FF:10449-106F8: Difference between revisions

Latest revision as of 14:03, 3 June 2020

Name:	cord blood derived cell line:COBL-a untreated
Species:	Human (Homo sapiens)
Library ID:	CNhs11045
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	unclassifiable
cell line	COBL-a
company	NA
collaboration	Chieko Kai (University of Tokyo)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004751

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11045		CAGE		DRX007866		DRR008738

Accession ID Hg19

Library id		BAM		CTSS
CNhs11045		DRZ000163		DRZ001548

Accession ID Hg38

Library id		BAM		CTSS
CNhs11045		DRZ011513		DRZ012898

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.00563
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.577
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0343
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0431
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.00632
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0237
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.071
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.182
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.148
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0.0431
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0.842
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.152
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.00894
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.526
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.0431
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.029
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.00205
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.447
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.00676
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.118
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11045

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.307
MA0003.1	MA0003.1	0.501
MA0004.1	MA0004.1	0.536
MA0006.1	MA0006.1	0.0698
MA0007.1	MA0007.1	0.135
MA0009.1	MA0009.1	0.781
MA0014.1	MA0014.1	0.326
MA0017.1	MA0017.1	0.832
MA0018.2	MA0018.2	6.74228e-5
MA0019.1	MA0019.1	0.874
MA0024.1	MA0024.1	1.33448e-8
MA0025.1	MA0025.1	0.399
MA0027.1	MA0027.1	0.64
MA0028.1	MA0028.1	5.54519e-5
MA0029.1	MA0029.1	0.968
MA0030.1	MA0030.1	0.0523
MA0031.1	MA0031.1	0.0869
MA0035.2	MA0035.2	0.0709
MA0038.1	MA0038.1	0.00342
MA0039.2	MA0039.2	0.144
MA0040.1	MA0040.1	0.0136
MA0041.1	MA0041.1	0.159
MA0042.1	MA0042.1	0.19
MA0043.1	MA0043.1	0.334
MA0046.1	MA0046.1	0.118
MA0047.2	MA0047.2	0.91
MA0048.1	MA0048.1	0.111
MA0050.1	MA0050.1	0.00173
MA0051.1	MA0051.1	0.0138
MA0052.1	MA0052.1	0.013
MA0055.1	MA0055.1	0.0199
MA0057.1	MA0057.1	0.534
MA0058.1	MA0058.1	0.534
MA0059.1	MA0059.1	0.101
MA0060.1	MA0060.1	7.09735e-10
MA0061.1	MA0061.1	7.2313e-14
MA0062.2	MA0062.2	1.22605e-6
MA0065.2	MA0065.2	0.392
MA0066.1	MA0066.1	0.164
MA0067.1	MA0067.1	0.907
MA0068.1	MA0068.1	0.812
MA0069.1	MA0069.1	0.524
MA0070.1	MA0070.1	0.622
