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(Created page with "{{f5samples |id=FF:10463-106H4 |name=squamous cell carcinoma cell line:EC-GI-10, biol_rep1 |sample_id=10463 |rna_tube_id=106H4 |rna_box=106 |rna_position=H4 |sample_cel...")
 
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{{f5samples
{{f5samples
|id=FF:10463-106H4
|DRA_sample_Accession=CAGE@SAMD00005462
|name=squamous cell carcinoma cell line:EC-GI-10, biol_rep1
|accession_numbers=CAGE;DRX008014;DRR008886;DRZ000311;DRZ001696;DRZ011661;DRZ013046
|sample_id=10463
|rna_tube_id=106H4
|rna_box=106
|rna_position=H4
|sample_cell_lot=
|sample_cell_catalog=RCB0774
|sample_company=RIKEN Bioresource centre
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=esophagus
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=65
|sample_ethnicity=J
|rna_rin=
|rna_od260/230=1.99000
|rna_od260/280=2.11000
|sample_cell_type=unclassifiable
|sample_cell_line=EC-GI-10
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=squamous cell carcinoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=37.71100
|rna_concentration=1.50844
|sample_note=
|profile_hcage=CNhs11252,LSID757,release008,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000076,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:1749,DOID:305,DOID:4
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000255
|sample_description=
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:1749
 
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0102024,FF:0101120
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.57!369.43!EHF;;chr3:189507432..189507459,+!p1@TP63!2.22!165.16!TP63;;chr1:201979743..201979762,+!p1@ELF3!2.22!163.20!ELF3;;chr1:201979703..201979721,+!p2@ELF3!2.02!102.67!ELF3;;chr17:7493405..7493419,-!p1@SOX15!1.95!89.10!SOX15;;chr1:209979467..209979494,-!p1@IRF6!1.94!97.13!IRF6;;chr8:10588010..10588030,-!p1@SOX7!1.79!61.24!SOX7;;chr17:80797886..80797906,-!p1@ZNF750!1.79!59.99!ZNF750;;chr2:176969228..176969260,+!p1@HOXD11!1.77!58.03!HOXD11;;chr8:102504651..102504683,+!p1@GRHL2!1.63!41.78!GRHL2;;chr14:37131058..37131139,+!p1@PAX9!1.60!38.57!PAX9;;chr14:38064429..38064486,-!p1@FOXA1!1.58!37.14!FOXA1;;chr6:1312325..1312340,+!p1@FOXQ1!1.54!54.46!FOXQ1;;chr6:126240442..126240459,+!p4@NCOA7!1.54!42.32!NCOA7;;chr1:6479968..6479986,-!p1@HES2!1.54!33.75!HES2;;chr11:34642656..34642667,+!p2@EHF!1.54!33.39!EHF;;chr13:73633131..73633149,+!p1@KLF5!1.53!334.07!KLF5;;chr6:126240380..126240430,+!p2@NCOA7!1.53!82.85!NCOA7;;chr5:2751762..2751784,-!p1@IRX2!1.49!29.82!IRX2;;chr6:10415484..10415508,-!p3@TFAP2A!1.45!26.96!TFAP2A;;chr12:54785074..54785122,-!p2@ZNF385A!1.42!38.21!ZNF385A;;chr2:176969179..176969226,+!p2@HOXD11!1.34!20.89!HOXD11;;chr1:209979411..209979433,-!p2@IRF6!1.31!19.46!IRF6;;chr5:134369905..134369972,-!p1@PITX1!1.26!26.25!PITX1;;chr12:54785054..54785072,-!p4@ZNF385A!1.26!19.64!ZNF385A;;chr20:55204351..55204377,+!p1@TFAP2C!1.24!20.71!TFAP2C;;chr17:46687959..46688007,-!p2@HOXB7!1.23!21.96!HOXB7;;chr5:134369879..134369898,-!p2@PITX1!1.19!14.46!PITX1;;chr17:46126136..46126152,+!p1@NFE2L1!1.18!714.75!NFE2L1;;chr17:7492684..7492778,-!p2@SOX15!1.18!30.00!SOX15;;chr6:10412600..10412637,-!p1@TFAP2A!1.18!23.39!TFAP2A;;chr7:96654133..96654150,-!p1@DLX5!1.18!14.11!DLX5;;chr15:83953397..83953425,-!p1@BNC1!1.15!15.18!BNC1;;chr3:181429704..181429722,+!p1@SOX2!1.10!11.61!SOX2;;chr19:2867325..2867348,+!p1@ZNF556!1.09!11.43!ZNF556;;chr6:10419768..10419819,-!p6@TFAP2A!1.08!11.07!TFAP2A;;chr6:126240463..126240489,+!p6@NCOA7!1.07!12.14!NCOA7;;chr2:46524897..46524911,+!p2@EPAS1!1.05!28.57!EPAS1;;chr6:10415276..10415341,-!p2@TFAP2A!1.04!12.14!TFAP2A;;chr12:27485762..27485776,+!p3@ARNTL2!1.03!26.60!ARNTL2;;chr7:27205136..27205164,-!p1@HOXA9!1.03!9.64!HOXA9;;chr7:97840743..97840786,+!p1@BHLHA15!1.02!9.46!BHLHA15;;chr6:126102292..126102329,+!p3@NCOA7!1.00!30.00!NCOA7;;chr7:27205106..27205134,-!p2@HOXA9!1.00!8.93!HOXA9;;chr2:70142232..70142251,+!p1@MXD1!0.99!50.35!MXD1;;chr14:35872962..35873025,-!p3@NFKBIA!0.99!22.50!NFKBIA;;chr17:46688334..46688385,-!p1@HOXB7!0.98!12.50!HOXB7;;chr12:54447599..54447630,+!p3@HOXC4!0.97!10.18!HOXC4;;chr5:137804405..137804444,+!p3@EGR1!0.97!10.00!EGR1;;chr22:24093154..24093183,-!p2@ZNF70!0.97!8.39!ZNF70;;chr20:30193083..30193098,+!p1@ID1!0.96!677.08!ID1;;chr1:158979792..158979814,+!p2@IFI16!0.96!79.64!IFI16;;chr15:67418047..67418093,+!p4@SMAD3!0.95!10.18!SMAD3;;chr6:126240356..126240379,+!p7@NCOA7!0.95!9.82!NCOA7;;chr3:147111198..147111225,+!p4@ZIC1!0.95!7.86!ZIC1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.94!71.24!PPP1R13L;;chr2:178128149..178128198,-!p2@NFE2L2!0.94!43.03!NFE2L2;;chr2:60780753..60780800,-!p1@BCL11A!0.94!39.28!BCL11A;;chr18:19749541..19749557,+!p1@GATA6!0.94!24.82!GATA6;;chr7:27153454..27153469,-!p2@HOXA3!0.94!7.68!HOXA3;;chr8:102504690..102504704,+!p3@GRHL2!0.93!7.50!GRHL2;;chr3:189507460..189507471,+!p3@TP63!0.93!7.50!TP63;;chr6:85473156..85473210,-!p2@TBX18!0.92!9.11!TBX18;;chr3:193853927..193853944,+!p1@HES1!0.89!230.87!HES1;;chr17:80797863..80797874,-!p2@ZNF750!0.89!6.79!ZNF750;;chr6:10413188..10413249,-!p7@TFAP2A!0.88!6.61!TFAP2A;;chr9:124976185..124976212,-!p4@LHX6!0.88!6.61!LHX6;;chr12:54332608..54332636,+!p1@HOXC13!0.87!6.43!HOXC13;;chr14:37132241..37132304,+!p3@PAX9!0.87!6.43!PAX9;;chr3:181429741..181429767,+!p2@SOX2!0.87!6.43!SOX2;;chr1:212782094..212782109,+!p1@ATF3!0.86!181.59!ATF3;;chr7:28448965..28448994,+!p2@CREB5!0.86!23.39!CREB5;;chr1:158979872..158979898,+!p3@IFI16!0.86!20.36!IFI16;;chr6:126102254..126102289,+!p5@NCOA7!0.85!17.68!NCOA7;;chr6:10412392..10412409,-!p4@TFAP2A!0.84!6.79!TFAP2A;;chr7:35293685..35293718,-!p1@TBX20!0.84!5.89!TBX20;;chr8:102504979..102505010,+!p2@GRHL2!0.84!5.89!GRHL2;;chr14:37051798..37051831,-!p1@NKX2-8!0.84!5.89!NKX2-8;;chr12:52445218..52445237,+!p1@NR4A1!0.83!77.49!NR4A1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.83!12.86!ZNF395;;chr4:299227..299272,-!p1@ZNF732!0.83!5.71!ZNF732;;chr3:141868357..141868393,-!p3@TFDP2!0.82!39.46!TFDP2;;chr5:2751785..2751808,-!p2@IRX2!0.82!5.54!IRX2;;chr17:48046543..48046575,+!p2@DLX4!0.82!5.54!DLX4;;chr20:18038521..18038571,-!p1@OVOL2!0.82!5.54!OVOL2;;chr1:935467..935484,-!p1@HES4!0.81!26.07!HES4;;chr6:10419824..10419840,-!p9@TFAP2A!0.80!5.36!TFAP2A;;chr13:28543285..28543314,-!p2@CDX2!0.80!5.36!CDX2;;chr14:35873947..35873965,-!p1@NFKBIA!0.79!358.54!NFKBIA;;chr9:14314131..14314147,-!p2@NFIB!0.79!30.89!NFIB;;chr6:1389789..1389821,+!p1@FOXF2!0.79!7.32!FOXF2;;chr14:38064307..38064323,-!p3@FOXA1!0.79!5.18!FOXA1;;chr2:176994408..176994492,+!p1@HOXD8!0.78!5.00!HOXD8;;chr17:46703212..46703238,-!p2@HOXB9!0.78!5.00!HOXB9;;chr1:204042233..204042249,+!p1@SOX13!0.77!33.75!SOX13;;chr6:19837592..19837621,+!p1@ID4!0.77!32.50!ID4;;chr1:158979851..158979865,+!p5@IFI16!0.77!11.43!IFI16;;chr20:50721803..50721857,-!p2@ZFP64!0.77!8.03!ZFP64;;chr15:67418119..67418162,+!p5@SMAD3!0.77!5.54!SMAD3;;chr1:209979449..209979460,-!p3@IRF6!0.76!4.82!IRF6;;chr3:147111231..147111281,+!p3@ZIC1!0.76!4.82!ZIC1;;chr12:11802600..11802685,+!p1@ETV6!0.75!78.39!ETV6;;chr12:80084737..80084763,-!p3@PAWR!0.75!19.11!PAWR;;chr14:24630465..24630531,+!p1@IRF9!0.74!191.59!IRF9;;chr17:47439437..47439533,-!p1@ZNF652!0.74!40.35!ZNF652;;chr12:27485823..27485868,+!p2@ARNTL2!0.74!19.82!ARNTL2;;chr14:61116183..61116208,-!p1@SIX1!0.74!18.75!SIX1;;chr3:169381420..169381535,-!p1@MECOM!0.74!5.36!MECOM;;chr3:157823517..157823562,-!p1@SHOX2!0.74!4.82!SHOX2;;chr2:176969097..176969109,+!p3@HOXD11!0.74!4.46!HOXD11;;chr17:46132044..46132080,+!p4@NFE2L1!0.74!4.46!NFE2L1;;chr17:46687935..46687950,-!p3@HOXB7!0.74!4.46!HOXB7;;chr17:46703942..46703964,-!p4@HOXB9!0.74!4.46!HOXB9;;chr9:129376201..129376225,+!p1@LMX1B!0.74!4.46!LMX1B;;chr13:73636252..73636307,+!p2@KLF5!0.73!5.18!KLF5;;chr19:45252008..45252024,+!p2@BCL3!0.72!15.36!BCL3;;chr5:137804357..137804390,+!p4@EGR1!0.72!5.18!EGR1;;chr6:28321909..28321965,-!p3@ZNF323!0.72!4.29!ZNF323;;chr3:189507523..189507535,+!p5@TP63!0.72!4.29!TP63;;chr8:72756063..72756125,-!p1@MSC!0.71!9.11!MSC;;chr2:176969124..