FF:10490-107B4: Difference between revisions

Latest revision as of 14:27, 3 June 2020

Name:	prostate cancer cell line:DU145
Species:	Human (Homo sapiens)
Library ID:	CNhs11260
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	prostate
dev stage	NA
sex	male
age	69
cell type	unclassifiable
cell line	DU145
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005339

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11260		CAGE		DRX007987		DRR008859

Accession ID Hg19

Library id		BAM		CTSS
CNhs11260		DRZ000284		DRZ001669

Accession ID Hg38

Library id		BAM		CTSS
CNhs11260		DRZ011634		DRZ013019

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.104
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.543
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0.0485
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	2.950206e-4
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.104
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.319
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.124
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.085
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.168
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.132
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.00418
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0163
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0399
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.496
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0485
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0485
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11260

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0102
MA0003.1	MA0003.1	0.957
MA0004.1	MA0004.1	0.658
MA0006.1	MA0006.1	0.868
MA0007.1	MA0007.1	0.813
MA0009.1	MA0009.1	0.247
MA0014.1	MA0014.1	0.0549
MA0017.1	MA0017.1	0.41
MA0018.2	MA0018.2	0.696
MA0019.1	MA0019.1	0.761
MA0024.1	MA0024.1	5.52591e-5
MA0025.1	MA0025.1	0.969
MA0027.1	MA0027.1	0.713
MA0028.1	MA0028.1	1.95225e-4
MA0029.1	MA0029.1	0.522
MA0030.1	MA0030.1	0.109
MA0031.1	MA0031.1	0.776
MA0035.2	MA0035.2	0.475
MA0038.1	MA0038.1	0.018
MA0039.2	MA0039.2	5.31853e-4
MA0040.1	MA0040.1	0.417
MA0041.1	MA0041.1	0.307
MA0042.1	MA0042.1	0.266
MA0043.1	MA0043.1	0.4
MA0046.1	MA0046.1	0.00219
MA0047.2	MA0047.2	0.808
MA0048.1	MA0048.1	0.153
MA0050.1	MA0050.1	0.00539
MA0051.1	MA0051.1	0.562
MA0052.1	MA0052.1	0.0285
MA0055.1	MA0055.1	1.42046e-4
MA0057.1	MA0057.1	0.5
MA0058.1	MA0058.1	0.637
MA0059.1	MA0059.1	0.621
MA0060.1	MA0060.1	1.0596e-7
MA0061.1	MA0061.1	0.0136
MA0062.2	MA0062.2	7.94371e-4
MA0065.2	MA0065.2	0.311
MA0066.1	MA0066.1	0.303
MA0067.1	MA0067.1	0.827
MA0068.1	MA0068.1	0.00307
MA0069.1	MA0069.1	0.535
MA0070.1	MA0070.1	0.921
MA0071.1	MA0071.1	0.634
MA0072.1	MA0072.1	0.857
MA0073.1	MA0073.1	0.942
MA0074.1	MA0074.1	0.874
MA0076.1	MA0076.1	4.45766e-4
MA0077.1	MA0077.1	0.918
MA0078.1	MA0078.1	0.322
MA0079.2	MA0079.2	0.723
MA0080.2	MA0080.2	2.42967e-9
MA0081.1	MA0081.1	0.54
MA0083.1	MA0083.1	0.0737
MA0084.1	MA0084.1	0.262
MA0087.1	MA0087.1	0.243
MA0088.1	MA0088.1	0.217
MA0090.1	MA0090.1	0.363
MA0091.1	MA0091.1	5.13137e-4
MA0092.1	MA0092.1	0.159
MA0093.1	MA0093.1	0.764
MA0099.2	MA0099.2	0.312
MA0100.1	MA0100.1	0.188
MA0101.1	MA0101.1	0.504
MA0102.2	MA0102.2	0.584
MA0103.1	MA0103.1	0.00208
MA0104.2	MA0104.2	0.316
MA0105.1	MA0105.1	1.3659e-4
MA0106.1	MA0106.1	0.731
MA0107.1	MA0107.1	0.165
MA0108.2	MA0108.2	0.0754
MA0111.1	MA0111.1	0.684
MA0112.2	MA0112.2	0.211
MA0113.1	MA0113.1	0.0689
MA0114.1	MA0114.1	0.425
MA0115.1	MA0115.1	0.233
MA0116.1	MA0116.1	0.0294
MA0117.1	MA0117.1	0.322
MA0119.1	MA0119.1	0.116
MA0122.1	MA0122.1	0.864
MA0124.1	MA0124.1	0.942
MA0125.1	MA0125.1	0.204
MA0131.1	MA0131.1	0.213
MA0135.1	MA0135.1	0.6
MA0136.1	MA0136.1	3.80474e-4
MA0137.2	MA0137.2	0.217
MA0138.2	MA0138.2	0.0231
MA0139.1	MA0139.1	0.0324
MA0140.1	MA0140.1	0.992
MA0141.1	MA0141.1	0.832
MA0142.1	MA0142.1	0.418
MA0143.1	MA0143.1	0.0298
MA0144.1	MA0144.1	0.663
MA0145.1	MA0145.1	0.402
MA0146.1	MA0146.1	0.688
MA0147.1	MA0147.1	0.339
MA0148.1	MA0148.1	0.772
MA0149.1	MA0149.1	0.0266
MA0150.1	MA0150.1	0.36
MA0152.1	MA0152.1	0.534
MA0153.1	MA0153.1	1.47146e-4
MA0154.1	MA0154.1	0.00498
MA0155.1	MA0155.1	0.374
MA0156.1	MA0156.1	0.384
MA0157.1	MA0157.1	0.286
MA0159.1	MA0159.1	0.833
MA0160.1	MA0160.1	0.9
MA0162.1	MA0162.1	0.715
MA0163.1	MA0163.1	0.17
MA0164.1	MA0164.1	0.536
MA0258.1	MA0258.1	0.212
MA0259.1	MA0259.1	0.493