MA0071.1	MA0071.1	0.676
MA0072.1	MA0072.1	0.668
MA0073.1	MA0073.1	0.537
MA0074.1	MA0074.1	0.874
MA0076.1	MA0076.1	1.41573e-5
MA0077.1	MA0077.1	0.612
MA0078.1	MA0078.1	0.1
MA0079.2	MA0079.2	0.168
MA0080.2	MA0080.2	0.707
MA0081.1	MA0081.1	0.795
MA0083.1	MA0083.1	0.616
MA0084.1	MA0084.1	0.776
MA0087.1	MA0087.1	0.184
MA0088.1	MA0088.1	0.193
MA0090.1	MA0090.1	3.50421e-5
MA0091.1	MA0091.1	0.00864
MA0092.1	MA0092.1	0.205
MA0093.1	MA0093.1	0.402
MA0099.2	MA0099.2	8.29963e-4
MA0100.1	MA0100.1	0.086
MA0101.1	MA0101.1	5.45375e-18
MA0102.2	MA0102.2	0.707
MA0103.1	MA0103.1	0.236
MA0104.2	MA0104.2	8.24574e-4
MA0105.1	MA0105.1	1.44155e-4
MA0106.1	MA0106.1	0.0541
MA0107.1	MA0107.1	7.32654e-23
MA0108.2	MA0108.2	0.00221
MA0111.1	MA0111.1	0.995
MA0112.2	MA0112.2	0.0352
MA0113.1	MA0113.1	0.0964
MA0114.1	MA0114.1	0.289
MA0115.1	MA0115.1	0.285
MA0116.1	MA0116.1	0.938
MA0117.1	MA0117.1	0.0303
MA0119.1	MA0119.1	0.116
MA0122.1	MA0122.1	0.182
MA0124.1	MA0124.1	0.279
MA0125.1	MA0125.1	0.272
MA0131.1	MA0131.1	0.0576
MA0135.1	MA0135.1	0.0315
MA0136.1	MA0136.1	0.173
MA0137.2	MA0137.2	0.00492
MA0138.2	MA0138.2	0.203
MA0139.1	MA0139.1	0.941
MA0140.1	MA0140.1	0.113
MA0141.1	MA0141.1	0.487
MA0142.1	MA0142.1	0.487
MA0143.1	MA0143.1	0.024
MA0144.1	MA0144.1	0.904
MA0145.1	MA0145.1	0.003
MA0146.1	MA0146.1	0.267
MA0147.1	MA0147.1	0.00106
MA0148.1	MA0148.1	0.961
MA0149.1	MA0149.1	0.245
MA0150.1	MA0150.1	0.157
MA0152.1	MA0152.1	0.135
MA0153.1	MA0153.1	1.43587e-4
MA0154.1	MA0154.1	0.779
MA0155.1	MA0155.1	0.263
MA0156.1	MA0156.1	0.043
MA0157.1	MA0157.1	0.11
MA0159.1	MA0159.1	0.572
MA0160.1	MA0160.1	0.0566
MA0162.1	MA0162.1	0.0334
MA0163.1	MA0163.1	0.21
MA0164.1	MA0164.1	0.834
MA0258.1	MA0258.1	0.283
MA0259.1	MA0259.1	0.0909

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11045

Novel motif	Logo	P-value
1	1	0.863
10	10	0.11
100	100	0.149
101	101	0.347
102	102	0.794
103	103	0.536
104	104	0.646
105	105	0.647
106	106	0.0324
107	107	0.0578
108	108	0.473
109	109	0.819
11	11	0.56
110	110	0.186
111	111	0.381
112	112	0.48
113	113	0.697
114	114	0.41
115	115	0.369
116	116	0.361
117	117	0.448
118	118	0.508
119	119	0.483
12	12	0.564
120	120	0.959
121	121	0.786
122	122	0.267
123	123	0.291
124	124	0.229
125	125	0.583
126	126	0.68
127	127	0.831
128	128	0.0192
129	129	0.364
13	13	0.199
130	130	0.914
131	131	0.738
132	132	0.342
133	133	0.822
134	134	0.253
135	135	0.954
136	136	0.439
137	137	0.427
138	138	0.149
139	139	0.521
14	14	0.767
140	140	0.45
141	141	0.27
142	142	0.92
143	143	0.873
144	144	0.412
145	145	0.534
146	146	0.298
147	147	0.256
148	148	0.241
149	149	0.0059
15	15	0.904
150	150	0.434
151	151	0.269
152	152	0.0415
153	153	0.194
154	154	0.852
155	155	0.446
156	156	0.497
157	157	0.927
158	158	0.733
159	159	0.862
16	16	0.252
160	160	0.466
161	161	0.515
162	162	0.149
163	163	0.618
164	164	0.581
165	165	0.798
166	166	0.927
167	167	0.21
168	168	0.438
169	169	0.0344
17	17	0.32
18	18	0.816
19	19	0.0296
2	2	0.124
20	20	0.148
21	21	0.038
22	22	0.0742
23	23	0.0161