176969155,+!p5@HOXD11!0.71!4.11!HOXD11;;chr14:38064590..38064606,-!p2@FOXA1!0.71!4.11!FOXA1;;chr19:9609272..9609297,-!p1@ZNF560!0.71!4.11!ZNF560;;chr1:37940170..37940190,+!p1@ZC3H12A!0.70!56.78!ZC3H12A;;chr7:27135591..27135658,-!p1@HOXA1!0.70!8.21!HOXA1;;chr12:27485785..27485816,+!p1@ARNTL2!0.69!30.89!ARNTL2;;chr2:157189180..157189290,-!p1@NR4A2!0.69!23.21!NR4A2;;chr1:161736038..161736056,+!p4@ATF6!0.69!10.00!ATF6;;chr1:935398..935465,-!p2@HES4!0.69!8.75!HES4;;chr2:10091815..10091864,+!p1@GRHL1!0.69!5.36!GRHL1;;chr19:33865009..33865090,+!p3@CEBPG!0.69!5.36!CEBPG;;chr12:54393880..54393962,+!p1@HOXC9!0.69!3.93!HOXC9;;chr2:61108695..61108753,+!p1@REL!0.68!30.00!REL;;chr16:30537839..30537929,-!p1@ZNF768!0.68!27.14!ZNF768;;chr20:42543441..42543497,+!p1@TOX2!0.68!19.28!TOX2;;chr1:158969752..158969780,+!p6@IFI16!0.68!7.14!IFI16;;chr1:50889103..50889145,-!p1@DMRTA2!0.68!3.75!DMRTA2;;chr5:170736243..170736279,+!p1@TLX3!0.68!3.75!TLX3;;chr6:10412576..10412599,-!p5@TFAP2A!0.68!3.75!TFAP2A;;chr7:96634850..96634874,+!p3@DLX6!0.68!3.75!DLX6;;chr7:96654026..96654061,-!p2@DLX5!0.68!3.75!DLX5;;chr8:81787006..81787031,-!p2@ZNF704!0.68!3.75!ZNF704;;chr9:110252035..110252057,-!p1@KLF4!0.67!68.03!KLF4;;chr12:53625966..53626012,-!p2@RARG!0.67!10.71!RARG;;chr19:50432453..50432468,+!p1@ATF5!0.66!232.83!ATF5;;chr8:49833948..49833973,-!p2@SNAI2!0.66!25.89!SNAI2;;chr19:33864571..33864596,+!p2@CEBPG!0.66!9.82!CEBPG;;chr3:32023232..32023273,+!p1@ZNF860!0.66!5.36!ZNF860;;chr14:24630902..24630948,+!p2@IRF9!0.66!4.46!IRF9;;chr10:8095593..8095625,+!p3@GATA3!0.66!4.29!GATA3;;chr17:46703687..46703740,-!p1@HOXB9!0.66!3.57!HOXB9;;chr17:46806067..46806097,-!p1@HOXB13!0.66!3.57!HOXB13;;chr17:46806098..46806118,-!p3@HOXB13!0.66!3.57!HOXB13;;chr1:50889155..50889173,-!p2@DMRTA2!0.66!3.57!DMRTA2;;chr4:38665810..38665827,+!p1@KLF3!0.65!59.28!KLF3;;chr9:14314566..14314618,-!p1@NFIB!0.65!48.21!NFIB;;chr12:19592405..19592492,+!p2@AEBP2!0.65!35.00!AEBP2;;chr11:65667884..65667895,-!p2@FOSL1!0.65!15.53!FOSL1;;chr14:23755297..23755350,-!p1@HOMEZ!0.64!47.14!HOMEZ;;chr7:17338266..17338282,+!p1@AHR!0.64!42.50!AHR;;chr5:137804484..137804498,+!p2@EGR1!0.64!15.53!EGR1;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.64!6.07!MEIS3P1;;chr15:67458861..67458879,+!p17@SMAD3!0.64!3.39!SMAD3;;chr11:129245526..129245553,+!p1@BARX2!0.64!3.39!BARX2;;chr7:73038839..73038862,-!p1@MLXIPL!0.64!3.39!MLXIPL;;chr9:100616439..100616476,+!p3@FOXE1!0.64!3.39!FOXE1;;chr17:46125707..46125746,+!p2@NFE2L1!0.63!204.98!NFE2L1;;chr6:21597600..21597664,+!p3@SOX4!0.62!5.71!SOX4;;chr5:170736216..170736238,+!p2@TLX3!0.62!3.21!TLX3;;chr3:69915385..69915438,+!p3@MITF!0.62!3.21!MITF;;chr11:65554528..65554546,+!p1@OVOL1!0.62!3.21!OVOL1;;chr9:22447422..22447483,+!p1@DMRTA1!0.61!3.04!DMRTA1;;chr9:2158443..2158481,+!p2@SMARCA2!0.60!9.82!SMARCA2;;chr1:164528297..164528309,+!p9@PBX1!0.60!4.11!PBX1;;chr2:178129414..178129517,-!p1@NFE2L2!0.59!140.52!NFE2L2;;chr9:3525968..3526016,-!p1@RFX3!0.59!20.18!RFX3;;chr17:47439568..47439641,-!p2@ZNF652!0.59!19.64!ZNF652;;chr8:123793860..123793921,+!p2@ZHX2!0.59!9.28!ZHX2;;chr2:172967621..172967637,-!p1@DLX2!0.59!8.93!DLX2;;chr10:97889464..97889494,+!p3@ZNF518A!0.59!6.07!ZNF518A;;chr3:168864315..168864339,-!p2@MECOM!0.59!5.18!MECOM;;chr20:48809000..48809053,+!p12@CEBPB!0.59!4.11!CEBPB;;chr17:46675420..46675465,-!p3@HOXB6!0.59!3.39!HOXB6;;chr6:126240490..126240501,+!p11@NCOA7!0.59!2.86!NCOA7;;chr7:27190547..27190591,-!p1@HOXA6!0.59!2.86!HOXA6;;chr9:124976154..124976177,-!p5@LHX6!0.59!2.86!LHX6;;chr2:113012592..113012671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|fonse_cell_line=FF:0101120
|fonse_cell_line=FF:0101120
|fonse_cell_line_closure=FF:0101120
|fonse_cell_line_closure=FF:0101120
Line 67: Line 39:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/squamous%2520cell%2520carcinoma%2520cell%2520line%253aEC-GI-10.CNhs11252.10463-106H4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/squamous%2520cell%2520carcinoma%2520cell%2520line%253aEC-GI-10.CNhs11252.10463-106H4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/squamous%2520cell%2520carcinoma%2520cell%2520line%253aEC-GI-10.CNhs11252.10463-106H4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/squamous%2520cell%2520carcinoma%2520cell%2520line%253aEC-GI-10.CNhs11252.10463-106H4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/squamous%2520cell%2520carcinoma%2520cell%2520line%253aEC-GI-10.CNhs11252.10463-106H4.hg38.nobarcode.ctss.bed.gz
|id=FF:10463-106H4
|is_a=EFO:0002091;;FF:0000210;;FF:0102024
|is_obsolete=
|library_id=CNhs11252
|library_id_phase_based=2:CNhs11252
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10463
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10463
|name=squamous cell carcinoma cell line:EC-GI-10
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11252,LSID757,release008,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=106
|rna_catalog_number=
|rna_concentration=1.50844
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=1.99
|rna_od260/280=2.11
|rna_position=H4
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=106H4
|rna_weight_ug=37.711
|sample_age=65
|sample_category=cell lines
|sample_cell_catalog=RCB0774
|sample_cell_line=EC-GI-10
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=squamous cell carcinoma
|sample_donor(cell lot)=
|sample_ethnicity=J
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;8.18646129041522e-261!GO:0043226;organelle;2.0067598900387e-207!GO:0043229;intracellular organelle;8.88310107449681e-207!GO:0043231;intracellular membrane-bound organelle;1.74513923131188e-199!GO:0043227;membrane-bound organelle;2.53819636809741e-199!GO:0005737;cytoplasm;4.1984872808705e-182!GO:0044422;organelle part;2.26448886170734e-144!GO:0044446;intracellular organelle part;6.81386540683153e-143!GO:0044444;cytoplasmic part;1.09947334810555e-115!GO:0032991;macromolecular complex;3.12315813021659e-95!GO:0005634;nucleus;2.66767311614853e-93!GO:0044237;cellular metabolic process;3.44618169884971e-93!GO:0044238;primary metabolic process;6.31548355741779e-90!GO:0043170;macromolecule metabolic process;7.74888131994167e-88!GO:0030529;ribonucleoprotein complex;7.32598194706652e-85!GO:0044428;nuclear part;1.80368234140209e-79!GO:0005515;protein binding;1.56962742370316e-75!GO:0003723;RNA binding;1.01322641555924e-74!GO:0043233;organelle lumen;5.89871272084978e-74!GO:0031974;membrane-enclosed lumen;5.89871272084978e-74!GO:0005739;mitochondrion;3.76712947781235e-57!GO:0043283;biopolymer metabolic process;1.35147602903414e-55!GO:0006412;translation;8.99045628234029e-53!GO:0005840;ribosome;1.2259882737586e-51!GO:0010467;gene expression;2.16516446505427e-51!GO:0006396;RNA processing;1.13690330119643e-50!GO:0019538;protein metabolic process;4.37570948979386e-50!GO:0031981;nuclear lumen;7.88533400844506e-49!GO:0015031;protein transport;1.47828483479109e-47!GO:0033036;macromolecule localization;1.80618621899512e-47!GO:0031090;organelle membrane;9.20419403453087e-47!GO:0016043;cellular component organization and biogenesis;9.20419403453087e-47!GO:0043234;protein complex;9.39402436969918e-47!GO:0044267;cellular protein metabolic process;9.51198013986049e-47!GO:0044260;cellular macromolecule metabolic process;4.71755441035319e-46!