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11260

Novel motif	Logo	P-value
1	1	0.662
10	10	0.744
100	100	0.0908
101	101	0.237
102	102	0.552
103	103	0.84
104	104	0.411
105	105	0.818
106	106	2.98872e-5
107	107	0.152
108	108	0.653
109	109	0.249
11	11	0.387
110	110	0.697
111	111	0.891
112	112	0.056
113	113	0.0111
114	114	0.191
115	115	0.718
116	116	0.777
117	117	0.576
118	118	0.934
119	119	0.121
12	12	0.794
120	120	0.459
121	121	0.708
122	122	0.868
123	123	0.163
124	124	0.0505
125	125	0.271
126	126	0.605
127	127	0.539
128	128	3.26293e-4
129	129	0.338
13	13	0.0582
130	130	0.615
131	131	0.102
132	132	0.709
133	133	0.147
134	134	0.737
135	135	0.0129
136	136	0.0153
137	137	0.239
138	138	0.974
139	139	0.0061
14	14	0.642
140	140	0.00297
141	141	0.529
142	142	0.632
143	143	0.00485
144	144	0.305
145	145	0.392
146	146	0.331
147	147	0.661
148	148	0.509
149	149	0.0574
15	15	0.411
150	150	0.497
151	151	0.195
152	152	0.492
153	153	0.158
154	154	0.448
155	155	0.791
156	156	0.972
157	157	0.32
158	158	0.357
159	159	0.389
16	16	0.631
160	160	0.5
161	161	0.808
162	162	0.379
163	163	0.936
164	164	0.401
165	165	0.931
166	166	0.526
167	167	0.896
168	168	0.232
169	169	0.422
17	17	0.262
18	18	0.054
19	19	0.0744
2	2	0.315
20	20	0.048
21	21	0.296
22	22	0.247
23	23	0.0129
24	24	0.992
25	25	0.556
26	26	0.763
27	27	0.0964
28	28	0.598
29	29	0.805
3	3	0.291
30	30	0.991
31	31	0.205
32	32	0.0612
33	33	0.261
34	34	0.483
35	35	0.14
36	36	0.193
37	37	0.708
38	38	0.863
39	39	0.683
4	4	0.867
40	40	0.0183
41	41	0.0538
42	42	0.57
43	43	0.122
44	44	0.767
45	45	0.419
46	46	0.086
47	47	0.811
48	48	0.99
49	49	0.136
5	5	0.103
50	50	0.571
51	51	0.317
52	52	0.14
53	53	0.166
54	54	0.446
55	55	0.23
56	56	0.45
57	57	0.633
58	58	0.199
59	59	0.118
6	6	0.642
60	60	0.0517
61	61	0.276
62	62	0.0788
63	63	0.802
64	64	0.7
65	65	0.132
66	66	0.0628
67	67	0.985
68	68	0.536
69	69	0.469
7	7	0.863
70	70	0.0264
71	71	0.553
72	72	0.218
73	73	0.986
74	74	0.254
75	75	0.826
76	76	0.608
77	77	0.497
78	78	0.646
79	79	0.0914
8	8	0.385
80	80	0.0825
81	81	0.206
82	82	0.0065
83	83	0.36
84	84	0.911
85	85	0.00877
86	86	0.494
87	87	0.161
88	88	0.731
89	89	0.255
9	9	0.0694
90	90	0.399
91	91	0.0785
92	92	0.0625
93	93	0.456
94	94	0.0178
95	95	0.233
96	96	0.2
97	97	0.798
98	98	0.228
99	99	0.975