24	24	0.147
25	25	0.536
26	26	0.704
27	27	0.409
28	28	0.662
29	29	0.72
3	3	0.557
30	30	0.0351
31	31	0.262
32	32	0.0226
33	33	0.769
34	34	0.276
35	35	0.767
36	36	0.0605
37	37	0.521
38	38	0.609
39	39	0.177
4	4	0.213
40	40	0.868
41	41	0.304
42	42	0.483
43	43	0.47
44	44	0.887
45	45	0.0519
46	46	0.627
47	47	0.952
48	48	0.965
49	49	0.69
5	5	0.192
50	50	0.778
51	51	0.606
52	52	0.0936
53	53	0.81
54	54	0.272
55	55	7.35814e-4
56	56	0.758
57	57	0.95
58	58	0.816
59	59	0.122
6	6	0.822
60	60	0.201
61	61	0.589
62	62	0.968
63	63	0.409
64	64	0.678
65	65	0.174
66	66	0.057
67	67	0.153
68	68	0.114
69	69	0.0456
7	7	0.679
70	70	0.114
71	71	0.46
72	72	0.241
73	73	0.0626
74	74	0.374
75	75	0.843
76	76	0.327
77	77	0.00438
78	78	0.356
79	79	0.0246
8	8	0.587
80	80	0.236
81	81	0.602
82	82	0.0893
83	83	0.149
84	84	0.272
85	85	0.0203
86	86	0.925
87	87	0.458
88	88	0.449
89	89	0.0246
9	9	0.217
90	90	0.62
91	91	0.405
92	92	0.235
93	93	0.684
94	94	0.969
95	95	0.625
96	96	0.903
97	97	0.0368
98	98	0.237
99	99	0.126

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11045

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0000343 control treatment sample
FF:0104053 umbilical cord blood sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000080 (circulating cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000178 (blood)
0002331 (umbilical cord)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000179 (haemolymphatic fluid)
0000463 (organism substance)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0002390 (hematopoietic system)
0004535 (cardiovascular system)
0002193 (hemolymphoid system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000343 (control treatment sample)
0101035 (hematopoietic cell line sample)
0104053 (umbilical cord blood sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000178,UBERON:0002331,UBERON:0000926,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000478,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0000358,UBERON:0002390,UBERON:0004535,UBERON:0000307,UBERON:0002193,UBERON:0003081,UBERON:0001009,UBERON:0000091,UBERON:0000087,UBERON:0006603,UBERON:0007806,UBERON:0003061,UBERON:0008780,UBERON:0005728
+|DRA_sample_Accession=CAGE@SAMD00004751
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000988,CL:0000548,CL:0000012,CL:0002371,CL:0000004,CL:0000255,CL:0000080
+|accession_numbers=CAGE;DRX007866;DRR008738;DRZ000163;DRZ001548;DRZ011513;DRZ012898
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000178,UBERON:0002331,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000255,CL:0000080
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0000343,FF:0101035,FF:0104053