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.57522235991062e-46!GO:0003735;structural constituent of ribosome;9.88104655134901e-45!GO:0008104;protein localization;3.25988704460503e-43!GO:0045184;establishment of protein localization;9.21675401794208e-43!GO:0005829;cytosol;6.05316037251086e-41!GO:0043228;non-membrane-bound organelle;9.9927374094307e-40!GO:0043232;intracellular non-membrane-bound organelle;9.9927374094307e-40!GO:0016071;mRNA metabolic process;1.07663236487816e-39!GO:0009059;macromolecule biosynthetic process;4.1765846018955e-39!GO:0031967;organelle envelope;4.05495026016986e-38!GO:0033279;ribosomal subunit;4.661260780263e-38!GO:0031975;envelope;7.25537396718413e-38!GO:0044429;mitochondrial part;4.1619046198901e-37!GO:0009058;biosynthetic process;5.71341629416836e-36!GO:0008380;RNA splicing;6.38281677092047e-36!GO:0044249;cellular biosynthetic process;8.1234540529321e-36!GO:0006397;mRNA processing;1.22395090794787e-34!GO:0046907;intracellular transport;7.60240928434369e-34!GO:0006996;organelle organization and biogenesis;5.21620400740528e-32!GO:0003676;nucleic acid binding;4.68483622576854e-31!GO:0005654;nucleoplasm;1.85852297585398e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.02182321962916e-30!GO:0065003;macromolecular complex assembly;9.5628692356288e-30!GO:0006886;intracellular protein transport;1.12844532524396e-29!GO:0006259;DNA metabolic process;3.11158519778893e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.28460484981888e-27!GO:0022607;cellular component assembly;1.99024109393426e-26!GO:0005681;spliceosome;1.57325631632835e-25!GO:0016070;RNA metabolic process;2.72596016975975e-25!GO:0000166;nucleotide binding;4.68958462390179e-25!GO:0044451;nucleoplasm part;1.3257234328904e-24!GO:0005740;mitochondrial envelope;1.31548341649298e-23!GO:0051649;establishment of cellular localization;1.00260736807623e-22!GO:0019866;organelle inner membrane;1.38441392499966e-22!GO:0044445;cytosolic part;2.07703845296008e-22!GO:0007049;cell cycle;2.3934720942342e-22!GO:0051641;cellular localization;2.92071925181535e-22!GO:0031966;mitochondrial membrane;5.4010163568918e-22!GO:0012505;endomembrane system;1.92476071625494e-21!GO:0016462;pyrophosphatase activity;2.01790770473932e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.44019427628279e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;3.22869158613578e-21!GO:0017111;nucleoside-triphosphatase activity;9.34850286355456e-21!GO:0005743;mitochondrial inner membrane;1.01972433863821e-20!GO:0006512;ubiquitin cycle;1.02778286495925e-20!GO:0005730;nucleolus;1.35916607197946e-20!GO:0016874;ligase activity;1.58860393493393e-20!GO:0006119;oxidative phosphorylation;5.24822521789748e-20!GO:0015934;large ribosomal subunit;8.53840367856703e-20!GO:0051603;proteolysis involved in cellular protein catabolic process;1.14242173943636e-19!GO:0019941;modification-dependent protein catabolic process;2.27395494646362e-19!GO:0043632;modification-dependent macromolecule catabolic process;2.27395494646362e-19!GO:0015935;small ribosomal subunit;2.82577163130032e-19!GO:0044257;cellular protein catabolic process;3.08644814161168e-19!GO:0006457;protein folding;3.78723191387482e-19!GO:0006511;ubiquitin-dependent protein catabolic process;4.74408313556313e-19!GO:0022618;protein-RNA complex assembly;8.632009592003e-19!GO:0008134;transcription factor binding;1.2001791017195e-17!GO:0000502;proteasome complex (sensu Eukaryota);1.27886810660591e-17!GO:0044265;cellular macromolecule catabolic process;2.72459766879663e-17!GO:0032553;ribonucleotide binding;3.43457084176485e-17!GO:0032555;purine ribonucleotide binding;3.43457084176485e-17!GO:0043285;biopolymer catabolic process;5.47528659915568e-17!GO:0017076;purine nucleotide binding;6.36430853108605e-17!GO:0031980;mitochondrial lumen;1.00793743352325e-16!GO:0005759;mitochondrial matrix;1.00793743352325e-16!GO:0006974;response to DNA damage stimulus;1.41599545009334e-16!GO:0022402;cell cycle process;2.78233307330353e-16!GO:0030163;protein catabolic process;3.99788476521933e-16!GO:0048770;pigment granule;8.12575510089159e-16!GO:0042470;melanosome;8.12575510089159e-16!GO:0043412;biopolymer modification;9.89703627257083e-16!GO:0005694;chromosome;1.0812609151033e-15!GO:0008135;translation factor activity, nucleic acid binding;1.70952668445067e-15!GO:0044455;mitochondrial membrane part;1.83938220202198e-15!GO:0005783;endoplasmic reticulum;2.18527895181823e-15!GO:0006605;protein targeting;3.10864567202925e-15!GO:0006366;transcription from RNA polymerase II promoter;4.11992899238764e-15!GO:0005635;nuclear envelope;6.80233083561655e-15!GO:0051276;chromosome organization and biogenesis;6.87690328652431e-15!GO:0009057;macromolecule catabolic process;1.04131753299193e-14!GO:0048193;Golgi vesicle transport;1.05408557598086e-14!GO:0051082;unfolded protein binding;1.8232445850325e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.10389382069266e-14!GO:0005761;mitochondrial ribosome;3.2767883009685e-14!GO:0000313;organellar ribosome;3.2767883009685e-14!GO:0000278;mitotic cell cycle;4.01356998529445e-14!GO:0005794;Golgi apparatus;4.51280576325408e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.46824457356496e-14!GO:0012501;programmed cell death;1.00345373958977e-13!GO:0006915;apoptosis;1.53137975667256e-13!GO:0006464;protein modification process;1.53401222961208e-13!GO:0005746;mitochondrial respiratory chain;1.9647520763539e-13!GO:0005524;ATP binding;2.04930269482281e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.24665169737545e-13!GO:0006281;DNA repair;2.33789759006383e-13!GO:0016604;nuclear body;2.34549612256145e-13!GO:0032559;adenyl ribonucleotide binding;2.96999637190391e-13!GO:0031965;nuclear membrane;3.05643980250986e-13!GO:0044427;chromosomal part;3.69844763772678e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;4.27549496435153e-13!GO:0000375;RNA splicing, via transesterification reactions;4.27549496435153e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.27549496435153e-13!GO:0030554;adenyl nucleotide binding;6.43142088088448e-13!GO:0044432;endoplasmic reticulum part;6.96680806538695e-13!GO:0050136;NADH dehydrogenase (quinone) activity;9.26886551668295e-13!GO:0003954;NADH dehydrogenase activity;9.26886551668295e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.26886551668295e-13!GO:0042254;ribosome biogenesis and assembly;1.17943821265979e-12!GO:0016192;vesicle-mediated transport;1.93879776459378e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;2.02938931767937e-12!GO:0006913;nucleocytoplasmic transport;2.05632404331447e-12!GO:0044453;nuclear membrane part;2.05632404331447e-12!GO:0009719;response to endogenous stimulus;2.82489220487064e-12!GO:0008219;cell death;3.49897094834317e-12!GO:0016265;death;3.49897094834317e-12!GO:0043687;post-translational protein modification;3.59666649992336e-12!GO:0044248;cellular catabolic process;3.78614848608408e-12!GO:0006413;translational initiation;4.59541438460659e-12!GO:0016887;ATPase activity;5.05470624980045e-12!GO:0051169;nuclear transport;6.24262139345821e-12!GO:0003743;translation initiation factor activity;6.27980709360127e-12!GO:0006323;DNA packaging;8.34474383650362e-12!GO:0050794;regulation of cellular process;1.3509600099339e-11!GO:0004386;helicase activity;1.49787112527375e-11!GO:0051186;cofactor metabolic process;1.52252375248514e-11!GO:0006446;regulation of translational initiation;1.82728757988039e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.11760980332077e-11!GO:0042775;organelle ATP synthesis coupled electron transport;2.57708783066379e-11!GO:0042773;ATP synthesis coupled electron transport;2.57708783066379e-11!GO:0003712;transcription cofactor activity;3.96980999221955e-11!GO:0016607;nuclear speck;4.20510497791493e-11!GO:0006260;DNA replication;4.81181335800184e-11!GO:0005643;nuclear pore;5.32620005412686e-11!GO:0008639;small protein conjugating enzyme activity;5.48211543234565e-11!GO:0042623;ATPase activity, coupled;6.59225507631586e-11!GO:0030964;NADH dehydrogenase complex (quinone);6.9905225334488e-11!GO:0045271;respiratory chain complex I;6.9905225334488e-11!GO:0005747;mitochondrial respiratory chain complex I;6.9905225334488e-11!GO:0000087;M phase of mitotic cell cycle;7.14866872239465e-11!GO:0004842;ubiquitin-protein ligase activity;9.53730264946593e-11!GO:0006403;RNA localization;1.15824739758164e-10!GO:0007067;mitosis;1.22256897812343e-10!GO:0050657;nucleic acid transport;1.27382587775851e-10!GO:0051236;establishment of RNA localization;1.27382587775851e-10!GO:0050658;RNA transport;1.27382587775851e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.76923580352909e-10!GO:0019787;small conjugating protein ligase activity;2.33633300000054e-10!GO:0022403;cell cycle