgi vesicle-mediated transport;0.0118865697064048!GO:0017166;vinculin binding;0.0122586376574851!GO:0005100;Rho GTPase activator activity;0.0123460247544976!GO:0006950;response to stress;0.0124033858953268!GO:0030384;phosphoinositide metabolic process;0.0124955997244611!GO:0004518;nuclease activity;0.0124955997244611!GO:0043433;negative regulation of transcription factor activity;0.0125004389965654!GO:0005832;chaperonin-containing T-complex;0.0127677805906167!GO:0031124;mRNA 3'-end processing;0.0130639265092739!GO:0046966;thyroid hormone receptor binding;0.0131360792316176!GO:0051338;regulation of transferase activity;0.0131876668028185!GO:0042670;retinal cone cell differentiation;0.0132567281888549!GO:0051281;positive regulation of release of sequestered calcium ion into cytosol;0.0132567281888549!GO:0046549;retinal cone cell development;0.0132567281888549!GO:0044262;cellular carbohydrate metabolic process;0.0132710958795872!GO:0032508;DNA duplex unwinding;0.0132948722047873!GO:0032392;DNA geometric change;0.0132948722047873!GO:0046822;regulation of nucleocytoplasmic transport;0.0136758211674657!GO:0009967;positive regulation of signal transduction;0.013900128962!GO:0008022;protein C-terminus binding;0.0141446432892319!GO:0045792;negative regulation of cell size;0.0141446432892319!GO:0008180;signalosome;0.0143096309695508!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0143135898552304!GO:0000339;RNA cap binding;0.0143547170330812!GO:0040008;regulation of growth;0.0146900738999359!GO:0051271;negative regulation of cell motility;0.0148551546271151!GO:0031577;spindle checkpoint;0.0151258950271131!GO:0043241;protein complex disassembly;0.0152586436782347!GO:0005862;muscle thin filament tropomyosin;0.0152586436782347!GO:0004527;exonuclease activity;0.0153406446679675!GO:0030032;lamellipodium biogenesis;0.0154029093402445!GO:0008629;induction of apoptosis by intracellular signals;0.0156350264940777!GO:0030125;clathrin vesicle coat;0.0158710275817685!GO:0030665;clathrin coated vesicle membrane;0.0158710275817685!GO:0030660;Golgi-associated vesicle membrane;0.0160433198604936!GO:0009116;nucleoside metabolic process;0.0160578492804461!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0161787390207148!GO:0007050;cell cycle arrest;0.0165403908704446!GO:0004674;protein serine/threonine kinase activity;0.0166466833476093!GO:0001726;ruffle;0.0166466833476093!GO:0000096;sulfur amino acid metabolic process;0.0170944158595349!GO:0030308;negative regulation of cell growth;0.0172362717190647!GO:0048146;positive regulation of fibroblast proliferation;0.0174425829541127!GO:0031529;ruffle organization and biogenesis;0.0175518652794961!GO:0008017;microtubule binding;0.0177108092954659!GO:0007006;mitochondrial membrane organization and biogenesis;0.0177108092954659!GO:0006595;polyamine metabolic process;0.0179023989458491!GO:0030880;RNA polymerase complex;0.0180915538821427!GO:0008250;oligosaccharyl transferase complex;0.0188149084803618!GO:0007004;telomere maintenance via telomerase;0.0188821260950985!GO:0044437;vacuolar part;0.0189784635769558!GO:0031901;early endosome membrane;0.0192633023306396!GO:0030119;AP-type membrane coat adaptor complex;0.0199423326207459!