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{{f5samples
{{f5samples
|id=FF:10534-107G3
|DRA_sample_Accession=CAGE@SAMD00005931
|name=acute lymphoblastic leukemia (B-ALL) cell line:NALM-6
|accession_numbers=CAGE;DRX007798;DRR008670;DRZ000095;DRZ001480;DRZ011445;DRZ012830
|sample_id=10534
|ancestors_in_anatomy_facet=
|rna_tube_id=107G3
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000236,CL:0000817
|rna_box=107
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240
|rna_position=G3
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100737,FF:0102144,FF:0101035,FF:0100741,FF:0100773,FF:0100739,FF:0100603,FF:0103288
|sample_cell_lot=
|comment=
|sample_cell_catalog=RCB1933
|created_by=
|sample_company=RIKEN Bioresource centre
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
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|rna_od260/280=2.07
|sample_cell_type=b cell
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|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=acute lymphoblastic leukemia (B-ALL)
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=82.0218
|rna_concentration=2.34348
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|ancestors_in_disease_facet=DOID:0050686,DOID:0060083,DOID:1240,DOID:14566,DOID:162,DOID:2531,DOID:4
|sample_description=
|fonse_cell_line=FF:0101035
|fonse_cell_line=FF:0101035
|fonse_cell_line_closure=FF:0101035
|fonse_cell_line_closure=FF:0101035
Line 66: Line 40:
|fonse_treatment=
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|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520lymphoblastic%2520leukemia%2520%2528B-ALL%2529%2520cell%2520line%253aNALM-6.CNhs11282.10534-107G3.hg38.nobarcode.bam
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|id=FF:10534-107G3
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|is_obsolete=
|library_id=CNhs11282
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|microRNAs=
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10534
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10534
|name=acute lymphoblastic leukemia (B-ALL) cell line:NALM-6
|namespace=FANTOM5
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|rna_box=107
|rna_catalog_number=
|rna_concentration=2.34348
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.11
|rna_od260/280=2.07
|rna_position=G3
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=107G3
|rna_weight_ug=82.0218
|sample_age=
|sample_category=cell lines
|sample_cell_catalog=RCB1933
|sample_cell_line=NALM-6
|sample_cell_lot=
|sample_cell_type=b cell
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=acute lymphoblastic leukemia (B-ALL)
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.18066701191055e-278!GO:0043227;membrane-bound organelle;1.63086975650185e-246!GO:0043231;intracellular membrane-bound organelle;3.07504500071075e-246!GO:0043226;organelle;2.47063379616637e-236!GO:0043229;intracellular organelle;6.60423817441967e-236!GO:0044422;organelle part;9.27252421880698e-179!GO:0044446;intracellular organelle part;5.99079243139567e-177!GO:0005737;cytoplasm;4.17790358936054e-154!GO:0005634;nucleus;7.07754072405437e-141!GO:0032991;macromolecular complex;7.90968828657084e-141!GO:0044237;cellular metabolic process;3.06252263975023e-126!GO:0044238;primary metabolic process;1.08242816079881e-122!GO:0044428;nuclear part;1.3214566004754e-120!GO:0043170;macromolecule metabolic process;7.85140880364973e-117!GO:0030529;ribonucleoprotein complex;5.4461623208545e-113!GO:0044444;cytoplasmic part;2.6075171554426e-108!GO:0043233;organelle lumen;1.82870101217341e-106!GO:0031974;membrane-enclosed lumen;1.82870101217341e-106!GO:0003723;RNA binding;4.03218134832067e-104!GO:0005739;mitochondrion;1.33489190723027e-80!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.06810700077916e-79!GO:0043283;biopolymer metabolic process;3.91212472541936e-79!GO:0006396;RNA processing;2.45150823531577e-78!GO:0031981;nuclear lumen;6.32834201018616e-74!GO:0043234;protein complex;1.62632996657523e-72!GO:0010467;gene expression;1.80739798090969e-70!GO:0006259;DNA metabolic process;5.45287982163837e-66!GO:0006412;translation;7.13269615093783e-62!GO:0016071;mRNA metabolic process;1.7617484963821e-60!GO:0005840;ribosome;2.96020963614325e-60!GO:0005515;protein binding;1.54182969156954e-59!GO:0044429;mitochondrial part;4.13463154134377e-56!GO:0003676;nucleic acid binding;2.89826039858183e-54!GO:0008380;RNA splicing;4.00940501287906e-52!GO:0006397;mRNA processing;6.1346774275646e-52!GO:0003735;structural constituent of ribosome;2.3163445577551e-51!GO:0019538;protein metabolic process;2.45210173467359e-49!GO:0031967;organelle envelope;6.2796764906347e-49!GO:0031975;envelope;1.5305918774107e-48!GO:0044249;cellular biosynthetic process;7.68905535658456e-47!GO:0005654;nucleoplasm;1.19788005535258e-46!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.83171851180034e-46!GO:0044267;cellular protein metabolic process;5.28206181710043e-45!GO:0033279;ribosomal subunit;1.02939786794717e-44!GO:0044260;cellular macromolecule metabolic process;2.70368276520945e-44!GO:0006996;organelle organization and biogenesis;1.6353758128165e-43!GO:0009059;macromolecule biosynthetic process;4.10009936848485e-43!GO:0009058;biosynthetic process;6.82900500526289e-43!GO:0016043;cellular component organization and biogenesis;1.19628372618975e-42!GO:0043228;non-membrane-bound organelle;2.29361254853515e-42!GO:0043232;intracellular non-membrane-bound organelle;2.29361254853515e-42!GO:0007049;cell cycle;4.76474749070404e-42!GO:0031090;organelle membrane;9.70505467803306e-42!GO:0006974;response to DNA damage stimulus;2.87539174633504e-41!GO:0033036;macromolecule localization;4.82480470082896e-39!GO:0005681;spliceosome;1.70020299163384e-38!GO:0015031;protein transport;7.11824858932663e-38!GO:0065003;macromolecular complex assembly;8.55467591443437e-38!GO:0006281;DNA repair;1.95811484661706e-37!GO:0016070;RNA metabolic process;2.03611856887284e-37!GO:0005694;chromosome;3.85172092299517e-37!GO:0000166;nucleotide binding;4.41075309111446e-37!GO:0044451;nucleoplasm part;6.13769924299105e-37!GO:0005829;cytosol;7.54694131567119e-35!GO:0045184;establishment of protein localization;1.79143368638144e-34!GO:0008104;protein localization;4.39735186712725e-34!GO:0000278;mitotic cell cycle;8.11518538187961e-34!GO:0022607;cellular component assembly;1.0572457768903e-33!GO:0005740;mitochondrial envelope;1.62376490348076e-33!GO:0022402;cell cycle process;2.29573166138234e-33!GO:0046907;intracellular transport;3.64264335111505e-33!