FF:10508-107D4: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00004974 | ||
|accession_numbers=CAGE;DRX007960;DRR008832;DRZ000257;DRZ001642 | |DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00004974 | ||
|HumanCAGEScanFiles=NCig10062;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/neuroblastoma%2520cell%2520line%253aCHP-134%252c%2520tech_rep1.NCig10062.10508-107D4.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/neuroblastoma%2520cell%2520line%253aCHP-134%252c%2520tech_rep1.NCig10062.10508-107D4.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/neuroblastoma%2520cell%2520line%253aCHP-134%252c%2520tech_rep1.NCig10062.10508-107D4.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/neuroblastoma%2520cell%2520line%253aCHP-134%252c%2520tech_rep1.NCig10062.10508-107D4.hg19.GCTATA.pairs.bed.gz!NCig10126;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/neuroblastoma%2520cell%2520line%253aCHP-134%252c%2520tech_rep2.NCig10126.10508-107D4.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/neuroblastoma%2520cell%2520line%253aCHP-134%252c%2520tech_rep2.NCig10126.10508-107D4.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/neuroblastoma%2520cell%2520line%253aCHP-134%252c%2520tech_rep2.NCig10126.10508-107D4.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/neuroblastoma%2520cell%2520line%253aCHP-134%252c%2520tech_rep2.NCig10126.10508-107D4.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX007960;DRR008832;DRZ000257;DRZ001642;DRZ011607;DRZ012992 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057128;DRR062887;DRZ007963 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000013,UBERON:0004121,UBERON:0011216,UBERON:0002410,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0000010,UBERON:0001016 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000013,UBERON:0004121,UBERON:0011216,UBERON:0002410,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0000010,UBERON:0001016 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000333,CL:0000003,CL:0000548,CL:0002321,CL:0000219,CL:0000255 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000333,CL:0000003,CL:0000548,CL:0002321,CL:0000219,CL:0000255 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:16080659..16080685,+!p1@MYCN!2.88!761.99!MYCN;;chr2:182545234..182545252,-!p1@NEUROD1!2.83!670.04!NEUROD1;;chr4:174451370..174451387,-!p1@HAND2!2.41!256.56!HAND2;;chr11:71955210..71955227,-!p1@PHOX2A!2.41!253.74!PHOX2A;;chr1:160336851..160336868,+!p1@NHLH1!2.38!238.78!NHLH1;;chr4:81118647..81118666,+!p1@PRDM8!2.34!285.33!PRDM8;;chr4:41750731..41750748,-!p1@PHOX2B!2.29!195.42!PHOX2B;;chr7:19157248..19157268,-!p1@TWIST1!2.16!377.03!TWIST1;;chr2:16081912..16081931,+!p2@MYCN!2.10!126.23!MYCN;;chr2:74741569..74741620,+!p1@TLX2!2.09!121.24!TLX2;;chr13:72441315..72441454,-!p1@DACH1!2.02!199.77!DACH1;;chr4:174450089..174450153,-!p2@HAND2!2.01!100.78!HAND2;;chr12:103351444..103351461,+!p1@ASCL1!1.97!93.23!ASCL1;;chrX:136648279..136648295,+!p1@ZIC3!1.92!82.49!ZIC3;;chr20:20348740..20348757,+!p1@INSM1!1.92!81.98!INSM1;;chr5:153857778..153857794,-!p1@HAND1!1.91!80.57!HAND1;;chr1:116383738..116383752,-!p1@NHLH2!1.91!79.55!NHLH2;;chr2:16080823..16080836,+!p5@MYCN!1.89!75.84!MYCN;;chr10:8096631..8096660,+!p1@GATA3!1.87!87.10!GATA3;;chr2:16082155..16082169,+!p3@MYCN!1.85!70.09!MYCN;;chr4:174451350..174451363,-!p3@HAND2!1.83!66.38!HAND2;;chr5:50679228..50679288,+!p1@ISL1!1.82!64.84!ISL1;;chr2:16082395..16082415,+!p6@MYCN!1.79!60.88!MYCN;;chr4:41750057..41750078,-!p3@PHOX2B!1.78!59.47!PHOX2B;;chr15:57511609..57511651,+!p2@TCF12!1.76!92.60!TCF12;;chr17:48072574..48072597,-!p1@DLX3!1.76!56.79!DLX3;;chr17:37764128..37764258,-!p1@NEUROD2!1.76!56.66!NEUROD2;;chr13:37494365..37494381,-!p1@SMAD9!1.71!86.20!SMAD9;;chr10:8096772..8096787,+!p2@GATA3!1.69!56.53!GATA3;;chr2:5832508..5832524,+!p1@SOX11!1.67!46.17!SOX11;;chr7:63505799..63505904,+!p1@ZNF727!1.67!45.53!ZNF727;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.67!45.53!PEG3;;chr13:72441074..72441172,-!p2@DACH1!1.67!45.40!DACH1;;chr2:16080635..16080650,+!p4@MYCN!1.63!41.31!MYCN;;chr16:67197654..67197716,+!p3@HSF4!1.61!39.65!HSF4;;chr1:151032922..151032951,+!p2@MLLT11!1.60!62.54!MLLT11;;chr6:15401104..15401166,+!p5@JARID2!1.59!37.73!JARID2;;chr10:8095593..8095625,+!p3@GATA3!1.58!42.97!GATA3;;chr1:216896752..216896778,-!p1@ESRRG!1.56!34.92!ESRRG;;chr2:74741642..74741658,+!p2@TLX2!1.55!34.53!TLX2;;chr11:63684602..63684664,-!p1@RCOR2!1.52!62.41!RCOR2;;chr2:16082094..16082106,+!p7@MYCN!1.47!28.39!MYCN;;chr4:41750839..41750850,-!p2@PHOX2B!1.46!28.14!PHOX2B;;chr2:16082418..16082429,+!p8@MYCN!1.46!27.75!MYCN;;chr6:10412600..10412637,-!p1@TFAP2A!1.42!41.57!TFAP2A;;chr19:9609272..9609297,-!p1@ZNF560!1.42!25.58!ZNF560;;chrX:136648643..136648711,+!p2@ZIC3!1.42!25.20!ZIC3;;chr1:244214577..244214593,+!p1@ZNF238!1.41!24.56!ZNF238;;chr18:55102598..55102623,+!p1@ONECUT2!1.39!23.28!ONECUT2;;chr5:158526917..158526932,-!p1@EBF1!1.37!54.74!EBF1;;chrX:136648297..136648319,+!p3@ZIC3!1.35!21.61!ZIC3;;chr4:41750922..41750939,-!p4@PHOX2B!1.35!21.36!PHOX2B;;chr3:18486354..18486377,-!p2@SATB1!1.34!25.71!SATB1;;chr20:62795799..62795819,+!p1@MYT1!