FF:10454-106G4: Difference between revisions

Latest revision as of 14:03, 3 June 2020

Name:	chronic myelogenous leukemia cell line:K562
Species:	Human (Homo sapiens)
Library ID:	CNhs11250
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	female
age	53
cell type	granulocyte
cell line	K562
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004875

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11250		CAGE		DRX007858		DRR008730

Accession ID Hg19

Library id		BAM		CTSS
CNhs11250		DRZ000155		DRZ001540

Accession ID Hg38

Library id		BAM		CTSS
CNhs11250		DRZ011505		DRZ012890

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

HumanCAGEScan Download raw sequence, BAM & CTSS

Library id		3prime-FASTQ		5prime-FASTQ		BAM		CTSS
NCig10060		download		download		download		download

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0646
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.684
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0.943
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.00612
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.211
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0629
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.157
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.578
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.00205
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.567
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	-0.0031
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0.714
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11250

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.852
MA0003.1	MA0003.1	0.476
MA0004.1	MA0004.1	0.164
MA0006.1	MA0006.1	0.254
MA0007.1	MA0007.1	0.393
MA0009.1	MA0009.1	0.327
MA0014.1	MA0014.1	0.426
MA0017.1	MA0017.1	0.395
MA0018.2	MA0018.2	0.295
MA0019.1	MA0019.1	0.352
MA0024.1	MA0024.1	4.81614e-6
MA0025.1	MA0025.1	0.117
MA0027.1	MA0027.1	0.678
MA0028.1	MA0028.1	1.55444e-4
MA0029.1	MA0029.1	0.0292
MA0030.1	MA0030.1	0.315
MA0031.1	MA0031.1	0.628
MA0035.2	MA0035.2	2.48374e-21
MA0038.1	MA0038.1	0.639
MA0039.2	MA0039.2	0.686
MA0040.1	MA0040.1	0.147
MA0041.1	MA0041.1	0.152
MA0042.1	MA0042.1	0.324
MA0043.1	MA0043.1	0.0934
MA0046.1	MA0046.1	0.142
MA0047.2	MA0047.2	0.863
MA0048.1	MA0048.1	0.209
MA0050.1	MA0050.1	1.85214e-6
MA0051.1	MA0051.1	6.41325e-6
MA0052.1	MA0052.1	0.011
MA0055.1	MA0055.1	0.00407
MA0057.1	MA0057.1	0.752
MA0058.1	MA0058.1	0.0708
MA0059.1	MA0059.1	5.89754e-4
MA0060.1	MA0060.1	1.15019e-4
MA0061.1	MA0061.1	0.642
MA0062.2	MA0062.2	1.67594e-4
MA0065.2	MA0065.2	0.0405
MA0066.1	MA0066.1	0.367
MA0067.1	MA0067.1	0.776
MA0068.1	MA0068.1	0.0812
MA0069.1	MA0069.1	0.508
MA0070.1	MA0070.1	0.981
MA0071.1	MA0071.1	0.149
MA0072.1	MA0072.1	0.0393
MA0073.1	MA0073.1	0.938
MA0074.1	MA0074.1	0.254
MA0076.1	MA0076.1	1.39276e-5
MA0077.1	MA0077.1	0.283
MA0078.1	MA0078.1	0.486
MA0079.2	MA0079.2	0.128
MA0080.2	MA0080.2	5.01724e-4
MA0081.1	MA0081.1	0.863
MA0083.1	MA0083.1	0.149
MA0084.1	MA0084.1	0.37
MA0087.1	MA0087.1	0.0656
MA0088.1	MA0088.1	1.7917e-4
MA0090.1	MA0090.1	0.0155
MA0091.1	MA0091.1	0.812
MA0092.1	MA0092.1	0.728
MA0093.1	MA0093.1	0.141
MA0099.2	MA0099.2	0.464
MA0100.1	MA0100.1	0.0723
MA0101.1	MA0101.1	0.244
MA0102.2	MA0102.2	0.0129
MA0103.1	MA0103.1	0.38
MA0104.2	MA0104.2	1.52177e-4
MA0105.1	MA0105.1	0.0266
MA0106.1	MA0106.1	0.449
MA0107.1	MA0107.1	0.0164
MA0108.2	MA0108.2	6.57215e-5
MA0111.1	MA0111.1	0.106
MA0112.2	MA0112.2	0.0542
MA0113.1	MA0113.1	0.72
MA0114.1	MA0114.1	0.0382
MA0115.1	MA0115.1	0.0676
MA0116.1	MA0116.1	0.00124
MA0117.1	MA0117.1	0.746
MA0119.1	MA0119.1	0.65
MA0122.1	MA0122.1	0.765
MA0124.1	MA0124.1	0.907
MA0125.1	MA0125.1	0.609
MA0131.1	MA0131.1	0.663
MA0135.1	MA0135.1	0.0026
MA0136.1	MA0136.1	0.243
MA0137.2	MA0137.2	0.893
MA0138.2	MA0138.2	0.889
MA0139.1	MA0139.1	0.138
MA0140.1	MA0140.1	2.04296e-31
MA0141.1	MA0141.1	0.0152
MA0142.1	MA0142.1	0.00754
MA0143.1	MA0143.1	0.541
MA0144.1	MA0144.1	0.79
MA0145.1	MA0145.1	0.694
MA0146.1	MA0146.1	0.217
MA0147.1	MA0147.1	1.12605e-5
MA0148.1	MA0148.1	0.643
MA0149.1	MA0149.1	0.00469
MA0150.1	MA0150.1	0.178
MA0152.1	MA0152.1	0.711
MA0153.1	MA0153.1	0.0118
MA0154.1	MA0154.1	0.258
MA0155.1	MA0155.1	0.494
MA0156.1	MA0156.1	0.71
MA0157.1	MA0157.1	0.211
MA0159.1	MA0159.1	0.251
MA0160.1	MA0160.1	0.0715
MA0162.1	MA0162.1	0.921
MA0163.1	MA0163.1	6.73292e-10
MA0164.1	MA0164.1	0.915
MA0258.1	MA0258.1	0.137
MA0259.1	MA0259.1	0.0375