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.64475367114994e-32!GO:0019866;organelle inner membrane;1.38651892548591e-31!GO:0031966;mitochondrial membrane;3.57275657476474e-31!GO:0044427;chromosomal part;3.05398659422067e-30!GO:0022403;cell cycle phase;4.2910217557165e-30!GO:0006886;intracellular protein transport;4.49686073574664e-29!GO:0000087;M phase of mitotic cell cycle;5.21684750673562e-29!GO:0005743;mitochondrial inner membrane;5.58049550259196e-29!GO:0044445;cytosolic part;6.24577251920227e-29!GO:0051276;chromosome organization and biogenesis;6.66781982469255e-29!GO:0009719;response to endogenous stimulus;1.28531008744129e-28!GO:0007067;mitosis;2.46047926362553e-28!GO:0005730;nucleolus;4.01547980444073e-28!GO:0006260;DNA replication;2.17757666007698e-27!GO:0005524;ATP binding;2.51239462691379e-27!GO:0032553;ribonucleotide binding;6.38461258669608e-27!GO:0032555;purine ribonucleotide binding;6.38461258669608e-27!GO:0031980;mitochondrial lumen;6.78444152020494e-27!GO:0005759;mitochondrial matrix;6.78444152020494e-27!GO:0032559;adenyl ribonucleotide binding;1.14395818386251e-26!GO:0000279;M phase;3.14243293750798e-26!GO:0016462;pyrophosphatase activity;3.5717858928357e-26!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.69963443604476e-26!GO:0016817;hydrolase activity, acting on acid anhydrides;4.4057380925677e-26!GO:0017076;purine nucleotide binding;1.07895876514508e-25!GO:0017111;nucleoside-triphosphatase activity;1.3632196123648e-25!GO:0051301;cell division;2.20491763640914e-25!GO:0030554;adenyl nucleotide binding;4.93804273149288e-25!GO:0022618;protein-RNA complex assembly;1.08894625588226e-24!GO:0015935;small ribosomal subunit;1.18497273733915e-23!GO:0006119;oxidative phosphorylation;3.40030918872619e-23!GO:0016874;ligase activity;4.94048003393902e-23!GO:0044455;mitochondrial membrane part;9.29578763101026e-23!GO:0051649;establishment of cellular localization;1.09085639132214e-22!GO:0016887;ATPase activity;1.58983523930864e-22!GO:0006512;ubiquitin cycle;2.11862883634645e-22!GO:0042623;ATPase activity, coupled;2.46215349603331e-22!GO:0015934;large ribosomal subunit;3.34688195640525e-22!GO:0051641;cellular localization;4.83972963930876e-22!GO:0042254;ribosome biogenesis and assembly;7.34602431030894e-22!GO:0044265;cellular macromolecule catabolic process;1.18016336173436e-21!GO:0006325;establishment and/or maintenance of chromatin architecture;1.12603251923056e-20!GO:0006323;DNA packaging;5.58000862528492e-20!GO:0008135;translation factor activity, nucleic acid binding;1.78587173274921e-19!GO:0004386;helicase activity;2.54089036044749e-19!GO:0016604;nuclear body;3.87721748460434e-19!GO:0051603;proteolysis involved in cellular protein catabolic process;7.09167511428538e-19!GO:0019941;modification-dependent protein catabolic process;7.54895748948014e-19!GO:0043632;modification-dependent macromolecule catabolic process;7.54895748948014e-19!GO:0006511;ubiquitin-dependent protein catabolic process;8.60578414962414e-19!GO:0043285;biopolymer catabolic process;8.97872611951064e-19!GO:0006457;protein folding;1.19045600429036e-18!GO:0000398;nuclear mRNA splicing, via spliceosome;1.49625043983843e-18!GO:0000375;RNA splicing, via transesterification reactions;1.49625043983843e-18!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.49625043983843e-18!GO:0044257;cellular protein catabolic process;1.7897499115419e-18!GO:0005746;mitochondrial respiratory chain;3.29259713004348e-18!GO:0000502;proteasome complex (sensu Eukaryota);1.22511982897868e-17!GO:0009057;macromolecule catabolic process;1.29913425320352e-17!GO:0044453;nuclear membrane part;2.14954216329794e-17!GO:0008134;transcription factor binding;2.17607317558622e-17!GO:0031965;nuclear membrane;3.07176447586302e-17!GO:0005761;mitochondrial ribosome;3.42572952474174e-17!GO:0000313;organellar ribosome;3.42572952474174e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.51779668862245e-17!GO:0016568;chromatin modification;5.65943199085672e-17!GO:0008026;ATP-dependent helicase activity;6.16689855488486e-17!GO:0043412;biopolymer modification;1.96694753613358e-16!GO:0006399;tRNA metabolic process;2.47409139135805e-16!GO:0005635;nuclear envelope;3.13675413148721e-16!GO:0044248;cellular catabolic process;3.40774028643683e-16!GO:0006605;protein targeting;5.73812244233158e-16!GO:0006413;translational initiation;6.50159443859525e-16!GO:0050136;NADH dehydrogenase (quinone) activity;8.55905015579998e-16!GO:0003954;NADH dehydrogenase activity;8.55905015579998e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.55905015579998e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.07557545640248e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.13891326543554e-15!GO:0050657;nucleic acid transport;1.21147159797248e-15!GO:0051236;establishment of RNA localization;1.21147159797248e-15!GO:0050658;RNA transport;1.21147159797248e-15!GO:0006403;RNA localization;1.422914448979e-15!GO:0005643;nuclear pore;2.17613449476207e-15!GO:0003743;translation initiation factor activity;2.94766555985917e-15!GO:0006364;rRNA processing;3.12463115502107e-15!GO:0016072;rRNA metabolic process;6.68102211363969e-15!GO:0012505;endomembrane system;8.10248148533698e-15!GO:0016607;nuclear speck;1.24128301739815e-14!GO:0006261;DNA-dependent DNA replication;1.42734419182277e-14!GO:0051726;regulation of cell cycle;1.89164963439318e-14!GO:0042775;organelle ATP synthesis coupled electron transport;2.37659389500841e-14!GO:0042773;ATP synthesis coupled electron transport;2.37659389500841e-14!GO:0000074;regulation of progression through cell cycle;2.73320806494041e-14!GO:0006446;regulation of translational initiation;5.04651897856254e-14!GO:0030163;protein catabolic process;7.22715417406827e-14!GO:0030964;NADH dehydrogenase complex (quinone);7.48578729949438e-14!GO:0045271;respiratory chain complex I;7.48578729949438e-14!GO:0005747;mitochondrial respiratory chain complex I;7.48578729949438e-14!GO:0051082;unfolded protein binding;1.67286055461784e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.72721703884918e-13!GO:0016779;nucleotidyltransferase activity;2.02427356739899e-13!GO:0051028;mRNA transport;3.28764634479382e-13!GO:0043687;post-translational protein modification;4.12784975367864e-13!GO:0000785;chromatin;4.40555483925357e-13!GO:0046930;pore complex;4.52061022302111e-13!GO:0006464;protein modification process;4.59906800156703e-13!GO:0065002;intracellular protein transport across a membrane;5.81161377018128e-13!GO:0051186;cofactor metabolic process;6.30858527116345e-13!GO:0000775;chromosome, pericentric region;6.60101271105029e-13!GO:0009259;ribonucleotide metabolic process;7.29339433746663e-13!