FF:10514-107E1: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005005 | |DRA_sample_Accession=CAGE@SAMD00005005 | ||
|accession_numbers=CAGE;DRX007930;DRR008802;DRZ000227;DRZ001612 | |accession_numbers=CAGE;DRX007930;DRR008802;DRZ000227;DRZ001612;DRZ011577;DRZ012962 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0002416 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0002416 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase= | |data_phase=2 | ||
|datafreeze_phase= | |datafreeze_phase=2 | ||
|def= | |def= | ||
|expression_enrichment_score=chr1:158985493..158985535,+!p4@IFI16!2.43!400.51!IFI16;;chr22:38380543..38380569,-!p1@SOX10!2.41!257.80!SOX10;;chr3:69985734..69985749,+!p2@MITF!2.17!145.58!MITF;;chr2:223163706..223163730,-!p1@PAX3!1.84!67.48!PAX3;;chr1:158985553..158985574,+!p14@IFI16!1.74!53.53!IFI16;;chr1:158975744..158975769,+!p10@IFI16!1.71!50.04!IFI16;;chr6:10415276..10415341,-!p2@TFAP2A!1.63!50.35!TFAP2A;;chr1:158985457..158985468,+!p12@IFI16!1.58!36.70!IFI16;;chr3:69985792..69985803,+!p7@MITF!1.57!35.94!MITF;;chr20:50179368..50179392,-!p2@NFATC2!1.53!42.16!NFATC2;;chr1:158985469..158985489,+!p7@IFI16!1.53!38.82!IFI16;;chr15:42749722..42749739,-!p2@ZFP106!1.50!54.14!ZFP106;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.47!28.51!ZBED1;;chr11:125034640..125034655,+!p1@PKNOX2!1.42!25.33!PKNOX2;;chr17:41622925..41622976,-!p3@ETV4!1.40!35.64!ETV4;;chr10:111987079..111987115,+!p3@MXI1!1.37!30.78!MXI1;;chr6:391743..391759,+!p1@IRF4!1.36!21.69!IRF4;;chr6:10412600..10412637,-!p1@TFAP2A!1.35!35.33!TFAP2A;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.31!19.41!EN2;;chr1:158985536..158985545,+!p18@IFI16!1.31!19.41!IFI16;;chr7:27179814..27179840,-!p4@HOXA3!1.30!19.11!HOXA3;;chr9:73029219..73029289,-!p2@KLF9!1.29!55.20!KLF9;;chr8:22550982..22550999,-!p1@EGR3!1.26!48.22!EGR3;;chr6:10412392..10412409,-!p4@TFAP2A!1.25!19.11!TFAP2A;;chr17:59477233..59477263,+!p1@TBX2!1.24!50.50!TBX2;;chr1:25256756..25256774,-!p1@RUNX3!1.22!29.27!RUNX3;;chr13:46626764..46626775,-!p16@ZC3H13!1.22!15.62!ZC3H13;;chr11:120107344..120107351,+!p1@POU2F3!1.20!17.89!POU2F3;;chr2:172949484..172949522,+!p1@DLX1!1.20!14.86!DLX1;;chr7:27183291..27183324,-!p1@HOXA5!1.20!14.86!HOXA5;;chr7:27183263..27183284,-!p2@HOXA5!1.20!14.71!HOXA5;;chr1:63788229..63788250,+!p1@FOXD3!1.18!14.26!FOXD3;;chr12:66218598..66218645,+!p2@HMGA2!1.17!62.93!HMGA2;;chr8:11561684..11561751,+!p1@GATA4!1.16!13.50!GATA4;;chr6:10415484..10415508,-!p3@TFAP2A!1.15!13.19!TFAP2A;;chr20:50179584..50179611,-!p6@NFATC2!1.14!12.89!NFATC2;;chr2:176994408..176994492,+!p1@HOXD8!1.13!12.44!HOXD8;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.11!11.83!HOXC5;;chr12:66218836..66218888,+!p1@HMGA2!1.08!102.67!HMGA2;;chr1:158969752..158969780,+!p6@IFI16!1.07!18.65!IFI16;;chr3:185826855..185826911,-!p1@ETV5!1.06!286.62!ETV5;;chr17:46688334..46688385,-!p1@HOXB7!1.04!14.41!HOXB7;;chr13:46626794..46626801,-!p17@ZC3H13!1.04!10.01!ZC3H13;;chr1:120190786..120190915,-!p1@ZNF697!1.03!71.88!ZNF697;;chr14:75988771..75988826,+!p1@BATF!1.01!12.28!BATF;;chr11:125034605..125034636,+!p2@PKNOX2!1.01!9.25!PKNOX2;;chr12:52445218..52445237,+!p1@NR4A1!1.00!116.31!NR4A1;;chr2:172967621..172967637,-!p1@DLX2!1.00!24.87!DLX2;;chr17:46682321..46682362,-!p1@HOXB6!1.00!8.95!HOXB6;;chr17:41622765..41622821,-!p2@ETV4!0.99!13.65!ETV4;;chr3:52001448..52001478,-!p2@PCBP4!0.98!121.02!PCBP4;;chr15:80696703..80696754,+!p1@ARNT2!0.98!11.53!ARNT2;;chr13:46626824..46626835,-!p8@ZC3H13!0.97!10.62!ZC3H13;;chr6:29648890..29648944,-!p1@ZFP57!0.96!8.19!ZFP57;;chr12:85673977..85674015,+!p1@ALX1!0.96!8.04!ALX1;;chr1:158985686..158985719,+!p15@IFI16!0.96!8.04!IFI16;;chr5:88178983..88179012,-!p1@MEF2C!0.95!63.24!MEF2C;;chr7:27153454..27153469,-!p2@HOXA3!0.95!7.89!HOXA3;;chr7:27179852..27179863,-!p10@HOXA