1.34!20.97!MYT1;;chr4:299227..299272,-!p1@ZNF732!1.33!20.46!ZNF732;;chr4:113437332..113437337,-!p1@NEUROG2!1.32!19.95!NEUROG2;;chr2:2334997..2335053,-!p1@MYT1L!1.32!19.82!MYT1L;;chr18:52989031..52989079,-!p2@TCF4!1.31!44.76!TCF4;;chr20:45142154..45142227,-!p1@ZNF334!1.31!38.37!ZNF334;;chr19:50432453..50432468,+!p1@ATF5!1.30!1031.34!ATF5;;chr2:239148671..239148686,-!p1@HES6!1.30!68.30!HES6;;chr2:166326200..166326216,+!p1@CSRNP3!1.28!26.60!CSRNP3;;chr12:55413751..55413765,+!p1@NEUROD4!1.28!18.03!NEUROD4;;chr19:38042240..38042309,+!p2@ZNF540!1.27!26.86!ZNF540;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!1.26!159.23!ZNF595;;chr4:81105027..81105039,+!p3@PRDM8!1.26!19.70!PRDM8;;chr6:10412392..10412409,-!p4@TFAP2A!1.26!19.44!TFAP2A;;chr8:40755333..40755352,-!p1@ZMAT4!1.25!16.75!ZMAT4;;chr1:116383716..116383723,-!p5@NHLH2!1.25!16.63!NHLH2;;chr5:150284532..150284549,-!p1@ZNF300!1.24!33.51!ZNF300;;chr2:5832493..5832507,+!p2@SOX11!1.23!16.11!SOX11;;chr1:151032860..151032918,+!p1@MLLT11!1.22!183.40!MLLT11;;chr2:60780607..60780624,-!p2@BCL11A!1.22!47.58!BCL11A;;chr2:25475120..25475176,-!p2@DNMT3A!1.22!20.85!DNMT3A;;chr19:58545454..58545498,+!p1@ZSCAN1!1.21!15.22!ZSCAN1;;chr4:206390..206444,+!p1@ZNF876P!1.20!26.09!ZNF876P;;chr19:19976683..19976709,+!p1@ZNF253!1.18!62.28!ZNF253;;chr3:44626446..44626477,+!p1@ZNF660!1.18!25.32!ZNF660;;chr13:37494391..37494406,-!p5@SMAD9!1.18!14.20!SMAD9;;chr1:151032957..151032968,+!p7@MLLT11!1.18!14.07!MLLT11;;chr9:77112244..77112262,+!p1@RORB!1.17!15.48!RORB;;chr2:176994408..176994492,+!p1@HOXD8!1.17!13.81!HOXD8;;chr8:93107451..93107468,-!p2@RUNX1T1!1.17!13.68!RUNX1T1;;chr7:19185475..19185487,-!p1@FERD3L!1.16!13.43!FERD3L;;chr4:41750047..41750056,-!p7@PHOX2B!1.16!13.43!PHOX2B;;chr3:52001448..52001478,-!p2@PCBP4!1.15!180.46!PCBP4;;chrX:84499081..84499115,+!p2@ZNF711!1.15!19.18!ZNF711;;chr22:19748231..19748317,+!p1@TBX1!1.15!13.17!TBX1;;chr7:31380292..31380351,-!p1@NEUROD6!1.14!12.92!NEUROD6;;chr18:55102628..55102646,+!p2@ONECUT2!1.14!12.66!ONECUT2;;chr17:41277372..41277418,-!p1@BRCA1!1.13!45.53!BRCA1;;chr6:15401075..15401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A3!0.36!1.28!GATA3;;chr11:125034605..125034636,+!p2@PKNOX2!0.36!1.28!PKNOX2;;chr11:125034640..125034655,+!p1@PKNOX2!0.36!1.28!PKNOX2;;chr15:80696606..80696633,+!p8@ARNT2!0.36!1.28!ARNT2;;chr17:48046642..48046667,+!p3@DLX4!0.36!1.28!DLX4;;chr19:22966893..22966924,-!p2@ZNF99!0.36!1.28!ZNF99;;chr8:41909496..41909512,-!p1@KAT6A!0.35!60.75!KAT6A;;chr5:138629628..138629688,+!p2@MATR3!0.35!48.09!MATR3;;chr19:36706024..36706049,+!p1@ZNF146!0.35!35.68!ZNF146;;chr19:9785743..9785784,-!p1@ZNF562!0.35!29.67!ZNF562;;chr12:53574464..53574539,+!p1@ZNF740!0.35!19.57!ZNF740;;chr7:28220198..28220269,-!p2@JAZF1!0.35!17.78!JAZF1;;chr18:53255415..53255491,-!p1@TCF4!0.35!16.50!TCF4;;chr7:148959269..148959326,+!p1@ZNF783!0.35!16.11!ZNF783;;chr14:74226961..74227020,-!p1@C14orf43!0.35!12.92!C14orf43;;chr19:14800849..14800917,+!p1@ZNF333!0.35!12.53!ZNF333;;chr19:58459047..58459083,-!p1@ZNF256!0.35!9.21!ZNF256;;chr5:133450365..133450444,+!p1@TCF7!0.35!8.57!TCF7;;chr21:47063625..47063658,+!p1@PCBP3!0.35!8.31!PCBP3;;chr3:48282587..48282603,+!p1@ZNF589!0.35!8.31!ZNF589;;chr5:178157651..178157689,-!p1@ZNF354A!0.35!7.67!ZNF354A;;chr6:43337180..43337244,-!p1@ZNF318!0.35!7.16!ZNF318;;chr19:38210622..38210681,-!p1@ZNF607!0.35!7.03!ZNF607;;chr21:27107726..27107772,+!p4@GABPA!0.35!5.76!GABPA;;chr22:20748434..20748455,+!p1@ZNF74!0.35!5.63!ZNF74;;chr19:44809143..44809187,-!p1@ZNF235!0.35!5.37!ZNF235;;chr19:37958318..37958365,-!p2@ZNF569!0.35!4.73!ZNF569;;chr7:99102267..99102304,+!p2@ZKSCAN5!0.35!4.09!ZKSCAN5;;chr6:56954830..56954845,+!p3@ZNF451!0.35!3.71!ZNF451;;chr20:48807171..48807234,+!p4@CEBPB!0.35!3.71!CEBPB;;chr5:180288225..180288243,-!p3@ZFP62!0.35!3.45!ZFP62;;chr7:64254834..64254854,+!p2@ZNF138!0.35!2.94!ZNF138;;chr1:91487629..91487640,-!p7@ZNF644!0.35!2.69!ZNF644;;chr20:50808252..50808264,-!p4@ZFP64!0.35!2.69!ZFP64;;chr6:27356745..27356777,+!p1@ZNF391!0.35!2.56!ZNF391;;chr16:30582888..30582923,-!p3@ZNF688!0.35!2.43!ZNF688;;chr3:44754176..44754196,+!p2@ZNF502!0.35!2.05!ZNF502;;chr17:4890672..4890692,-!p3@CAMTA2!0.35!1.92!CAMTA2;;chr1:27023752..27023799,+!p4@ARID1A!0.35!1.92!ARID1A;;chr6:15245797..15245818,+!p8@JARID2!0.35!1.66!JARID2;;chr8:28748157..28748175,+!p3@HMBOX1!0.35!1.66!HMBOX1;;chr10:64134120..64134183,+!p1@ZNF365!0.35!1.66!ZNF365;;chr2:176032843..176032941,-!p1@ATF2!0.34!82.24!ATF2;;chr5:135468516..135468621,+!p1@SMAD5!0.34!75.33!SMAD5;;chr13:115079949..115080022,+!p1@CHAMP1!0.34!54.87!CHAMP1;;chr5:176449684..176449722,+!p1@ZNF346!0.34!36.96!ZNF346;;chr1:91487553..91487612,-!p1@ZNF644!0.34!33.38!ZNF644;;chr19:11708259..11708309,+!p1@ZNF627!0.34!19.44!ZNF627;;chr6:35227480..35227546,+!p1@ZNF76!0.34!12.53!ZNF76;;chr15:43663214..43663261,-!p@chr15:43663214..43663261,-!0.34!10.87!ZSCAN29;;chr16:29818160..29818188,+!p6@MAZ!0.34!8.70!MAZ;;chr16:2059797..2059837,-!p1@ZNF598!0.34!7.42!ZNF598;;chr8:81398444..81398472,+!p1@ZBTB10!0.34!7.42!ZBTB10;;chr2:242576641..242576731,-!p2@THAP4!0.34!7.03!THAP4;;chr19:12146483..12146546,-!p1@ZNF433!0.34!6.52!ZNF433;;chr19:11071652..11071