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:391743..391759,+!p1@IRF4!2.76!571.29!IRF4;;chr11:129245736..129245758,+!p2@BARX2!2.17!147.13!BARX2;;chr12:48276548..48276564,-!p3@VDR!2.14!136.06!VDR;;chr3:111314186..111314204,-!p1@ZBED2!2.05!111.94!ZBED2;;chr3:189349162..189349207,+!p2@TP63!2.04!109.75!TP63;;chr12:103351444..103351461,+!p1@ASCL1!1.99!96.28!ASCL1;;chr17:38020392..38020477,-!p1@IKZF3!1.97!92.52!IKZF3;;chr14:75988831..75988847,+!p2@BATF!1.95!87.71!BATF;;chr13:28494130..28494168,+!p1@PDX1!1.93!84.48!PDX1;;chr1:212873084..212873137,-!p2@BATF3!1.90!78.00!BATF3;;chr2:231090471..231090504,+!p2@SP140!1.90!77.59!SP140;;chr8:11561684..11561751,+!p1@GATA4!1.89!76.54!GATA4;;chr17:45810594..45810608,+!p1@TBX21!1.88!75.29!TBX21;;chr14:75988771..75988826,+!p1@BATF!1.87!97.22!BATF;;chr17:46703687..46703740,-!p1@HOXB9!1.84!67.56!HOXB9;;chr18:55102598..55102623,+!p1@ONECUT2!1.82!64.64!ONECUT2;;chr6:135502501..135502546,+!p1@MYB!1.78!71.11!MYB;;chr4:57522513..57522548,-!p4@HOPX!1.78!59.73!HOPX;;chr4:57522476..57522500,-!p7@HOPX!1.74!54.51!HOPX;;chr10:64576105..64576133,-!p1@EGR2!1.72!103.69!EGR2;;chr6:135502408..135502459,+!p2@MYB!1.65!50.12!MYB;;chr1:212873162..212873188,-!p3@BATF3!1.64!42.40!BATF3;;chr17:40441354..40441410,+!p2@STAT5A!1.61!39.78!STAT5A;;chr6:137815524..137815537,-!p1@OLIG3!1.60!38.53!OLIG3;;chr9:77112244..77112262,+!p1@RORB!1.59!42.71!RORB;;chr11:129245526..129245553,+!p1@BARX2!1.59!37.80!BARX2;;chr7:50344289..50344323,+!p1@IKZF1!1.58!37.38!IKZF1;;chr2:45168875..45168916,+!p1@SIX3!1.55!34.25!SIX3;;chr2:176969228..176969260,+!p1@HOXD11!1.54!34.04!HOXD11;;chr20:50159198..50159299,-!p1@NFATC2!1.53!46.89!NFATC2;;chr1:3569072..3569093,+!p1@TP73!1.52!32.48!TP73;;chr15:60884706..60884743,-!p1@RORA!1.48!144.62!RORA;;chr2:185463247..185463263,+!p1@ZNF804A!1.46!48.03!ZNF804A;;chr11:31832658..31832681,-!p1@PAX6!1.45!27.25!PAX6;;chr1:201979703..201979721,+!p2@ELF3!1.45!27.05!ELF3;;chr10:104155659..104155676,+!p4@NFKB2!1.44!33.10!NFKB2;;chr19:36204309..36204335,+!p1@ZBTB32!1.43!26.21!ZBTB32;;chr3:141087393..141087426,+!p3@ZBTB38!1.42!97.01!ZBTB38;;chr2:231090433..231090469,+!p1@SP140!1.42!25.06!SP140;;chr18:55102628..55102646,+!p2@ONECUT2!1.41!24.96!ONECUT2;;chr1:212873061..212873080,-!p4@BATF3!1.41!24.43!BATF3;;chr3:111314230..111314241,-!p2@ZBED2!1.37!22.35!ZBED2;;chr3:181429741..181429767,+!p2@SOX2!1.36!22.14!SOX2;;chr17:40440359..40440386,+!p4@STAT5A!1.35!21.51!STAT5A;;chr6:91006518..91006570,-!p1@BACH2!1.34!47.62!BACH2;;chr3:181429704..181429722,+!p1@SOX2!1.34!20.88!SOX2;;chr2:45168834..45168847,+!p2@SIX3!1.33!20.57!SIX3;;chr17:8027418..8027432,-!p1@HES7!1.33!20.36!HES7;;chr1:212873200..212873230,-!p5@BATF3!1.32!19.74!BATF3;;chr3:141087339..141087387,+!p2@ZBTB38!1.31!195.06!ZBTB38;;chr8:128747846..128747860,+!p15@MYC!1.31!19.53!MYC;;chr1:25291475..25291511,-!p2@RUNX3!1.31!19.21!RUNX3;;chr1:212873267..212873332,-!p1@BATF3!1.30!25.48!BATF3;;chr7:50344251..50344288,+!p3@IKZF1!1.28!18.06!IKZF1;;chr4:26322267..26322334,+!p3@RBPJ!1.26!40.93!RBPJ;;chr6:36355360..36355392,-!p4@ETV7!1.25!16.60!ETV7;;chr19:47523058..47523114,+!p1@NPAS1!1.25!16.60!NPAS1;;chr4:144435112..144435176,+!p3@SMARCA5!1.24!33.94!SMARCA5;;chr10:64576035..64576046,-!p2@EGR2!1.24!16.29!EGR2;;chr19:45252008..45252024,+!p2@BCL3!1.21!50.33!BCL3;;chr6:106546808..106