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11260

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101332 DU-145 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002367 (prostate gland)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002530 (gland)
0010147 (male accessory sex gland)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0101019 (prostate gland cell line sample)
0101033 (prostate cancer cell line sample)
0101332 (DU-145 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0009847 (prostate field)
UBERON:0003353 (epithelium of hindgut)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002367,UBERON:0002100,UBERON:0000483,UBERON:0002530,UBERON:0000926,UBERON:0000479,UBERON:0001007,UBERON:0005156,UBERON:0000077,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0006554,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0000990,UBERON:0002050,UBERON:0005153,UBERON:0005911,UBERON:0004921,UBERON:0000161,UBERON:0000162,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0005291,UBERON:0003102,UBERON:0003929,UBERON:0003104,UBERON:0010147,UBERON:0005256,UBERON:0000925,UBERON:0006598,UBERON:0009846,UBERON:0004185,UBERON:0005157,UBERON:0003937,UBERON:0005399,UBERON:0002532,UBERON:0003353,UBERON:0004902,UBERON:0001555,UBERON:0001008,UBERON:0003101,UBERON:0004122,UBERON:0001353,UBERON:0000163,UBERON:0000079,UBERON:0007026,UBERON:0006866,UBERON:0009142,UBERON:0001046,UBERON:0000164,UBERON:0003064,UBERON:0006595,UBERON:0006603,UBERON:0000931,UBERON:0003820,UBERON:0009847
+|DRA_sample_Accession=CAGE@SAMD00005339
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000012,CL:0000063,CL:0000066,CL:0000004,CL:0000255
+|accession_numbers=CAGE;DRX007987;DRR008859;DRZ000284;DRZ001669;DRZ011634;DRZ013019
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
 |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0101019,FF:0101033,FF:0101332
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr14:38064429..38064486,-!p1@FOXA1!1.67!45.27!FOXA1;;chr1:201979743..201979762,+!p1@ELF3!1.62!41.13!ELF3;;chr6:10412600..10412637,-!p1@TFAP2A!1.59!62.29!TFAP2A;;chr11:120107344..120107351,+!p1@POU2F3!1.56!42.79!POU2F3;;chr6:10412392..10412409,-!p4@TFAP2A!1.45!30.73!TFAP2A;;chr5:134369905..134369972,-!p1@PITX1!1.43!39.12!PITX1;;chr1:201979703..201979721,+!p2@ELF3!1.39!23.52!ELF3;;chr6:126240380..126240430,+!p2@NCOA7!1.29!47.51!NCOA7;;chr14:36989427..36989442,-!p1@NKX2-1!1.27!17.61!NKX2-1;;chr5:134369879..134369898,-!p2@PITX1!1.26!17.26!PITX1;;chr6:126240442..126240459,+!p4@NCOA7!1.19!18.32!NCOA7;;chr17:46682321..46682362,-!p1@HOXB6!1.18!14.30!HOXB6;;chr14:36989358..36989378,-!p3@NKX2-1!1.16!13.47!NKX2-1;;chrY:21906594..21906622