phase;2.56458292709912e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.85145354766474e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.14803237713721e-10!GO:0008026;ATP-dependent helicase activity;4.63668922768918e-10!GO:0051726;regulation of cell cycle;6.10493194023235e-10!GO:0048523;negative regulation of cellular process;7.21386691909288e-10!GO:0000074;regulation of progression through cell cycle;8.25231499879475e-10!GO:0005789;endoplasmic reticulum membrane;1.06920405885117e-09!GO:0006399;tRNA metabolic process;1.56402322368206e-09!GO:0008565;protein transporter activity;1.58405613932596e-09!GO:0016881;acid-amino acid ligase activity;1.6513373002364e-09!GO:0006732;coenzyme metabolic process;1.74317556830394e-09!GO:0005768;endosome;1.95075521559104e-09!GO:0051301;cell division;1.9546996605721e-09!GO:0006333;chromatin assembly or disassembly;3.35867876585068e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.56191171471477e-09!GO:0065004;protein-DNA complex assembly;4.39961947739701e-09!GO:0042981;regulation of apoptosis;4.4516572656151e-09!GO:0043067;regulation of programmed cell death;4.99906039043402e-09!GO:0000785;chromatin;5.21120333298687e-09!GO:0065002;intracellular protein transport across a membrane;8.2986721655361e-09!GO:0017038;protein import;8.50063918622294e-09!GO:0000279;M phase;1.04546653797416e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.14884648742588e-08!GO:0051246;regulation of protein metabolic process;1.29367250635766e-08!GO:0009055;electron carrier activity;1.35506057655482e-08!GO:0051028;mRNA transport;1.35506057655482e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.56372834644048e-08!GO:0048519;negative regulation of biological process;2.29497135218854e-08!GO:0043566;structure-specific DNA binding;2.4592175877067e-08!GO:0046930;pore complex;2.4592175877067e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.46219270704439e-08!GO:0006364;rRNA processing;4.56826328455238e-08!GO:0015986;ATP synthesis coupled proton transport;4.86643678174133e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.86643678174133e-08!GO:0006357;regulation of transcription from RNA polymerase II promoter;5.36730418025277e-08!GO:0019222;regulation of metabolic process;6.78176404765925e-08!GO:0032446;protein modification by small protein conjugation;7.08299112463998e-08!GO:0016072;rRNA metabolic process;7.92279475471385e-08!GO:0031324;negative regulation of cellular metabolic process;1.1987972235845e-07!GO:0016567;protein ubiquitination;1.31849817372179e-07!GO:0009259;ribonucleotide metabolic process;1.84050662407664e-07!GO:0006163;purine nucleotide metabolic process;1.966954486018e-07!GO:0005793;ER-Golgi intermediate compartment;2.14352862523809e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.1717858467286e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.24048320243824e-07!GO:0004812;aminoacyl-tRNA ligase activity;2.24048320243824e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.24048320243824e-07!GO:0050789;regulation of biological process;2.25837606073462e-07!GO:0015630;microtubule cytoskeleton;2.40010000800568e-07!GO:0005839;proteasome core complex (sensu Eukaryota);2.61929346393565e-07!GO:0006461;protein complex assembly;3.14646763304405e-07!GO:0051188;cofactor biosynthetic process;3.14893106261023e-07!GO:0005667;transcription factor complex;3.59802845691719e-07!GO:0043038;amino acid activation;3.94684123500971e-07!GO:0006418;tRNA aminoacylation for protein translation;3.94684123500971e-07!GO:0043039;tRNA aminoacylation;3.94684123500971e-07!GO:0003924;GTPase activity;3.95960499277333e-07!GO:0016568;chromatin modification;4.4335008384765e-07!GO:0019829;cation-transporting ATPase activity;4.57577216262249e-07!GO:0044431;Golgi apparatus part;4.95859399943391e-07!GO:0003697;single-stranded DNA binding;5.0651567029465e-07!GO:0006164;purine nucleotide biosynthetic process;5.42886210951438e-07!GO:0009150;purine ribonucleotide metabolic process;6.03798553854958e-07!GO:0016564;transcription repressor activity;6.41039859474869e-07!GO:0043069;negative regulation of programmed cell death;6.63702494781891e-07!GO:0004298;threonine endopeptidase activity;6.76179387707259e-07!GO:0007005;mitochondrion organization and biogenesis;6.95457891009163e-07!GO:0006754;ATP biosynthetic process;7.11524961536683e-07!GO:0006753;nucleoside phosphate metabolic process;7.11524961536683e-07!GO:0051170;nuclear import;8.33050235381005e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;9.79594153037326e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.1208812815972e-06!GO:0046034;ATP metabolic process;1.16295417415909e-06!GO:0043066;negative regulation of apoptosis;1.26362421181194e-06!GO:0009260;ribonucleotide biosynthetic process;1.27144906561484e-06!GO:0006916;anti-apoptosis;1.36886348739265e-06!GO:0009892;negative regulation of metabolic process;1.4965209356447e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.499902382164e-06!GO:0009141;nucleoside triphosphate metabolic process;1.6284251275294e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.65458866336168e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.65828908579083e-06!GO:0009056;catabolic process;1.67027600174064e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.67355540888223e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.67355540888223e-06!GO:0009108;coenzyme biosynthetic process;1.71732898440011e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.77900707212503e-06!GO:0005525;GTP binding;1.78154183184393e-06!GO:0006334;nucleosome assembly;1.87139596571542e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.9204863405107e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.99011014202095e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.0185533698526e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.02436404707848e-06!GO:0009144;purine nucleoside triphosphate metabolic process;2.02436404707848e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.04602101311218e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.04602101311218e-06!GO:0043623;cellular protein complex assembly;2.16397282785932e-06!GO:0006606;protein import into nucleus;2.22957247422285e-06!GO:0044440;endosomal part;2.35007776903085e-06!GO:0010008;endosome membrane;2.35007776903085e-06!GO:0005813;centrosome;2.41995840849024e-06!GO:0016563;transcription activator activity;2.66614260755412e-06!GO:0045259;proton-transporting ATP synthase complex;3.3221026856005e-06!GO:0000245;spliceosome assembly;3.57973848551651e-06!GO:0016779;nucleotidyltransferase activity;3.63820614258679e-06!GO:0031497;chromatin assembly;3.81744183029123e-06!GO:0003724;RNA helicase activity;5.3770245040229e-06!GO:0006793;phosphorus metabolic process;5.58781226365359e-06!GO:0006796;phosphate metabolic process;5.58781226365359e-06!GO:0006613;cotranslational protein targeting to membrane;5.95573807882754e-06!GO:0016469;proton-transporting two-sector ATPase complex;6.25846401989745e-06!GO:0006261;DNA-dependent DNA replication;7.43437266786314e-06!GO:0030120;vesicle coat;7.79606220896659e-06!GO:0030662;coated vesicle membrane;7.79606220896659e-06!GO:0016481;negative regulation of transcription;7.80035136091279e-06!GO:0016787;hydrolase activity;7.84659793891198e-06!GO:0005815;microtubule organizing center;7.95011601126707e-06!GO:0005770;late endosome;8.76288155408295e-06!GO:0048475;coated membrane;8.87085144110369e-06!GO:0030117;membrane coat;8.87085144110369e-06!GO:0003713;transcription coactivator activity;9.45704762166785e-06!GO:0000139;Golgi membrane;1.01484683750161e-05!GO:0009060;aerobic respiration;1.0233210439673e-05!GO:0031323;regulation of cellular metabolic process;1.30772951528886e-05!GO:0000151;ubiquitin ligase complex;1.31355032621423e-05!GO:0005819;spindle;1.31455072687829e-05!GO:0016740;transferase activity;1.374493907626e-05!GO:0005762;mitochondrial large ribosomal subunit;1.42581617734988e-05!GO:0000315;organellar large ribosomal subunit;1.42581617734988e-05!GO:0051168;nuclear