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11250

Novel motif	Logo	P-value
1	1	0.00927
10	10	0.0163
100	100	0.126
101	101	0.273
102	102	0.686
103	103	0.575
104	104	0.856
105	105	0.958
106	106	0.484
107	107	0.411
108	108	0.904
109	109	0.0364
11	11	0.0975
110	110	0.131
111	111	0.135
112	112	0.627
113	113	0.546
114	114	0.0173
115	115	0.219
116	116	0.242
117	117	0.0195
118	118	0.3
119	119	0.28
12	12	0.888
120	120	0.76
121	121	0.658
122	122	0.335
123	123	0.0677
124	124	0.171
125	125	0.285
126	126	0.327
127	127	0.971
128	128	0.424
129	129	0.761
13	13	0.0077
130	130	0.183
131	131	0.485
132	132	0.331
133	133	0.152
134	134	0.811
135	135	0.281
136	136	0.341
137	137	0.683
138	138	0.648
139	139	0.152
14	14	0.76
140	140	0.0338
141	141	0.0157
142	142	0.64
143	143	0.901
144	144	0.574
145	145	0.475
146	146	0.821
147	147	0.36
148	148	0.175
149	149	0.244
15	15	0.235
150	150	0.626
151	151	0.782
152	152	0.157
153	153	0.577
154	154	0.956
155	155	0.331
156	156	0.608
157	157	0.393
158	158	0.751
159	159	0.123
16	16	0.648
160	160	0.492
161	161	0.174
162	162	0.771
163	163	0.374
164	164	0.494
165	165	0.662
166	166	0.143
167	167	0.0933
168	168	0.619
169	169	0.527
17	17	0.536
18	18	0.425
19	19	0.805
2	2	0.207
20	20	0.137
21	21	0.241
22	22	0.812
23	23	0.111
24	24	0.279
25	25	0.34
26	26	0.0326
27	27	0.481
28	28	0.526
29	29	0.0275
3	3	0.187
30	30	0.0726
31	31	0.74
32	32	0.197
33	33	0.0785
34	34	0.424
35	35	0.166
36	36	0.0165
37	37	0.218
38	38	0.389
39	39	0.642
4	4	0.166
40	40	0.194
41	41	0.778
42	42	0.201
43	43	0.214
44	44	0.543
45	45	0.601
46	46	0.13
47	47	0.0201
48	48	0.104
49	49	0.0176
5	5	0.264
50	50	0.953
51	51	0.861
52	52	0.266
53	53	0.483
54	54	0.91
55	55	0.455
56	56	0.868
57	57	0.0606
58	58	0.379
59	59	0.796
6	6	0.324
60	60	0.963
61	61	0.143
62	62	0.192
63	63	0.901
64	64	0.228
65	65	0.721
66	66	1.45779e-4
67	67	0.851
68	68	0.233
69	69	0.71
7	7	0.0749
70	70	0.51
71	71	0.0135
72	72	0.478
73	73	0.958
74	74	0.832
75	75	0.00456
76	76	0.317
77	77	0.681
78	78	0.0045
79	79	0.0811
8	8	0.128
80	80	0.147
81	81	0.705
82	82	0.4
83	83	0.653
84	84	0.721
85	85	0.641
86	86	0.682
87	87	0.373
88	88	0.842
89	89	0.816
9	9	0.616
90	90	0.0199
91	91	0.27
92	92	0.737
93	93	0.645
94	94	0.359
95	95	0.173
96	96	0.213
97	97	0.783
98	98	0.178
99	99	0.583