,-!p1@KDM5D!1.12!12.17!KDM5D;;chr8:67525443..67525459,-!p2@MYBL1!1.07!16.19!MYBL1;;chrY:2803415..2803468,+!p1@ZFY!1.07!10.64!ZFY;;chr15:83953397..83953425,-!p1@BNC1!1.06!12.06!BNC1;;chr3:69811882..69811898,+!p6@MITF!1.05!10.16!MITF;;chr6:126240356..126240379,+!p7@NCOA7!1.04!12.29!NCOA7;;chr3:69811858..69811881,+!p5@MITF!1.03!9.81!MITF;;chr6:10415276..10415341,-!p2@TFAP2A!1.01!11.23!TFAP2A;;chr3:147111198..147111225,+!p4@ZIC1!0.99!8.75!ZIC1;;chr6:126240463..126240489,+!p6@NCOA7!0.97!9.34!NCOA7;;chr19:9609272..9609297,-!p1@ZNF560!0.97!8.39!ZNF560;;chr14:36989336..36989354,-!p5@NKX2-1!0.97!8.39!NKX2-1;;chr7:27153454..27153469,-!p2@HOXA3!0.97!8.27!HOXA3;;chr20:55204351..55204377,+!p1@TFAP2C!0.96!10.40!TFAP2C;;chr17:46690839..46690884,-!p1@HOXB8!0.94!7.80!HOXB8;;chr14:36989940..36989957,-!p2@NKX2-1!0.93!7.45!NKX2-1;;chr12:52445218..52445237,+!p1@NR4A1!0.92!95.74!NR4A1;;chr15:67418119..67418162,+!p5@SMAD3!0.91!8.04!SMAD3;;chr6:10412576..10412599,-!p5@TFAP2A!0.90!6.86!TFAP2A;;chr6:10412477..10412490,-!p10@TFAP2A!0.85!6.15!TFAP2A;;chr14:36989379..36989390,-!p8@NKX2-1!0.85!6.15!NKX2-1;;chr3:141087339..141087387,+!p2@ZBTB38!0.83!63.00!ZBTB38;;chr17:8027418..8027432,-!p1@HES7!0.83!5.79!HES7;;chr7:27135591..27135658,-!p1@HOXA1!0.82!11.35!HOXA1;;chr11:65667884..65667895,-!p2@FOSL1!0.81!22.46!FOSL1;;chr2:46524897..46524911,+!p2@EPAS1!0.81!16.19!EPAS1;;chr1:44513995..44514031,+!p1@KLF17!0.81!5.44!KLF17;;chr17:40477163..40477183,-!p7@STAT3!0.81!5.44!STAT3;;chr20:42295713..42295738,+!p2@MYBL2!0.79!33.45!MYBL2;;chr10:51572408..51572454,+!p3@NCOA4!0.79!32.50!NCOA4;;chr15:67418047..67418093,+!p4@SMAD3!0.79!6.74!SMAD3;;chr5:142780237..142780261,-!p7@NR3C1!0.77!4.85!NR3C1;;chr17:46688334..46688385,-!p1@HOXB7!0.76!7.09!HOXB7;;chr2:191906489..191906517,-!p6@STAT4!0.76!4.73!STAT4;;chr8:67525473..67525518,-!p1@MYBL1!0.75!11.35!MYBL1;;chr5:72744445..72744466,-!p2@FOXD1!0.75!8.04!FOXD1;;chr12:54378923..54378966,+!p1@HOXC10!0.75!4.61!HOXC10;;chr15:67418177..67418204,+!p9@SMAD3!0.74!4.49!SMAD3;;chr17:46703687..46703740,-!p1@HOXB9!0.74!4.49!HOXB9;;chr5:137804484..137804498,+!p2@EGR1!0.73!19.38!EGR1;;chr7:35293685..35293718,-!p1@TBX20!0.73!4.37!TBX20;;chr17:46687959..46688007,-!p2@HOXB7!0.72!6.15!HOXB7;;chr17:36105074..36105086,-!p2@HNF1B!0.72!4.25!HNF1B;;chr9:132427972..132428056,+!p1@PRRX2!0.71!5.56!PRRX2;;chr17:41277372..41277418,-!p1@BRCA1!0.70!16.07!BRCA1;;chr1:247171347..247171366,-!p2@ZNF695!0.70!7.92!ZNF695;;chr18:6414884..6414942,-!p1@L3MBTL4!0.70!5.20!L3MBTL4;;chr5:142780189..142780223,-!p6@NR3C1!0.70!4.02!NR3C1;;chr12:54393880..54393962,+!p1@HOXC9!0.70!4.02!HOXC9;;chr17:46620898..46620927,-!p9@HOXB2!0.69!4.73!HOXB2;;chr1:8935472..8935488,-!p20@ENO1!