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.43777465197789e-13!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.56808778092036e-12!GO:0006163;purine nucleotide metabolic process;1.79022139738851e-12!GO:0065004;protein-DNA complex assembly;5.29635575961268e-12!GO:0006913;nucleocytoplasmic transport;5.33299688664099e-12!GO:0006333;chromatin assembly or disassembly;5.33299688664099e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;9.76531727014205e-12!GO:0051169;nuclear transport;1.2184670937118e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.84853456798307e-11!GO:0006164;purine nucleotide biosynthetic process;2.0078517813382e-11!GO:0006310;DNA recombination;2.33163321000396e-11!GO:0043566;structure-specific DNA binding;2.86045188651965e-11!GO:0048770;pigment granule;2.87320180162432e-11!GO:0042470;melanosome;2.87320180162432e-11!GO:0009260;ribonucleotide biosynthetic process;3.01051712775025e-11!GO:0009150;purine ribonucleotide metabolic process;3.24116424290098e-11!GO:0003712;transcription cofactor activity;5.24746299696369e-11!GO:0008639;small protein conjugating enzyme activity;6.91173376117067e-11!GO:0030532;small nuclear ribonucleoprotein complex;6.91173376117067e-11!GO:0003697;single-stranded DNA binding;6.94543232111636e-11!GO:0044432;endoplasmic reticulum part;7.24578303023154e-11!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;8.27816375989656e-11!GO:0004812;aminoacyl-tRNA ligase activity;8.27816375989656e-11!GO:0016875;ligase activity, forming carbon-oxygen bonds;8.27816375989656e-11!GO:0016740;transferase activity;8.7488351581977e-11!GO:0043038;amino acid activation;1.52516368592042e-10!GO:0006418;tRNA aminoacylation for protein translation;1.52516368592042e-10!GO:0043039;tRNA aminoacylation;1.52516368592042e-10!GO:0006732;coenzyme metabolic process;1.86246953817033e-10!GO:0004842;ubiquitin-protein ligase activity;1.91745750558198e-10!GO:0008565;protein transporter activity;2.20882452898305e-10!GO:0005819;spindle;2.25732002998009e-10!GO:0009152;purine ribonucleotide biosynthetic process;3.53728386939999e-10!GO:0019787;small conjugating protein ligase activity;3.56000975605636e-10!GO:0000075;cell cycle checkpoint;3.57429593471115e-10!GO:0019222;regulation of metabolic process;4.09517513329167e-10!GO:0005657;replication fork;4.48260440186388e-10!GO:0005783;endoplasmic reticulum;5.75744653174425e-10!GO:0005667;transcription factor complex;5.83201187862482e-10!GO:0009055;electron carrier activity;5.90842375952582e-10!GO:0051329;interphase of mitotic cell cycle;1.67810101546184e-09!GO:0048193;Golgi vesicle transport;1.70557529438984e-09!GO:0008094;DNA-dependent ATPase activity;1.73459435018347e-09!GO:0051325;interphase;1.73459435018347e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.7449855650227e-09!GO:0009141;nucleoside triphosphate metabolic process;2.11985056058962e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.13808387217402e-09!GO:0003899;DNA-directed RNA polymerase activity;2.13808387217402e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.68971236610533e-09!GO:0016787;hydrolase activity;2.83471422330592e-09!GO:0017038;protein import;4.08288424130625e-09!GO:0015630;microtubule cytoskeleton;4.84291539295332e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.66941893204795e-09!GO:0009144;purine nucleoside triphosphate metabolic process;5.66941893204795e-09!GO:0005789;endoplasmic reticulum membrane;6.08059228661525e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.84236875526368e-09!GO:0006461;protein complex assembly;7.1355857822262e-09!GO:0016881;acid-amino acid ligase activity;7.44676046807945e-09!GO:0050794;regulation of cellular process;7.61439666535039e-09!GO:0019829;cation-transporting ATPase activity;1.02078584952398e-08!GO:0012501;programmed cell death;1.04959646938882e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.14643142601288e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.14643142601288e-08!GO:0006302;double-strand break repair;1.18860627737382e-08!GO:0006366;transcription from RNA polymerase II promoter;1.20117887672733e-08!GO:0005813;centrosome;1.23838633970855e-08!GO:0006915;apoptosis;1.35181975494897e-08!GO:0009056;catabolic process;1.54730916439168e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.65315680678548e-08!GO:0007051;spindle organization and biogenesis;1.65455448970997e-08!GO:0005815;microtubule organizing center;1.71006054357005e-08!GO:0000245;spliceosome assembly;2.70522229916925e-08!GO:0007005;mitochondrion organization and biogenesis;2.9427213986638e-08!GO:0051246;regulation of protein metabolic process;2.94590476814704e-08!GO:0015986;ATP synthesis coupled proton transport;3.02888406206767e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.02888406206767e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.06101418603948e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.06101418603948e-08!GO:0006793;phosphorus metabolic process;3.59456404395445e-08!GO:0006796;phosphate metabolic process;3.59456404395445e-08!GO:0016741;transferase activity, transferring one-carbon groups;3.70780788520078e-08!GO:0005839;proteasome core complex (sensu Eukaryota);3.79317230582033e-08!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.98838353819461e-08!GO:0009060;aerobic respiration;4.02515022275783e-08!GO:0046034;ATP metabolic process;4.30479962666985e-08!