682,+!p3@SMARCA4!0.34!6.27!SMARCA4;;chr12:6798056..6798102,-!p3@ZNF384!0.34!5.12!ZNF384;;chr12:133707172..133707202,+!p2@ZNF10!0.34!3.84!ZNF10;;chr10:76585205..76585251,+!p3@KAT6B!0.34!3.58!KAT6B;;chr8:116681123..116681143,-!p4@TRPS1!0.34!3.07!TRPS1;;chr10:97889464..97889494,+!p3@ZNF518A!0.34!2.94!ZNF518A;;chr18:47814010..47814021,-!p3@CXXC1!0.34!2.56!CXXC1;;chr12:56583371..56583394,-!p2@SMARCC2!0.34!2.30!SMARCC2;;chr2:148779187..148779222,+!p5@MBD5!0.34!1.79!MBD5;;chr12:51611694..51611719,-!p2@POU6F1!0.34!1.66!POU6F1;;chr1:35658736..35658754,-!p1@SFPQ!0.33!705.08!SFPQ;;chr10:60145155..60145206,+!p1@TFAM!0.33!84.67!TFAM;;chr15:35280439..35280503,-!p1@ZNF770!0.33!66.89!ZNF770;;chr11:118307179..118307223,+!p1@MLL!0.33!59.60!MLL;;chr18:32924372..32924430,-!p1@ZNF24!0.33!58.96!ZNF24;;chr1:53018743..53018777,-!p1@ZCCHC11!0.33!32.74!ZCCHC11;;chr7:77428149..77428220,+!p1@PHTF2!0.33!18.93!PHTF2;;chr7:64023441..64023462,-!p1@ZNF680!0.33!14.84!ZNF680;;chr3:40566428..40566480,+!p1@ZNF621!0.33!14.84!ZNF621;;chr16:69419794..69419830,-!p3@TERF2!0.33!8.70!TERF2;;chr18:5296001..5296045,-!p1@ZFP161!0.33!6.78!ZFP161;;chr19:56915668..56915732,+!p1@ZNF583!0.33!6.39!ZNF583;; | |expression_enrichment_score=chr2:16080659..16080685,+!p1@MYCN!2.88!761.99!MYCN;;chr2:182545234..182545252,-!p1@NEUROD1!2.83!670.04!NEUROD1;;chr4:174451370..174451387,-!p1@HAND2!2.41!256.56!HAND2;;chr11:71955210..71955227,-!p1@PHOX2A!2.41!253.74!PHOX2A;;chr1:160336851..160336868,+!p1@NHLH1!2.38!238.78!NHLH1;;chr4:81118647..81118666,+!p1@PRDM8!2.34!285.33!PRDM8;;chr4:41750731..41750748,-!p1@PHOX2B!2.29!195.42!PHOX2B;;chr7:19157248..19157268,-!p1@TWIST1!2.16!377.03!TWIST1;;chr2:16081912..16081931,+!p2@MYCN!2.10!126.23!MYCN;;chr2:74741569..74741620,+!p1@TLX2!2.09!121.24!TLX2;;chr13:72441315..72441454,-!p1@DACH1!2.02!199.77!DACH1;;chr4:174450089..174450153,-!p2@HAND2!2.01!100.78!HAND2;;chr12:103351444..103351461,+!p1@ASCL1!1.97!93.23!ASCL1;;chrX:136648279..136648295,+!p1@ZIC3!1.92!82.49!ZIC3;;chr20:20348740..20348757,+!p1@INSM1!1.92!81.98!INSM1;;chr5:153857778..153857794,-!p1@HAND1!1.91!80.57!HAND1;;chr1:116383738..116383752,-!p1@NHLH2!1.91!79.55!NHLH2;;chr2:16080823..16080836,+!p5@MYCN!1.89!75.84!MYCN;;chr10:8096631..8096660,+!p1@GATA3!1.87!87.10!GATA3;;chr2:16082155..16082169,+!p3@MYCN!1.85!70.09!MYCN;;chr4:174451350..174451363,-!p3@HAND2!1.83!66.38!HAND2;;chr5:50679228..50679288,+!p1@ISL1!1.82!64.84!ISL1;;chr2:16082395..16082415,+!p6@MYCN!1.79!60.88!MYCN;;chr4:41750057..41750078,-!p3@PHOX2B!1.78!59.47!PHOX2B;;chr15:57511609..57511651,+!p2@TCF12!1.76!92.60!TCF12;;chr17:48072574..48072597,-!p1@DLX3!1.76!56.79!DLX3;;chr17:37764128..37764258,-!p1@NEUROD2!1.76!56.66!NEUROD2;;chr13:37494365..37494381,-!p1@SMAD9!1.71!86.20!SMAD9;;chr10:8096772..8096787,+!p2@GATA3!1.69!56.53!GATA3;;chr2:5832508..5832524,+!p1@SOX11!1.67!46.17!SOX11;;chr7:63505799..63505904,+!p1@ZNF727!1.67!45.53!ZNF727;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.67!45.53!PEG3;;chr13:72441074..72441172,-!p2@DACH1!1.67!45.40!DACH1;;chr2:16080635..16080650,+!p4@MYCN!1.63!41.31!MYCN;;chr16:67197654..67197716,+!p3@HSF4!1.61!39.65!HSF4;;chr1:151032922..151032951,+!p2@MLLT11!1.60!62.54!MLLT11;;chr6:15401104..15401166,+!p5@JARID2!1.59!37.73!JARID2;;chr10:8095593..8095625,+!p3@GATA3!1.58!42.97!GATA3;;chr1:216896752..216896778,-!p1@ESRRG!1.56!34.92!ESRRG;;chr2:74741642..74741658,+!p2@TLX2!1.55!34.53!TLX2;;chr11:63684602..63684664,-!p1@RCOR2!1.52!62.41!RCOR2;;chr2:16082094..16082106,+!p7@MYCN!1.47!28.39!MYCN;;chr4:41750839..41750850,-!p2@PHOX2B!1.46!28.14!PHOX2B;;chr2:16082418..16082429,+!p8@MYCN!1.46!27.75!MYCN;;chr6:10412600..10412637,-!p1@TFAP2A!1.42!41.57!TFAP2A;;chr19:9609272..9609297,-!p1@ZNF560!1.42!25.58!ZNF560;;chrX:136648643..136648711,+!p2@ZIC3!1.42!25.20!ZIC3;;chr1:244214577..244214593,+!p1@ZNF238!1.41!24.56!ZNF238;;chr18:55102598..55102623,+!p1@ONECUT2!1.39!23.28!ONECUT2;;chr5:158526917..158526932,-!p1@EBF1!1.37!54.74!EBF1;;chrX:136648297..136648319,+!p3@ZIC3!1.35!21.61!ZIC3;;chr4:41750922..41750939,-!p4@PHOX2B!1.35!21.36!PHOX2B;;chr3:18486354..18486377,-!p2@SATB1!1.34!25.71!SATB1;;chr20:62795799..62795819,+!p1@MYT1!1.34!20.97!MYT1;;chr4:299227..299272,-!p1@ZNF732!1.33!20.46!ZNF732;;chr4:113437332..113437337,-!p1@NEUROG2!1.32!19.95!NEUROG2;;chr2:2334997..2335053,-!p1@MYT1L!1.32!19.82!MYT1L;;chr18:52989031..52989079,-!p2@TCF4!1.31!44.76!TCF4;;chr20:45142154..45142227,-!p1@ZNF334!1.31!38.37!ZNF334;;chr19:50432453..50432468,+!p1@ATF5!1.30!1031.34!ATF5;;chr2:239148671..239148686,-!p1@HES6!1.30!68.30!HES6;;chr2:166326200..166326216,+!p1@CSRNP3!1.28!26.60!CSRNP3;;chr12:55413751..55413765,+!p1@NEUROD4!1.28!18.03!NEUROD4;;chr19:38042240..38042309,+!p2@ZNF540!1.27!26.86!ZNF540;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!1.26!159.23!ZNF595;;chr4:81105027..81105039,+!p3@PRDM8!1.26!19.70!PRDM8;;chr6:10412392..10412409,-!p4@TFAP2A!1.26!19.44!TFAP2A;;chr8:40755333..40755352,-!p1@ZMAT4!1.25!16.75!ZMAT4;;chr1:116383716..116383723,-!p5@NHLH2!1.25!16.63!NHLH2;;chr5:150284532..150284549,-!p1@ZNF300!1.24!33.51!ZNF300;;chr2:5832493..5832507,+!p2@SOX11!1.23!16.11!SOX11;;chr1:151032860..151032918,+!p1@MLLT11!1.22!183.40!MLLT11;;chr2:60780607..60780624,-!p2@BCL11A!1.22!47.58!BCL11A;;chr2:25475120..25475176,-!p2@DNMT3A!1.22!20.85!DNMT3A;;chr19:58545454..58545498,+!p1@ZSCAN1!1.21!15.22!ZSCAN1;;chr4:206390..206444,+!p1@ZNF876P!1.20!26.09!ZNF876P;;chr19:19976683..19976709,+!p1@ZNF253!1.18!62.28!ZNF253;;chr3:44626446..44626477,+!p1@ZNF660!1.18!25.32!ZNF660;;chr13:37494391..37494406,-!p5@SMAD9!1.18!14.20!SMAD9;;chr1:151032957..151032968,+!p7@MLLT11!1.18!14.07!MLLT11;;chr9:77112244..77112262,+!p1@RORB!1.17!15.48!RORB;;chr2:176994408..176994492,+!p1@HOXD8!1.17!13.81!HOXD8;;chr8:93107451..93107468,-!p2@RUNX1T1!1.17!13.68!RUNX1T1;;chr7:19185475..19185487,-!p1@FERD3L!1.16!13.43!FERD3L;;chr4:41750047..41750056,-!p7@PHOX2B!1.16!13.43!PHOX2B;;chr3:52001448..52001478,-!p2@PCBP4!1.15!180.46!PCBP4;;chrX:84499081..84499115,+!p2@ZNF711!1.15!19.18!ZNF711;;chr22:19748231..19748317,+!p1@TBX1!1.15!13.17!TBX1;;chr7:31380292..31380351,-!p1@NEUROD6!1.14!12.92!NEUROD6;;chr18:55102628..55102646,+!p2@ONECUT2!1.14!12.66!ONECUT2;;chr17:41277372..41277418,-!p1@BRCA1!1.13!45.53!BRCA1;;chr6:15401075..15401095,+!p11@JARID2!1.13!12.41!JARID2;;chr8:93074848..93074871,-!p3@RUNX1T1!1.13!12.41!RUNX1T1;;chr4:81105065..81105089,+!p8@PRDM8!1.12!12.15!PRDM8;;chr1:216896780..216896800,-!p2@ESRRG!1.12!12.15!ESRRG;;chr10:50604121..50604142,-!p1@DRGX!1.12!12.15!DRGX;;chr12:54447599..54447630,+!p3@HOXC4!1.10!14.20!HOXC4;;chr2:219849805..219849819,-!p3@FEV!1.09!11.38!FEV;;chr19:31840130..31840160,-!p2@TSHZ3!1.08!17.14!TSHZ3;;chr3:40547564..40547616,+!p1@ZNF620!1.08!15.48!ZNF620;;chrY:21906594..21906622,-!p1@KDM5D!1.08!11.00!KDM5D;;chr2:66662281..66662308,+!p1@MEIS1!1.07!37.22!MEIS1;;chr19:22817119..22817145,+!p1@ZNF492!1.07!18.03!ZNF492;;chrX:84498989..84499003,+!p1@ZNF711!1.07!14.84!ZNF711;;chr2:16082384..16082391,+!p9@MYCN!1.07!10.87!MYCN;;chr10:131762504..131762555,-!p1@EBF3!1.07!10.62!EBF3;;chr2:66662510..66662521,+!p6@MEIS1!1.06!10.49!MEIS1;;chr5:158524625..158524669,-!p6@EBF1!1.06!10.49!EBF1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.06!10.36!RUNX1T1;;chr2:60780753..60780800,-!p1@BCL11A!1.05!50.39!BCL11A;;chr17:53342311..53342400,+!p1@HLF!1.05!11.64!HLF;;chr1:116383701..116383706,-!p9@NHLH2!1.05!10.23!NHLH2;;chr3:44596679..44596726,+!p1@ZNF167!1.03!43.48!ZNF167;;chr2:71127699..71127744,+!p1@VAX2!1.03!20.21!VAX2;;chr11:8102749..8102769,+!p2@TUB!1.03!18.93!TUB;;chr2:182545282..182545294,-!p2@NEUROD1!1.03!9.72!NEUROD1;;chr1:247171347..247171366,-!p2@ZNF695!1.02!17.52!ZNF695;;chr19:33865009..33865090,+!p3@CEBPG!1.02!12.79!CEBPG;;chr2:182545296..182545307,-!p3@NEUROD1!1.02!9.59!NEUROD1;;chr2:2335109..2335134,-!p2@MYT1L!1.02!9.59!MYT1L;;chr20:42295713..42295738,+!p2@MYBL2!1.01!55.25!MYBL2;;chr3:18466787..18466839,-!p1@SATB1!1.01!42.08!SATB1;;chr7:6655225..6655279,+!p1@ENST00000457543!1.01!14.07!ZNF853;;chr11:8102846..8102892,+!p1@TUB!1.01!13.05!TUB;;chr12:24102576..24102623,-!p2@SOX5!1.01!9.34!SOX5;;chr18:56532100..56532130,+!p1@ZNF532!1.00!17.01!ZNF532;;chr2:182543783..182543813,-!p6@NEUROD1!1.00!8.95!NEUROD1;;chr2:60778035..60778060,-!p4@BCL11A!0.99!10.49!BCL11A;;chr8:30890810..30890880,-!p1@PURG!0.99!8.82!PURG;;chr1:216896801..216896812,-!p5@ESRRG!0.99!8.82!ESRRG;;chr17:59477233..59477263,+!p1@TBX2!0.98!27.11!TBX2;;chr18:42260920..42260951,+!p4@SETBP1!0.98!8.44!SETBP1;;chr20:45087928..45087965,-!p1@ENST00000400371,p1@uc002xry.2!0.97!8.31!ZNF663;;chr2:74740569..74740580,+!p4@TLX2!0.97!8.31!TLX2;;chr6:21597765..21597779,+!p2@SOX4!0.96!67.53!SOX4;;chr18:42260840..42260860,+!p2@SETBP1!0.96!8.19!SETBP1;;chrX:106959661..106959763,-!p4@TSC22D3!0.95!23.92!TSC22D3;;chr20:32274179..32274213,-!p1@E2F1!0.94!52.56!E2F1;;chr12:54447637..54447659,+!p4@HOXC4!0.94!7.67!HOXC4;;chr14:58797974..58798011,+!p3@ARID4A!0.94!7.67!ARID4A;;chr15:57511589..57511608,+!p4@TCF12!0.94!7.67!TCF12;;chr4:81105091..81105107,+!p9@PRDM8!0.94!7.67!PRDM8;;chr12:50479109..50479146,+!p2@SMARCD1!0.93!132.50!SMARCD1;;chr19:23941680..23941704,-!p1@ZNF681!0.93!22.64!ZNF681;;chr20:50721803..50721857,-!p2@ZFP64!0.93!12.02!ZFP64;;chr3:141105705..141105770,+!p4@ZBTB38!0.93!9.21!ZBTB38;;chr2:95963052..95963106,+!p1@KCNIP3!0.93!7.55!KCNIP3;;chr12:103352277..103352324,+!p2@ASCL1!0.93!7.55!ASCL1;;chr19:22966925..22966958,-!p1@ZNF99!0.93!7.42!ZNF99;;chr2:45168997..45169020,+!p4@SIX3!0.93!7.42!SIX3;;chr3:52001426..52001447,-!p3@PCBP4!0.92!21.36!PCBP4;;chr7:19157043..19157088,-!p2@TWIST1!0.92!18.80!TWIST1;;chr6:21597600..21597664,+!p3@SOX4!0.92!12.41!SOX4;;chr12:55413694..55413703,+!p2@NEUROD4!0.92!7.29!NEUROD4;;chr18:56531584..56531646,+!p4@ZNF532!0.91!9.46!ZNF532;;chr17:48046543..48046575,+!p2@DLX4!0.91!7.16!DLX4;;chr2:66662249..66662267,+!p2@MEIS1!0.90!28.01!MEIS1;;chr14:73360799..73360817,-!p1@DPF3!0.90!25.32!DPF3;;chr19:23941647..23941672,-!p2@ZNF681!0.90!11.77!ZNF681;;chr2:45236540..45236577,-!p1@SIX2!0.90!6.91!SIX2;;chr2:185463247..185463263,+!p1@ZNF804A!0.89!12.41!ZNF804A;;chr15:80696703..80696754,+!p1@ARNT2!0.89!9.08!ARNT2;;chr19:37407411..37407451,+!p3@ZNF568!0.89!8.95!ZNF568;;chr17:38465441..38465481,+!p6@RARA!0.89!8.44!RARA;;chr11:8102819..8102845,+!p3@TUB!0.89!8.44!TUB;;chr4:8873545..8873583,-!p1@HMX1!0.89!6.78!HMX1;;chr5:153857800..153857812,-!