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11250

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100664 K-562 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
1036 (chronic leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0102580 (chronic myeloid leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0100740 (myeloid leukemia cell line sample)
0100664 (K-562 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007753
+|DRA_sample_Accession=CAGE@SAMD00004875
-|accession_numbers=CAGE;DRX007858;DRR008730;DRZ000155;DRZ001540
+|HumanCAGEScanFiles=NCig10060;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562.NCig10060.10454-106G4.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562.NCig10060.10454-106G4.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562.NCig10060.10454-106G4.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562.NCig10060.10454-106G4.hg19.GCTATA.pairs.bed.gz
+|accession_numbers=CAGE;DRX007858;DRR008730;DRZ000155;DRZ001540;DRZ011505;DRZ012890
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
@@ Line 9: / Line 10: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chrX:48644984..48645005,+!p1@GATA1!2.28!188.24!GATA1;;chr17:40441354..40441410,+!p2@STAT5A!1.89!77.42!STAT5A;;chr19:12998003..12998021,-!p1@KLF1!1.87!73.24!KLF1;;chr9:20382446..20382493,-!p4@MLLT3!1.84!68.69!MLLT3;;chr3:128212033..128212051,-!p1@GATA2!1.82!65.65!GATA2;;chr20:56100179..56100208,-!p1@CTCFL!1.74!53.70!CTCFL;;chr12:54694807..54694832,-!p3@NFE2!1.73!52.94!NFE2;;chr12:54694758..54694805,-!p1@NFE2!1.72!61.86!NFE2;;chr9:135854091..135854159,+!p1@GFI1B!1.60!38.90!GFI1B;;chr12:54694653..54694672,-!p2@NFE2!1.57!36.24!NFE2;;chr6:135502501..135502546,+!p1@MYB!1.54!39.85!MYB;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!1.54!33.78!SOHLH2;;chr17:46703687..46703740,-!p1@HOXB9!1.53!32.64!HOXB9;;chr5:134369905..134369972,-!p1@PITX1!1.52!48.58!PITX1;;chr8:37963466..37963506,+!p3@ASH2L!1.50!37.95!ASH2L;;chr11:120107344..120107351,+!p1@POU2F3!1.43!30.93!POU2F3;;chr12:54689532..54689551,-!p4@NFE2!1.33!20.49!NFE2;;chr19:13213511..13213545,-!p2@LYL1!1.32!21.63!LYL1;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!1.27!164.90!ZNF595;;chrX:48644976..48644983,+!p2@GATA1!1.25!16.70!GATA1;;chr20:31350184..31350200,+!p1@DNMT3B!1.23!32.83!DNMT3B;;chr3:128206762..128206781,-!p2@GATA2!1.21!92.98!GATA2;;chrX:48645010..48645015,+!p3@GATA1!1.19!14.42!GATA1;;chr7:50343634..50343717,+!p2@IKZF1!1.15!13.28!IKZF1;;chr17:46622229..46622257,-!p6@HOXB2!1.12!14.23!HOXB2;;chr1:47697881..47697910,-!p4@TAL1!1.12!12.14!TAL1;;chr6:135502408..135502459,+!p2@MYB!1.11!13.85!MYB;;chr17:46622205..46622218,-!p3@HOXB2!1.09!13.09!HOXB2;;chr5:134369879..134369898,-!p2@PITX1!1.09!11.39!PITX1;;chr2:239148671..239148686,-!p1@HES6!1.04!37.38!HES6;;chr20:42295713..42295738,+!p2@MYBL2!1.03!57.69!MYBL2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.03!9