546833,+!p3@PRDM1!1.21!19.32!PRDM1;;chr17:46703436..46703460,-!p7@HOXB9!1.21!15.04!HOXB9;;chr3:141747950..141748004,-!p7@TFDP2!1.19!14.41!TFDP2;;chr9:2015335..2015370,+!p1@SMARCA2!1.18!171.04!SMARCA2;;chr13:28494109..28494122,+!p2@PDX1!1.18!14.31!PDX1;;chr3:141747459..141747475,-!p1@TFDP2!1.17!113.19!TFDP2;;chr3:101546827..101546847,+!p2@NFKBIZ!1.17!19.53!NFKBIZ;;chr2:231090344..231090361,-!p3@SP110!1.17!13.78!SP110;;chr17:40440446..40440464,+!p5@STAT5A!1.17!13.68!STAT5A;;chr6:135502472..135502489,+!p3@MYB!1.15!13.26!MYB;;chr1:158978768..158978800,+!p8@IFI16!1.15!13.26!IFI16;;chr11:61520075..61520136,+!p1@C11orf9!1.13!26.21!C11orf9;;chr1:25256756..25256774,-!p1@RUNX3!1.13!23.39!RUNX3;;chr13:28494180..28494196,+!p3@PDX1!1.13!12.43!PDX1;;chr21:47063625..47063658,+!p1@PCBP3!1.12!53.46!PCBP3;;chr12:103352277..103352324,+!p2@ASCL1!1.12!12.32!ASCL1;;chr1:201979743..201979762,+!p1@ELF3!1.11!12.01!ELF3;;chr20:51588873..51588953,+!p1@TSHZ2!1.10!15.35!TSHZ2;;chr4:26323870..26323885,+!p13@RBPJ!1.10!11.70!RBPJ;;chr6:137815425..137815444,-!p2@OLIG3!1.10!11.49!OLIG3;;chr5:142780189..142780223,-!p6@NR3C1!1.09!11.38!NR3C1;;chr19:19976683..19976709,+!p1@ZNF253!1.08!48.56!ZNF253;;chr19:12203100..12203132,+!p1@ZNF788!1.08!22.56!ZNF788;;chr11:31832610..31832639,-!p5@PAX6!1.08!10.96!PAX6;;chr6:144385698..144385742,-!p2@PLAGL1!1.07!13.05!PLAGL1;;chr12:48276620..48276640,-!p7@VDR!1.07!10.76!VDR;;chr6:42419649..42419673,-!p3@TRERF1!1.06!18.17!TRERF1;;chr5:1882184..1882203,-!p4@IRX4!1.05!10.23!IRX4;;chr2:176969179..176969226,+!p2@HOXD11!1.05!10.23!HOXD11;;chr10:104154246..104154347,+!p3@NFKB2!1.04!61.50!NFKB2;;chr2:45168959..45168990,+!p6@SIX3!1.04!10.02!SIX3;;chr2:45168997..45169020,+!p4@SIX3!1.04!9.92!SIX3;;chr3:189348969..189349018,+!p4@TP63!1.04!9.92!TP63;;chr12:54393880..54393962,+!p1@HOXC9!1.03!9.82!HOXC9;;chr13:79177703..79177729,-!p2@POU4F1!1.03!9.71!POU4F1;;chr5:1882170..1882182,-!p3@IRX4!1.03!9.71!IRX4;;chr7:50348268..50348366,+!p4@IKZF1!1.03!9.71!IKZF1;;chr12:52445218..52445237,+!p1@NR4A1!1.01!117.47!NR4A1;;chr2:61108878..61108891,+!p5@REL!1.01!9.29!REL;;chr5:142780237..142780261,-!p7@NR3C1!1.01!9.19!NR3C1;;chr2:145274900..145274934,-!p4@ZEB2!1.00!56.07!ZEB2;;chr6:106534192..106534224,+!p1@PRDM1!1.00!25.90!PRDM1;;chr12:48298765..48298783,-!p2@VDR!1.00!19.21!VDR;;chr20:6748325..6748352,+!p1@BMP2!1.00!13.26!BMP2;;chr3:157824202..157824211,-!p3@SHOX2!1.00!8.98!SHOX2;;chr2:97202480..97202499,+!p1@ARID5A!0.99!90.64!ARID5A;;chr9:117150254..117150271,-!p1@AKNA!0.99!24.23!AKNA;;chr6:36355431..36355466,-!p1@ETV7!0.98!8.56!ETV7;;chr14:75988851..75988862,+!p3@BATF!0.98!8.56!BATF;;chr9:1050331..1050363,+!p1@DMRT2!0.98!8.46!DMRT2;;chr3:189349132..189349142,+!p7@TP63!0.98!8.46!TP63;;chr4:26324474..26324501,+!p16@RBPJ!0.98!8.46!RBPJ;;chr18:77155922..77155939,+!p1@NFATC1!0.97!23.18!NFATC1;;chr2:145274981..145274994,-!p9@ZEB2!0.97!12.43!ZEB2;;chr5:1883024..1883046,-!p5@IRX4!0.97!8.35!IRX4;;chr8:11561453..11561466,+!p2@GATA4!0.97!8.25!GATA4;;chr14:35873947..35873965,-!p1@NFKBIA!0.96!535.79!NFKBIA;;chr6:31126291..31126399,+!p1@TCF19!0.96!79.15!TCF19;;chr11:6947720..6947812,+!p1@ZNF215!0.96!10.76!ZNF215;;chr10:104155480..104155534,+!p2@NFKB2!0.95!53.15!NFKB2;;chr6:1610293..1610310,+!p1@FOXC1!0.95!13.37!FOXC1;;chr1:27023752..27023799,+!p4@ARID1A!0.95!10.55!ARID1A;;chr12:24715376..24715432,-!p1@SOX5!0.95!10.02!SOX5;;chr7:27195867..27195893,-!p3@HOXA7!0.95!7.83!HOXA7;;chr10:124895548..124895570,+!p2@HMX3!0.94!7.73!HMX3;;chr12:56415246..56415286,+!p2@IKZF4!0.94!7.73!IKZF4;;chr2:220094657..220094664,+!p3@ANKZF1!0.94!7.62!ANKZF1;;chr8:60031619..60031676,-!p1@TOX!0.93!16.50!TOX;;chr6:1389789..1389821,+!p1@FOXF2!0.93!10.55!FOXF2;;chr10:104155680..104155687,+!p6@NFKB2!0.93!7.52!NFKB2;;chr16:31885093..31885165,+!p1@ZNF267!0.92!117.58!ZNF267;;chr6:106534230..106534254,+!p2@PRDM1!0.92!19.00!PRDM1;;chr4:185395590..185395627,-!p3@IRF2!0.92!9.08!IRF2;;chr11:31832581..31832601,-!p7@PAX6!0.92!7.31!PAX6;;chr6:106546834..106546850,+!p4@PRDM1!0.92!7.31!PRDM1;;chr19:19976714..19976729,+!p3@ZNF253!0.91!13.78!ZNF253;;chr4:57522166..57522260,-!p2@HOPX!0.91!8.25!HOPX;;chrY:2803415..2803468,+!p1@ZFY!0.91!7.21!ZFY;;chr5:158526917..158526932,-!p1@EBF1!0.90!17.75!EBF1;;chr4:26322373..26322393,+!p4@RBPJ!0.90!10.34!RBPJ;;chr12:19593515..19593573,+!p9@AEBP2!0.90!9.50!AEBP2;;chr2:200322654..200322707,-!p2@SATB2!0.89!10.13!SATB2;;chr2:61108808..61108821,+!p3@REL!0.89!8.77!REL;;chr17:42287802..42287806,-!p25@UBTF!0.89!6.79!UBTF;;chr17:46703528..46703549,-!p5@HOXB9!0.89!6.68!HOXB9;;chr7:148581360..148581425,-!p1@EZH2!0.87!33.31!EZH2;;chr12:11802932..11802949,+!p3@ETV6!0.87!11.38!ETV6;;chr1:41827095..41827155,+!p1@FOXO6!0.87!8.88!FOXO6;;chr17:70117153..70117174,+!p1@SOX9!0.86!67.87!SOX9;;chr7:128577972..128578047,+!p1@IRF5!0.86!10.13!IRF5;;chr3:141747441..141747452,-!p4@TFDP2!0.86!8.98!TFDP2;;chr10:8096631..8096660,+!p1@GATA3!0.86!7.62!GATA3;;chr9:2015306..2015323,+!p3@SMARCA2!0.85!16.60!SMARCA2;;chr3:141087562..141087594,+!p12@ZBTB38!0.85!6.16!ZBTB38;;chr2:61108771..61108789,+!p4@REL!0.84!9.19!REL;;chrX:66763815..66763854,+!p2@AR!0.84!8.04!AR;;chr20:20348740..20348757,+!p1@INSM1!0.84!5.85!INSM1;;chr11:31832549..31832562,-!p10@PAX6!0.83!5.74!PAX6;;chr8:60031682..60031710,-!p2@TOX!0.82!9.50!TOX;;chr1:247171316..247171336,-!p3@ZNF695!0.82!8.56!ZNF695;;chr2:192015701..192015743,-!p1@STAT4!0.82!7.94!STAT4;;chr1:92951607..92951661,-!p1@GFI1!0.82!5.64!GFI1;;chr19:57791917..57791937,+!p4@ZNF460!0.81!10.02!ZNF460;;chr10:8096772..8096787,+!p2@GATA3!0.81!6.47!GATA3;;chr1:212782094..212782109,+!p1@ATF3!0.80!158.62!ATF3;;chr2:61108695..61108753,+!p1@REL!0.80!39.89!REL;;chr12:48298785..48298828,-!p1@VDR!0.80!30.60!VDR;;chr5:50679228..50679288,+!p1@ISL1!0.79!5.22!ISL1;;chr11:129245763..129245768,+!p4@BARX2!0.79!5.12!BARX2;;chr2:145274998..145275012,-!p13@ZEB2!0.78!5.74!ZEB2;;chr19:57791947..57791956,+!p7@ZNF460!0.78!5.01!ZNF460;;chr17:40441330..40441344,+!p9@STAT5A!0.78!5.01!STAT5A;;chr6:20402102..20402152