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.4785735483695e-08!GO:0031323;regulation of cellular metabolic process;5.59685904793061e-08!GO:0007059;chromosome segregation;5.94006470872779e-08!GO:0016363;nuclear matrix;7.11811077142027e-08!GO:0008168;methyltransferase activity;7.19080756226843e-08!GO:0045333;cellular respiration;7.19080756226843e-08!GO:0051188;cofactor biosynthetic process;7.47418896578641e-08!GO:0015078;hydrogen ion transmembrane transporter activity;8.02291739675102e-08!GO:0016310;phosphorylation;8.25206109411401e-08!GO:0004518;nuclease activity;1.09188862719188e-07!GO:0032446;protein modification by small protein conjugation;1.40831597720646e-07!GO:0003724;RNA helicase activity;1.43528140686798e-07!GO:0004298;threonine endopeptidase activity;1.4396201375885e-07!GO:0003682;chromatin binding;1.63588404732848e-07!GO:0006754;ATP biosynthetic process;2.06421701497294e-07!GO:0006753;nucleoside phosphate metabolic process;2.06421701497294e-07!GO:0009117;nucleotide metabolic process;2.2882908192318e-07!GO:0008219;cell death;2.69250168568148e-07!GO:0016265;death;2.69250168568148e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.88719451596024e-07!GO:0044452;nucleolar part;3.04779315206013e-07!GO:0006752;group transfer coenzyme metabolic process;3.73164267067707e-07!GO:0016567;protein ubiquitination;3.78728321567435e-07!GO:0031497;chromatin assembly;3.91099796936225e-07!GO:0008033;tRNA processing;4.26663113405826e-07!GO:0006350;transcription;5.7265507792669e-07!GO:0003713;transcription coactivator activity;5.94471892816252e-07!GO:0051052;regulation of DNA metabolic process;6.14868612625155e-07!GO:0016192;vesicle-mediated transport;6.68967807667398e-07!GO:0007088;regulation of mitosis;6.97092781203831e-07!GO:0051168;nuclear export;7.01829862089331e-07!GO:0045259;proton-transporting ATP synthase complex;7.27313906395254e-07!GO:0003678;DNA helicase activity;7.74199714080238e-07!GO:0000151;ubiquitin ligase complex;8.01030122716444e-07!GO:0006334;nucleosome assembly;8.01034229757992e-07!GO:0000776;kinetochore;8.38730682695169e-07!GO:0003690;double-stranded DNA binding;9.190270894144e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.09991184183358e-06!GO:0006401;RNA catabolic process;1.13646756053411e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.16691782272314e-06!GO:0003684;damaged DNA binding;1.73148681848937e-06!GO:0006402;mRNA catabolic process;1.83871218189271e-06!GO:0009108;coenzyme biosynthetic process;2.03199294517004e-06!GO:0006084;acetyl-CoA metabolic process;2.31713666637854e-06!GO:0005793;ER-Golgi intermediate compartment;2.84952785706644e-06!GO:0006099;tricarboxylic acid cycle;2.96452924533725e-06!GO:0046356;acetyl-CoA catabolic process;2.96452924533725e-06!GO:0006613;cotranslational protein targeting to membrane;3.72726352259149e-06!GO:0006352;transcription initiation;4.39854718418225e-06!GO:0016563;transcription activator activity;4.87489062838416e-06!GO:0048475;coated membrane;5.03760402262633e-06!GO:0030117;membrane coat;5.03760402262633e-06!GO:0003677;DNA binding;5.65552383043894e-06!GO:0004527;exonuclease activity;6.08301270545257e-06!GO:0030880;RNA polymerase complex;6.13669081809575e-06!GO:0030120;vesicle coat;7.5089924966601e-06!GO:0030662;coated vesicle membrane;7.5089924966601e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;9.30065608794512e-06!GO:0015399;primary active transmembrane transporter activity;9.30065608794512e-06!GO:0006612;protein targeting to membrane;9.46202953986321e-06!GO:0010468;regulation of gene expression;1.02745187036452e-05!GO:0003729;mRNA binding;1.0302620024086e-05!GO:0016251;general RNA polymerase II transcription factor activity;1.08177715844434e-05!GO:0005762;mitochondrial large ribosomal subunit;1.08381880116266e-05!GO:0000315;organellar large ribosomal subunit;1.08381880116266e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.25528392516605e-05!GO:0008186;RNA-dependent ATPase activity;1.31658893981696e-05!GO:0006383;transcription from RNA polymerase III promoter;1.36944454142237e-05!GO:0006606;protein import into nucleus;1.37158923596008e-05!GO:0007093;mitotic cell cycle checkpoint;1.38794746797407e-05!GO:0051170;nuclear import;1.39005024000339e-05!GO:0032508;DNA duplex unwinding;1.55599223583525e-05!GO:0032392;DNA geometric change;1.55599223583525e-05!GO:0000228;nuclear chromosome;1.6080492760331e-05!GO:0000314;organellar small ribosomal subunit;1.62658507386174e-05!GO:0005763;mitochondrial small ribosomal subunit;1.62658507386174e-05!GO:0055029;nuclear DNA-directed RNA polymerase complex;1.66483365090215e-05!GO:0000428;DNA-directed RNA polymerase complex;1.66483365090215e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.6806957492984e-05!GO:0043623;cellular protein complex assembly;1.79419149242839e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;1.89965195144641e-05!GO:0009165;nucleotide biosynthetic process;2.23514670261218e-05!GO:0009109;coenzyme catabolic process;2.23514670261218e-05!GO:0031324;negative regulation of cellular metabolic process;2.59812773559309e-05!GO:0051427;hormone receptor binding;2.61400634508645e-05!GO:0050789;regulation of biological process;3.00515124808418e-05!GO:0016564;transcription repressor activity;3.28664922726732e-05!GO:0043021;ribonucleoprotein binding;4.00447138143954e-05!GO:0004004;ATP-dependent RNA helicase activity;4.14455129678231e-05!GO:0043681;protein import into mitochondrion;4.255108078488e-05!GO:0006091;generation of precursor metabolites and energy;4.43172014464013e-05!GO:0005794;Golgi apparatus;4.49043634645232e-05!GO:0042981;regulation of apoptosis;4.79077539596689e-05!GO:0016853;isomerase activity;4.81714808181439e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.92728212948108e-05!GO:0006268;DNA unwinding during replication;4.98657624112092e-05!GO:0035257;nuclear hormone receptor binding;5.5825637568507e-05!GO:0000819;sister chromatid segregation;5.86609678778516e-05!GO:0043067;regulation of programmed cell death;6.01081746298109e-05!GO:0000070;mitotic sister chromatid segregation;6.01172097521175e-05!GO:0006405;RNA export from nucleus;6.73012555963277e-05!GO:0045786;negative regulation of progression through cell cycle;8.62857260413847e-05!GO:0007052;mitotic spindle organization and biogenesis;8.83767126211222e-05!GO:0032200;telomere organization and biogenesis;9.21285912005064e-05!GO:0000723;telomere maintenance;9.21285912005064e-05!GO:0043492;ATPase activity, coupled to movement of substances;9.30568143294901e-05!GO:0051187;cofactor catabolic process;9.4769733539459e-05!GO:0031570;DNA integrity checkpoint;0.000102644582266448!GO:0032774;RNA biosynthetic process;0.000110114281652779!GO:0006414;translational elongation;0.000110617972966127!GO:0006839;mitochondrial transport;0.000113687148746193!GO:0000049;tRNA binding;0.000125171202189161!GO:0000922;spindle pole;0.0001372939370423!GO:0006626;protein targeting to mitochondrion;0.000139194189266768!GO:0009892;negative regulation of metabolic process;0.000140661918150422!