.68!ZBED1;;chr11:101000537..101000553,-!p1@PGR!1.02!9.49!PGR;;chr2:145277640..145277771,-!p1@ZEB2!1.01!126.00!ZEB2;;chr2:200322654..200322707,-!p2@SATB2!1.01!13.66!SATB2;;chr6:85473156..85473210,-!p2@TBX18!1.01!11.39!TBX18;;chr20:50159198..50159299,-!p1@NFATC2!1.00!13.28!NFATC2;;chr1:47695003..47695042,-!p2@TAL1!1.00!8.92!TAL1;;chr17:40440177..40440190,+!p6@STAT5A!1.00!8.92!STAT5A;;chr17:40441330..40441344,+!p9@STAT5A!0.99!8.73!STAT5A;;chr8:106330656..106330684,+!p1@ZFPM2!0.97!22.39!ZFPM2;;chr12:54689552..54689574,-!p6@NFE2!0.97!8.35!NFE2;;chr9:135854074..135854089,+!p2@GFI1B!0.95!7.97!GFI1B;;chr19:13213555..13213568,-!p5@LYL1!0.94!7.78!LYL1;;chr15:76629123..76629151,+!p1@ISL2!0.92!8.16!ISL2;;chr17:40469520..40469532,-!p12@STAT3!0.91!7.21!STAT3;;chr10:124895472..124895508,+!p1@HMX3!0.91!7.21!HMX3;;chr2:200323414..200323455,-!p1@SATB2!0.90!15.37!SATB2;;chr19:12203100..12203132,+!p1@ZNF788!0.90!14.61!ZNF788;;chr8:106330696..106330719,+!p2@ZFPM2!0.90!8.92!ZFPM2;;chr5:137804484..137804498,+!p2@EGR1!0.88!27.70!EGR1;;chr10:94449703..94449718,+!p1@HHEX!0.88!26.76!HHEX;;chr1:247171316..247171336,-!p3@ZNF695!0.88!10.06!ZNF695;;chr12:56415246..56415286,+!p2@IKZF4!0.88!6.64!IKZF4;;chr8:145669791..145669834,-!p1@TONSL!0.87!19.35!TONSL;;chr10:35484053..35484076,+!p1@CREM!0.87!16.70!CREM;;chr10:70320074..70320106,+!p1@TET1!0.87!13.47!TET1;;chr13:79177703..79177729,-!p2@POU4F1!0.87!6.45!POU4F1;;chr5:150284532..150284549,-!p1@ZNF300!0.86!13.47!ZNF300;;chr11:6947720..6947812,+!p1@ZNF215!0.86!8.35!ZNF215;;chr11:32457075..32457095,-!p1@WT1!0.86!6.26!WT1;;chr1:247171347..247171366,-!p2@ZNF695!0.85!11.57!ZNF695;;chr7:148581327..148581347,-!p2@EZH2!0.84!21.25!EZH2;;chr22:22863052..22863133,-!p1@ZNF280B!0.83!15.75!ZNF280B;;chr17:79881332..79881348,-!p3@MAFG!0.83!8.73!MAFG;;chr12:54785074..54785122,-!p2@ZNF385A!0.81!8.73!ZNF385A;;chr9:135854058..135854072,+!p3@GFI1B!0.81!5.50!GFI1B;;chr5:138609782..138609826,+!p5@MATR3!0.80!37.19!MATR3;;chr11:19262421..19262455,-!p3@E2F8!0.80!5.31!E2F8;;chr10:60145155..60145206,+!p1@TFAM!0.79!242.32!TFAM;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.79!25.24!TAL1;;chr6:20402102..20402152,+!p1@E2F3!0.79!22.96!E2F3;;chr4:4291837..4291859,-!p2@LYAR!0.79!18.03!LYAR;;chr6:20402070..20402082,+!p5@E2F3!0.79!6.07!E2F3;;chr6:135502472..135502489,+!p3@MYB!0.79!5.12!MYB;;chr17:40469457..40469494,-!p14@STAT3!0.79!5.12!STAT3;;chr1:247242048..247242098,-!p1@ZNF670,p1@ZNF695!0.78!19.73!ZNF670;;chr17:41277372..41277418,-!p1@BRCA1!0.78!19.54!BRCA1;;chr11:61520075..61520136,+!p1@C11orf9!0.78!11.20!C11orf9;;chr4:4291861..4291913,-!p1@LYAR!0.77!123.34!LYAR;;chr7:64363638..64363667,+!p1@ZNF273!0.77!26.95!ZNF273;;chr1:203764633..203764674,+!p2@ZC3H11A!0.77!8.16!ZC3H11A;;chr11:101000445..101000465,-!p5@PGR!0.77!4.93!PGR;;chr6:134274354..134274371,+!p1@TBPL1!0.76!137.95!TBPL1;;chr17:42295777..42295816,-!p7@UBTF!0.76!5.88!UBTF;;chr3:141747459..141