,+!p1@E2F3!0.77!21.62!E2F3;;chr17:41277372..41277418,-!p1@BRCA1!0.77!19.32!BRCA1;;chr4:185395633..185395651,-!p2@IRF2!0.77!8.14!IRF2;;chr11:19262421..19262455,-!p3@E2F8!0.77!4.91!E2F8;;chr6:36355397..36355406,-!p5@ETV7!0.77!4.91!ETV7;;chr1:3569101..3569115,+!p2@TP73!0.77!4.91!TP73;;chr11:47236584..47236679,+!p1@DDB2!0.76!57.22!DDB2;;chr1:117602932..117602973,+!p1@TTF2!0.76!19.21!TTF2;;chr14:35872453..35872485,-!p2@NFKBIA!0.76!12.64!NFKBIA;;chr11:34645791..34645836,+!p3@EHF!0.76!4.80!EHF;;chr2:45169684..45169715,+!p9@SIX3!0.76!4.80!SIX3;;chr1:3569135..3569150,+!p3@TP73!0.76!4.80!TP73;;chr6:91006296..91006308,-!p7@BACH2!0.76!4.80!BACH2;;chr19:12902289..12902307,+!p1@JUNB!0.75!1174.02!JUNB;;chr4:4291837..4291859,-!p2@LYAR!0.75!16.50!LYAR;;chr19:21203481..21203504,+!p2@ZNF430!0.75!11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@@ Line 35: / Line 40: @@
 |fonse_treatment_closure=FF:0000343,FF:10449-106F8
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@@ Line 42: / Line 59: @@
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@@ Line 77: / Line 98: @@
 |sample_tissue=blood
 |top_motifs=HOX{A6,A7,B6,B7}:2.17500490704;NFKB1_REL_RELA:1.75722889879;HOXA9_MEIS1:1.73859425259;TLX2:1.66188955238;NFY{A,B,C}:1.65174271183;E2F1..5:1.61760967583;NKX2-1,4:1.55847417406;YY1:1.53549197303;FOXP3:1.51273776646;GFI1:1.40660915588;CREB1:1.39908270701;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.34415695608;MYB:1.18692252933;BREu{core}:1.10473257318;FOXP1:1.09784981638;RBPJ:1.08413685182;STAT5{A,B}:1.039092766;CRX:1.03256789129;TEF:1.0173265779;POU3F1..4:1.00588676633;TFDP1:1.00417507672;NRF1:0.999671788962;STAT2,4,6:0.973473373464;ELF1,2,4:0.954398568421;ATF4:0.910450062872;RORA:0.890784400006;AIRE:0.879728986328;NANOG:0.864577982541;HES1:0.861160162996;PAX1,9:0.85272876557;HSF1,2:0.826204376863;PAX4:0.784094622883;MYOD1:0.781508578714;ELK1,4_GABP{A,B1}:0.757781891659;AHR_ARNT_ARNT2:0.723766243858;FOXM1:0.698467508534;PITX1..3:0.64908530185;ZFP161:0.639058309769;DBP:0.636099746669;PDX1:0.62857255226;RFX2..5_RFXANK_RFXAP:0.622755156545;ONECUT1,2:0.612541698687;PAX8:0.585281038785;POU1F1:0.568186098749;LEF1_TCF7_TCF7L1,2:0.561913578206;PBX1:0.549015292249;CDX1,2,4:0.544849053247;ATF5_CREB3:0.528452358341;RUNX1..3:0.525834838833;TGIF1:0.51404081457;ZNF143:0.499955805058;POU2F1..3:0.489661220238;ADNP_IRX_SIX_ZHX:0.422140863534;EVI1:0.412255393827;SOX{8,9,10}:0.366510252458;CUX2:0.360683634576;ZBTB16:0.351298967542;ESRRA:0.324409191889;ATF6:0.280995817624;IRF1,2:0.275035021341;SOX17:0.219608154435;SPI1:0.211298930884;BPTF:0.187839572636;STAT1,3:0.161847477692;NKX6-1,2:0.107857781028;GATA6:0.0960622871553;FOXQ1:0.0876855875899;RXR{A,B,G}:0.0803411134652;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0784379394758;HIF1A:0.0768586067239;NFE2L1:0.0719107423636;SOX5:0.0603886660127;JUN:0.0566832573368;POU5F1:0.0503757431993;TP53:0.031319856039;FOXD3:0.0181915691764;bHLH_family:0.00948450927831;FOXN1:0.00387912301222