export;2.3904005978013e-05!GO:0051427;hormone receptor binding;2.81105159844951e-05!GO:0032561;guanyl ribonucleotide binding;2.92436612983965e-05!GO:0019001;guanyl nucleotide binding;2.92436612983965e-05!GO:0048522;positive regulation of cellular process;3.01750738027965e-05!GO:0003690;double-stranded DNA binding;3.04347499897492e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.59546125796277e-05!GO:0006752;group transfer coenzyme metabolic process;3.99568989866451e-05!GO:0045333;cellular respiration;4.14002085033759e-05!GO:0006350;transcription;4.48394226896958e-05!GO:0031988;membrane-bound vesicle;4.77909443696471e-05!GO:0045786;negative regulation of progression through cell cycle;4.79588968648289e-05!GO:0003714;transcription corepressor activity;4.89081710080298e-05!GO:0051789;response to protein stimulus;5.48254612889462e-05!GO:0006986;response to unfolded protein;5.48254612889462e-05!GO:0035257;nuclear hormone receptor binding;5.99789884750662e-05!GO:0016023;cytoplasmic membrane-bound vesicle;6.27517321960441e-05!GO:0016310;phosphorylation;7.23470261103694e-05!GO:0005773;vacuole;7.82828546846115e-05!GO:0005769;early endosome;0.000117035817649477!GO:0048471;perinuclear region of cytoplasm;0.000127373469060487!GO:0007264;small GTPase mediated signal transduction;0.000132051986008245!GO:0008186;RNA-dependent ATPase activity;0.000142671734674444!GO:0010468;regulation of gene expression;0.000148534353315877!GO:0007243;protein kinase cascade;0.000151525747299425!GO:0042802;identical protein binding;0.000167410628689002!GO:0006099;tricarboxylic acid cycle;0.000180375914790963!GO:0046356;acetyl-CoA catabolic process;0.000180375914790963!GO:0051329;interphase of mitotic cell cycle;0.000185937872622959!GO:0003899;DNA-directed RNA polymerase activity;0.000186259804238751!GO:0006612;protein targeting to membrane;0.000188892248401431!GO:0008654;phospholipid biosynthetic process;0.00019027683997884!GO:0045454;cell redox homeostasis;0.000192515541322142!GO:0031982;vesicle;0.000205910847690839!GO:0045893;positive regulation of transcription, DNA-dependent;0.000206458674489872!GO:0005788;endoplasmic reticulum lumen;0.000209448596054502!GO:0043021;ribonucleoprotein binding;0.000213350689993313!GO:0003682;chromatin binding;0.000213500711369994!GO:0005798;Golgi-associated vesicle;0.000244064106355292!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000252083394605726!GO:0000314;organellar small ribosomal subunit;0.00025801519511594!GO:0005763;mitochondrial small ribosomal subunit;0.00025801519511594!GO:0019899;enzyme binding;0.000259579892907572!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000261024498984947!GO:0000323;lytic vacuole;0.000285648033593532!GO:0005764;lysosome;0.000285648033593532!GO:0003702;RNA polymerase II transcription factor activity;0.000305345694678236!GO:0030867;rough endoplasmic reticulum membrane;0.000313958742002221!GO:0031072;heat shock protein binding;0.000314009087398317!GO:0045941;positive regulation of transcription;0.000323512338781499!GO:0006084;acetyl-CoA metabolic process;0.000336571446238561!GO:0031410;cytoplasmic vesicle;0.000338176671503011!GO:0005657;replication fork;0.000346953855360279!GO:0065007;biological regulation;0.000361081752609395!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000386791587741985!GO:0006402;mRNA catabolic process;0.000403035153146!GO:0009117;nucleotide metabolic process;0.000411794850705194!GO:0004004;ATP-dependent RNA helicase activity;0.000423335155756836!GO:0003729;mRNA binding;0.000526138284306783!GO:0051325;interphase;0.000553635654702881!GO:0005048;signal sequence binding;0.000584940339555644!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000592813064616524!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000626246720482772!GO:0016363;nuclear matrix;0.00064102642331408!GO:0007051;spindle organization and biogenesis;0.000677046639090313!GO:0051187;cofactor catabolic process;0.000819479164875173!GO:0015631;tubulin binding;0.000821050798931562!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000904716111619901!GO:0009967;positive regulation of signal transduction;0.000924435439767332!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000930361608076702!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000945355193887223!GO:0006417;regulation of translation;0.000945779448887651!GO:0045045;secretory pathway;0.000947665473016251!GO:0032774;RNA biosynthetic process;0.000961874794146698!GO:0006891;intra-Golgi vesicle-mediated transport;0.000978093945952304!GO:0007010;cytoskeleton organization and biogenesis;0.00104987438931601!GO:0008033;tRNA processing;0.00109574622184792!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0011119913841861!GO:0048500;signal recognition particle;0.00116203160546559!GO:0006351;transcription, DNA-dependent;0.00118683496967017!GO:0009109;coenzyme catabolic process;0.00121987820185171!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00122468866798929!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00127080556347275!GO:0005885;Arp2/3 protein complex;0.00149052167607458!GO:0008234;cysteine-type peptidase activity;0.00149559464185362!GO:0065009;regulation of a molecular function;0.00154089023679829!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.001624565107063!GO:0000775;chromosome, pericentric region;0.00175549570615794!GO:0016251;general RNA polymerase II transcription factor activity;0.00178944006709219!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00179069097129758!GO:0044452;nucleolar part;0.00180496879952563!GO:0008312;7S RNA binding;0.00186522542619715!GO:0033116;ER-Golgi intermediate compartment membrane;0.00191864514638813!GO:0006352;transcription initiation;0.00193126965331535!GO:0016044;membrane organization and biogenesis;0.00206662899300274!GO:0016859;cis-trans isomerase activity;0.00208385296486153!GO:0031968;organelle outer membrane;0.00209731352884353!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00215119853207868!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00215119853207868!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00215119853207868!GO:0016491;oxidoreductase activity;0.00228867104434404!GO:0031252;leading edge;0.00231254645862837!GO:0006302;double-strand break repair;0.00232226942459961!GO:0006383;transcription from RNA polymerase III promoter;0.00235276887267439!GO:0045892;negative regulation of transcription, DNA-dependent;0.00235276887267439!GO:0051052;regulation of DNA metabolic process;0.00236042118606122!GO:0000075;cell cycle checkpoint;0.00239733862218422!GO:0008250;oligosaccharyl transferase complex;0.0024118947574577!GO:0000049;tRNA binding;0.00243884269129489!GO:0006405;RNA export from nucleus;0.00247094719607243!GO:0019867;outer membrane;0.00248054919650022!GO:0006414;translational elongation;0.00251386555538651!GO:0005874;microtubule;0.00251386555538651!GO:0006950;response to stress;0.00252976403231596!GO:0019843;rRNA binding;0.00271851715088212!GO:0043681;protein import into mitochondrion;0.00272816383245413!GO:0051101;regulation of DNA binding;0.00272816383245413!GO:0000776;kinetochore;0.00274855576341366!GO:0030036;actin cytoskeleton organization and biogenesis;0.0027501415078376!GO:0003684;damaged DNA binding;0.00284596922566584!GO:0046467;membrane lipid biosynthetic process;0.00287587569676003!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00303476452951109!GO:0008139;nuclear localization sequence binding;0.00308971569802604!GO:0051087;chaperone binding;0.00312057955990362!GO:0005741;mitochondrial outer membrane;0.00313548454280528!GO:0000059;protein import into nucleus, docking;0.00319669578838698!GO:0000786;nucleosome;0.00321777107331124!GO:0032508;DNA duplex unwinding;0.003324772987819!GO:0032392;DNA geometric change;0.003324772987819!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00334712036225971!GO:0045047;protein targeting to ER;0.00334712036225971!GO:0016197;endosome transport;0.00350201414847301!