0.69!3.90!ENO1;;chr20:42295745..42295765,+!p1@MYBL2!0.68!71.15!MYBL2;;chr7:27190547..27190591,-!p1@HOXA6!0.68!3.78!HOXA6;;chr9:100615499..100615519,+!p1@FOXE1!0.68!3.78!FOXE1;;chr1:8938709..8938720,-!p3@ENO1!0.67!204.48!ENO1;;chr10:48355030..48355090,+!p1@ZNF488!0.67!4.96!ZNF488;;chr8:81397876..81397898,+!p5@ZBTB10!0.67!4.49!ZBTB10;;chr17:7197911..7197964,-!p1@YBX2!0.67!3.66!YBX2;;chr14:55493763..55493824,-!p1@WDHD1!0.66!31.44!WDHD1;;chr1:153939955..153940009,+!p2@CREB3L4!0.66!9.10!CREB3L4;;chr6:27356745..27356777,+!p1@ZNF391!0.66!6.26!ZNF391;;chr17:35294075..35294102,+!p1@ENST00000559335!0.66!3.55!LHX1;;chr1:151319710..151319774,-!p1@RFX5!0.65!39.95!RFX5;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.65!8.39!SOHLH2;;chr14:37051798..37051831,-!p1@NKX2-8!0.65!3.43!NKX2-8;;chr6:34524093..34524135,-!p1@SPDEF!0.65!3.43!SPDEF;;chr14:62162285..62162296,+!p3@HIF1A!0.64!20.45!HIF1A;;chr20:30193083..30193098,+!p1@ID1!0.63!314.63!ID1;;chr13:73633131..73633149,+!p1@KLF5!0.63!41.13!KLF5;;chr2:75937794..75937867,-!p2@GCFC2!0.63!8.04!GCFC2;;chr6:10415484..10415508,-!p3@TFAP2A!0.63!3.31!TFAP2A;;chr6:34524049..34524089,-!p2@SPDEF!0.63!3.31!SPDEF;;chr9:102584262..102584276,+!p1@NR4A3!0.62!8.04!NR4A3;;chr3:12330560..12330579,+!p1@PPARG!0.62!3.78!PPARG;;chr6:126221034..126221056,+!p13@NCOA7!0.62!3.19!NCOA7;;chr11:19262421..19262455,-!p3@E2F8!0.62!3.19!E2F8;;chr14:36989913..36989931,-!p6@NKX2-1!0.62!3.19!NKX2-1;;chr12:27485762..27485776,+!p3@ARNTL2!0.61!9.34!ARNTL2;;chr14:37051600..37051611,-!p2@NKX2-8!0.61!3.07!NKX2-8;;chr9:1158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+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0006603,UBERON:0009847,UBERON:0003353,UBERON:0010316
 |fonse_cell_line=FF:0101019,FF:0101120
 |fonse_cell_line_closure=FF:0101019,FF:0101120
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/prostate%2520cancer%2520cell%2520line%253aDU145.CNhs11260.10490-107B4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/prostate%2520cancer%2520cell%2520line%253aDU145.CNhs11260.10490-107B4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/prostate%2520cancer%2520cell%2520line%253aDU145.CNhs11260.10490-107B4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/prostate%2520cancer%2520cell%2520line%253aDU145.CNhs11260.10490-107B4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/prostate%2520cancer%2520cell%2520line%253aDU145.CNhs11260.10490-107B4.hg38.nobarcode.ctss.bed.gz
 |id=FF:10490-107B4
-|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0101332
+|is_a=EFO:0002091;;FF:0000210;;FF:0101332
+|is_obsolete=
+|library_id=CNhs11260
+|library_id_phase_based=2:CNhs11260
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10490