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000149031473110812!GO:0006351;transcription, DNA-dependent;0.000149423785254284!GO:0009451;RNA modification;0.000158806152272306!GO:0005798;Golgi-associated vesicle;0.000166428355819327!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000170969787129872!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000184632922947944!GO:0006270;DNA replication initiation;0.00018549796240133!GO:0048523;negative regulation of cellular process;0.000192380689273904!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000194815481159916!GO:0043596;nuclear replication fork;0.000198603678745901!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000210814937442219!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000211178335757057!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00022357035052006!GO:0004674;protein serine/threonine kinase activity;0.00022801369258419!GO:0016859;cis-trans isomerase activity;0.000243010632284209!GO:0000059;protein import into nucleus, docking;0.000251680903505358!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000254413094666392!GO:0005684;U2-dependent spliceosome;0.000259248543970618!GO:0006367;transcription initiation from RNA polymerase II promoter;0.000273813427413343!GO:0006275;regulation of DNA replication;0.000273813427413343!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.000273816832927759!GO:0005770;late endosome;0.000274484327087909!GO:0007006;mitochondrial membrane organization and biogenesis;0.000294526884540559!GO:0006284;base-excision repair;0.000297686634325444!GO:0016491;oxidoreductase activity;0.000330549534874377!GO:0004003;ATP-dependent DNA helicase activity;0.000331939686021107!GO:0051252;regulation of RNA metabolic process;0.00033856432575265!GO:0045454;cell redox homeostasis;0.00035722561915213!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000380344980447198!GO:0006338;chromatin remodeling;0.000380344980447198!GO:0008276;protein methyltransferase activity;0.00039577509356963!GO:0000725;recombinational repair;0.000409402014100163!GO:0000724;double-strand break repair via homologous recombination;0.000409402014100163!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000422625088346125!GO:0065009;regulation of a molecular function;0.000429539942899854!GO:0031072;heat shock protein binding;0.000448596382493004!GO:0019752;carboxylic acid metabolic process;0.000460031837349509!GO:0003714;transcription corepressor activity;0.000464575435084655!GO:0015992;proton transport;0.000464575435084655!GO:0000793;condensed chromosome;0.000468414499513099!GO:0006818;hydrogen transport;0.00047387741898813!GO:0006082;organic acid metabolic process;0.000480871530999324!GO:0000082;G1/S transition of mitotic cell cycle;0.000494466129741484!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000497113811011901!GO:0003887;DNA-directed DNA polymerase activity;0.000514420607861437!GO:0005885;Arp2/3 protein complex;0.00055200964446201!GO:0000077;DNA damage checkpoint;0.000563577790806998!GO:0000781;chromosome, telomeric region;0.000569652922293799!GO:0006950;response to stress;0.000580247687186273!GO:0015631;tubulin binding;0.000604732817971859!GO:0000287;magnesium ion binding;0.000633038271200114!GO:0031124;mRNA 3'-end processing;0.000639020345120979!GO:0006289;nucleotide-excision repair;0.000639683329886803!GO:0019899;enzyme binding;0.000644958290957077!GO:0045449;regulation of transcription;0.000676954445700596!GO:0006520;amino acid metabolic process;0.000724284736817254!GO:0031968;organelle outer membrane;0.000795395036645252!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00079733271503444!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00079733271503444!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00079733271503444!GO:0016272;prefoldin complex;0.000798036772164894!GO:0019867;outer membrane;0.000830273849873276!GO:0009112;nucleobase metabolic process;0.000876691356108987!GO:0043601;nuclear replisome;0.000884660427803145!GO:0030894;replisome;0.000884660427803145!GO:0019843;rRNA binding;0.000907346149482453!GO:0048500;signal recognition particle;0.000954415838329781!GO:0005669;transcription factor TFIID complex;0.000987206518632254!GO:0006417;regulation of translation;0.00104954452294812!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00105844396567674!GO:0003711;transcription elongation regulator activity;0.00106911295271381!GO:0000910;cytokinesis;0.00109364944790797!GO:0008312;7S RNA binding;0.00109868450211998!GO:0015980;energy derivation by oxidation of organic compounds;0.00110049858172394!GO:0006144;purine base metabolic process;0.00117190684672711!GO:0005637;nuclear inner membrane;0.0011747884289778!GO:0016481;negative regulation of transcription;0.00117699263360458!GO:0042770;DNA damage response, signal transduction;0.00118544881875424!GO:0005876;spindle microtubule;0.00119034943998323!GO:0005768;endosome;0.00120013326568824!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00126727276364351!GO:0008654;phospholipid biosynthetic process;0.00127823899449204!GO:0006611;protein export from nucleus;0.00134118099484876!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00137459649351529!GO:0009124;nucleoside monophosphate biosynthetic process;0.00143549393911752!GO:0009123;nucleoside monophosphate metabolic process;0.00143549393911752!GO:0031123;RNA 3'-end processing;0.00144357298285619!GO:0051053;negative regulation of DNA metabolic process;0.00147289426559891!GO:0005048;signal sequence binding;0.00156239949989283!GO:0000726;non-recombinational repair;0.00157002010892833!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00159077343133666!GO:0008408;3'-5' exonuclease activity;0.00164200653503282!GO:0046483;heterocycle metabolic process;0.00165389269014625!GO:0007017;microtubule-based process;0.00165389269014625!GO:0030384;phosphoinositide metabolic process;0.0016757161260768!GO:0000786;nucleosome;0.00167948876294479!GO:0005741;mitochondrial outer membrane;0.00168414727595593!GO:0043069;negative regulation of programmed cell death;0.00171769867241185!GO:0042393;histone binding;0.00174302952557232!GO:0006400;tRNA modification;0.00176265654946746!