p2@HAND1!0.89!6.78!HAND1;;chr7:19185493..19185503,-!p2@FERD3L!0.89!6.78!FERD3L;;chr2:66662396..66662407,+!p4@MEIS1!0.89!6.78!MEIS1;;chr4:41750793..41750804,-!p5@PHOX2B!0.89!6.78!PHOX2B;;chr1:43148625..43148710,+!p3@YBX1!0.88!12.28!YBX1;;chr19:9473676..9473712,+!p2@ZNF177,p2@ZNF559-ZNF177!0.88!6.52!ZNF177;;chr2:2335070..2335098,-!p4@MYT1L!0.88!6.52!MYT1L;;chr9:109625401..109625458,+!p1@ZNF462!0.87!17.65!ZNF462;;chr1:247171316..247171336,-!p3@ZNF695!0.87!9.72!ZNF695;;chr1:214161272..214161322,+!p1@PROX1!0.87!9.21!PROX1;;chr19:37998036..37998098,+!p2@ZNF793!0.87!8.06!ZNF793;;chrX:129402768..129402796,-!p2@ZNF280C!0.86!20.08!ZNF280C;;chr1:227751231..227751273,+!p1@ZNF678!0.85!40.80!ZNF678;;chr9:114287433..114287513,+!p1@ZNF483!0.85!16.63!ZNF483;;chr19:11750566..11750627,+!p1@ZNF833P!0.85!8.44!ZNF833P;;chr17:48045917..48045977,+!p1@DLX4!0.85!6.14!DLX4;;chr8:93115362..93115391,-!p9@RUNX1T1!0.85!6.01!RUNX1T1;;chr1:153940354..15394039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A3!0.36!1.28!GATA3;;chr11:125034605..125034636,+!p2@PKNOX2!0.36!1.28!PKNOX2;;chr11:125034640..125034655,+!p1@PKNOX2!0.36!1.28!PKNOX2;;chr15:80696606..80696633,+!p8@ARNT2!0.36!1.28!ARNT2;;chr17:48046642..48046667,+!p3@DLX4!0.36!1.28!DLX4;;chr19:22966893..22966924,-!p2@ZNF99!0.36!1.28!ZNF99;;chr8:41909496..41909512,-!p1@KAT6A!0.35!60.75!KAT6A;;chr5:138629628..138629688,+!p2@MATR3!0.35!48.09!MATR3;;chr19:36706024..36706049,+!p1@ZNF146!0.35!35.68!ZNF146;;chr19:9785743..9785784,-!p1@ZNF562!0.35!29.67!ZNF562;;chr12:53574464..53574539,+!p1@ZNF740!0.35!19.57!ZNF740;;chr7:28220198..28220269,-!p2@JAZF1!0.35!17.78!JAZF1;;chr18:53255415..53255491,-!p1@TCF4!0.35!16.50!TCF4;;chr7:148959269..148959326,+!p1@ZNF783!0.35!16.11!ZNF783;;chr14:74226961..74227020,-!p1@C14orf43!0.35!12.92!C14orf43;;chr19:14800849..14800917,+!p1@ZNF333!0.35!12.53!ZNF333;;chr19:58459047..58459083,-!p1@ZNF256!0.35!9.21!ZNF256;;chr5:133450365..133450444,+!p1@TCF7!0.35!8.57!TCF7;;chr21:47063625..47063658,+!p1@PCBP3!0.35!8.31!PCBP3;;chr3:48282587..48282603,+!p1@ZNF589!0.35!8.31!ZNF589;;chr5:178157651..178157689,-!p1@ZNF354A!0.35!7.67!ZNF354A;;chr6:43337180..43337244,-!p1@ZNF318!0.35!7.16!ZNF318;;chr19:38210622..38210681,-!p1@ZNF607!0.35!7.03!ZNF607;;chr21:27107726..27107772,+!p4@GABPA!0.35!5.76!GABPA;;chr22:20748434..20748455,+!p1@ZNF74!0.35!5.63!ZNF74;;chr19:44809143..44809187,-!p1@ZNF235!0.35!5.37!ZNF235;;chr19:37958318..37958365,-!p2@ZNF569!0.35!4.73!ZNF569;;chr7:99102267..99102304,+!p2@ZKSCAN5!0.35!4.09!ZKSCAN5;;chr6:56954830..56954845,+!p3@ZNF451!0.35!3.71!ZNF451;;chr20:48807171..48807234,+!p4@CEBPB!0.35!3.71!CEBPB;;chr5:180288225..180288243,-!p3@ZFP62!0.35!3.45!ZFP62;;chr7:64254834..64254854,+!p2@ZNF138!0.35!2.94!ZNF138;;chr1:91487629..91487640,-!p7@ZNF644!0.35!2.69!ZNF644;;chr20:50808252..50808264,-!p4@ZFP64!0.35!2.69!ZFP64;;chr6:27356745..27356777,+!p1@ZNF391!0.35!2.56!ZNF391;;chr16:30582888..30582923,-!p3@ZNF688!0.35!2.43!ZNF688;;chr3:44754176..44754196,+!p2@ZNF502!0.35!2.05!ZNF502;;chr17:4890672..4890692,-!p3@CAMTA2!0.35!1.92!CAMTA2;;chr1:27023752..27023799,+!p4@ARID1A!0.35!1.92!ARID1A;;chr6:15245797..15245818,+!p8@JARID2!0.35!1.66!JARID2;;chr8:28748157..28748175,+!p3@HMBOX1!0.35!1.66!HMBOX1;;chr10:64134120..64134183,+!p1@ZNF365!0.35!1.66!ZNF365;;chr2:176032843..176032941,-!p1@ATF2!0.34!82.24!ATF2;;chr5:135468516..135468621,+!p1@SMAD5!0.34!75.33!SMAD5;;chr13:115079949..115080022,+!p1@CHAMP1!0.34!54.87!CHAMP1;;chr5:176449684..176449722,+!p1@ZNF346!0.34!36.96!ZNF346;;chr1:91487553..91487612,-!p1@ZNF644!0.34!33.38!ZNF644;;chr19:11708259..11708309,+!p1@ZNF627!0.34!19.44!ZNF627;;chr6:35227480..35227546,+!p1@ZNF76!0.34!12.53!ZNF76;;chr15:43663214..43663261,-!p@chr15:43663214..43663261,-!0.34!10.87!ZSCAN29;;chr16:29818160..29818188,+!p6@MAZ!0.34!8.70!MAZ;;chr16:2059797..2059837,-!p1@ZNF598!0.34!7.42!ZNF598;;chr8:81398444..81398472,+!p1@ZBTB10!0.34!7.42!ZBTB10;;chr2:242576641..242576731,-!p2@THAP4!0.34!7.03!THAP4;;chr19:12146483..12146546,-!p1@ZNF433!0.34!6.52!ZNF433;;chr19:11071652..11071682,+!p3@SMARCA4!0.34!6.27!SMARCA4;;chr12:6798056..6798102,-!p3@ZNF384!0.34!5.12!ZNF384;;chr12:133707172..133707202,+!p2@ZNF10!0.34!3.84!ZNF10;;chr10:76585205..76585251,+!p3@KAT6B!0.34!3.58!KAT6B;;chr8:116681123..116681143,-!p4@TRPS1!0.34!3.07!TRPS1;;chr10:97889464..97889494,+!p3@ZNF518A!0.34!2.94!ZNF518A;;chr18:47814010..47814021,-!p3@CXXC1!0.34!2.56!CXXC1;;chr12:56583371..56583394,-!p2@SMARCC2!0.34!2.30!SMARCC2;;chr2:148779187..148779222,+!p5@MBD5!0.34!1.79!MBD5;;chr12:51611694..51611719,-!p2@POU6F1!0.34!1.66!POU6F1;;chr1:35658736..35658754,-!p1@SFPQ!0.33!705.08!SFPQ;;chr10:60145155..60145206,+!p1@TFAM!0.33!84.67!TFAM;;chr15:35280439..35280503,-!p1@ZNF770!0.33!66.89!ZNF770;;chr11:118307179..118307223,+!p1@MLL!0.33!59.60!MLL;;chr18:32924372..32924430,-!p1@ZNF24!0.33!58.96!ZNF24;;chr1:53018743..53018777,-!p1@ZCCHC11!0.33!32.74!ZCCHC11;;chr7:77428149..77428220,+!p1@PHTF2!0.33!18.93!PHTF2;;chr7:64023441..64023462,-!p1@ZNF680!0.33!14.84!ZNF680;;chr3:40566428..40566480,+!p1@ZNF621!0.33!14.84!ZNF621;;chr16:69419794..69419830,-!p3@TERF2!0.33!8.70!TERF2;;chr18:5296001..5296045,-!p1@ZFP161!0.33!6.78!ZFP161;;chr19:56915668..56915732,+!p1@ZNF583!0.33!6.39!ZNF583;; | ||