3!0.94!7.73!HOXA3;;chr12:57914286..57914304,-!p1@DDIT3!0.90!265.84!DDIT3;;chr17:59477275..59477286,+!p3@TBX2!0.90!9.40!TBX2;;chr17:46703687..46703740,-!p1@HOXB9!0.89!6.82!HOXB9;;chr6:10412576..10412599,-!p5@TFAP2A!0.89!6.82!TFAP2A;;chr22:22874610..22874616,-!p1@ZNF280A!0.88!6.67!ZNF280A;;chr11:16133391..16133439,-!p6@SOX6!0.88!6.67!SOX6;;chr21:34398234..34398250,+!p1@OLIG2!0.87!6.37!OLIG2;;chr2:172950227..172950249,+!p2@DLX1!0.86!6.22!DLX1;;chr12:53614115..53614154,-!p1@RARG!0.85!34.58!RARG;;chr3:25470062..25470084,+!p4@RARB!0.85!6.07!RARB;;chr17:70117153..70117174,+!p1@SOX9!0.84!64.75!SOX9;;chr2:239148671..239148686,-!p1@HES6!0.84!22.90!HES6;;chr3:52001426..52001447,-!p3@PCBP4!0.84!17.74!PCBP4;;chr7:27135591..27135658,-!p1@HOXA1!0.84!11.83!HOXA1;;chr8:80679993..80680011,-!p1@HEY1!0.84!8.80!HEY1;;chr17:46622205..46622218,-!p3@HOXB2!0.84!6.98!HOXB2;;chr2:85987839..85987846,+!p20@ATOH8!0.84!5.91!ATOH8;;chr9:73028598..73028617,-!p5@KLF9!0.83!10.31!KLF9;;chr17:46703212..46703238,-!p2@HOXB9!0.83!5.76!HOXB9;;chr2:145277640..145277771,-!p1@ZEB2!0.82!80.83!ZEB2;;chr6:126102292..126102329,+!p3@NCOA7!0.82!19.71!NCOA7;;chr12:66218255..66218304,+!p3@HMGA2!0.82!16.07!HMGA2;;chr17:41622834..41622883,-!p6@ETV4!0.82!6.98!ETV4;;chr16:67198633..67198671,+!p1@HSF4!0.82!5.61!HSF4;;chr12:54402745..54402788,+!p1@HOXC8!0.82!5.61!HOXC8;;chr9:73028814..73028895,-!p1@KLF9!0.81!57.93!KLF9;;chr17:41623692..41623715,-!p1@ETV4!0.81!25.17!ETV4;;chr5:321810..321877,+!p1@AHRR!0.81!18.50!AHRR;;chr21:30671690..30671762,+!p2@BACH1!0.80!19.26!BACH1;;chr12:66218212..66218244,+!p5@HMGA2!0.80!8.04!HMGA2;;chr12:54447637..54447659,+!p4@HOXC4!0.80!5.31!HOXC4;;chr17:46687959..46688007,-!p2@HOXB7!0.79!7.28!HOXB7;;chr11:16629261..16629284,-!p1@SOX6!0.79!5.16!SOX6;;chr12:6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| |expression_enrichment_score=chr1:158985493..158985535,+!p4@IFI16!2.43!400.51!IFI16;;chr22:38380543..38380569,-!p1@SOX10!2.41!257.80!SOX10;;chr3:69985734..69985749,+!p2@MITF!2.17!145.58!MITF;;chr2:223163706..223163730,-!p1@PAX3!1.84!67.48!PAX3;;chr1:158985553..158985574,+!p14@IFI16!1.74!53.53!IFI16;;chr1:158975744..158975769,+!p10@IFI16!1.71!50.04!IFI16;;chr6:10415276..10415341,-!p2@TFAP2A!1.63!50.35!TFAP2A;;chr1:158985457..158985468,+!p12@IFI16!1.58!36.70!IFI16;;chr3:69985792..69985803,+!p7@MITF!1.57!35.94!MITF;;chr20:50179368..50179392,-!p2@NFATC2!1.53!42.16!NFATC2;;chr1:158985469..158985489,+!p7@IFI16!1.53!38.82!IFI16;;chr15:42749722..42749739,-!p2@ZFP106!1.50!54.14!ZFP106;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.47!28.51!ZBED1;;chr11:125034640..125034655,+!p1@PKNOX2!1.42!25.33!PKNOX2;;chr17:41622925..41622976,-!p3@ETV4!1.40!35.64!ETV4;;chr10:111987079..111987115,+!p3@MXI1!1.37!30.78!MXI1;;chr6:391743..391759,+!p1@IRF4!1.36!21.69!IRF4;;chr6:10412600..10412637,-!p1@TFAP2A!1.35!35.33!TFAP2A;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.31!19.41!EN2;;chr1:158985536..158985545,+!p18@IFI16!1.31!19.41!IFI16;;chr7:27179814..27179840,-!p4@HOXA3!1.30!19.11!HOXA3;;chr9:73029219..73029289,-!p2@KLF9!1.29!55.20!KLF9;;chr8:22550982..22550999,-!p1@EGR3!1.26!48.22!EGR3;;chr6:10412392..10412409,-!p4@TFAP2A!1.25!19.11!TFAP2A;;chr17:59477233..59477263,+!p1@TBX2!1.24!50.50!TBX2;;chr1:25256756..25256774,-!p1@RUNX3!1.22!29.27!RUNX3;;chr13:46626764..46626775,-!p16@ZC3H13!1.22!15.62!ZC3H13;;chr11:120107344..120107351,+!p1@POU2F3!1.20!17.89!POU2F3;;chr2:172949484..172949522,+!p1@DLX1!1.20!14.86!DLX1;;chr7:27183291..27183324,-!p1@HOXA5!1.20!14.86!HOXA5;;chr7:27183263..27183284,-!p2@HOXA5!1.20!14.71!HOXA5;;chr1:63788229..63788250,+!p1@FOXD3!1.18!14.26!FOXD3;;chr12:66218598..66218645,+!p2@HMGA2!1.17!62.93!HMGA2;;chr8:11561684..11561751,+!p1@GATA4!1.16!13.50!GATA4;;chr6:10415484..10415508,-!p3@TFAP2A!1.15!13.19!TFAP2A;;chr20:50179584..50179611