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00351642833476033!GO:0006818;hydrogen transport;0.00351642833476033!GO:0048487;beta-tubulin binding;0.00353443420156071!GO:0007088;regulation of mitosis;0.00358589738036781!GO:0005791;rough endoplasmic reticulum;0.00360429887807589!GO:0046489;phosphoinositide biosynthetic process;0.00383751696640178!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00384050734556112!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00384050734556112!GO:0008632;apoptotic program;0.00410700443326933!GO:0016853;isomerase activity;0.00429703121786392!GO:0003746;translation elongation factor activity;0.00431152600821858!GO:0051920;peroxiredoxin activity;0.00442354977306322!GO:0015992;proton transport;0.00447342343381465!GO:0006401;RNA catabolic process;0.00455008401488359!GO:0006091;generation of precursor metabolites and energy;0.00460355095456791!GO:0031326;regulation of cellular biosynthetic process;0.00464506470077058!GO:0006611;protein export from nucleus;0.00469486756540182!GO:0006672;ceramide metabolic process;0.0046961732412143!GO:0030118;clathrin coat;0.00524806599484028!GO:0019783;small conjugating protein-specific protease activity;0.00539146312983141!GO:0030134;ER to Golgi transport vesicle;0.0054518556905402!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00549685092587977!GO:0048468;cell development;0.00562882221471637!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0058906784701171!GO:0004576;oligosaccharyl transferase activity;0.00622976007339961!GO:0048518;positive regulation of biological process;0.0062673241674979!GO:0043065;positive regulation of apoptosis;0.00636228507566188!GO:0030880;RNA polymerase complex;0.00651871587855889!GO:0032200;telomere organization and biogenesis;0.00652733066250442!GO:0000723;telomere maintenance;0.00652733066250442!GO:0008637;apoptotic mitochondrial changes;0.00670233766081689!GO:0032984;macromolecular complex disassembly;0.00676670370738036!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00687415150657489!GO:0015399;primary active transmembrane transporter activity;0.00687415150657489!GO:0045449;regulation of transcription;0.00689853852078092!GO:0051252;regulation of RNA metabolic process;0.00739666552273383!GO:0003678;DNA helicase activity;0.00740046365135461!GO:0006268;DNA unwinding during replication;0.00747123105959002!GO:0005637;nuclear inner membrane;0.00757854683735165!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00777178653058808!GO:0046966;thyroid hormone receptor binding;0.00778876142232772!GO:0043624;cellular protein complex disassembly;0.00785694204447789!GO:0046474;glycerophospholipid biosynthetic process;0.00799483967718062!GO:0005684;U2-dependent spliceosome;0.00801224862804856!GO:0030132;clathrin coat of coated pit;0.00803779569102639!GO:0046519;sphingoid metabolic process;0.00808365854276705!GO:0004843;ubiquitin-specific protease activity;0.00812794778709683!GO:0030176;integral to endoplasmic reticulum membrane;0.00827793349862422!GO:0043068;positive regulation of programmed cell death;0.00836588827377134!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00863854323265582!GO:0005905;coated pit;0.00866962024976667!GO:0006984;ER-nuclear signaling pathway;0.0088178752516463!GO:0043488;regulation of mRNA stability;0.00883897944303485!GO:0043487;regulation of RNA stability;0.00883897944303485!GO:0035258;steroid hormone receptor binding;0.00887319302386779!GO:0005876;spindle microtubule;0.00889548400196688!GO:0008094;DNA-dependent ATPase activity;0.0090806356487215!GO:0006289;nucleotide-excision repair;0.00932987948462736!GO:0006892;post-Golgi vesicle-mediated transport;0.00955743035708319!GO:0004674;protein serine/threonine kinase activity;0.00959911162774004!GO:0016741;transferase activity, transferring one-carbon groups;0.00985474032245954!GO:0051098;regulation of binding;0.0100955971953199!GO:0000086;G2/M transition of mitotic cell cycle;0.0102486563594232!GO:0006376;mRNA splice site selection;0.010384190036038!GO:0000389;nuclear mRNA 3'-splice site recognition;0.010384190036038!GO:0007017;microtubule-based process;0.011348323159176!GO:0007265;Ras protein signal transduction;0.011845848471507!GO:0006626;protein targeting to mitochondrion;0.0120349031015445!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0120349031015445!GO:0000428;DNA-directed RNA polymerase complex;0.0120349031015445!GO:0030663;COPI coated vesicle membrane;0.0120698105577357!GO:0030126;COPI vesicle coat;0.0120698105577357!GO:0008092;cytoskeletal protein binding;0.0122255537458309!GO:0043241;protein complex disassembly;0.0124268451680829!GO:0008168;methyltransferase activity;0.0126876652169618!GO:0018196;peptidyl-asparagine modification;0.0130594992549332!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0130594992549332!GO:0030384;phosphoinositide metabolic process;0.0130631234171471!GO:0000781;chromosome, telomeric region;0.0133046728429146!GO:0030658;transport vesicle membrane;0.0133046728429146!GO:0006310;DNA recombination;0.0137309059853395!GO:0016584;nucleosome positioning;0.0137442145029969!GO:0043022;ribosome binding;0.014007949475141!GO:0006284;base-excision repair;0.014007949475141!GO:0005149;interleukin-1 receptor binding;0.0141987664497335!GO:0008017;microtubule binding;0.0142525813173829!GO:0009889;regulation of biosynthetic process;0.0142755674111779!GO:0005832;chaperonin-containing T-complex;0.0144349549818872!GO:0030521;androgen receptor signaling pathway;0.0145627112696921!GO:0006650;glycerophospholipid metabolic process;0.0147786133676136!GO:0003725;double-stranded RNA binding;0.0150640081056139!GO:0004221;ubiquitin thiolesterase activity;0.0151519885137448!GO:0015980;energy derivation by oxidation of organic compounds;0.0152842707305397!GO:0007006;mitochondrial membrane organization and biogenesis;0.0158076246106149!GO:0022890;inorganic cation transmembrane transporter activity;0.0161914035203923!GO:0030029;actin filament-based process;0.0163799311236582!GO:0006275;regulation of DNA replication;0.0163901091128795!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0164576017271443!GO:0006839;mitochondrial transport;0.016852026412162!GO:0031902;late endosome membrane;0.0168531820385351!GO:0003711;transcription elongation regulator activity;0.017347601154209!GO:0005869;dynactin complex;0.017347601154209!GO:0030127;COPII vesicle coat;0.0174380275668621!GO:0012507;ER to Golgi transport vesicle membrane;0.0174380275668621!GO:0001726;ruffle;0.0174380275668621!GO:0050662;coenzyme binding;0.0176200736666308!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0178216780384264!GO:0015002;heme-copper terminal oxidase activity;0.0178216780384264!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0178216780384264!GO:0004129;cytochrome-c oxidase activity;0.0178216780384264!GO:0030133;transport vesicle;0.017924722471878!GO:0000209;protein polyubiquitination;0.0179463712239229!GO:0009303;rRNA transcription;0.0188401697601204!GO:0007004;telomere maintenance via telomerase;0.0189191902424269!GO:0030119;AP-type membrane coat adaptor complex;0.0190603057330615!GO:0005669;transcription factor TFIID complex;0.0190863746686523!GO:0000792;heterochromatin;0.019186096898652!GO:0046983;protein dimerization activity;0.0196505850570527!GO:0030131;clathrin adaptor complex;0.0197338651642706!GO:0046483;heterocycle metabolic process;0.0200533713716993!GO:0009112;nucleobase metabolic process;0.0203362275630224!GO:0008629;induction of apoptosis by intracellular signals;0.0205138973581308!GO:0040029;regulation of gene expression, epigenetic;0.0218238996108366!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0218265299576386!GO:0016272;prefoldin complex;0.0218284571354803!GO:0009116;nucleoside metabolic process;0.0218408074883235!GO:0043492;ATPase activity, coupled to movement of substances;0.0220297427722864!GO:0008180;signalosome;0.0220356831841111!GO:0031625;ubiquitin protein ligase binding;0.022039221062389!GO:0006607;NLS-bearing substrate import into nucleus;0.0221285685359479!GO:0030968;unfolded protein response;0.0221723524033097!GO:0030433;ER-associated protein catabolic process;0.0223141821385752!