Line 40: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/neuroblastoma%2520cell%2520line%253aCHP-134.CNhs11276.10508-107D4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/neuroblastoma%2520cell%2520line%253aCHP-134.CNhs11276.10508-107D4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/neuroblastoma%2520cell%2520line%253aCHP-134.CNhs11276.10508-107D4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/neuroblastoma%2520cell%2520line%253aCHP-134.CNhs11276.10508-107D4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/neuroblastoma%2520cell%2520line%253aCHP-134.CNhs11276.10508-107D4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10508-107D4 | |id=FF:10508-107D4 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0102989 | |is_a=EFO:0002091;;FF:0000210;;FF:0102989 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11276 | |library_id=CNhs11276 | ||
|library_id_phase_based=2:CNhs11276 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10508 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10508 | |||
|name=neuroblastoma cell line:CHP-134 | |name=neuroblastoma cell line:CHP-134 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 49: | Line 63: | ||
|profile_cagescan=NCig10062,,, | |profile_cagescan=NCig10062,,, | ||
|profile_hcage=CNhs11276,LSID759,release008,COMPLETED | |profile_hcage=CNhs11276,LSID759,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 65: | Line 80: | ||
|rna_tube_id=107D4 | |rna_tube_id=107D4 | ||
|rna_weight_ug=59.164 | |rna_weight_ug=59.164 | ||
|rnaseq_library_id=RDhi10071 | |||
|sample_age= | |sample_age= | ||
|sample_category=cell lines | |sample_category=cell lines | ||
Line 88: | Line 104: | ||
|top_motifs=NANOG:3.28189506867;AHR_ARNT_ARNT2:2.84583300352;YY1:2.53935277457;BREu{core}:2.22815425639;POU6F1:2.21516437614;POU1F1:2.13093653615;FOXM1:2.05223480301;ZNF143:1.99906029401;STAT1,3:1.92970435234;PITX1..3:1.92274490106;LHX3,4:1.89962262085;PRRX1,2:1.89924766956;FOXP1:1.89632669697;ADNP_IRX_SIX_ZHX:1.8913665302;NRF1:1.88237086039;ELK1,4_GABP{A,B1}:1.85184774936;LEF1_TCF7_TCF7L1,2:1.84076983831;NKX6-1,2:1.72792726903;CDC5L:1.63178778191;NFY{A,B,C}:1.62016651912;PATZ1:1.61486912814;CRX:1.53077110486;CUX2:1.52524585891;GFI1:1.51075615073;SOX17:1.49881433202;FOX{I1,J2}:1.41947663102;NHLH1,2:1.40730533163;ZFP161:1.38770109017;SOX2:1.37150247076;OCT4_SOX2{dimer}:1.34763953815;TFDP1:1.34008303657;TOPORS:1.28719110893;E2F1..5:1.2823161337;MED-1{core}:1.25575921686;SOX{8,9,10}:1.24132448529;ARID5B:1.22029243298;MZF1:1.20622764795;AIRE:1.19227185332;NKX2-3_NKX2-5:1.12395560669;bHLH_family:1.11513470701;FOXA2:1.10838714905;RREB1:1.10773215398;ZIC1..3:1.07609318691;PAX3,7:1.04605801596;PAX4:1.0303212575;PAX5:1.00676536343;JUN:0.981632043962;RFX1:0.950924146551;RFX2..5_RFXANK_RFXAP:0.950862476668;REST:0.94005597358;VSX1,2:0.938144143518;TAL1_TCF{3,4,12}:0.921958616244;POU3F1..4:0.919319937258;HOXA9_MEIS1:0.897194622995;NKX2-1,4:0.879177496499;MTE{core}:0.878213013424;CREB1:0.850034018604;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.798643835174;TFAP2B:0.788109385586;GTF2I:0.763290374898;EVI1:0.723213958275;EGR1..3:0.713190023045;RBPJ:0.687386567627;ATF2:0.679090191485;RORA:0.672293181307;NR1H4:0.654174617559;ONECUT1,2:0.580041210481;MYB:0.545427600848;ATF4:0.540835904489;HIC1:0.511828955013;CDX1,2,4:0.49183434999;ATF5_CREB3:0.490408857936;GFI1B:0.479498071779;PAX6:0.477421847163;EN1,2:0.470225533491;TGIF1:0.462590820245;ZBTB16:0.46225970839;PAX1,9:0.460766263921;SOX5:0.451048312304;MYFfamily:0.434900579795;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.383614059801;BPTF:0.344995724887;PRDM1:0.34449098719;CEBPA,B_DDIT3:0.282978942265;MAZ:0.253488877032;PDX1:0.243431326717;GATA6:0.227906575016;ZNF384:0.182384633734;PBX1:0.174178591751;DBP:0.173110022533;ESRRA:0.159145808025;RXR{A,B,G}:0.142775856914;FOXD3:0.102409711878;POU2F1..3:0.0641839032569;TEF:0.0565475472658;HAND1,2:0.0531189383593;GATA4:0.0399218813271;MYOD1:0.0363091503404;HOX{A5,B5}:0.0343899054768;NR6A1:0.0255729976406;ZBTB6:0.0209554227928;HNF1A:-0.0132496604133;ZNF423:-0.0220952114417;PPARG:-0.0965398342734;MEF2{A,B,C,D}:-0.12227302406;HOX{A6,A7,B6,B7}:-0.122495677343;MYBL2:-0.12481474422;FOXL1:-0.133650601053;GTF2A1,2:-0.165890640926;FOXN1:-0.178033181417;HOX{A4,D4}:-0.182365186094;HIF1A:-0.190508216998;PAX8:-0.193958813961;KLF4:-0.200987915332;HBP1_HMGB_SSRP1_UBTF:-0.214890588217;SREBF1,2:-0.225693666435;FOXP3:-0.24388928509;POU5F1:-0.245745013214;HLF:-0.256730649443;TP53:-0.27498321889;ZEB1:-0.315417381523;STAT5{A,B}:-0.316713136703;NKX3-1:-0.341682778814;XCPE1{core}:-0.360970498519;LMO2:-0.379158268343;FOX{F1,F2,J1}:-0.380182329394;SMAD1..7,9:-0.381730709945;ALX1:-0.398284334101;AR:-0.406175622946;NR3C1:-0.420118544873;FOSL2:-0.421931047157;ELF1,2,4:-0.438076042644;NFIX:-0.447338779862;MTF1:-0.465902488245;NANOG{mouse}:-0.49316927708;NKX2-2,8:-0.504809722961;TBX4,5:-0.505520553121;PAX2:-0.508492982973;HMGA1,2:-0.533183431963;FOXQ1:-0.575923400416;SNAI1..3:-0.602200219119;NFIL3:-0.634302545173;IKZF2:-0.672207468766;NR5A1,2:-0.675150841274;NFKB1_REL_RELA:-0.683759788753;EP300:-0.687