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0201504755835958!GO:0007033;vacuole organization and biogenesis;0.0203015283625079!GO:0031326;regulation of cellular biosynthetic process;0.0204482041104093!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0204759392383514!GO:0004177;aminopeptidase activity;0.0210056882416531!GO:0048144;fibroblast proliferation;0.021036317067879!GO:0048145;regulation of fibroblast proliferation;0.021036317067879!GO:0006405;RNA export from nucleus;0.0210431601642638!GO:0006778;porphyrin metabolic process;0.0210431601642638!GO:0033013;tetrapyrrole metabolic process;0.0210431601642638!GO:0030176;integral to endoplasmic reticulum membrane;0.0210431601642638!GO:0043549;regulation of kinase activity;0.0210773139018548!GO:0051128;regulation of cellular component organization and biogenesis;0.0214141349057267!GO:0000118;histone deacetylase complex;0.0219637722371501!GO:0003746;translation elongation factor activity;0.0221881548852096!GO:0051920;peroxiredoxin activity;0.0223925695064404!GO:0030134;ER to Golgi transport vesicle;0.0227083285060315!GO:0000152;nuclear ubiquitin ligase complex;0.0229312356841085!GO:0030522;intracellular receptor-mediated signaling pathway;0.0229312356841085!GO:0003725;double-stranded RNA binding;0.0231130735993387!GO:0006268;DNA unwinding during replication;0.023458862948562!GO:0031570;DNA integrity checkpoint;0.0252073586936169!GO:0016853;isomerase activity;0.0252345478057087!GO:0008637;apoptotic mitochondrial changes;0.0253962989744764!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0256991347310473!GO:0000428;DNA-directed RNA polymerase complex;0.0256991347310473!GO:0006607;NLS-bearing substrate import into nucleus;0.0256991347310473!GO:0042393;histone binding;0.0256991347310473!GO:0006144;purine base metabolic process;0.0261694749262795!GO:0043154;negative regulation of caspase activity;0.0262079729465407!GO:0005669;transcription factor TFIID complex;0.0262905217701951!GO:0030336;negative regulation of cell migration;0.0264807608927383!GO:0005765;lysosomal membrane;0.0271093958372565!GO:0045859;regulation of protein kinase activity;0.0281970386781373!GO:0032940;secretion by cell;0.0286433016722579!GO:0006458;'de novo' protein folding;0.0290405984164118!GO:0051084;'de novo' posttranslational protein folding;0.0290405984164118!GO:0003923;GPI-anchor transamidase activity;0.0290405984164118!GO:0016255;attachment of GPI anchor to protein;0.0290405984164118!GO:0042765;GPI-anchor transamidase complex;0.0290405984164118!GO:0004576;oligosaccharyl transferase activity;0.0290725650607264!GO:0006376;mRNA splice site selection;0.0293050743912368!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0293050743912368!GO:0045926;negative regulation of growth;0.0303529490086889!GO:0047485;protein N-terminus binding;0.0305904060212029!GO:0043596;nuclear replication fork;0.0309270703967089!GO:0000781;chromosome, telomeric region;0.0311124606436263!GO:0007264;small GTPase mediated signal transduction;0.0313087138650389!