747475,-!p1@TFDP2!0.75!42.69!TFDP2;;chr19:35417798..35417842,+!p1@ZNF30!0.75!8.16!ZNF30;;chr6:34204642..34204664,+!p2@HMGA1!0.74!678.94!HMGA1;;chr15:41952591..41952672,+!p1@MGA!0.74!65.84!MGA;;chr5:88178983..88179012,-!p1@MEF2C!0.74!38.33!MEF2C;;chr19:22235279..22235301,+!p1@ZNF257!0.74!8.92!ZNF257;;chr2:200322229..200322251,-!p3@SATB2!0.74!4.55!SATB2;;chr10:124895548..124895570,+!p2@HMX3!0.74!4.55!HMX3;;chr20:56100155..56100163,-!p2@CTCFL!0.74!4.55!CTCFL;;chr3:168864315..168864339,-!p2@MECOM!0.72!7.40!MECOM;;chr6:56954867..56954882,+!p2@ZNF451!0.71!13.47!ZNF451;;chr1:61548069..61548102,+!p3@NFIA!0.71!11.01!NFIA;;chr5:137804405..137804444,+!p3@EGR1!0.71!5.12!EGR1;;chr3:128207349..128207386,-!p3@GATA2!0.71!4.17!GATA2;;chr13:41593425..41593480,-!p1@ELF1!0.70!28.84!ELF1;;chr10:51572408..51572454,+!p3@NCOA4!0.70!26.38!NCOA4;;chr7:148581360..148581425,-!p1@EZH2!0.70!22.39!EZH2;;chr2:74375058..74375069,-!p3@BOLA3!0.70!8.16!BOLA3;;chr14:29235961..29236008,+!p1@FOXG1!0.70!3.98!FOXG1;;chr16:88519669..88519726,+!p1@ZFPM1!0.69!39.66!ZFPM1;;chr14:55493763..55493824,-!p1@WDHD1!0.68!32.64!WDHD1;;chr6:12008986..12009016,+!p3@HIVEP1!0.68!13.09!HIVEP1;;chr6:50789717..50789729,+!p4@TFAP2B!0.68!3.80!TFAP2B;;chr2:200322259..200322280,-!p5@SATB2!0.68!3.80!SATB2;;chr12:54694686..54694697,-!p8@NFE2!0.68!3.80!NFE2;;chr1:246729544..246729572,-!p1@TFB2M!0.67!41.37!TFB2M;;chr16:68119324..68119364,+!p1@NFATC3!0.67!18.60!NFATC3;;chr19:23433144..23433204,-!p1@ZNF724P!0.67!18.60!ZNF724P;;chr8:37963407..37963454,+!p2@ASH2L!0.67!12.14!ASH2L;;chr19:53445819..53445860,-!p2@ZNF321P,p2@ZNF816-ZNF321P,p2@ZNF816!0.66!11.95!ZNF321P;;chr10:94449675..94449694,+!p2@HHEX!0.66!10.63!HHEX;;chr10:97889464..97889494,+!p3@ZNF518A!0.66!7.21!ZNF518A;;chr1:43148625..43148710,+!p3@YBX1!0.66!7.02!YBX1;;chr11:19262486..19262512,-!p4@E2F8!0.66!4.55!E2F8;;chr11:19262461..19262476,-!p5@E2F8!0.66!3.61!E2F8;;chr11:31832658..31832681,-!p1@PAX6!0.66!3.61!PAX6;;chr9:124976328..124976372,-!p2@LHX6!0.66!3.61!LHX6;;chr19:22193731..22193751,-!p1@ZNF208!0.66!3.61!ZNF208;;chr10:44070016..44070069,-!p1@ZNF239!0.65!11.76!ZNF239;;chr8:124286670..124286702,-!p3@ZHX1!0.65!6.45!ZHX1;;chr17:46687959..46688007,-!p2@HOXB7!0.64!4.93!HOXB7;;chr18:55102598..55102623,+!p1@ONECUT2!0.64!3.42!ONECUT2;;chr7:50343895..50343936,+!p5@IKZF1!0.64!3.42!IKZF1;;chr7:99680302..99680329,-!p5@ZNF3!0.64!3.42!ZNF3;;chr11:32457103..32457123,-!p3@WT1!0.64!3.42!WT1;;chr6:34204672..34204692,+!p1@HMGA1!0.63!437.19!HMGA1;;chr19:9695169..9695188,-!p1@ZNF121!0.63!68.12!ZNF121;;chr4:38665769..38665801,+!p2@KLF3!0.63!34.91!KLF3;;chr10:44101850..44101896,+!p1@ZNF485!0.63!11.76!ZNF485;;chr16:67881588..67881612,-!p2@CENPT!0.63!4.74!CENPT;;chr11:19263192..19263222,-!p2@E2F8!0.63!4.17!E2F8;;chr11:16403882..16403908,-!p9@SOX6!0.63!3.23!SOX6;;chr7:50344251..50344288,+!p3@IKZF1!0.63!3.23!IKZF1;;chr1:149858461..149858479,+!p1@BOLA1!0.62!1497.16!BOLA1;;chr8