681572652;FOS_FOS{B,L1}_JUN{B,D}:-0.708165457188;UFEwm:-0.714068295594;HES1:-0.717080776056;NFE2:-0.720843639285;TLX1..3_NFIC{dimer}:-0.727533766935;DMAP1_NCOR{1,2}_SMARC:-0.729535812462;SPIB:-0.750416319112;BACH2:-0.767288535197;GZF1:-0.769869173983;HNF4A_NR2F1,2:-0.782638624189;ZNF148:-0.784954946448;T:-0.785559546372;NFE2L2:-0.795830062798;XBP1:-0.800066468367;RUNX1..3:-0.80202523952;SPI1:-0.853975335608;ATF6:-0.856371854416;FOX{D1,D2}:-0.901822345069;TFAP2{A,C}:-0.919938049036;NFE2L1:-0.951863556822;ETS1,2:-1.01834555481;NKX3-2:-1.03100151098;MAFB:-1.06698887245;TEAD1:-1.09769773781;ZNF238:-1.13670107806;TBP:-1.17607771183;NFATC1..3:-1.18827033177;SP1:-1.21388167455;IKZF1:-1.28676163872;FOXO1,3,4:-1.37618894968;IRF1,2:-1.41814709549;EBF1:-1.45674322666;TFAP4:-1.46254509387;IRF7:-1.47962293385;ESR1:-1.57088342769;TLX2:-1.57438551072;GCM1,2:-1.58017462112;HMX1:-1.60965014857;SPZ1:-1.62134890823;GLI1..3:-1.62206108778;ALX4:-1.68883745755;SRF:-1.82022966594;HSF1,2:-1.96491822015;TFCP2:-1.98502961508;STAT2,4,6:-2.03557153708;RXRA_VDR{dimer}:-2.0744041141 | |top_motifs=NANOG:3.28189506867;AHR_ARNT_ARNT2:2.84583300352;YY1:2.53935277457;BREu{core}:2.22815425639;POU6F1:2.21516437614;POU1F1:2.13093653615;FOXM1:2.05223480301;ZNF143:1.99906029401;STAT1,3:1.92970435234;PITX1..3:1.92274490106;LHX3,4:1.89962262085;PRRX1,2:1.89924766956;FOXP1:1.89632669697;ADNP_IRX_SIX_ZHX:1.8913665302;NRF1:1.88237086039;ELK1,4_GABP{A,B1}:1.85184774936;LEF1_TCF7_TCF7L1,2:1.84076983831;NKX6-1,2:1.72792726903;CDC5L:1.63178778191;NFY{A,B,C}:1.62016651912;PATZ1:1.61486912814;CRX:1.53077110486;CUX2:1.52524585891;GFI1:1.51075615073;SOX17:1.49881433202;FOX{I1,J2}:1.41947663102;NHLH1,2:1.40730533163;ZFP161:1.38770109017;SOX2:1.37150247076;OCT4_SOX2{dimer}:1.34763953815;TFDP1:1.34008303657;TOPORS:1.28719110893;E2F1..5:1.2823161337;MED-1{core}:1.25575921686;SOX{8,9,10}:1.24132448529;ARID5B:1.22029243298;MZF1:1.20622764795;AIRE:1.19227185332;NKX2-3_NKX2-5:1.12395560669;bHLH_family:1.11513470701;FOXA2:1.10838714905;RREB1:1.10773215398;ZIC1..3:1.07609318691;PAX3,7:1.04605801596;PAX4:1.0303212575;PAX5:1.00676536343;JUN:0.981632043962;RFX1:0.950924146551;RFX2..5_RFXANK_RFXAP:0.950862476668;REST:0.94005597358;VSX1,2:0.938144143518;TAL1_TCF{3,4,12}:0.921958616244;POU3F1..4:0.919319937258;HOXA9_MEIS1:0.897194622995;NKX2-1,4:0.879177496499;MTE{core}:0.878213013424;CREB1:0.850034018604;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.798643835174;TFAP2B:0.788109385586;GTF2I:0.763290374898;EVI1:0.723213958275;EGR1..3:0.713190023045;RBPJ:0.687386567627;ATF2:0.679090191485;RORA:0.672293181307;NR1H4:0.654174617559;ONECUT1,2:0.580041210481;MYB:0.545427600848;ATF4:0.540835904489;HIC1:0.511828955013;CDX1,2,4:0.49183434999;ATF5_CREB3:0.490408857936;GFI1B:0.479498071779;PAX6:0.477421847163;EN1,2:0.470225533491;TGIF1:0.462590820245;ZBTB16:0.46225970839;PAX1,9:0.460766263921;SOX5:0.451048312304;MYFfamily:0.434900579795;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.383614059801;BPTF:0.344995724887;PRDM1:0.34449098719;CEBPA,B_DDIT3:0.282978942265;MAZ:0.253488877032;PDX1:0.243431326717;GATA6:0.227906575016;ZNF384:0.182384633734;PBX1:0.174178591751;DBP:0.173110022533;ESRRA:0.159145808025;RXR{A,B,G}:0.142775856914;FOXD3:0.102409711878;POU2F1..3:0.0641839032569;TEF:0.0565475472658;HAND1,2:0.0531189383593;GATA4:0.0399218813271;MYOD1:0.0363091503404;HOX{A5,B5}:0.0343899054768;NR6A1:0.0255729976406;ZBTB6:0.0209554227928;HNF1A:-0.0132496604133;ZNF423:-0.0220952114417;PPARG:-0.0965398342734;MEF2{A,B,C,D}:-0.12227302406;HOX{A6,A7,B6,B7}:-0.122495677343;MYBL2:-0.12481474422;FOXL1:-0.133650601053;GTF2A1,2:-0.165890640926;FOXN1:-0.178033181417;HOX{A4,D4}:-0.182365186094;HIF1A:-0.190508216998;PAX8:-0.193958813961;KLF4:-0.200987915332;HBP1_HMGB_SSRP1_UBTF:-0.214890588217;SREBF1,2:-0.225693666435;FOXP3:-0.24388928509;POU5F1:-0.245745013214;HLF:-0.256730649443;TP53:-0.27498321889;ZEB1:-0.315417381523;STAT5{A,B}:-0.316713136703;NKX3-1:-0.341682778814;XCPE1{core}:-0.360970498519;LMO2:-0.379158268343;FOX{F1,F2,J1}:-0.380182329394;SMAD1..7,9:-0.381730709945;ALX1:-0.398284334101;AR:-0.406175622946;NR3C1:-0.420118544873;FOSL2:-0.421931047157;ELF1,2,4:-0.438076042644;NFIX:-0.447338779862;MTF1:-0.465902488245;NANOG{mouse}:-0.49316927708;NKX2-2,8:-0.504809722961;TBX4,5:-0.505520553121;PAX2:-0.508492982973;HMGA1,2:-0.533183431963;FOXQ1:-0.575923400416;SNAI1..3:-0.602200219119;NFIL3:-0.634302545173;IKZF2:-0.672207468766;NR5A1,2:-0.675150841274;NFKB1_REL_RELA:-0.683759788753;EP300:-0.687681572652;FOS_FOS{B,L1}_JUN{B,D}:-0.708165457188;UFEwm:-0.714068295594;HES1:-0.717080776056;NFE2:-0.720843639285;TLX1..3_NFIC{dimer}:-0.727533766935;DMAP1_NCOR{1,2}_SMARC:-0.729535812462;SPIB:-0.750416319112;BACH2:-0.767288535197;GZF1:-0.769869173983;HNF4A_NR2F1,2:-0.782638624189;ZNF148:-0.784954946448;T:-0.785559546372;NFE2L2:-0.795830062798;XBP1:-0.800066468367;RUNX1..3:-0.80202523952;SPI1:-0.853975335608;ATF6:-0.856371854416;FOX{D1,D2}:-0.901822345069;TFAP2{A,C}:-0.919938049036;NFE2L1:-0.951863556822;ETS1,2:-1.01834555481;NKX3-2:-1.03100151098;MAFB:-1.06698887245;TEAD1:-1.09769773781;ZNF238:-1.13670107806;TBP:-1.17607771183;NFATC1..3:-1.18827033177;SP1:-1.21388167455;IKZF1:-1.28676163872;FOXO1,3,4:-1.37618894968;IRF1,2:-1.41814709549;EBF1:-1.45674322666;TFAP4:-1.46254509387;IRF7:-1.47962293385;ESR1:-1.57088342769;TLX2:-1.57438551072;GCM1,2:-1.58017462112;HMX1:-1.60965014857;SPZ1:-1.62134890823;GLI1..3:-1.62206108778;ALX4:-1.68883745755;SRF:-1.82022966594;HSF1,2:-1.96491822015;TFCP2:-1.98502961508;STAT2,4,6:-2.03557153708;RXRA_VDR{dimer}:-2.0744041141 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10508-107D4;search_select_hide=table117:FF:10508-107D4 | |||