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00176265654946746!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00176265654946746!GO:0046966;thyroid hormone receptor binding;0.00177773349608607!GO:0046489;phosphoinositide biosynthetic process;0.0017848793056697!GO:0048519;negative regulation of biological process;0.00180667696130577!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00186257651705895!GO:0000118;histone deacetylase complex;0.00189343069211683!GO:0022890;inorganic cation transmembrane transporter activity;0.00191024588100671!GO:0000178;exosome (RNase complex);0.00194631912002495!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00207398072461663!GO:0045047;protein targeting to ER;0.00207398072461663!GO:0043066;negative regulation of apoptosis;0.00208616288663481!GO:0044450;microtubule organizing center part;0.00230547498562137!GO:0005758;mitochondrial intermembrane space;0.00237976133356584!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00241419344173789!GO:0043488;regulation of mRNA stability;0.00248791991126011!GO:0043487;regulation of RNA stability;0.00248791991126011!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0024912097892074!GO:0051540;metal cluster binding;0.00255578350504226!GO:0051536;iron-sulfur cluster binding;0.00255578350504226!GO:0047485;protein N-terminus binding;0.00255944683460292!GO:0051539;4 iron, 4 sulfur cluster binding;0.00267282239704786!GO:0051920;peroxiredoxin activity;0.00273669510127456!GO:0004532;exoribonuclease activity;0.0027581063805185!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0027581063805185!GO:0030521;androgen receptor signaling pathway;0.00284167489832447!GO:0031326;regulation of cellular biosynthetic process;0.00289087288679078!GO:0032259;methylation;0.00301959348052474!GO:0031577;spindle checkpoint;0.00301959348052474!GO:0006650;glycerophospholipid metabolic process;0.0030863749566546!GO:0004722;protein serine/threonine phosphatase activity;0.00309403628595518!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00309403628595518!GO:0015002;heme-copper terminal oxidase activity;0.00309403628595518!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00309403628595518!GO:0004129;cytochrome-c oxidase activity;0.00309403628595518!GO:0008022;protein C-terminus binding;0.00316069942473611!GO:0000339;RNA cap binding;0.00324611374648842!GO:0003746;translation elongation factor activity;0.00330403769777379!GO:0008632;apoptotic program;0.00331980575614616!GO:0006891;intra-Golgi vesicle-mediated transport;0.00331980575614616!GO:0003924;GTPase activity;0.0036295903453444!GO:0051320;S phase;0.00364405089424294!GO:0009161;ribonucleoside monophosphate metabolic process;0.00364405089424294!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.00364405089424294!GO:0043414;biopolymer methylation;0.0039497220887478!GO:0030663;COPI coated vesicle membrane;0.0039497220887478!GO:0030126;COPI vesicle coat;0.0039497220887478!GO:0033116;ER-Golgi intermediate compartment membrane;0.00395605715312093!GO:0000152;nuclear ubiquitin ligase complex;0.00399276587321053!GO:0042054;histone methyltransferase activity;0.00412079297492976!GO:0005663;DNA replication factor C complex;0.00424468141551421!GO:0006916;anti-apoptosis;0.00426076641515349!GO:0006595;polyamine metabolic process;0.00426252780441682!GO:0008139;nuclear localization sequence binding;0.00426376033959202!GO:0046474;glycerophospholipid biosynthetic process;0.00427118148774021!GO:0005525;GTP binding;0.0045494921524187!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00455002341436097!GO:0007004;telomere maintenance via telomerase;0.00455349865396918!GO:0003725;double-stranded RNA binding;0.0046226175129781!GO:0019783;small conjugating protein-specific protease activity;0.00475572633088295!GO:0045947;negative regulation of translational initiation;0.0048707261688571!GO:0043284;biopolymer biosynthetic process;0.00489504660312118!GO:0006220;pyrimidine nucleotide metabolic process;0.00499803970852138!GO:0030518;steroid hormone receptor signaling pathway;0.00518908251764321!GO:0008017;microtubule binding;0.00523130731951558!GO:0009303;rRNA transcription;0.00587254014271428!GO:0004843;ubiquitin-specific protease activity;0.00591823140054486!GO:0051297;centrosome organization and biogenesis;0.00591823140054486!GO:0031023;microtubule organizing center organization and biogenesis;0.00591823140054486!GO:0006378;mRNA polyadenylation;0.00591823140054486!GO:0030658;transport vesicle membrane;0.00611478843611342!GO:0044454;nuclear chromosome part;0.0061251226095533!GO:0008234;cysteine-type peptidase activity;0.00633216556502962!GO:0008652;amino acid biosynthetic process;0.00634142369105353!GO:0006519;amino acid and derivative metabolic process;0.00646355803741231!GO:0016584;nucleosome positioning;0.00658839347937599!GO:0051656;establishment of organelle localization;0.00662297017991315!GO:0006278;RNA-dependent DNA replication;0.00699849443906594!GO:0031970;organelle envelope lumen;0.00702382243683366!GO:0005874;microtubule;0.00703230008327323!GO:0016279;protein-lysine N-methyltransferase activity;0.00704272665281429!GO:0018024;histone-lysine N-methyltransferase activity;0.00704272665281429!GO:0016278;lysine N-methyltransferase activity;0.00704272665281429!GO:0044431;Golgi apparatus part;0.00748766033618991!GO:0005832;chaperonin-containing T-complex;0.00773636826801491!GO:0006266;DNA ligation;0.00794321499387813!GO:0051087;chaperone binding;0.00801751818729481!GO:0006355;regulation of transcription, DNA-dependent;0.00808619945265242!GO:0016407;acetyltransferase activity;0.00814121970610197!GO:0006007;glucose catabolic process;0.00816098167433485!GO:0008156;negative regulation of DNA replication;0.00836623755990263!GO:0004519;endonuclease activity;0.00844891505140415!GO:0016408;C-acyltransferase activity;0.00851514753775766!GO:0050790;regulation of catalytic activity;0.0085857459456386!GO:0022411;cellular component disassembly;0.00860375168093631!GO:0016569;covalent chromatin modification;0.00867095545339898!GO:0006376;mRNA splice site selection;0.00876149331876255!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00876149331876255!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00886830200240606!GO:0000018;regulation of DNA recombination;0.00890188091983776!