,-!p6@NFATC2!1.14!12.89!NFATC2;;chr2:176994408..176994492,+!p1@HOXD8!1.13!12.44!HOXD8;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.11!11.83!HOXC5;;chr12:66218836..66218888,+!p1@HMGA2!1.08!102.67!HMGA2;;chr1:158969752..158969780,+!p6@IFI16!1.07!18.65!IFI16;;chr3:185826855..185826911,-!p1@ETV5!1.06!286.62!ETV5;;chr17:46688334..46688385,-!p1@HOXB7!1.04!14.41!HOXB7;;chr13:46626794..46626801,-!p17@ZC3H13!1.04!10.01!ZC3H13;;chr1:120190786..120190915,-!p1@ZNF697!1.03!71.88!ZNF697;;chr14:75988771..75988826,+!p1@BATF!1.01!12.28!BATF;;chr11:125034605..125034636,+!p2@PKNOX2!1.01!9.25!PKNOX2;;chr12:52445218..52445237,+!p1@NR4A1!1.00!116.31!NR4A1;;chr2:172967621..172967637,-!p1@DLX2!1.00!24.87!DLX2;;chr17:46682321..46682362,-!p1@HOXB6!1.00!8.95!HOXB6;;chr17:41622765..41622821,-!p2@ETV4!0.99!13.65!ETV4;;chr3:52001448..52001478,-!p2@PCBP4!0.98!121.02!PCBP4;;chr15:80696703..80696754,+!p1@ARNT2!0.98!11.53!ARNT2;;chr13:46626824..46626835,-!p8@ZC3H13!0.97!10.62!ZC3H13;;chr6:29648890..29648944,-!p1@ZFP57!0.96!8.19!ZFP57;;chr12:85673977..85674015,+!p1@ALX1!0.96!8.04!ALX1;;chr1:158985686..158985719,+!p15@IFI16!0.96!8.04!IFI16;;chr5:88178983..88179012,-!p1@MEF2C!0.95!63.24!MEF2C;;chr7:27153454..27153469,-!p2@HOXA3!0.95!7.89!HOXA3;;chr7:27179852..27179863,-!p10@HOXA3!0.94!7.73!HOXA3;;chr12:57914286..57914304,-!p1@DDIT3!0.90!265.84!DDIT3;;chr17:59477275..59477286,+!p3@TBX2!0.90!9.40!TBX2;;chr17:46703687..46703740,-!p1@HOXB9!0.89!6.82!HOXB9;;chr6:10412576..10412599,-!p5@TFAP2A!0.89!6.82!TFAP2A;;chr22:22874610..22874616,-!p1@ZNF280A!0.88!6.67!ZNF280A;;chr11:16133391..16133439,-!p6@SOX6!0.88!6.67!SOX6;;chr21:34398234..34398250,+!p1@OLIG2!0.87!6.37!OLIG2;;chr2:172950227..172950249,+!p2@DLX1!0.86!6.22!DLX1;;chr12:53614115..53614154,-!p1@RARG!0.85!34.58!RARG;;chr3:25470062..25470084,+!p4@RARB!0.85!6.07!RARB;;chr17:70117153..70117174,+!p1@SOX9!0.84!64.75!SOX9;;chr2:239148671..239148686,-!p1@HES6!0.84!22.90!HES6;;chr3:52001426..52001447,-!p3@PCBP4!0.84!17.74!PCBP4;;chr7:27135591..27135658,-!p1@HOXA1!0.84!11.83!HOXA1;;chr8:80679993..80680011,-!p1@HEY1!0.84!8.80!HEY1;;chr17:46622205..46622218,-!p3@HOXB2!0.84!6.98!HOXB2;;chr2:85987839..85987846,+!p20@ATOH8!0.84!5.91!ATOH8;;chr9:73028598..73028617,-!p5@KLF9!0.83!10.31!KLF9;;chr17:46703212..46703238,-!p2@HOXB9!0.83!5.76!HOXB9;;chr2:145277640..145277771,-!p1@ZEB2!0.82!80.83!ZEB2;;chr6:126102292..126102329,+!p3@NCOA7!0.82!19.71!NCOA7;;chr12:66218255..66218304,+!p3@HMGA2!0.82!16.07!HMGA2;;chr17:41622834..41622883,-!p6@ETV4!0.82!6.98!ETV4;;chr16:67198633..67198671,+!p1@HSF4!0.82!5.61!HSF4;;chr12:54402745..54402788,+!p1@HOXC8!0.82!5.61!HOXC8;;chr9:73028814..73028895,-!p1@KLF9!0.81!57.93!KLF9;;chr17:41623692..41623715,-!p1@ETV4!0.81!25.17!ETV4;;chr5:321810..321877,+!p1@AHRR!0.81!18.50!AHRR;;chr21:30671690..30671762,+!p2@BACH1!0.80!19.26!BACH1;;chr12:66218212..66218244,+!p5@HMGA2!0.80!8.04!HMGA2;;chr12:54447637..54447659,+!p4@HOXC4!0.80!5.31!HOXC4;;chr17:46687959..46688007,-!p2@HOXB7!0.79!7.28!HOXB7;;chr11:16629261..16629284,-!p1@SOX6!0.79!5.16!SOX6;;chr12:66218378..66218401,+!p6@HMGA2!0.78!8.04!HMGA2;;chr5:172662197..172662216,-!p1@NKX2-5!0.78!5.00!NKX2-5;;chr4:109088940..109089037,-!p4@LEF1!0.78!5.00!LEF1;;chr12:125002827..125002855,-!p5@NCOR2!0.77!7.13!NCOR2;;chr16:1031762..1031781,+!p1@SOX8!0.77!4.85!SOX8;;chr2:71127699..71127744,+!p1@VAX2!0.76!10.46!VAX2;;chr15:77713299..77713316,+!p3@HMG20A!0.75!7.58!HMG20A;;chr3:141087339..141087387,+!p2@ZBTB38!0.74!51.56!ZBTB38;;chr7:28448965..28448994,+!p2@CREB5!0.74!17.44!CREB5;;chr13:41635029..41635044,-!p4@ELF1!0.74!10.16!ELF1;;chr2:74730430..74730451,-!p1@LBX2!0.74!7.73!LBX2;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.73!46.71!ZNF595;;chr7:19157248..19157268,-!p1@TWIST1!0.73!13.04!TWIST1;;chr17:59477197..59477212,+!p2@TBX2!0.73!7.89!TBX2;;