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0223141821385752!GO:0016791;phosphoric monoester hydrolase activity;0.0223336680019986!GO:0007093;mitotic cell cycle checkpoint;0.0223345182565142!GO:0004518;nuclease activity;0.0223843961833155!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0235713811323745!GO:0006355;regulation of transcription, DNA-dependent;0.023851217547047!GO:0006739;NADP metabolic process;0.0241819184476652!GO:0006506;GPI anchor biosynthetic process;0.0241893724099534!GO:0006497;protein amino acid lipidation;0.0241893724099534!GO:0030137;COPI-coated vesicle;0.0241893724099534!GO:0008022;protein C-terminus binding;0.0241893724099534!GO:0051540;metal cluster binding;0.0245132512561028!GO:0051536;iron-sulfur cluster binding;0.0245132512561028!GO:0006740;NADPH regeneration;0.025444674138506!GO:0006098;pentose-phosphate shunt;0.025444674138506!GO:0051128;regulation of cellular component organization and biogenesis;0.0258050465212229!GO:0007052;mitotic spindle organization and biogenesis;0.0258153090330245!GO:0008538;proteasome activator activity;0.0261559023422922!GO:0050790;regulation of catalytic activity;0.0266662925807712!GO:0043596;nuclear replication fork;0.026764098504186!GO:0007050;cell cycle arrest;0.0271808096908568!GO:0017166;vinculin binding;0.0277205398899091!GO:0006505;GPI anchor metabolic process;0.0278474577373373!GO:0031529;ruffle organization and biogenesis;0.0278506088489099!GO:0043433;negative regulation of transcription factor activity;0.0279542596135294!GO:0008097;5S rRNA binding;0.0283765641231705!GO:0031124;mRNA 3'-end processing;0.0286760384291001!GO:0051059;NF-kappaB binding;0.0287556366930652!GO:0009451;RNA modification;0.0288768867883083!GO:0042026;protein refolding;0.029388716042471!GO:0001889;liver development;0.0296342265141841!GO:0016311;dephosphorylation;0.0300893979370596!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0306931122063273!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0311327033018376!GO:0046822;regulation of nucleocytoplasmic transport;0.0314582648401493!GO:0006643;membrane lipid metabolic process;0.0315480007165782!GO:0030660;Golgi-associated vesicle membrane;0.0315480007165782!GO:0007059;chromosome segregation;0.0315670931836336!GO:0000228;nuclear chromosome;0.0318319601125373!GO:0016790;thiolester hydrolase activity;0.0319551544679178!GO:0006338;chromatin remodeling;0.0329560747010748!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0334010091499236!GO:0007030;Golgi organization and biogenesis;0.0336846131361495!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0337313537966425!GO:0000922;spindle pole;0.0344257148369756!GO:0000082;G1/S transition of mitotic cell cycle;0.0344688408016861!GO:0051338;regulation of transferase activity;0.0348496663608419!GO:0008426;protein kinase C inhibitor activity;0.034854220135358!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0349539998761227!GO:0006144;purine base metabolic process;0.0350088663494304!GO:0009165;nucleotide biosynthetic process;0.035195715762303!GO:0032259;methylation;0.0352645846224876!GO:0032507;maintenance of cellular protein localization;0.0353013972509473!GO:0047485;protein N-terminus binding;0.0353637715377611!GO:0019834;phospholipase A2 inhibitor activity;0.0356277651627222!GO:0005784;translocon complex;0.0356416838365519!GO:0022415;viral reproductive process;0.0365077219051325!GO:0005774;vacuolar membrane;0.0371041624278775!GO:0008287;protein serine/threonine phosphatase complex;0.0372476537515487!GO:0004527;exonuclease activity;0.0372535574204967!GO:0031901;early endosome membrane;0.037802481989983!GO:0032940;secretion by cell;0.0380960353235873!GO:0001836;release of cytochrome c from mitochondria;0.038148706906114!GO:0043414;biopolymer methylation;0.0391833427679228!GO:0009893;positive regulation of metabolic process;0.03958853410707!GO:0043189;H4/H2A histone acetyltransferase complex;0.0397170003305668!GO:0030518;steroid hormone receptor signaling pathway;0.040164109209997!GO:0031970;organelle envelope lumen;0.0406727624853587!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0407206669650109!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0407206669650109!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0407674879860123!GO:0030911;TPR domain binding;0.0408856927303515!GO:0051287;NAD binding;0.0418370924890827!GO:0048144;fibroblast proliferation;0.0418370924890827!GO:0048145;regulation of fibroblast proliferation;0.0418370924890827!GO:0017134;fibroblast growth factor binding;0.0419000273962934!GO:0048146;positive regulation of fibroblast proliferation;0.042383296291678!GO:0008652;amino acid biosynthetic process;0.0425921195428348!GO:0000096;sulfur amino acid metabolic process;0.0428079730697117!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0428079730697117!GO:0010257;NADH dehydrogenase complex assembly;0.0428079730697117!GO:0033108;mitochondrial respiratory chain complex assembly;0.0428079730697117!GO:0042770;DNA damage response, signal transduction;0.0428079730697117!GO:0004721;phosphoprotein phosphatase activity;0.0432482900618918!GO:0003677;DNA binding;0.0434577637960376!GO:0050811;GABA receptor binding;0.0436941498667463!GO:0035267;NuA4 histone acetyltransferase complex;0.0441154877568181!GO:0000123;histone acetyltransferase complex;0.0441896601397652!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0461306672991466!GO:0006509;membrane protein ectodomain proteolysis;0.0471360241988961!GO:0033619;membrane protein proteolysis;0.0471360241988961!GO:0008601;protein phosphatase type 2A regulator activity;0.0478746260734499!GO:0007242;intracellular signaling cascade;0.0481082096022147!GO:0030659;cytoplasmic vesicle membrane;0.0485120815154611!GO:0022408;negative regulation of cell-cell adhesion;0.0485682567649871!GO:0031399;regulation of protein modification process;0.0485682567649871!GO:0007034;vacuolar transport;0.0489532524460346!GO:0022411;cellular component disassembly;0.0490386102547934!GO:0006541;glutamine metabolic process;0.0491203702688309
|sample_id=10463
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=esophagus
|top_motifs=ZEB1:2.11632970669;SNAI1..3:1.81288760321;TBX4,5:1.46474152533;PDX1:1.39638391255;ADNP_IRX_SIX_ZHX:1.32146692005;FOXA2:1.31307792932;NKX2-1,4:1.22930672823;NKX6-1,2:1.21085825952;ZBTB16:1.16125657248;FOXQ1:1.15726801996;TP53:1.15651057833;FOX{I1,J2}:1.12728654911;VSX1,2:1.08143636679;TEF:1.01815218224;POU1F1:0.98053588891;FOXL1:0.958499563467;HOX{A6,A7,B6,B7}:0.886433012956;NR6A1:0.878320894272;RBPJ:0.87561427712;MYOD1:0.8634871054;PITX1..3:0.834077526425;NKX2-3_NKX2-5:0.810145476994;LMO2:0.806367443829;STAT5{A,B}:0.762105618548;BPTF:0.743967546731;ONECUT1,2:0.719387512988;ELK1,4_GABP{A,B1}:0.708409883247;IRF7:0.705393217912;CDX1,2,4:0.681547034238;AIRE:0.66107015773;FOXP1:0.646996052573;CDC5L:0.63753442324;bHLH_family:0.631822585193;ATF2:0.629087345611;ZNF384:0.612393065545;NANOG:0.579402522025;SP1:0.548802302995;FOXM1:0.53184349269;HSF1,2:0.520016035863;CEBPA,B_DDIT3:0.51555702118;POU2F1..3:0.465413953226;MYBL2:0.422677269231;FOXO1,3,4:0.402129711904;ARID5B:0.399115975304;IKZF1:0.365617371284;E2F1..5:0.33671804472;FOS_FOS{B,L1}_JUN{B,D}:0.326857080855;NKX2-2,8:0.320792521117;NFE2:0.32017693663;ALX1:0.307139035288;IKZF2:0.302846654983;SOX17:0.293106467955;OCT4_SOX2{dimer}:0.288689330892;FOX{F1,F2,J1}:0.285899812379;NR5A1,2:0.262080771345;ATF5_CREB3:0.23799317318;HIF1A:0.236274234573;POU5F1:0.22183916679;PBX1:0.21997796698;NFIL3:0.212380598541;ATF4:0.205428278922;YY1:0.203901050882;SOX2:0.190985475363;TBP:0.190835264867;IRF1,2:0.180810372171;LHX3,4:0.179298712192;ZNF143:0.174062707982;NKX3-1:0.16892578259;ELF1,2,4:0.167116346057;NR1H4:0.157869482932;GLI1..3:0.154870764402;HLF:0.154068695531;NFE2L2:0.150921719457;PAX2:0.150464171144;NFKB1_REL_RELA:0.127360