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00893495737996626!GO:0030137;COPI-coated vesicle;0.00894169970965371!GO:0048471;perinuclear region of cytoplasm;0.00896490979463145!GO:0005788;endoplasmic reticulum lumen;0.00902027271445905!GO:0030433;ER-associated protein catabolic process;0.00904367619165124!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.00904367619165124!GO:0008180;signalosome;0.00914605383933431!GO:0035267;NuA4 histone acetyltransferase complex;0.00921271094932513!GO:0000792;heterochromatin;0.0093442185345545!GO:0006406;mRNA export from nucleus;0.00979346094363986!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.00982477775914788!GO:0004221;ubiquitin thiolesterase activity;0.00986442126862808!GO:0016790;thiolester hydrolase activity;0.00986757181565603!GO:0043189;H4/H2A histone acetyltransferase complex;0.00990841166928152!GO:0030118;clathrin coat;0.00990841166928152!GO:0051287;NAD binding;0.00998860556390386!GO:0006730;one-carbon compound metabolic process;0.00999112282558654!GO:0009081;branched chain family amino acid metabolic process;0.0100683362643464!GO:0000119;mediator complex;0.0102211662678988!GO:0000096;sulfur amino acid metabolic process;0.0104246855200318!GO:0009889;regulation of biosynthetic process;0.0105706128343894!GO:0051789;response to protein stimulus;0.0108385002207124!GO:0006986;response to unfolded protein;0.0108385002207124!GO:0009116;nucleoside metabolic process;0.0112317357165661!GO:0045120;pronucleus;0.0113743178744896!GO:0016197;endosome transport;0.0116974632991707!GO:0031647;regulation of protein stability;0.0119405333461175!GO:0004523;ribonuclease H activity;0.0119989336278493!GO:0043624;cellular protein complex disassembly;0.0125763225232555!GO:0006118;electron transport;0.0126168501174396!GO:0035258;steroid hormone receptor binding;0.0127301244877825!GO:0004540;ribonuclease activity;0.012810009611559!GO:0030660;Golgi-associated vesicle membrane;0.0130996227305226!GO:0046112;nucleobase biosynthetic process;0.0131953190454384!GO:0006303;double-strand break repair via nonhomologous end joining;0.0131953190454384!GO:0042809;vitamin D receptor binding;0.0135840410773579!GO:0048487;beta-tubulin binding;0.013600897381114!GO:0051318;G1 phase;0.0137120179061407!GO:0000123;histone acetyltransferase complex;0.0138629409091081!GO:0043022;ribosome binding;0.0148506224335699!GO:0007098;centrosome cycle;0.0149217552254338!GO:0003702;RNA polymerase II transcription factor activity;0.0150919624100455!GO:0051640;organelle localization;0.0155288354592236!GO:0040029;regulation of gene expression, epigenetic;0.015550663642243!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0156486352355461!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0156486352355461!GO:0009126;purine nucleoside monophosphate metabolic process;0.0156486352355461!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0156486352355461!GO:0030867;rough endoplasmic reticulum membrane;0.0159613571042128!GO:0032039;integrator complex;0.0159629835736576!GO:0000175;3'-5'-exoribonuclease activity;0.0160289449075628!GO:0033170;DNA-protein loading ATPase activity;0.0160289449075628!GO:0003689;DNA clamp loader activity;0.0160289449075628!GO:0008536;Ran GTPase binding;0.0167220514813483!GO:0007050;cell cycle arrest;0.0167220514813483!GO:0030134;ER to Golgi transport vesicle;0.0167910914783452!GO:0050662;coenzyme binding;0.0172739272345458!GO:0032984;macromolecular complex disassembly;0.0173240831753636!GO:0005869;dynactin complex;0.0178516961451952!GO:0006506;GPI anchor biosynthetic process;0.0178550423692547!GO:0042802;identical protein binding;0.0184662496082898!GO:0000209;protein polyubiquitination;0.0190261817509963!GO:0005658;alpha DNA polymerase:primase complex;0.0190261817509963!GO:0005487;nucleocytoplasmic transporter activity;0.0194434015626163!GO:0000084;S phase of mitotic cell cycle;0.0195551411666779!GO:0065007;biological regulation;0.019688949856739!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0198519580664435!GO:0001522;pseudouridine synthesis;0.0199579392171134!GO:0030119;AP-type membrane coat adaptor complex;0.0200364269048587!GO:0031902;late endosome membrane;0.0202821296299558!GO:0008538;proteasome activator activity;0.0203666831310453!GO:0005680;anaphase-promoting complex;0.0206802411927937!GO:0008170;N-methyltransferase activity;0.0206983716327458!GO:0005652;nuclear lamina;0.0208512418982546!GO:0004576;oligosaccharyl transferase activity;0.0208768237489101!GO:0005732;small nucleolar ribonucleoprotein complex;0.0210498748018265!GO:0000930;gamma-tubulin complex;0.0211563603197569!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0213459592421404!GO:0045039;protein import into mitochondrial inner membrane;0.0213459592421404!GO:0006505;GPI anchor metabolic process;0.0216449717150527!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0218132451212225!GO:0044440;endosomal part;0.0219271837054136!GO:0010008;endosome membrane;0.0219271837054136!GO:0008097;5S rRNA binding;0.0226238833576553!GO:0006541;glutamine metabolic process;0.0226264429025362!GO:0006497;protein amino acid lipidation;0.0227793017825123!GO:0016301;kinase activity;0.0228743255271662!GO:0007021;tubulin folding;0.0230141882069777!GO:0008143;poly(A) binding;0.0230801759943106!GO:0008287;protein serine/threonine phosphatase complex;0.0231064409631155!GO:0043631;RNA polyadenylation;0.0231083122494574!GO:0030127;COPII vesicle coat;0.023163982233669!GO:0012507;ER to Golgi transport vesicle membrane;0.023163982233669!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0237161415123442!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0238440422231965!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0239750489923378!GO:0030496;midbody;0.0239991959648873!GO:0050000;chromosome localization;0.0243926788043011!GO:0051303;establishment of chromosome localization;0.0243926788043011!GO:0005666;DNA-directed RNA polymerase III complex;0.0245675195480056!GO:0032561;guanyl ribonucleotide binding;0.0247444289421903!GO:0019001;guanyl nucleotide binding;0.0247444289421903!