chr12:66218573..66218596,+!p7@HMGA2!0.73!6.82!HMGA2;;chr12:54393880..54393962,+!p1@HOXC9!0.73!4.40!HOXC9;;chr2:157189180..157189290,-!p1@NR4A2!0.72!24.72!NR4A2;;chr12:66218183..66218209,+!p4@HMGA2!0.72!8.64!HMGA2;;chr9:73028638..73028650,-!p7@KLF9!0.72!7.13!KLF9;;chr2:85987891..85987897,+!p22@ATOH8!0.72!4.25!ATOH8;;chr1:165414325..165414369,-!p1@RXRG!0.72!4.25!RXRG;;chr19:45971246..45971265,+!p1@FOSB!0.71!87.20!FOSB;;chr22:38597987..38598021,+!p2@MAFF!0.71!28.51!MAFF;;chr3:178789220..178789255,-!p6@ZMAT3!0.71!4.09!ZMAT3;;chr17:46659728..46659749,-!p3@HOXB3!0.71!4.09!HOXB3;;chr7:27170359..27170381,-!p1@HOXA4!0.71!4.09!HOXA4;;chr12:24715376..24715432,-!p1@SOX5!0.70!5.31!SOX5;;chr12:66218443..66218461,+!p8@HMGA2!0.70!5.31!HMGA2;;chr1:158979872..158979898,+!p3@IFI16!0.69!13.35!IFI16;;chr12:85674018..85674039,+!p3@ALX1!0.69!3.94!ALX1;;chr6:10415263..10415274,-!p8@TFAP2A!0.69!3.94!TFAP2A;;chr5:124082322..124082364,-!p1@ZNF608!0.68!10.62!ZNF608;;chr16:79634595..79634620,-!p2@MAF!0.68!7.43!MAF;;chr3:193853927..193853944,+!p1@HES1!0.67!137.85!HES1;;chr15:57511609..57511651,+!p2@TCF12!0.67!6.67!TCF12;;chr12:54447599..54447630,+!p3@HOXC4!0.67!4.70!HOXC4;;chr12:52431016..52431071,+!p4@NR4A1!0.67!4.40!NR4A1;;chr17:46622229..46622257,-!p6@HOXB2!0.67!4.40!HOXB2;;chr17:17740287..17740307,-!p1@SREBF1!0.66!109.64!SREBF1;;chr9:102584262..102584276,+!p1@NR4A3!0.66!8.80!NR4A3;;chr13:27998854..27998866,+!p3@GTF3A!0.66!7.89!GTF3A;;chr12:125002861..125002894,-!p7@NCOR2!0.66!5.61!NCOR2;;chr1:246729544..246729572,-!p1@TFB2M!0.65!39.88!TFB2M;;chr1:246729483..246729538,-!p2@TFB2M!0.65!38.67!TFB2M;;chr16:79634624..79634642,-!p1@MAF!0.65!15.47!MAF;;chr12:54394059..54394088,+!p3@HOXC9!0.65!3.49!HOXC9;;chr4:109089901..109089930,-!p3@LEF1!0.65!3.49!LEF1;;chr12:77459306..77459365,-!p1@E2F7!0.64!48.98!E2F7;;chr4:146859927..146860055,-!p1@ZNF827!0.64!23.96!ZNF827;;chr7:19157043..19157088,-!p2@TWIST1!0.64!9.55!TWIST1;;chr17:38498510..38498540,+!p7@RARA!0.64!4.09!RARA;;chr7:27153428..27153440,-!p3@HOXA3!0.64!3.34!HOXA3;;chr7:27183114..27183138,-!p3@HOXA5!0.64!3.34!HOXA5;;chr7:27183325..27183338,-!p5@HOXA5!0.64!3.34!HOXA5;;chr9:1050331..1050363,+!p1@DMRT2!0.64!3.34!DMRT2;;chr3:185784049..185784050,-!p7@ETV5!0.64!3.34!ETV5;;chr1:158985723..158985746,+!p20@IFI16!0.64!3.34!IFI16;;chr9:73028332..73028385,-!p3@KLF9!0.63!13.04!KLF9;;chr2:145277882..145277967,-!p3@ZEB2!0.63!6.22!ZEB2;;chr13:27998871..27998884,+!p4@GTF3A!0.63!5.46!GTF3A;;chr3:126076242..126076257,-!p1@KLF15!0.62!4.09!KLF15;;chr4:146860163..146860188,-!p5@ZNF827!0.62!3.64!ZNF827;;chr17:46703528..46703549,-!p5@HOXB9!0.62!3.18!HOXB9;;chr6:126102339..126102351,+!p12@NCOA7!0.62!3.18!NCOA7;;chr12:66218003..66218018,+!p9@HMGA2!0.61!3.94!HMGA2;;chr12:24102576..24102623,-!p2@SOX5!0.61!3.03!SOX5;;chr12:54332608..54332636,+!p1@HOXC13!0.61!3.03!HOXC13;;chr12:66218420..66218439,+!p12@HMGA2!0.61!3.03!HMGA2;;chr17:46687935..46687950,-!p3@HOXB7!0.61!3.03!HOXB7;;chr17:46688310..46688323,-!p4@HOXB7!0.61!3.03!HOXB7;;chr1:75602043..75602093,+!p1@LHX8!0.61!3.03!LHX8;;chr3:141151009..141151033,+!p10@ZBTB38!0.61!3.03!ZBTB38;;chr17:41623259..41623278,-!p7@ETV4!0.60!3.64!ETV4;;chr7:27779729..27779819,+!p1@TAX1BP1!0.59!224.59!TAX1BP1;;chr3:178789566..178789620,-!p1@ZMAT3!0.59!62.33!ZMAT3;;chr8:49833948..49833973,-!p2@SNAI2!0.59!22.14!SNAI2;;chr10:63809013..63809041,+!p3@ARID5B!0.59!19.26!ARID5B;;chr7:14029283..14029311,-!p1@ETV1!0.59!18.35!ETV1;;chr17:38498594..38498661,+!p2@RARA!0.59!11.22!RARA;;chr3:52001396..52001425,-!p4@PCBP4!0.59!5.76!PCBP4;;chr3:25469724..25469773,+!p1@RARB!0.59!4.55!RARB;;chr2:172967353..172967365,-!p5@DLX2!0.59!2.88!DLX2;;chr17:46690839..46690884,-!p1@HOXB8!0.59!2.88!HOXB8;;chr17:46806067..46806097,-!p1@HOXB13!0.59!2.88!HOXB13;;chr11:125034586..125034604,+!p3@PKNOX2!0.59!2.88!PKNOX2;;chr20:50179425..50179434,-!p7@NFATC2!0.59!2.88!NFATC2;;chr3:69788576..69788648,+!p1@MITF!0.58!17.89!MITF;;chr7:150945754..150945789,-!p2@SMARCD3!0.58!10.16!SMARCD3;;chr14:33408072..33408114,+!p2@NPAS3!0.58!3.49!NPAS3;;chr3:157823517..157823562,-!p1@SHOX2!0.58!3.03!SHOX2;;chr5:137804484..137804498,+!p2@EGR1!0.57!13.04!EGR1;;chr8:102217679..102217719,-!p2@ZNF706!0.57!11.07!ZNF706;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.57!6.82!SOHLH2;;chr7:113726357..113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| ||