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10490
 |name=prostate cancer cell line:DU145
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11260,LSID758,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=107
 |rna_catalog_number=
@@ Line 57: / Line 78: @@
 |rna_weight_ug=58.42675
 |sample_age=69
+|sample_category=cell lines
 |sample_cell_catalog=RCB2143
 |sample_cell_line=DU145
@@ Line 77: / Line 99: @@
 |sample_tissue=prostate
 |top_motifs=NFY{A,B,C}:1.24313920614;PITX1..3:1.2244178812;NKX6-1,2:1.15012476915;ELK1,4_GABP{A,B1}:1.11863819333;E2F1..5:1.11404411183;NRF1:1.09024138291;NKX2-1,4:0.979551183366;LMO2:0.961543763012;MYB:0.917046792091;SNAI1..3:0.903841051238;FOX{I1,J2}:0.802827326259;ZNF143:0.773771010313;ZEB1:0.766543216871;POU1F1:0.761182365086;SP1:0.753172934619;FOXQ1:0.74751109289;bHLH_family:0.707143777683;HOX{A4,D4}:0.626519342621;YY1:0.587812031415;AIRE:0.582775743307;TFDP1:0.581561306467;NFE2L2:0.574123225123;CRX:0.554608347317;MYOD1:0.54787152917;HOX{A5,B5}:0.535895504767;LHX3,4:0.518471043272;NKX3-1:0.512135912796;ESRRA:0.500505713363;TEF:0.492242962348;VSX1,2:0.48934666544;PBX1:0.47970088629;NKX2-2,8:0.471763209586;XCPE1{core}:0.453480664582;TEAD1:0.450371987865;STAT1,3:0.422341356003;ZBTB16:0.394971400182;NFE2:0.337288376113;NR6A1:0.326577177719;PPARG:0.281230342894;NKX2-3_NKX2-5:0.268844093449;STAT5{A,B}:0.240740451633;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.237954896906;HNF1A:0.226947915467;FOXD3:0.22365819669;PDX1:0.199754605949;ZIC1..3:0.188468512295;ZFP161:0.173196014137;HOX{A6,A7,B6,B7}:0.159090789585;RBPJ:0.152057621891;STAT2,4,6:0.125430678823;TFAP2B:0.117244280007;BACH2:0.112533066093;IKZF2:0.111843647635;HSF1,2:0.105624054838;CDC5L:0.0721476272947;FOSL2:0.0598767114836;POU5F1:0.0549942102613;FOS_FOS{B,L1}_JUN{B,D}:0.0517098278296;PAX1,9:0.0398123290088;ZNF423:0.0350077231141;FOXM1:0.0334267723222;FOXP1:0.0324555329021;CEBPA,B_DDIT3:0.0192309733756;CDX1,2,4:0.0189677667308;NFE2L1:0.0149839694944;HES1:0.00405959123306;TP53:-0.00303370920877;HIF1A:-0.00588988248895;ONECUT1,2:-0.00862859025691;EVI1:-0.0286064676692;GFI1:-0.0312479010994;UFEwm:-0.0379536233992;CREB1:-0.0404842166249;RFX2..5_RFXANK_RFXAP:-0.0431272882619;NANOG:-0.0464245328931;MTF1:-0.0581534638715;AHR_ARNT_ARNT2:-0.0598514905364;PRRX1,2:-0.0632255185996;POU2F1..3:-0.0843785293818;ARID5B:-0.0891722590717;ATF5_CREB3:-0.0891870663536;RXR{A,B,G}:-0.0920900009165;NKX3-2:-0.0948930194757;PAX5:-0.0988609287632;EN1,2:-0.110999819106;BREu{core}:-0.126203979483;ALX4:-0.12910119868;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.129401221344;OCT4_SOX2{dimer}:-0.14934038231;ZBTB6:-0.168958214482;TLX2:-0