363089;FOXN1:0.120928207641;NFY{A,B,C}:0.103034831903;TFDP1:0.0991515937912;NFIX:0.0857258665027;NRF1:0.0788870442731;TEAD1:0.0783165095076;HMGA1,2:0.069303665052;HOX{A4,D4}:0.0655658716935;FOX{D1,D2}:0.060316474115;FOSL2:0.0399575410055;TFAP2{A,C}:0.0309905583534;POU6F1:0.0266137775532;TFAP2B:0.0257168935274;EN1,2:0.0115343398837;GFI1B:0.00740367686685;CRX:0.00378744957238;TOPORS:0.00195970752016;ZNF423:-0.00945750203581;TLX1..3_NFIC{dimer}:-0.016771411729;BACH2:-0.0577458794645;PPARG:-0.0613399913959;STAT2,4,6:-0.0673480766824;HBP1_HMGB_SSRP1_UBTF:-0.0712004860053;RFX2..5_RFXANK_RFXAP:-0.0718240128183;XCPE1{core}:-0.0803237599552;HNF1A:-0.0920473332125;NKX3-2:-0.0935192666094;MEF2{A,B,C,D}:-0.0985945262973;PATZ1:-0.106371070042;PAX8:-0.106392950296;ZNF148:-0.11511055263;EP300:-0.128249609096;PAX6:-0.130944822593;HOXA9_MEIS1:-0.137356069102;PAX1,9:-0.140614111476;DMAP1_NCOR{1,2}_SMARC:-0.145206109557;ZIC1..3:-0.146962510809;RFX1:-0.152848841727;MED-1{core}:-0.153011526792;MYB:-0.160940374609;BREu{core}:-0.175911776074;PAX4:-0.179200015412;REST:-0.180576528843;GATA6:-0.19116798776;HIC1:-0.192088688305;ZFP161:-0.196098771884;TFCP2:-0.201509151476;DBP:-0.232251289354;MTE{core}:-0.235835455279;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.247582607988;MTF1:-0.248961959825;PRRX1,2:-0.265007083405;CREB1:-0.267896015537;FOXP3:-0.276726370282;HAND1,2:-0.282701461909;AHR_ARNT_ARNT2:-0.285329289573;KLF4:-0.289219445105;LEF1_TCF7_TCF7L1,2:-0.289259736476;SOX{8,9,10}:-0.345213906813;HOX{A5,B5}:-0.347378879912;GTF2I:-0.349520499486;JUN:-0.351675953133;PAX3,7:-0.371288122109;MAZ:-0.378293709731;CUX2:-0.388664534509;ESR1:-0.399904247967;HNF4A_NR2F1,2:-0.415291166066;EGR1..3:-0.422400796239;RORA:-0.446311925049;UFEwm:-0.497268532014;GTF2A1,2:-0.518017970274;ETS1,2:-0.522478961841;GFI1:-0.535398865733;SPI1:-0.555320297488;RREB1:-0.577918950952;GZF1:-0.589703453023;SREBF1,2:-0.600558921149;PRDM1:-0.605283445956;TLX2:-0.608079516757;SOX5:-0.619747942978;ZNF238:-0.629260942199;SPIB:-0.634874556612;ALX4:-0.651134525871;MYFfamily:-0.658443029434;EBF1:-0.659632960409;ATF6:-0.668667996207;STAT1,3:-0.683906160968;AR:-0.687767283579;PAX5:-0.688072021303;ZBTB6:-0.691676363002;T:-0.720874101015;TAL1_TCF{3,4,12}:-0.731072717326;RUNX1..3:-0.760993106158;FOXD3:-0.801082578204;XBP1:-0.831354975664;POU3F1..4:-0.841252952729;EVI1:-0.862933490453;RXR{A,B,G}:-0.882886052148;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.888606083492;NHLH1,2:-0.905483316406;NFE2L1:-0.953461279716;SRF:-0.993153282105;NANOG{mouse}:-1.00531234156;GATA4:-1.02013307661;TGIF1:-1.03740937572;HES1:-1.06533478966;TFAP4:-1.14333038875;GCM1,2:-1.18517770007;NR3C1:-1.18790211219;MAFB:-1.21210664937;NFATC1..3:-1.28281291576;SMAD1..7,9:-1.28602254041;RXRA_VDR{dimer}:-1.31479798857;MZF1:-1.35282165234;HMX1:-1.68343625723;ESRRA:-1.70364408566;SPZ1:-2.30969467394
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10463-106H4;search_select_hide=table117:FF:10463-106H4
}}
}}

Latest revision as of 14:03, 3 June 2020

Name:squamous cell carcinoma cell line:EC-GI-10
Species:Human (Homo sapiens)
Library ID:CNhs11252
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueesophagus
dev stageNA
sexmale
age65
cell typeunclassifiable
cell lineEC-GI-10
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005462
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11252 CAGE DRX008014 DRR008886
Accession ID Hg19

Library idBAMCTSS
CNhs11252 DRZ000311 DRZ001696
Accession ID Hg38

Library idBAMCTSS
CNhs11252 DRZ011661 DRZ013046
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0539
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.158
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0382
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.154
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0432
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.133
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.123
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.186
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.708
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.0713
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.29
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.0713
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-2.427999e-4
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0105
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.11
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0713
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11252

Jaspar motifP-value
MA0002.20.0021
MA0003.10.308
MA0004.10.764
MA0006.10.216
MA0007.10.85
MA0009.10.139
MA0014.10.0283
MA0017.10.704
MA0018.20.904
MA0019.10.547
MA0024.10.154
MA0025.10.334
MA0027.10.717
MA0028.10.00199
MA0029.10.884
MA0030.10.00271
MA0031.10.0759
MA0035.20.157
MA0038.10.265
MA0039.23.64803e-4
MA0040.10.429
MA0041.10.639
MA0042.10.58
MA0043.10.384
MA0046.10.9
MA0047.20.00834
MA0048.10.309
MA0050.10.0155
MA0051.10.00656
MA0052.10.034
MA0055.14.13523e-4
MA0057.10.791
MA0058.10.655
MA0059.10.791
MA0060.10.0628
MA0061.10.732
MA0062.20.0153
MA0065.20.629
MA0066.10.413
MA0067.10.945
MA0068.10.00819
MA0069.10.337
MA0070.10.91
MA0071.10.213
MA0072.10.596
MA0073.10.807
MA0074.10.785
MA0076.10.00668
MA0077.10.269
MA0078.10.73
MA0079.20.945
MA0080.22.88567e-5
MA0081.10.00327
MA0083.10.055
MA0084.10.482
MA0087.10.715
MA0088.10.148
MA0090.10.561
MA0091.10.00511
MA0092.10.235
MA0093.10.825
MA0099.20.0381
MA0100.10.556
MA0101.10.371
MA0102.20.294
MA0103.19.82341e-10
MA0104.20.885
MA0105.10.0057
MA0106.10.00258
MA0107.10.521
MA0108.20.949
MA0111.10.597
MA0112.20.956
MA0113.10.0638
MA0114.10.459
MA0115.11
MA0116.10.138
MA0117.10.454
MA0119.10.205
MA0122.10.731
MA0124.10.352
MA0125.10.138
MA0131.10.683
MA0135.10.111
MA0136.10.00184
MA0137.20.349
MA0138.20.201
MA0139.10.289
MA0140.10.322
MA0141.10.653
MA0142.10.0907
MA0143.10.925
MA0144.10.337
MA0145.10.548
MA0146.10.485
MA0147.10.659
MA0148.11.86389e-4
MA0149.10.0329
MA0150.10.162
MA0152.10.539
MA0153.10.929
MA0154.10.0383
MA0155.10.139
MA0156.10.349
MA0157.10.324
MA0159.10.0133
MA0160.10.762
MA0162.10.885
MA0163.10.0908
MA0164.10.749
MA0258.10.612
MA0259.10.85



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11252

Novel motifP-value
10.706
100.73
1000.235
1010.425
1020.53
1030.879
1040.446
1050.214
1060.874
1070.3
1080.479
1090.0529
110.638
1100.896
1110.922
1120.826
1130.444
1140.324
1150.638
1160.313
1170.133
1180.954
1190.321
120.101
1200.933
1210.695
1220.46
1230.527
1240.15
1250.723
1260.331
1270.687
1280.416
1290.539
130.00287
1300.639
1310.177
1320.809
1330.0111
1340.0558
1350.075
1360.0552
1370.0186
1380.698
1390.2
140.748
1400.732
1410.606
1420.769
1430.0375
1440.235
1450.905
1460.849
1470.183
1480.601
1490.0976
150.946
1500.234
1510.801
1520.185
1530.716
1540.188
1550.226
1560.97
1570.86
1580.262
1590.44
160.933
1600.166
1610.501
1620.781
1630.46
1640.464
1650.739
1660.904
1670.514
1680.965
1690.523
170.317
180.544
190.111
20.644
200.0627
210.235
220.341
230.68
240.356
250.645
260.727
270.333
280.263
290.159
30.76
300.715
310.232
320.00299
330.371
340.309
350.126
360.383
370.907
380.957
390.304
40.718
400.116
410.00538
420.272
430.434
440.887
450.865
460.585
470.826
480.517
490.129
50.754
500.338
510.941
520.802
530.845
540.882
550.919
560.781
570.23
580.833
590.147
60.544
600.739
610.183
620.541
630.471
640.689
650.452
660.0247
670.629
680.0576
690.488
70.791
700.0351
710.777
720.565
730.403
740.0637
750.32
760.4
770.733
780.201
790.109
80.55
800.0385
810.233
820.0559
830.945
840.717
850.4
860.505
870.0458
880.483
890.537
90.144
900.79
910.11
920.155
930.493
940.245
950.326
960.371
970.984
980.0787
990.692



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11252


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
1749 (squamous cell carcinoma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0101120 (epithelial cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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