Line 41: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/melanoma%2520cell%2520line%253aCOLO%2520679.CNhs11281.10514-107E1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/melanoma%2520cell%2520line%253aCOLO%2520679.CNhs11281.10514-107E1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/melanoma%2520cell%2520line%253aCOLO%2520679.CNhs11281.10514-107E1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/melanoma%2520cell%2520line%253aCOLO%2520679.CNhs11281.10514-107E1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/melanoma%2520cell%2520line%253aCOLO%2520679.CNhs11281.10514-107E1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10514-107E1 | |id=FF:10514-107E1 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0100849 | |is_a=EFO:0002091;;FF:0000210;;FF:0100849 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11281 | |library_id=CNhs11281 | ||
|library_id_phase_based= | |library_id_phase_based=2:CNhs11281 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10514 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10514 | |||
|name=melanoma cell line:COLO 679 | |name=melanoma cell line:COLO 679 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 51: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11281,LSID759,release008,COMPLETED | |profile_hcage=CNhs11281,LSID759,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 65: | Line 75: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.07E+03 | ||
|rna_weight_ug=62.37925 | |rna_weight_ug=62.37925 | ||
|sample_age=47 | |sample_age=47 | ||
Line 90: | Line 100: | ||
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:3.13666928814;bHLH_family:2.89801511419;ESRRA:1.68976229363;SREBF1,2:1.66677089602;CDC5L:1.58470903737;ELK1,4_GABP{A,B1}:1.56986205672;PRRX1,2:1.56425275168;PAX4:1.55910456632;EN1,2:1.52877130503;HOX{A6,A7,B6,B7}:1.52745885692;POU6F1:1.49518598598;NR5A1,2:1.46151894488;HOX{A4,D4}:1.41800464703;PAX8:1.38706220849;CRX:1.30150020294;HES1:1.21623101418;NR3C1:1.08529267703;PAX1,9:1.01138961129;NFIX:1.00877460393;NKX2-1,4:0.976383856842;RXR{A,B,G}:0.949451872959;SOX{8,9,10}:0.934585710046;FOX{F1,F2,J1}:0.886151430816;PAX6:0.790782742127;NRF1:0.751524577537;ZBTB16:0.741272848912;POU2F1..3:0.738722061906;FOXA2:0.722622915032;PBX1:0.710242029281;PAX2:0.704189224331;TOPORS:0.688550287889;OCT4_SOX2{dimer}:0.679885192186;ZNF143:0.655114149007;ARID5B:0.618142601406;TEF:0.615795976988;NANOG:0.611721020111;NFY{A,B,C}:0.580717394525;NFE2L1:0.573878114521;ELF1,2,4:0.573327440031;GFI1:0.556954347827;RORA:0.536454890042;YY1:0.525430687818;AHR_ARNT_ARNT2:0.50332153348;VSX1,2:0.452744519494;LHX3,4:0.443271054794;MYB:0.433966596487;STAT5{A,B}:0.433314173929;AIRE:0.428225652874;NFIL3:0.427443659249;SOX17:0.399524309441;CREB1:0.381568920594;E2F1..5:0.376289832545;TFDP1:0.34420309935;ATF4:0.312131107556;FOXQ1:0.309218815741;ATF5_CREB3:0.303429271041;PPARG:0.298456883162;ZNF423:0.298131540389;POU1F1:0.29528751736;GZF1:0.293446543859;CEBPA,B_DDIT3:0.287076943249;JUN:0.278173658757;TLX2:0.269079562198;SOX5:0.210273675658;RBPJ:0.209602057266;FOXP1:0.198071469236;SOX2:0.188468025794;REST:0.184542824295;MEF2{A,B,C,D}:0.175722138697;NKX2-3_NKX2-5:0.172068626;HOX{A5,B5}:0.170954837075;EVI1:0.159823505245;EGR1..3:0.146841892671;TLX1..3_NFIC