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0314711879005413!GO:0030503;regulation of cell redox homeostasis;0.0317170627962818!GO:0009893;positive regulation of metabolic process;0.0320913626063181!GO:0035035;histone acetyltransferase binding;0.032451453015074!GO:0032906;transforming growth factor-beta2 production;0.032451453015074!GO:0032909;regulation of transforming growth factor-beta2 production;0.032451453015074!GO:0048660;regulation of smooth muscle cell proliferation;0.0325209547002379!GO:0031625;ubiquitin protein ligase binding;0.0325209547002379!GO:0030131;clathrin adaptor complex;0.0327405721394932!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0327471557044476!GO:0010257;NADH dehydrogenase complex assembly;0.0327471557044476!GO:0033108;mitochondrial respiratory chain complex assembly;0.0327471557044476!GO:0008426;protein kinase C inhibitor activity;0.0332506103305472!GO:0040013;negative regulation of locomotion;0.033646309190867!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0337400027161002!GO:0030911;TPR domain binding;0.0339447329296485!GO:0005096;GTPase activator activity;0.0339447329296485!GO:0009889;regulation of biosynthetic process;0.0340946038437196!GO:0043189;H4/H2A histone acetyltransferase complex;0.0343396365008085!GO:0035267;NuA4 histone acetyltransferase complex;0.0347967434857333!GO:0009066;aspartate family amino acid metabolic process;0.0347967434857333!GO:0016407;acetyltransferase activity;0.0348097547468369!GO:0001836;release of cytochrome c from mitochondria;0.0351978531782701!GO:0051090;regulation of transcription factor activity;0.0353034197322763!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0353034197322763!GO:0055083;monovalent inorganic anion homeostasis;0.0353034197322763!GO:0055064;chloride ion homeostasis;0.0353034197322763!GO:0030644;cellular chloride ion homeostasis;0.0353034197322763!GO:0031123;RNA 3'-end processing;0.0354774315412674!GO:0050750;low-density lipoprotein receptor binding;0.0359044241125938!GO:0043086;negative regulation of catalytic activity;0.0363938727206713!GO:0043281;regulation of caspase activity;0.0369670347752302!GO:0005784;translocon complex;0.0370890095776601!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0373981314114045!GO:0008538;proteasome activator activity;0.0378967037634546!GO:0031371;ubiquitin conjugating enzyme complex;0.0379304904501797!GO:0000792;heterochromatin;0.0379308459591062!GO:0004563;beta-N-acetylhexosaminidase activity;0.0381912769968598!GO:0018196;peptidyl-asparagine modification;0.0383024163232382!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0383024163232382!GO:0033239;negative regulation of amine metabolic process;0.0383024163232382!GO:0045763;negative regulation of amino acid metabolic process;0.0383024163232382!