.171982462743;PAX8:-0.180869696102;FOXL1:-0.181514616052;ADNP_IRX_SIX_ZHX:-0.182567290837;NR5A1,2:-0.187866790458;NFKB1_REL_RELA:-0.193231849797;ZNF384:-0.195075277107;SOX17:-0.207181141255;HNF4A_NR2F1,2:-0.208154735812;HBP1_HMGB_SSRP1_UBTF:-0.208326577219;FOXN1:-0.211065979626;HLF:-0.229067299057;RREB1:-0.229840340129;GATA6:-0.237467681096;RFX1:-0.243644676522;ATF4:-0.251150299617;RORA:-0.254092848075;TAL1_TCF{3,4,12}:-0.259494152699;FOX{F1,F2,J1}:-0.267599107798;TBX4,5:-0.283933505311;ESR1:-0.286272408046;CUX2:-0.293154369729;ZNF148:-0.293282799465;PAX2:-0.295927374886;ELF1,2,4:-0.302232683545;REST:-0.302505551896;EGR1..3:-0.304642073226;PAX6:-0.30638642352;GFI1B:-0.307378471989;MYBL2:-0.309119374585;HIC1:-0.334576656493;EBF1:-0.348541363283;DBP:-0.348888115121;TFAP2{A,C}:-0.364293769726;DMAP1_NCOR{1,2}_SMARC:-0.367269499327;MEF2{A,B,C,D}:-0.375342133661;IRF7:-0.384686604004;IKZF1:-0.388394388737;HOXA9_MEIS1:-0.407258900937;SOX{8,9,10}:-0.418415315046;RXRA_VDR{dimer}:-0.431179064426;TOPORS:-0.442083235954;FOXP3:-0.461609693643;PAX4:-0.468318757342;GCM1,2:-0.473416327048;LEF1_TCF7_TCF7L1,2:-0.483954608073;FOX{D1,D2}:-0.489846578036;PAX3,7:-0.496328349012;FOXO1,3,4:-0.506580348184;TBP:-0.508267605943;SPIB:-0.509647433196;GTF2A1,2:-0.522161465768;GZF1:-0.523785330088;RUNX1..3:-0.524697265994;HMGA1,2:-0.538698377874;NR3C1:-0.558212715763;JUN:-0.558246197568;TFCP2:-0.559701154968;PATZ1:-0.583512455175;IRF1,2:-0.600779133596;SREBF1,2:-0.601855902925;EP300:-0.608701889743;TLX1..3_NFIC{dimer}:-0.611295294694;SOX2:-0.616983021142;HAND1,2:-0.620103418399;ETS1,2:-0.630677723512;POU6F1:-0.634674501764;KLF4:-0.641410205299;GTF2I:-0.645872908904;POU3F1..4:-0.650291210277;ALX1:-0.656426516253;SOX5:-0.657382816546;MED-1{core}:-0.66973573583;NR1H4:-0.672286826102;FOXA2:-0.675363743652;SPI1:-0.681339839354;SRF:-0.699307133061;GLI1..3:-0.711627720267;MTE{core}:-0.734848913338;MAZ:-0.761599352676;NFIL3:-0.764265668479;ATF2:-0.792390664542;SPZ1:-0.844792854197;PRDM1:-0.853439889675;MYFfamily:-0.869970003328;AR:-0.898341614575;GATA4:-0.939443973701;NFIX:-0.94859307924;T:-0.98829855416;MAFB:-0.993218300344;XBP1:-1.0910329479;NANOG{mouse}:-1.1092110162;BPTF:-1.10925666914;ATF6:-1.16176368588;MZF1:-1.18514120762;NHLH1,2:-1.19709838935;TGIF1:-1.25627854433;NFATC1..3:-1.37012709718;TFAP4:-1.37926634017;ZNF238:-1.54008459195;HMX1:-2.25497905463;SMAD1..7,9:-2.61273413308
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10490-107B4;search_select_hide=table117:FF:10490-107B4
 }}

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FF:10490-107B4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:27, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0