{dimer}:0.140649558786;HNF4A_NR2F1,2:0.129267415416;FOXM1:0.11777769857;XBP1:0.108618417595;HIC1:0.0973258292768;NKX3-2:0.0869456841115;FOXD3:0.081570090622;TBX4,5:0.0396893963267;NKX2-2,8:0.0323457741179;ZNF384:0.012125794145;BREu{core}:0.0110507918269;MAFB:0.00681292152005;POU3F1..4:-0.00637774734138;GATA6:-0.0152390644996;NR1H4:-0.0162871024058;LEF1_TCF7_TCF7L1,2:-0.0362043779946;HLF:-0.0372303296626;MYFfamily:-0.0400951500198;IKZF2:-0.0510210704655;STAT1,3:-0.0546328493755;GATA4:-0.0602247224917;FOSL2:-0.0633648631657;IKZF1:-0.071817785433;XCPE1{core}:-0.0755919115041;CUX2:-0.0777701905671;TFAP2{A,C}:-0.0815669867938;TGIF1:-0.0863819900476;RFX2..5_RFXANK_RFXAP:-0.0902431360845;HIF1A:-0.0913133021794;SP1:-0.104611762599;RUNX1..3:-0.111955517831;UFEwm:-0.114873336558;NFE2:-0.122922256438;FOX{D1,D2}:-0.12624534991;DMAP1_NCOR{1,2}_SMARC:-0.129312385705;PRDM1:-0.134643313643;ALX4:-0.136501970909;NKX6-1,2:-0.162121100149;RFX1:-0.181509919077;TFAP2B:-0.190722413938;SPI1:-0.204473130483;PDX1:-0.212574670678;BACH2:-0.220467656494;T:-0.221932857612;ZIC1..3:-0.229318868231;FOXP3:-0.229955361901;NHLH1,2:-0.230401078758;ESR1:-0.232849189206;TEAD1:-0.262908803963;SPIB:-0.271912573657;ZFP161:-0.275247170302;FOS_FOS{B,L1}_JUN{B,D}:-0.278579156626;ZBTB6:-0.279961874359;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.281866185739;GTF2I:-0.287120958528;PAX3,7:-0.295523209524;ADNP_IRX_SIX_ZHX:-0.301933621592;HNF1A:-0.311719758374;DBP:-0.311838539781;MED-1{core}:-0.317161819506;AR:-0.321010884587;TP53:-0.325728538151;STAT2,4,6:-0.327886724129;FOX{I1,J2}:-0.331969306547;IRF1,2:-0.352036365193;MAZ:-0.353055692234;ONECUT1,2:-0.376447421464;GFI1B:-0.381915173159;ETS1,2:-0.382525910391;FOXL1:-0.38368763435;NFKB1_REL_RELA:-0.386990618168;MZF1:-0.396349727082;MYBL2:-0.398037654671;IRF7:-0.405526804385;FOXN1:-0.418344728746;NANOG{mouse}:-0.428445089638;PAX5:-0.446545700118;ATF2:-0.448470217325;SMAD1..7,9:-0.45345455308;BPTF:-0.462742763322;EBF1:-0.474768846219;GCM1,2:-0.478719461729;MTE{core}:-0.479565861904;TBP:-0.495296417985;SNAI1..3:-0.495477458687;POU5F1:-0.527937662661;SPZ1:-0.554487501872;PATZ1:-0.554661732926;ZEB1:-0.561571974236;NFATC1..3:-0.567931476729;KLF4:-0.570989050569;RREB1:-0.613529435097;GTF2A1,2:-0.621694737127;PITX1..3:-0.655955353675;ZNF148:-0.663247734936;TFCP2:-0.679075716384;GLI1..3:-0.704086789925;MYOD1:-0.710443625173;NFE2L2:-0.745248219404;HBP1_HMGB_SSRP1_UBTF:-0.749882213924;FOXO1,3,4:-0.770904257065;HSF1,2:-0.775285988346;HOXA9_MEIS1:-0.782631479076;CDX1,2,4:-0.799149086223;LMO2:-0.809535030938;SRF:-0.810233357519;HMGA1,2:-0.917799999498;ZNF238:-0.934825760402;TAL1_TCF{3,4,12}:-0.95231638609;MTF1:-0.966629352667;NKX3-1:-1.08141359011;ATF6:-1.11531480572;EP300:-1.14428365047;ALX1:-1.17595518614;HAND1,2:-1.33857840491;NR6A1:-1.34317387831;TFAP4:-1.35270443458;HMX1:-1.62752475776;RXRA_VDR{dimer}:-2.14932336603 | |top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:3.13666928814;bHLH_family:2.89801511419;ESRRA:1.68976229363;SREBF1,2:1.66677089602;CDC5L:1.58470903737;ELK1,4_GABP{A,B1}:1.56986205672;PRRX1,2:1.56425275168;PAX4:1.55910456632;EN1,2:1.52877130503;HOX{A6,A7,B6,B7}:1.52745885692;POU6F1:1.49518598598;NR5A1,2:1.46151894488;HOX{A4,D4}:1.41800464703;PAX8:1.38706220849;CRX:1.30150020294;HES1:1.21623101418;NR3C1:1.08529267703;PAX1,9:1.01138961129;NFIX:1.00877460393;NKX2-1,4:0.976383856842;RXR{A,B,G}:0.949451872959;SOX{8,9,10}:0.934585710046;FOX{F1,F2,J1}:0.886151430816;PAX6:0.790782742127;NRF1:0.751524577537;ZBTB16:0.741272848912;POU2F1..3:0.738722061906;FOXA2:0.722622915032;PBX1:0.710242029281;PAX2:0.704189224331;TOPORS:0.688550287889;OCT4_SOX2{dimer}:0.679885192186;ZNF143:0.655114149007;ARID5B:0.618142601406;TEF:0.615795976988;NANOG:0.611721020111;NFY{A,B,C}:0.580717394525;NFE2L1:0.573878114521;ELF1,2,4:0.573327440031;GFI1:0.556954347827;RORA:0.536454890042;YY1:0.525430687818;AHR_ARNT_ARNT2:0.50332153348;VSX1,2:0.452744519494;LHX3,4:0.443271054794;MYB:0.433966596487;STAT5{A,B}:0.433314173929;AIRE:0.428225652874;NFIL3:0.427443659249;SOX17:0.399524309441;CREB1:0.381568920594;E2F1..5:0.376289832545;TFDP1:0.34420309935;ATF4:0.312131107556;FOXQ1:0.309218815741;ATF5_CREB3:0.303429271041;PPARG:0.298456883162;ZNF423:0.298131540389;POU1F1:0.29528751736;GZF1:0.293446543859;CEBPA,B_DDIT3:0.287076943249;JUN:0.278173658757;TLX2:0.269079562198;SOX5:0.210273675658;RBPJ:0.209602057266;FOXP1:0.198071469236;SOX2:0.188468025794;REST:0.184542824295;MEF2{A,B,C,D}:0.175722138697;NKX2-3_NKX2-5:0.172068626;HOX{A5,B5}:0.170954837075;EVI1:0.159823505245;EGR1..3:0.146841892671;TLX1..3_NFIC{dimer}:0.140649558786;HNF4A_NR2F1,2:0.129267415416;FOXM1:0.11777769857;XBP1:0.108618417595;HIC1:0.0973258292768;NKX3-2:0.0869456841115;FOXD3:0.081570090622;TBX4,5:0.0396893963267;NKX2-2,8:0.0323457741179;ZNF384:0.012125794145;BREu{core}:0.0110507918269;MAFB:0.00681292152005;POU3F1..4:-0.00637774734138;GATA6:-0.0152390644996;NR1H4:-0.0162871024058;LEF1_TCF7_TCF7L1,2:-0.0362043779946;HLF:-0.0372303296626;MYFfamily:-0.0400951500198;IKZF2:-0.0510210704655;STAT1,3:-0.0546328493755;GATA4:-0.0602247224917;FOSL2:-0.0633648631657;IKZF1:-0.071817785433;XCPE1{core}:-0.0755919115041;CUX2:-0.0777701905671;TFAP2{A,C}:-0.0815669867938;TGIF1:-0.0863819900476;RFX2..5_RFXANK_RFXAP:-0.0902431360845;HIF1A:-0.0913133021794;SP1:-0.104611762599;RUNX1..3:-0.111955517831;UFEwm:-0.114873336558;NFE2:-0.122922256438;FOX{D1,D2}:-0.12624534991;DMAP1_NCOR{1,2}_SMARC:-0.129312385705;PRDM1:-0.134643313643;ALX4:-0.136501970909;NKX6-1,2:-0.162121100149;RFX1:-0.181509919077;TFAP2B:-0.190722413938;SPI1:-0.204473130483;PDX1:-0.212574670678;BACH2:-0.220467656494;T:-0.221932857612;ZIC1..3:-0.229318868231;FOXP3:-0.229955361901;NHLH1,2:-0.230401078758;ESR1:-0.232849189206;TEAD1:-0.262908803963;SPIB:-0.271912573657;ZFP161:-0.275247170302;FOS_FOS{B,L1}_JUN{B,D}:-0.278579156626;ZBTB6:-0.279961874359;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.281866185739;GTF2I:-0.287120958528;PAX3,7:-0.295523209524;ADNP_IRX_SIX_ZHX:-0.301933621592;HNF1A:-0.311719758374;DBP:-0.311838539781;MED-1{core}:-0.317161819506;AR:-0.321010884587;TP53:-0.325728538151;STAT2,4,6:-0.327886724129;FOX{I1,J2}:-0.331969306547;IRF1,2:-0.352036365193;MAZ:-0.353055692234;ONECUT1,2:-0.376447421464;GFI1B:-0.381915173159;ETS1,2:-0.382525910391;FOXL1:-0.38368763435;NFKB1_REL_RELA:-0.386990618168;MZF1:-0.396349727082;MYBL2:-0.398037654671;IRF7:-0.405526804385;FOXN1:-0.418344728746;NANOG{mouse}:-0.428445089638;PAX5:-0.446545700118;ATF2:-0.448470217325;SMAD1..7,9:-0.45345455308;BPTF:-0.462742763322;EBF1:-0.474768846219;GCM1,2:-0.478719461729;MTE{core}:-0.479565861904;TBP:-0.495296417985;SNAI1..3:-0.495477458687;POU5F1:-0.527937662661;SPZ1:-0.554487501872;PATZ1:-0.554661732926;ZEB1:-0.561571974236;NFATC1..3:-0.567931476729;KLF4:-0.570989050569;RREB1:-0.613529435097;GTF2A1,2:-0.621694737127;PITX1..3:-0.655955353675;ZNF148:-0.663247734936;TFCP2:-0.679075716384;GLI1..3:-0.704086789925;MYOD1:-0.710443625173;NFE2L2:-0.745248219404;HBP1_HMGB_SSRP1_UBTF:-0.749882213924;FOXO1,3,4:-0.770904257065;HSF1,2:-0.775285988346;HOXA9_MEIS1:-0.782631479076;CDX1,2,4:-0.799149086223;LMO2:-0.809535030938;SRF:-0.810233357519;HMGA1,2:-0.917799999498;ZNF238:-0.934825760402;TAL1_TCF{3,4,12}:-0.95231638609;MTF1:-0.966629352667;NKX3-1:-1.08141359011;ATF6:-1.11531480572;EP300:-1.14428365047;ALX1:-1.17595518614;HAND1,2:-1.33857840491;NR6A1:-1.34317387831;TFAP4:-1.35270443458;HMX1:-1.62752475776;RXRA_VDR{dimer}:-2.14932336603 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10514-107E1;search_select_hide=table117:FF:10514-107E1 | |||
}} | }} |