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0383024163232382!GO:0042168;heme metabolic process;0.0383677627328671!GO:0022415;viral reproductive process;0.038450777845338!GO:0005680;anaphase-promoting complex;0.0392266050563543!GO:0030496;midbody;0.0392266050563543!GO:0000082;G1/S transition of mitotic cell cycle;0.0392266050563543!GO:0008408;3'-5' exonuclease activity;0.0413268359713852!GO:0030149;sphingolipid catabolic process;0.0415400583341307!GO:0030127;COPII vesicle coat;0.0421599638698264!GO:0012507;ER to Golgi transport vesicle membrane;0.0421599638698264!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0423563414594637!GO:0042026;protein refolding;0.0423812565997113!GO:0000228;nuclear chromosome;0.0423938857934912!GO:0008276;protein methyltransferase activity;0.0423938857934912!GO:0050839;cell adhesion molecule binding;0.0423938857934912!GO:0030140;trans-Golgi network transport vesicle;0.0425860451016871!GO:0007346;regulation of progression through mitotic cell cycle;0.0433361785831294!GO:0006378;mRNA polyadenylation;0.0439782589612011!GO:0016126;sterol biosynthetic process;0.046152977259948!GO:0009451;RNA modification;0.046152977259948!GO:0022411;cellular component disassembly;0.0463864381994649!GO:0017134;fibroblast growth factor binding;0.0464884616605347!GO:0030036;actin cytoskeleton organization and biogenesis;0.0468749045825296!GO:0006984;ER-nuclear signaling pathway;0.0469285854995914!GO:0051540;metal cluster binding;0.0469285854995914!GO:0051536;iron-sulfur cluster binding;0.0469285854995914!GO:0030508;thiol-disulfide exchange intermediate activity;0.0470936041745357!GO:0008601;protein phosphatase type 2A regulator activity;0.0473586016400482!GO:0045334;clathrin-coated endocytic vesicle;0.0473586016400482!GO:0051336;regulation of hydrolase activity;0.0474662994178862!GO:0007569;cell aging;0.0474662994178862!GO:0000077;DNA damage checkpoint;0.0477785052931461!GO:0005758;mitochondrial intermembrane space;0.0481425677972755!GO:0007030;Golgi organization and biogenesis;0.0482552394363872!GO:0051085;chaperone cofactor-dependent protein folding;0.0485753025786607!GO:0006360;transcription from RNA polymerase I promoter;0.0493200152012283 | |||
|sample_id=10443 | |sample_id=10443 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 98: | ||
|sample_tissue=ANATOMICAL SYSTEM | |sample_tissue=ANATOMICAL SYSTEM | ||
|top_motifs=HBP1_HMGB_SSRP1_UBTF:3.2872623684;PDX1:2.00811885541;CDX1,2,4:1.48587891535;AIRE:1.39976003818;PAX4:1.37354642507;NKX6-1,2:1.34128812378;NKX2-3_NKX2-5:1.33197744756;ZNF148:1.32957027134;POU1F1:1.3276919437;FOXD3:1.133492663;RXR{A,B,G}:1.12267838824;RBPJ:1.04453803248;NFY{A,B,C}:0.970479639428;XCPE1{core}:0.967286151607;HSF1,2:0.944246020282;STAT1,3:0.919760787989;EN1,2:0.884387219211;GFI1:0.867658218383;GFI1B:0.862422405422;EVI1:0.829231246785;TEF:0.824838607509;ONECUT1,2:0.822091690224;ZNF384:0.773898687234;TP53:0.725780010081;ZNF143:0.720273457668;FOX{I1,J2}:0.713264021182;NRF1:0.702448412387;MYB:0.697084668436;LMO2:0.690243843022;POU5F1:0.689589763773;PITX1..3:0.685112224933;E2F1..5:0.656635010874;ZBTB16:0.65615934004;PAX8:0.628894587304;FOXQ1:0.624094619765;HOXA9_MEIS1:0.619573516319;PBX1:0.595979331749;PPARG:0.578039920521;NKX3-1:0.561322941457;HOX{A5,B5}:0.553988585303;OCT4_SOX2{dimer}:0.532881349349;GZF1:0.509687305461;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.500