:28748099..28748141,+!p2@HMBOX1!0.62!11.20!HMBOX1;;chr10:44101902..44101932,+!p2@ZNF485!0.62!7.21!ZNF485;;chr19:53496806..53496848,-!p2@ZNF702P!0.62!5.12!ZNF702P;;chr18:77155922..77155939,+!p1@NFATC1!0.61!9.68!NFATC1;;chr5:137804357..137804390,+!p4@EGR1!0.61!3.80!EGR1;;chr12:56415287..56415300,+!p5@IKZF4!0.61!3.04!IKZF4;;chr17:41623692..41623715,-!p1@ETV4!0.60!14.99!ETV4;;chr19:11750566..11750627,+!p1@ZNF833P!0.60!4.36!ZNF833P;;chr1:78444778..78444800,-!p2@FUBP1!0.59!61.29!FUBP1;;chr19:58331088..58331106,+!p1@ZNF587!0.59!49.53!ZNF587;;chr14:74226961..74227020,-!p1@C14orf43!0.59!22.77!C14orf43;;chr16:29818160..29818188,+!p6@MAZ!0.59!16.13!MAZ;;chr11:101000524..101000535,-!p3@PGR!0.59!2.85!PGR;;chr2:145277589..145277612,-!p12@ZEB2!0.59!2.85!ZEB2;;chr4:38665810..38665827,+!p1@KLF3!0.58!50.66!KLF3;;chr2:74374995..74375055,-!p1@BOLA3!0.57!152.18!BOLA3;;chr8:128748308..128748324,+!p2@MYC!0.57!94.69!MYC;;chr16:68118689..68118733,+!p3@NFATC3!0.57!7.97!NFATC3;;chr9:127533519..127533573,-!p2@NR6A1!0.57!3.42!NR6A1;;chr20:42295745..42295765,+!p1@MYBL2!0.56!54.08!MYBL2;;chr1:246729483..246729538,-!p2@TFB2M!0.56!31.31!TFB2M;;chr15:37392094..37392116,-!p6@MEIS2!0.56!3.42!MEIS2;;chr7:50344144..50344157,+!p6@IKZF1!0.56!2.66!IKZF1;;chr11:100999802..100999819,-!p4@PGR!0.56!2.66!PGR;;chr12:54694738..54694749,-!p5@NFE2!0.56!2.66!NFE2;;chr13:79177674..79177701,-!p1@POU4F1!0.56!2.66!POU4F1;;chr3:141747950..141748004,-!p7@TFDP2!0.56!2.66!TFDP2;;chr6:44355257..44355315,+!p2@CDC5L!0.55!14.23!CDC5L;;chr5:88179017..88179046,-!p2@MEF2C!0.55!12.33!MEF2C;;chr16:1429627..1429662,-!p2@UNKL!0.55!8.92!UNKL;;chr8:53322347..53322378,-!p2@ST18!0.54!2.47!ST18;;chr9:124976185..124976212,-!p4@LHX6!0.54!2.47!LHX6;;chr9:124976299..124976327,-!p3@LHX6!0.54!2.47!LHX6;;chr11:31833719..31833735,-!p15@PAX6!0.54!2.47!PAX6;;chr11:31833736..31833778,-!p13@PAX6!0.54!2.47!PAX6;;chr12:56414795..56414836,+!p4@IKZF4!0.54!2.47!IKZF4;;chr13:100623375..100623425,-!p1@ZIC5!0.54!2.47!ZIC5;;chr1:226595726..226595737,-!p2@PARP1!0.53!6.83!PARP1;;chr3:18486354..18486377,-!p2@SATB1!0.53!3.23!SATB1;;chr12:54785054..54785072,-!p4@ZNF385A!0.53!2.85!ZNF385A;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.52!5.88!SOHLH2;;chr11:31832610..31832639,-!p5@PAX6!0.52!2.28!PAX6;;chr14:37131058..37131139,+!p1@PAX9!0.52!2.28!PAX9;;chr1:3569072..3569093,+!p1@TP73!0.52!2.28!TP73;;chr5:134369973..134369984,-!p3@PITX1!0.52!2.28!PITX1;;chr3:148804275..148804346,-!p1@HLTF!0.51!96.39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IA;;chr9:127358120..127358170,-!p3@NR6A1!0.20!0.57!NR6A1;;chr2:10091783..10091811,+!p2@GRHL1!0.20!0.57!GRHL1;;chr2:145275982..145276003,-!p7@ZEB2!0.20!0.57!ZEB2;;chr2:145277632..145277638,-!p17@ZEB2!0.20!0.57!ZEB2;;chr2:169312350..169312362,+!p4@CERS6!0.20!0.57!CERS6;;chr2:200213794..200213807,-!p9@SATB2!0.20!0.57!SATB2;;chr2:200322213..200322224,-!p14@SATB2!0.20!0.57!SATB2;;chr3:138665921