Latest revision as of 14:28, 3 June 2020
Name: | melanoma cell line:COLO 679 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11281 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11281
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11281
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.973 |
10 | 10 | 0.818 |
100 | 100 | 0.679 |
101 | 101 | 0.821 |
102 | 102 | 0.136 |
103 | 103 | 0.731 |
104 | 104 | 0.981 |
105 | 105 | 0.0717 |
106 | 106 | 0.0213 |
107 | 107 | 0.0921 |
108 | 108 | 0.669 |
109 | 109 | 0.93 |
11 | 11 | 0.39 |
110 | 110 | 0.741 |
111 | 111 | 0.0425 |
112 | 112 | 0.58 |
113 | 113 | 0.058 |
114 | 114 | 0.0225 |
115 | 115 | 0.573 |
116 | 116 | 0.218 |
117 | 117 | 0.289 |
118 | 118 | 0.636 |
119 | 119 | 0.075 |
12 | 12 | 0.149 |
120 | 120 | 0.196 |
121 | 121 | 0.62 |
122 | 122 | 0.323 |
123 | 123 | 0.231 |
124 | 124 | 0.571 |
125 | 125 | 0.259 |
126 | 126 | 0.442 |
127 | 127 | 0.224 |
128 | 128 | 0.0199 |
129 | 129 | 0.539 |
13 | 13 | 0.639 |
130 | 130 | 0.591 |
131 | 131 | 0.142 |
132 | 132 | 0.412 |
133 | 133 | 0.123 |
134 | 134 | 0.763 |
135 | 135 | 0.533 |
136 | 136 | 0.0127 |
137 | 137 | 0.325 |
138 | 138 | 0.43 |
139 | 139 | 0.0223 |
14 | 14 | 0.515 |
140 | 140 | 0.0912 |
141 | 141 | 0.854 |
142 | 142 | 0.653 |
143 | 143 | 0.0614 |
144 | 144 | 0.614 |
145 | 145 | 0.655 |
146 | 146 | 0.5 |
147 | 147 | 0.821 |
148 | 148 | 0.879 |
149 | 149 | 0.453 |
15 | 15 | 0.239 |
150 | 150 | 0.311 |
151 | 151 | 0.39 |
152 | 152 | 0.611 |
153 | 153 | 0.592 |
154 | 154 | 0.596 |
155 | 155 | 0.349 |
156 | 156 | 0.524 |
157 | 157 | 0.777 |
158 | 158 | 0.704 |
159 | 159 | 0.0896 |
16 | 16 | 0.94 |
160 | 160 | 0.0458 |
161 | 161 | 0.0378 |
162 | 162 | 0.648 |
163 | 163 | 0.661 |
164 | 164 | 0.728 |
165 | 165 | 0.25 |
166 | 166 | 0.0613 |
167 | 167 | 0.912 |
168 | 168 | 0.445 |
169 | 169 | 0.206 |
17 | 17 | 0.136 |
18 | 18 | 0.57 |
19 | 19 | 0.0843 |
2 | 2 | 0.155 |
20 | 20 | 0.112 |
21 | 21 | 0.297 |
22 | 22 | 0.519 |
23 | 23 | 0.0721 |
24 | 24 | 0.545 |
25 | 25 | 0.764 |
26 | 26 | 0.936 |
27 | 27 | 0.193 |
28 | 28 | 0.649 |
29 | 29 | 0.683 |
3 | 3 | 0.478 |
30 | 30 | 0.21 |
31 | 31 | 0.51 |
32 | 32 | 1.38527e-4 |
33 | 33 | 0.976 |
34 | 34 | 0.219 |
35 | 35 | 0.957 |
36 | 36 | 0.558 |
37 | 37 | 0.939 |
38 | 38 | 0.569 |
39 | 39 | 0.38 |
4 | 4 | 0.688 |
40 | 40 | 0.0664 |
41 | 41 | 0.926 |
42 | 42 | 0.537 |
43 | 43 | 0.127 |
44 | 44 | 0.305 |
45 | 45 | 0.219 |
46 | 46 | 0.297 |
47 | 47 | 0.738 |
48 | 48 | 0.604 |
49 | 49 | 0.256 |
5 | 5 | 0.824 |
50 | 50 | 0.714 |
51 | 51 | 0.125 |
52 | 52 | 0.116 |
53 | 53 | 0.369 |
54 | 54 | 0.38 |
55 | 55 | 0.719 |
56 | 56 | 0.701 |
57 | 57 | 0.932 |
58 | 58 | 0.226 |
59 | 59 | 0.279 |
6 | 6 | 0.0487 |
60 | 60 | 0.167 |
61 | 61 | 0.709 |
62 | 62 | 0.0972 |
63 | 63 | 0.152 |
64 | 64 | 0.531 |
65 | 65 | 0.213 |
66 | 66 | 0.0641 |
67 | 67 | 0.576 |
68 | 68 | 0.00331 |
69 | 69 | 0.329 |
7 | 7 | 0.668 |
70 | 70 | 0.438 |
71 | 71 | 0.524 |
72 | 72 | 0.32 |
73 | 73 | 0.784 |
74 | 74 | 0.446 |
75 | 75 | 0.25 |
76 | 76 | 0.499 |
77 | 77 | 0.0293 |
78 | 78 | 0.246 |
79 | 79 | 0.0436 |
8 | 8 | 0.234 |
80 | 80 | 0.689 |
81 | 81 | 0.163 |
82 | 82 | 0.0256 |
83 | 83 | 0.0679 |
84 | 84 | 0.776 |
85 | 85 | 0.508 |
86 | 86 | 0.513 |
87 | 87 | 0.0756 |
88 | 88 | 0.408 |
89 | 89 | 0.122 |
9 | 9 | 0.281 |
90 | 90 | 0.806 |
91 | 91 | 0.0452 |
92 | 92 | 0.108 |
93 | 93 | 0.745 |
94 | 94 | 0.066 |
95 | 95 | 0.295 |
96 | 96 | 0.263 |
97 | 97 | 0.743 |
98 | 98 | 0.221 |
99 | 99 | 0.581 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11281
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100849 melanoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1909 (melanoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100849 (melanoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)