902395433;ZIC1..3:0.489553190151;PRRX1,2:0.485294120372;TEAD1:0.485113497665;bHLH_family:0.48198365126;TAL1_TCF{3,4,12}:0.46702500888;NR6A1:0.451496614146;LHX3,4:0.450833794569;MZF1:0.450476926969;GATA4:0.438001166455;NR3C1:0.437115673149;HMGA1,2:0.424060666572;HOX{A6,A7,B6,B7}:0.418663452315;NFIX:0.412923568901;FOXL1:0.40060005516;GCM1,2:0.39750611034;SREBF1,2:0.394912179799;STAT5{A,B}:0.373082848216;VSX1,2:0.346945067987;CDC5L:0.34554581681;UFEwm:0.306709953598;HOX{A4,D4}:0.300838092338;ALX4:0.273626968154;FOXP1:0.270582021995;CUX2:0.266795655376;TOPORS:0.246916493842;PRDM1:0.231033030098;IKZF2:0.219831570253;SP1:0.178522343832;IRF7:0.178346099155;BACH2:0.139771938244;FOSL2:0.131523093538;KLF4:0.121129399388;HES1:0.0990019886885;ELK1,4_GABP{A,B1}:0.0935854123893;ARID5B:0.0667275482118;POU3F1..4:0.0664315822972;TFDP1:0.0531244412446;PAX3,7:0.0280837127459;SOX{8,9,10}:0.0241472566283;MEF2{A,B,C,D}:0.00320479588323;ZBTB6:-0.000887851895816;RREB1:-0.00504723342436;RFX2..5_RFXANK_RFXAP:-0.0268629132074;MTF1:-0.027100415493;ESR1:-0.0377064222059;FOXM1:-0.0398772004491;IRF1,2:-0.0558486375921;GTF2I:-0.0616117305391;CRX:-0.0710500553672;NFE2:-0.0829917310284;FOXP3:-0.09008295751;RFX1:-0.101991040604;NKX2-2,8:-0.126237191336;HAND1,2:-0.134039773413;FOS_FOS{B,L1}_JUN{B,D}:-0.163552790605;DBP:-0.164197850031;MAZ:-0.175022773003;ZFP161:-0.178587867426;GTF2A1,2:-0.180014925805;NFIL3:-0.188684077184;DMAP1_NCOR{1,2}_SMARC:-0.193321477033;MYBL2:-0.193411063294;NFKB1_REL_RELA:-0.200211626713;HLF:-0.203698343436;CEBPA,B_DDIT3:-0.222945723012;SRF:-0.228999788514;FOX{D1,D2}:-0.268750008076;HNF1A:-0.280183759325;SPIB:-0.301410676756;TFAP2{A,C}:-0.325999183783;PATZ1:-0.32731246142;POU2F1..3:-0.345824744484;TBX4,5:-0.354808680714;STAT2,4,6:-0.360276448756;EGR1..3:-0.362102301582;MED-1{core}:-0.378575528123;TGIF1:-0.378710136158;RORA:-0.380582433497;HNF4A_NR2F1,2:-0.390017247355;SNAI1..3:-0.399017697978;ADNP_IRX_SIX_ZHX:-0.402696111604;TFAP2B:-0.41261819306;AHR_ARNT_ARNT2:-0.423234122907;EP300:-0.423809472283;REST:-0.425275314664;FOXN1:-0.432979636275;RUNX1..3:-0.436520997882;NANOG{mouse}:-0.475356601567;SOX2:-0.480215003148;EBF1:-0.485617144401;ZEB1:-0.49434215903;BPTF:-0.499112576503;FOXA2:-0.499624041522;NKX3-2:-0.502162508513;TLX2:-0.504233764693;NHLH1,2:-0.513347507377;MTE{core}:-0.515967913594;ETS1,2:-0.519093307132;NFE2L2:-0.52592155496;PAX5:-0.530789496984;MYOD1:-0.53129010876;NR1H4:-0.539535636611;ELF1,2,4:-0.548900855249;PAX2:-0.552214758091;FOXO1,3,4:-0.554666393398;NKX2-1,4:-0.559761979417;SPI1:-0.586044402876;CREB1:-0.59357165036;GATA6:-0.594140014488;ZNF238:-0.608837871307;ATF4:-0.611789513021;TLX1..3_NFIC{dimer}:-0.616382439368;YY1:-0.617506318307;HIC1:-0.624919680713;HIF1A:-0.639527719429;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.643796860174;ATF5_CREB3:-0.663610192491;XBP1:-0.680809538935;GLI1..3:-0.7052729336;NFATC1..3:-0.708222912339;SOX5:-0.760556952226;MAFB:-0.791847324166;TBP:-0.80421499101;TFCP2:-0.816257770664;ALX1:-0.831821553253;SMAD1..7,9:-0.831975866674;LEF1_TCF7_TCF7L1,2:-0.84511309129;MYFfamily:-0.854636786963;NANOG:-0.87079400366;NFE2L1:-0.877299384056;ATF6:-0.882512269194;AR:-0.883328892571;ATF2:-0.891181025241;BREu{core}:-0.902481136382;SOX17:-0.91699502511;IKZF1:-0.961687297635;NR5A1,2:-0.970483588974;ZNF423:-1.01463823562;JUN:-1.08933493638;RXRA_VDR{dimer}:-1.11121128454;FOX{F1,F2,J1}:-1.15837766714;PAX6:-1.15914190913;PAX1,9:-1.38288670449;ESRRA:-1.54273253681;T:-1.57401783415;POU6F1:-1.62574295292;SPZ1:-1.6604107306;TFAP4:-1.78570121965;HMX1:-1.93147977078 | |top_motifs=HBP1_HMGB_SSRP1_UBTF:3.2872623684;PDX1:2.00811885541;CDX1,2,4:1.48587891535;AIRE:1.39976003818;PAX4:1.37354642507;NKX6-1,2:1.34128812378;NKX2-3_NKX2-5:1.33197744756;ZNF148:1.32957027134;POU1F1:1.3276919437;FOXD3:1.133492663;RXR{A,B,G}:1.12267838824;RBPJ:1.04453803248;NFY{A,B,C}:0.970479639428;XCPE1{core}:0.967286151607;HSF1,2:0.944246020282;STAT1,3:0.919760787989;EN1,2:0.884387219211;GFI1:0.867658218383;GFI1B:0.862422405422;EVI1:0.829231246785;TEF:0.824838607509;ONECUT1,2:0.822091690224;ZNF384:0.773898687234;TP53:0.725780010081;ZNF143:0.720273457668;FOX{I1,J2}:0.713264021182;NRF1:0.702448412387;MYB:0.697084668436;LMO2:0.690243843022;POU5F1:0.689589763773;PITX1..3:0.685112224933;E2F1..5:0.656635010874;ZBTB16:0.65615934004;PAX8:0.628894587304;FOXQ1:0.624094619765;HOXA9_MEIS1:0.619573516319;PBX1:0.595979331749;PPARG:0.578039920521;NKX3-1:0.561322941457;HOX{A5,B5}:0.553988585303;OCT4_SOX2{dimer}:0.532881349349;GZF1:0.509687305461;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.500902395433;ZIC1..3:0.489553190151;PRRX1,2:0.485294120372;TEAD1:0.485113497665;bHLH_family:0.48198365126;TAL1_TCF{3,4,12}:0.46702500888;NR6A1:0.451496614146;LHX3,4:0.450833794569;MZF1:0.450476926969;GATA4:0.438001166455;NR3C1:0.437115673149;HMGA1,2:0.424060666572;HOX{A6,A7,B6,B7}:0.418663452315;NFIX:0.412923568901;FOXL1:0.40060005516;GCM1,2:0.39750611034;SREBF1,2:0.394912179799;STAT5{A,B}:0.373082848216;VSX1,2:0.346945067987;CDC5L:0.34554581681;UFEwm:0.306709953598;HOX{A4,D4}:0.300838092338;ALX4:0.273626968154;FOXP1:0.270582021995;CUX2:0.266795655376;TOPORS:0.246916493842;PRDM1:0.231033030098;IKZF2:0.219831570253;SP1:0.178522343832;IRF7:0.178346099155;BACH2:0.139771938244;FOSL2:0.131523093538;KLF4:0.121129399388;HES1:0.0990019886885;ELK1,4_GABP{A,B1}:0.0935854123893;ARID5B:0.0667275482118;POU3F1..4:0.0664315822972;TFDP1:0.0531244412446;PAX3,7:0.0280837127459;SOX{8,9,10}:0.0241472566283;MEF2{A,B,C,D}:0.00320479588323;ZBTB6:-0.000887851895816;RREB1:-0.00504723342436;RFX2..5_RFXANK_RFXAP:-0.0268629132074;MTF1:-0.027100415493;ESR1:-0.0377064222059;FOXM1:-0.0398772004491;IRF1,2:-0.0558486375921;GTF2I:-0.0616117305391;CRX:-0.0710500553672;NFE2:-0.0829917310284;FOXP3:-0.09008295751;RFX1:-0.101991040604;NKX2-2,8:-0.126237191336;HAND1,2:-0.134039773413;FOS_FOS{B,L1}_JUN{B,D}:-0.163552790605;DBP:-0.164197850031;MAZ:-0.175022773003;ZFP161:-0.178587867426;GTF2A1,2:-0.180014925805;NFIL3:-0.188684077184;DMAP1_NCOR{1,2}_SMARC:-0.193321477033;MYBL2:-0.193411063294;NFKB1_REL_RELA:-0.200211626713;HLF:-0.203698343436;CEBPA,B_DDIT3:-0.222945723012;SRF:-0.228999788514;FOX{D1,D2}:-0.268750008076;HNF1A:-0.280183759325;SPIB:-0.301410676756;TFAP2{A,C}:-0.325999183783;PATZ1:-0.32731246142;POU2F1..3:-0.345824744484;TBX4,5:-0.354808680714;STAT2,4,6:-0.360276448756;EGR1..3:-0.362102301582;MED-1{core}:-0.378575528123;TGIF1:-0.378710136158;RORA:-0.380582433497;HNF4A_NR2F1,2:-0.390017247355;SNAI1..3:-0.399017697978;ADNP_IRX_SIX_ZHX:-0.402696111604;TFAP2B:-0.41261819306;AHR_ARNT_ARNT2:-0.423234122907;EP300:-0.423809472283;REST:-0.425275314664;FOXN1:-0.432979636275;RUNX1..3:-0.436520997882;NANOG{mouse}:-0.475356601567;SOX2:-0.480215003148;EBF1:-0.485617144401;ZEB1:-0.49434215903;BPTF:-0.499112576503;FOXA2:-0.499624041522;NKX3-2:-0.502162508513;TLX2:-0.504233764693;NHLH1,2:-0.513347507377;MTE{core}:-0.515967913594;ETS1,2:-0.519093307132;NFE2L2:-0.52592155496;PAX5:-0.530789496984;MYOD1:-0.53129010876;NR1H4:-0.539535636611;ELF1,2,4:-0.548900855249;PAX2:-0.552214758091;FOXO1,3,4:-0.554666393398;NKX2-1,4:-0.559761979417;SPI1:-0.586044402876;CREB1:-0.59357165036;GATA6:-0.594140014488;ZNF238:-0.608837871307;ATF4:-0.611789513021;TLX1..3_NFIC{dimer}:-0.616382439368;YY1:-0.617506318307;HIC1:-0.624919680713;HIF1A:-0.639527719429;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.643796860174;ATF5_CREB3:-0.663610192491;XBP1:-0.680809538935;GLI1..3:-0.7052729336;NFATC1..3:-0.708222912339;SOX5:-0.760556952226;MAFB:-0.791847324166;TBP:-0.80421499101;TFCP2:-0.816257770664;ALX1:-0.831821553253;SMAD1..7,9:-0.831975866674;LEF1_TCF7_TCF7L1,2:-0.84511309129;MYFfamily:-0.854636786963;NANOG:-0.87079400366;NFE2L1:-0.877299384056;ATF6:-0.882512269194;AR:-0.883328892571;ATF2:-0.891181025241;BREu{core}:-0.902481136382;SOX17:-0.91699502511;IKZF1:-0.961687297635;NR5A1,2:-0.970483588974;ZNF423:-1.01463823562;JUN:-1.08933493638;RXRA_VDR{dimer}:-1.11121128454;FOX{F1,F2,J1}:-1.15837766714;PAX6:-1.15914190913;PAX1,9:-1.38288670449;ESRRA:-1.54273253681;T:-1.57401783415;POU6F1:-1.62574295292;SPZ1:-1.6604107306;TFAP4:-1.78570121965;HMX1:-1.93147977078 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10443-106F2;search_select_hide=table117:FF:10443-106F2 | |||
}} | }} | ||
Latest revision as of 14:02, 3 June 2020
| Name: | epithelioid sarcoma cell line:HS-ES-1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11247 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11247
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11247
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.192 |
| 10 | 10 | 0.0761 |
| 100 | 100 | 0.116 |
| 101 | 101 | 0.728 |
| 102 | 102 | 0.655 |
| 103 | 103 | 0.674 |
| 104 | 104 | 0.757 |
| 105 | 105 | 0.499 |
| 106 | 106 | 0.00374 |
| 107 | 107 | 0.0213 |
| 108 | 108 | 0.413 |
| 109 | 109 | 0.251 |
| 11 | 11 | 0.81 |
| 110 | 110 | 0.037 |
| 111 | 111 | 0.784 |
| 112 | 112 | 0.00587 |
| 113 | 113 | 0.103 |
| 114 | 114 | 0.668 |
| 115 | 115 | 0.593 |
| 116 | 116 | 0.851 |
| 117 | 117 | 0.0255 |
| 118 | 118 | 0.543 |
| 119 | 119 | 0.43 |
| 12 | 12 | 0.286 |
| 120 | 120 | 0.471 |
| 121 | 121 | 0.444 |
| 122 | 122 | 0.795 |
| 123 | 123 | 0.42 |
| 124 | 124 | 0.04 |
| 125 | 125 | 0.663 |
| 126 | 126 | 0.663 |
| 127 | 127 | 0.932 |
| 128 | 128 | 0.0979 |
| 129 | 129 | 0.891 |
| 13 | 13 | 0.0288 |