..138665932,-!p6@FOXL2!0.20!0.57!FOXL2;;chr3:18463329..18463336,-!p15@SATB1!0.20!0.57!SATB1;;chr4:103423079..103423112,+!p4@NFKB1!0.20!0.57!NFKB1;;chr10:102891168..102891197,+!p3@TLX1!0.20!0.57!TLX1;;chr10:76586164..76586180,+!p8@KAT6B!0.20!0.57!KAT6B;;chr11:100996790..100996823,-!p10@PGR!0.20!0.57!PGR;;chr11:31832549..31832562,-!p10@PAX6!0.20!0.57!PAX6;;chr11:31832862..31832884,-!p2@PAX6!0.20!0.57!PAX6;;chr11:32457194..32457200,-!p11@WT1!0.20!0.57!WT1;;chr12:54394416..54394467,+!p5@HOXC9!0.20!0.57!HOXC9;;chr13:41556678..41556692,-!p15@ELF1!0.20!0.57!ELF1;;chr13:72441074..72441172,-!p2@DACH1!0.20!0.57!DACH1;;chr14:21567009..21567025,-!p9@ZNF219!0.20!0.57!ZNF219;;chr14:38064429..38064486,-!p1@FOXA1!0.20!0.57!FOXA1;;chr14:64760984..64761000,-!p2@ESR2!0.20!0.57!ESR2;;chr22:41601296..41601355,+!p1@L3MBTL2!0.19!15.56!L3MBTL2;;chr12:46123464..46123512,+!p1@ARID2!0.19!7.40!ARID2;;chr11:123612319..123612395,-!p1@ZNF202!0.19!7.21!ZNF202;;chr1:161736072..161736093,+!p2@ATF6!0.19!5.88!ATF6;;chr9:99616768..99616819,-!p1@ZNF782!0.19!5.69!ZNF782;;chr19:40596828..40596855,-!p1@ZNF780A!0.19!5.12!ZNF780A;;chr16:2059754..2059777,-!p2@ZNF598!0.19!4.17!ZNF598;;chr15:37392616..37392638,-!p2@MEIS2!0.19!3.61!MEIS2;;chrX:129402768..129402796,-!p2@ZNF280C!0.19!3.61!ZNF280C;;chr3:150126706..150126754,+!p5@TSC22D2!0.19!3.61!TSC22D2;;chr14:21994449..21994524,-!p2@SALL2!0.19!3.42!SALL2;;chr1:78444714..78444725,-!p3@FUBP1!0.19!3.04!FUBP1;;chr17:38256932..38256965,-!p4@NR1D1!0.19!2.28!NR1D1;;chr2:70314240..70314256,+!p4@PCBP1!0.19!2.09!PCBP1;;chr17:61920116..61920131,-!p5@SMARCD2!0.19!1.90!SMARCD2;;chr12:53574338..53574358,+!p2@ZNF740!0.19!1.90!ZNF740;;chr7:64254834..64254854,+!p2@ZNF138!0.19!1.71!ZNF138;;chr1:114302066..114302080,-!p2@PHTF1!0.19!1.71!PHTF1;;chrX:70316005..70316034,+!p2@FOXO4!0.19!1.71!FOXO4;;chr18:47814010..47814021,-!p3@CXXC1!0.19!1.52!CXXC1;;chr8:116680833..116680881,-!p7@TRPS1!0.19!1.33!TRPS1;;chr15:37392703..37392717,-!p8@MEIS2!0.19!1.14!MEIS2;;chr4:149363544..149363583,-!p3@NR3C2!0.19!0.76!NR3C2;;chr1:35644482..35644486,-!p11@SFPQ!0.19!0.76!SFPQ;;chr1:59165724..59165751,-!p1@MYSM1!0.18!31.12!MYSM1;;chr1:155826967..155827018,-!p1@GON4L!0.18!23.91!GON4L;;chr12:77459306..77459365,-!p1@E2F7!0.18!16.70!E2F7;;chr8:146052918..146052975,+!p1@ZNF7!0.18!14.61!ZNF7;;chr19:44100728..44100804,+!p1@SRRM5,p1@ZNF576!0.18!12.71!ZNF576;;chr1:167190091..167190156,+!p1@POU2F1!0.18!10.25!POU2F1;;chr2:70142189..70142223,+!p2@MXD1!0.18!9.11!MXD1;;chr2:61108695..61108753,+!p1@REL!0.18!8.73!REL;;chr1:155532531..155532605,-!p1@ASH1L!0.18!8.54!ASH1L;;chr19:53898380..53898422,+!p1@ZNF765!0.18!7.59!ZNF765;;chr6:34205372..34205412,+!p5@HMGA1!0.18!6.26!HMGA1;;chr10:97889784..97889827,+!p1@ZNF518A!0.18!5.88!ZNF518A;;chr19:36706055..36706074,+!p3@ZNF146!0.18!5.69!ZNF146;;chr9:125693757..125693818,-!p1@ZBTB26!0.18!5.31!ZBTB26;;chr3:44666551..44666577,+!p2@ZNF197!0.18!4.36!ZNF197;;chr19:44331493..44331552,+!p1@ZNF283!0.18!4.17!ZNF283;;chr19:24097675..24097699,+!p1@ZNF726!0.18!3.80!ZNF726;;chr19:19516543..19516559,+!p6@GATAD2A!0.18!3.61!GATAD2A;;chr18:47808120..47808171,-!p2@MBD1!0.18!2.66!MBD1;;chr8:146228226..146228264,-!p2@ZNF252!0.18!2.47!ZNF252P;;chr5:180287681..180287694,-!p2@ZFP62!0.18!2.09!ZFP62;;chr8:71316222..71316259,-!p5@NCOA2!0.18!1.33!NCOA2;;chr9:73028638..73028650,-!p7@KLF9!0.18!1.33!KLF9;;chr8:128752771..128752843,+!p9@MYC!0.18!1.14!MYC;;chr8:116681022..116681042,-!p10@TRPS1!0.18!0.95!TRPS1;;chr19:39390652..39390663,+!p3@NFKBIB!0.18!0.95!NFKBIB;;chr10:98592751..98592765,+!p5@LCOR!0.18!0.95!LCOR;;chr16:67596417..67596497,+!p1@CTCF!0.17!45.92!CTCF;;chr11:65667846..65667868,-!p1@FOSL1!0.17!34.91!FOSL1;;chr5:176449684..176449722,+!p1@ZNF346!0.17!24.67!ZNF346;;chr7:64467057..64467078,-!p1@ZNF117!0.17!24.67!ZNF117;;chr20:30795511..30795562,-!p1@PLAGL2!0.17!23.72!PLAGL2;;chr3:33481835..33481905,-!p1@UBP1!0.17!22.39!UBP1;;chr21:30671235..30671253,+!p1@BACH1!0.17!16.32!BACH1;;chr11:67007477..67007493,+!p2@KDM2A!0.17!10.82!KDM2A;;chr16:29819403..29819442,+!p5@MAZ!0.17!10.25!MAZ;;chr7:149194756..149194839,-!p1@ZNF746!0.17!9.87!ZNF746;;chr9:99540335..99540388,-!p1@ZNF510!0.17!9.11!ZNF510;;chr19:58361185..58361235,+!p2@ZNF587!0.17!6.45!ZNF587;;chr19:45579725..45579743,-!p1@ZNF296!0.17!5.31!ZNF296;;chr21:30671690..30671762,+!p2@BACH1!0.17!3.80!BACH1;;chr11:695215..695231,-!p2@DEAF1!0.17!1.71!DEAF1;;chr2:185463247..185463263,+!p1@ZNF804A!0.17!1.52!ZNF804A;;chr19:19496539..19496576,+!p8@GATAD2A!0.17!1.52!GATAD2A;;chr6:15246217..15246228,+!p3@JARID2!0.17!1.52!JARID2;;chr10:22292591..22292606,-!p2@DNAJC1!0.17!1.33!DNAJC1;;chr17:47439354..47439383,-!p3@ZNF652!0.17!1.33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@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562.CNhs11250.10454-106G4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562.CNhs11250.10454-106G4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562.CNhs11250.10454-106G4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562.CNhs11250.10454-106G4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562.CNhs11250.10454-106G4.hg38.nobarcode.ctss.bed.gz
 |id=FF:10454-106G4
 |is_a=EFO:0002091;;FF:0000210;;FF:0100664
 |is_obsolete=
 |library_id=CNhs11250
-|library_id_phase_based=1:CNhs11250
+|library_id_phase_based=2:CNhs11250
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10454
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10454
 |name=chronic myelogenous leukemia cell line:K562
 |namespace=FANTOM5
@@ Line 51: / Line 61: @@
 |profile_cagescan=NCig10060,,,
 |profile_hcage=CNhs11250,LSID757,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10454-106G4;search_select_hide=table117:FF:10454-106G4
 }}

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Latest revision as of 14:03, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0