}} | }} |
Latest revision as of 14:27, 3 June 2020
Name: | neuroblastoma cell line:CHP-134 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11276 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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HumanCAGEScan Download raw sequence, BAM & CTSS | |||||||||||||||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11276
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11276
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.302 |
10 | 10 | 0.216 |
100 | 100 | 0.929 |
101 | 101 | 0.991 |
102 | 102 | 0.599 |
103 | 103 | 0.0844 |
104 | 104 | 0.39 |
105 | 105 | 0.661 |
106 | 106 | 0.00314 |
107 | 107 | 0.00565 |
108 | 108 | 0.66 |
109 | 109 | 0.0191 |
11 | 11 | 0.12 |
110 | 110 | 0.301 |
111 | 111 | 0.723 |
112 | 112 | 0.0655 |
113 | 113 | 0.78 |
114 | 114 | 0.0327 |
115 | 115 | 0.222 |
116 | 116 | 0.342 |
117 | 117 | 0.241 |
118 | 118 | 0.39 |
119 | 119 | 0.318 |
12 | 12 | 0.468 |
120 | 120 | 0.0551 |
121 | 121 | 0.906 |
122 | 122 | 0.604 |
123 | 123 | 0.0548 |
124 | 124 | 0.24 |
125 | 125 | 0.974 |
126 | 126 | 0.117 |
127 | 127 | 0.352 |
128 | 128 | 0.0336 |
129 | 129 | 0.261 |
13 | 13 | 0.0898 |
130 | 130 | 0.833 |
131 | 131 | 0.399 |
132 | 132 | 0.727 |
133 | 133 | 0.897 |
134 | 134 | 0.619 |
135 | 135 | 0.275 |
136 | 136 | 0.227 |
137 | 137 | 0.289 |
138 | 138 | 0.771 |
139 | 139 | 0.391 |
14 | 14 | 0.605 |
140 | 140 | 0.245 |
141 | 141 | 0.467 |
142 | 142 | 0.841 |
143 | 143 | 0.165 |
144 | 144 | 0.561 |
145 | 145 | 0.121 |
146 | 146 | 0.733 |
147 | 147 | 0.331 |
148 | 148 | 0.0339 |
149 | 149 | 0.0695 |
15 | 15 | 0.211 |
150 | 150 | 0.233 |
151 | 151 | 0.429 |
152 | 152 | 0.0554 |
153 | 153 | 0.777 |
154 | 154 | 0.952 |
155 | 155 | 0.736 |
156 | 156 | 0.818 |
157 | 157 | 0.236 |
158 | 158 | 0.419 |
159 | 159 | 0.0934 |
16 | 16 | 0.0996 |
160 | 160 | 0.12 |
161 | 161 | 0.71 |
162 | 162 | 0.741 |
163 | 163 | 0.16 |
164 | 164 | 0.0731 |
165 | 165 | 0.289 |
166 | 166 | 0.43 |
167 | 167 | 0.741 |
168 | 168 | 0.0281 |
169 | 169 | 0.0147 |
17 | 17 | 0.141 |
18 | 18 | 0.552 |
19 | 19 | 0.0798 |
2 | 2 | 0.246 |
20 | 20 | 0.962 |
21 | 21 | 0.533 |
22 | 22 | 0.0888 |
23 | 23 | 0.00223 |
24 | 24 | 0.162 |
25 | 25 | 0.662 |
26 | 26 | 0.06 |
27 | 27 | 0.265 |
28 | 28 | 0.902 |
29 | 29 | 0.148 |
3 | 3 | 0.141 |
30 | 30 | 0.311 |
31 | 31 | 0.485 |
32 | 32 | 0.00605 |
33 | 33 | 0.198 |
34 | 34 | 0.551 |
35 | 35 | 0.944 |
36 | 36 | 0.653 |
37 | 37 | 0.126 |
38 | 38 | 0.231 |
39 | 39 | 0.071 |
4 | 4 | 0.364 |
40 | 40 | 0.234 |
41 | 41 | 0.292 |
42 | 42 | 0.73 |
43 | 43 | 0.142 |
44 | 44 | 0.0662 |
45 | 45 | 0.376 |
46 | 46 | 0.209 |
47 | 47 | 0.525 |
48 | 48 | 0.313 |
49 | 49 | 0.405 |
5 | 5 | 0.161 |
50 | 50 | 0.45 |
51 | 51 | 0.456 |
52 | 52 | 0.0976 |
53 | 53 | 0.839 |
54 | 54 | 0.31 |
55 | 55 | 0.127 |
56 | 56 | 0.484 |
57 | 57 | 0.834 |
58 | 58 | 0.212 |
59 | 59 | 0.0309 |
6 | 6 | 0.927 |
60 | 60 | 0.0105 |
61 | 61 | 0.336 |
62 | 62 | 0.0945 |
63 | 63 | 0.153 |
64 | 64 | 0.836 |
65 | 65 | 0.13 |
66 | 66 | 0.171 |
67 | 67 | 0.63 |
68 | 68 | 0.75 |
69 | 69 | 0.567 |
7 | 7 | 0.226 |
70 | 70 | 0.0153 |
71 | 71 | 0.0734 |
72 | 72 | 0.124 |
73 | 73 | 0.0288 |
74 | 74 | 0.709 |
75 | 75 | 0.312 |
76 | 76 | 0.963 |
77 | 77 | 0.0391 |
78 | 78 | 0.125 |
79 | 79 | 0.0889 |
8 | 8 | 0.153 |
80 | 80 | 0.142 |
81 | 81 | 0.385 |
82 | 82 | 0.0989 |
83 | 83 | 0.155 |
84 | 84 | 0.435 |
85 | 85 | 0.0341 |
86 | 86 | 0.567 |
87 | 87 | 0.185 |
88 | 88 | 0.705 |
89 | 89 | 0.0258 |
9 | 9 | 0.183 |
90 | 90 | 0.701 |
91 | 91 | 0.34 |
92 | 92 | 0.082 |
93 | 93 | 0.873 |
94 | 94 | 0.29 |
95 | 95 | 0.0952 |
96 | 96 | 0.418 |
97 | 97 | 0.737 |
98 | 98 | 0.339 |
99 | 99 | 0.241 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11276
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102989 CHP-134 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000333 (migratory neural crest cell)
0000003 (native cell)
0000548 (animal cell)
0002321 (embryonic cell)
0000219 (motile cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
171 (neuroectodermal tumor)
3095 (germ cell and embryonal cancer)
2994 (germ cell cancer)
169 (neuroendocrine tumor)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000013 (sympathetic nervous system)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0002410 (autonomic nervous system)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0000010 (peripheral nervous system)
0001016 (nervous system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100932 (neuroblastoma cell line sample)
0102989 (CHP-134 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)