| 130 | 130 | 0.0387 |
| 131 | 131 | 0.956 |
| 132 | 132 | 0.46 |
| 133 | 133 | 0.0301 |
| 134 | 134 | 0.577 |
| 135 | 135 | 0.326 |
| 136 | 136 | 0.146 |
| 137 | 137 | 0.941 |
| 138 | 138 | 0.03 |
| 139 | 139 | 0.288 |
| 14 | 14 | 0.22 |
| 140 | 140 | 0.125 |
| 141 | 141 | 0.746 |
| 142 | 142 | 0.21 |
| 143 | 143 | 0.454 |
| 144 | 144 | 0.366 |
| 145 | 145 | 0.485 |
| 146 | 146 | 0.183 |
| 147 | 147 | 0.805 |
| 148 | 148 | 0.855 |
| 149 | 149 | 0.0988 |
| 15 | 15 | 0.909 |
| 150 | 150 | 0.256 |
| 151 | 151 | 0.413 |
| 152 | 152 | 0.725 |
| 153 | 153 | 0.514 |
| 154 | 154 | 0.85 |
| 155 | 155 | 0.799 |
| 156 | 156 | 0.34 |
| 157 | 157 | 0.391 |
| 158 | 158 | 0.217 |
| 159 | 159 | 0.324 |
| 16 | 16 | 0.447 |
| 160 | 160 | 0.779 |
| 161 | 161 | 0.422 |
| 162 | 162 | 0.263 |
| 163 | 163 | 0.706 |
| 164 | 164 | 0.0236 |
| 165 | 165 | 0.949 |
| 166 | 166 | 0.332 |
| 167 | 167 | 0.539 |
| 168 | 168 | 0.217 |
| 169 | 169 | 0.32 |
| 17 | 17 | 0.939 |
| 18 | 18 | 0.303 |
| 19 | 19 | 0.865 |
| 2 | 2 | 0.145 |
| 20 | 20 | 0.025 |
| 21 | 21 | 0.638 |
| 22 | 22 | 0.69 |
| 23 | 23 | 0.695 |
| 24 | 24 | 0.452 |
| 25 | 25 | 0.397 |
| 26 | 26 | 0.923 |
| 27 | 27 | 0.178 |
| 28 | 28 | 0.792 |
| 29 | 29 | 0.214 |
| 3 | 3 | 0.529 |
| 30 | 30 | 0.942 |
| 31 | 31 | 0.0825 |
| 32 | 32 | 0.319 |
| 33 | 33 | 0.168 |
| 34 | 34 | 0.166 |
| 35 | 35 | 0.0525 |
| 36 | 36 | 0.699 |
| 37 | 37 | 0.21 |
| 38 | 38 | 0.943 |
| 39 | 39 | 0.546 |
| 4 | 4 | 0.0108 |
| 40 | 40 | 0.939 |
| 41 | 41 | 0.177 |
| 42 | 42 | 0.506 |
| 43 | 43 | 0.951 |
| 44 | 44 | 0.75 |
| 45 | 45 | 0.792 |
| 46 | 46 | 0.824 |
| 47 | 47 | 0.9 |
| 48 | 48 | 0.719 |
| 49 | 49 | 0.233 |
| 5 | 5 | 0.708 |
| 50 | 50 | 0.756 |
| 51 | 51 | 0.721 |
| 52 | 52 | 0.105 |
| 53 | 53 | 0.74 |
| 54 | 54 | 0.501 |
| 55 | 55 | 0.256 |
| 56 | 56 | 0.392 |
| 57 | 57 | 0.925 |
| 58 | 58 | 0.1 |
| 59 | 59 | 0.149 |
| 6 | 6 | 0.841 |
| 60 | 60 | 0.0419 |
| 61 | 61 | 0.732 |
| 62 | 62 | 0.355 |
| 63 | 63 | 0.564 |
| 64 | 64 | 0.622 |
| 65 | 65 | 0.411 |
| 66 | 66 | 4.97679e-12 |
| 67 | 67 | 0.394 |
| 68 | 68 | 0.644 |
| 69 | 69 | 0.337 |
| 7 | 7 | 0.663 |
| 70 | 70 | 0.677 |
| 71 | 71 | 0.711 |
| 72 | 72 | 0.704 |
| 73 | 73 | 0.611 |
| 74 | 74 | 0.797 |
| 75 | 75 | 0.029 |
| 76 | 76 | 0.11 |
| 77 | 77 | 0.963 |
| 78 | 78 | 0.3 |
| 79 | 79 | 0.226 |
| 8 | 8 | 0.365 |
| 80 | 80 | 0.41 |
| 81 | 81 | 0.791 |
| 82 | 82 | 0.705 |
| 83 | 83 | 0.428 |
| 84 | 84 | 0.891 |
| 85 | 85 | 0.407 |
| 86 | 86 | 0.45 |
| 87 | 87 | 0.882 |
| 88 | 88 | 0.524 |
| 89 | 89 | 0.379 |
| 9 | 9 | 0.246 |
| 90 | 90 | 0.0832 |
| 91 | 91 | 0.242 |
| 92 | 92 | 0.424 |
| 93 | 93 | 0.898 |
| 94 | 94 | 0.549 |
| 95 | 95 | 0.00987 |
| 96 | 96 | 0.507 |
| 97 | 97 | 0.806 |
| 98 | 98 | 0.507 |
| 99 | 99 | 0.234 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11247
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
DOID:6193 epithelioid sarcoma
EFO:0002091 biological replicate
FF:0000003 cell line sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3350 (mesenchymal cell neoplasm)
6193 (epithelioid sarcoma)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