;EGR1..3:-0.00107564894246;GCM1,2:-0.0104707451129;PAX6:-0.0233924050915;HNF4A_NR2F1,2:-0.053649102927;HIC1:-0.0616237941786;PRRX1,2:-0.0740406304316;FOX{F1,F2,J1}:-0.0837920550572;MTE{core}:-0.0969368238812;MYFfamily:-0.102973535868;RFX1:-0.106494899789;NR1H4:-0.116286713203;PAX3,7:-0.116506517578;RREB1:-0.157226689891;ETS1,2:-0.176095638688;SPIB:-0.185062508695;ESR1:-0.191356551952;HNF1A:-0.213902947789;IKZF2:-0.214489139826;CEBPA,B_DDIT3:-0.218704454612;HOX{A4,D4}:-0.235787708205;NKX3-2:-0.248846912782;FOS_FOS{B,L1}_JUN{B,D}:-0.25522253594;SOX2:-0.263965414907;TOPORS:-0.278071731767;SNAI1..3:-0.285878020499;FOSL2:-0.288028931426;ATF2:-0.29213559811;NKX3-1:-0.297619969102;REST:-0.300117840324;XBP1:-0.309741768586;LHX3,4:-0.312892449357;NFE2:-0.317297661863;NR6A1:-0.342653635746;ZIC1..3:-0.360482990077;POU6F1:-0.372543407372;NR5A1,2:-0.382673018794;ZNF148:-0.387585752381;MED-1{core}:-0.399380426999;FOX{I1,J2}:-0.404641808086;TFAP2{A,C}:-0.414977851055;SRF:-0.421723911172;FOXA2:-0.427071637495;MEF2{A,B,C,D}:-0.458879701647;BACH2:-0.459459998907;NFATC1..3:-0.460955983722;ZEB1:-0.462195648462;PATZ1:-0.4627581089;PAX5:-0.464687720053;IRF7:-0.468629422725;TFAP2B:-0.471713520625;VSX1,2:-0.486875176989;LMO2:-0.50036419845;MAFB:-0.521885742876;SREBF1,2:-0.523655620156;NKX2-3_NKX2-5:-0.524412488458;NFE2L2:-0.526018381506;OCT4_SOX2{dimer}:-0.536169977495;DMAP1_NCOR{1,2}_SMARC:-0.540879058467;GFI1B:-0.549550724479;ZNF384:-0.565290336534;HLF:-0.56701488644;PAX2:-0.573349244733;UFEwm:-0.579722499914;ALX1:-0.599579813746;AR:-0.610141427243;MYBL2:-0.612313419861;ZNF423:-0.618213782207;NFIL3:-0.622354358033;GATA4:-0.63106161472;PRDM1:-0.776826997286;RXRA_VDR{dimer}:-0.789441494889;HBP1_HMGB_SSRP1_UBTF:-0.789561931622;GZF1:-0.801393363311;EP300:-0.803882742719;XCPE1{core}:-0.804264933807;HAND1,2:-0.831446134598;KLF4:-0.832496773144;EBF1:-0.8415715224;CDC5L:-0.861849021166;MZF1:-0.865441610875;HOX{A5,B5}:-0.896513196913;TBP:-0.901638447279;ARID5B:-0.917110199651;TFAP4:-0.918819900785;IKZF1:-0.945080424815;NHLH1,2:-0.985952797974;HMX1:-1.03605655667;NANOG{mouse}:-1.03667819978;NFIX:-1.04539938631;EN1,2:-1.05176686777;TBX4,5:-1.0556386556;MTF1:-1.06948549913;TEAD1:-1.1748900742;NKX2-2,8:-1.17957216045;GTF2I:-1.19047066291;ZBTB6:-1.20738613289;ZNF238:-1.30422701485;GTF2A1,2:-1.30524148121;FOX{D1,D2}:-1.31132944358;MAZ:-1.33813606117;HMGA1,2:-1.37677413093;NR3C1:-1.4043739598;FOXL1:-1.42841907281;SP1:-1.4880878766;PPARG:-1.50954706162;TAL1_TCF{3,4,12}:-1.51318170894;FOXO1,3,4:-1.51451095683;TFCP2:-1.5410980968;TLX1..3_NFIC{dimer}:-1.56001698549;SMAD1..7,9:-1.60675617142;GLI1..3:-1.72294100913;ALX4:-1.74812316663;SPZ1:-2.3285811708;T:-2.48138533426
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10449-106F8;search_select_hide=table117:FF:10449-106F8
 }}

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FF:10449-106F8: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:03, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0