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0252883416015276!GO:0007010;cytoskeleton organization and biogenesis;0.0253538406546489!GO:0051338;regulation of transferase activity;0.0254504622984074!GO:0006301;postreplication repair;0.0254921339591766!GO:0019206;nucleoside kinase activity;0.0255164856599988!GO:0030131;clathrin adaptor complex;0.0260224689303235!GO:0008250;oligosaccharyl transferase complex;0.0260780504427334!GO:0001832;blastocyst growth;0.0261631095546143!GO:0017134;fibroblast growth factor binding;0.026557218927911!GO:0030041;actin filament polymerization;0.0267711499199335!GO:0005769;early endosome;0.0267711499199335!GO:0000097;sulfur amino acid biosynthetic process;0.0268528861433098!GO:0009113;purine base biosynthetic process;0.0272897986368345!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0275234353347649!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0275238481012905!GO:0005521;lamin binding;0.0276036823970285!GO:0006379;mRNA cleavage;0.0279660500769643!GO:0030522;intracellular receptor-mediated signaling pathway;0.0280539838448531!GO:0000080;G1 phase of mitotic cell cycle;0.0280643136187226!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0283352801756008!GO:0043241;protein complex disassembly;0.0291008135444961!GO:0045815;positive regulation of gene expression, epigenetic;0.0293973593390931!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0296842026455948!GO:0016570;histone modification;0.0303299916632166!GO:0030261;chromosome condensation;0.0309008100822181!GO:0004177;aminopeptidase activity;0.0309008100822181!GO:0008213;protein amino acid alkylation;0.0309008100822181!GO:0006479;protein amino acid methylation;0.0309008100822181!GO:0007346;regulation of progression through mitotic cell cycle;0.0313274708583596!GO:0005092;GDP-dissociation inhibitor activity;0.0316094463277325!GO:0006096;glycolysis;0.0325629330397336!GO:0005773;vacuole;0.0325729998757179!GO:0005784;translocon complex;0.0326823285814472!GO:0046365;monosaccharide catabolic process;0.0327621505371591!GO:0006415;translational termination;0.0329782799910666!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0330563928683304!GO:0010257;NADH dehydrogenase complex assembly;0.0330563928683304!GO:0033108;mitochondrial respiratory chain complex assembly;0.0330563928683304!GO:0009067;aspartate family amino acid biosynthetic process;0.0331118466261834!GO:0001824;blastocyst development;0.0334634653889645!GO:0009396;folic acid and derivative biosynthetic process;0.03348253995655!GO:0009083;branched chain family amino acid catabolic process;0.0339668537880376!GO:0030174;regulation of DNA replication initiation;0.0353604508672512!GO:0032040;small subunit processome;0.0356851486622273!GO:0043065;positive regulation of apoptosis;0.0357019504917623!GO:0043549;regulation of kinase activity;0.0357019504917623!GO:0000731;DNA synthesis during DNA repair;0.0358520955908279!GO:0019238;cyclohydrolase activity;0.0363292063819221!GO:0007243;protein kinase cascade;0.036483133103508!GO:0008537;proteasome activator complex;0.0367285732998151!GO:0015036;disulfide oxidoreductase activity;0.0367419693142769!GO:0031371;ubiquitin conjugating enzyme complex;0.0376655748118378!GO:0006740;NADPH regeneration;0.0383975749759647!GO:0006098;pentose-phosphate shunt;0.0383975749759647!GO:0000086;G2/M transition of mitotic cell cycle;0.0388557366678768!GO:0000777;condensed chromosome kinetochore;0.0390477814044539!GO:0000779;condensed chromosome, pericentric region;0.0390477814044539!GO:0009066;aspartate family amino acid metabolic process;0.0395876681230327!GO:0006596;polyamine biosynthetic process;0.0397632948693585!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0408043184839178!GO:0004239;methionyl aminopeptidase activity;0.040902151182007!GO:0046164;alcohol catabolic process;0.0409427674617781!GO:0033261;regulation of progression through S phase;0.0414372035361712!GO:0046128;purine ribonucleoside metabolic process;0.0416115418513762!GO:0042278;purine nucleoside metabolic process;0.0416115418513762!GO:0043068;positive regulation of programmed cell death;0.0418335918299696!GO:0042769;DNA damage response, detection of DNA damage;0.0424097434483262!GO:0008320;protein transmembrane transporter activity;0.0424274739739083!GO:0016180;snRNA processing;0.0424274739739083!GO:0016073;snRNA metabolic process;0.0424274739739083!GO:0007076;mitotic chromosome condensation;0.0427995232009638!GO:0030176;integral to endoplasmic reticulum membrane;0.0437069015943925!GO:0004536;deoxyribonuclease activity;0.0437069015943925!GO:0042026;protein refolding;0.0438137893291925!GO:0016126;sterol biosynthetic process;0.044303583311971!GO:0042162;telomeric DNA binding;0.0444231999770757!GO:0005996;monosaccharide metabolic process;0.044453594821717!GO:0032404;mismatch repair complex binding;0.0446069017242796!GO:0005675;holo TFIIH complex;0.0447218470872776!GO:0016585;chromatin remodeling complex;0.0449591662999275!GO:0048037;cofactor binding;0.0449699364302617!GO:0016605;PML body;0.0453116608366255!GO:0030132;clathrin coat of coated pit;0.0465905868948693!GO:0004520;endodeoxyribonuclease activity;0.0468355134963412!GO:0019318;hexose metabolic process;0.0472828736746085!GO:0006221;pyrimidine nucleotide biosynthetic process;0.0473306656125306!GO:0008629;induction of apoptosis by intracellular signals;0.0473306656125306!GO:0045859;regulation of protein kinase activity;0.0478756926281217!GO:0008270;zinc ion binding;0.0480643129166216!GO:0008637;apoptotic mitochondrial changes;0.0488056433227009!GO:0006308;DNA catabolic process;0.0488056433227009!GO:0042158;lipoprotein biosynthetic process;0.0490315204515127!GO:0003893;epsilon DNA polymerase activity;0.0495242561785915
|sample_id=10534
|sample_note=
|sample_sex=unknown
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=blood
|top_motifs=MYB:2.3740301558;E2F1..5:2.36094457063;PBX1:2.05434538639;POU2F1..3:1.97421656268;NKX2-1,4:1.64368936566;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.58651212195;NFY{A,B,C}:1.55831472998;FOX{I1,J2}:1.50655751035;ZNF143:1.44027475523;BREu{core}:1.38135531735;YY1:1.26383446033;FOXA2:1.23329866945;PDX1:1.21326224764;IKZF2:1.20590515488;HES1:1.1920672689;PAX4:1.08948612389;TFDP1:1.06787392024;PITX1..3:1.05264275582;SOX{8,9,10}:1.01351160331;NRF1:0.966051750502;GFI1:0.948218905844;ELF1,2,4:0.93138890711;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.92348466872;DMAP1_NCOR{1,2}_SMARC:0.893218993955;CDX1,2,4:0.843311731198;BPTF:0.830578341487;POU5F1:0.824008145247;RBPJ:0.772365871375;AR:0.751966436116;NKX2-2,8:0.748997414462;PAX8:0.676738720061;CUX2:0.65896744658;PAX3,7:0.6344908983;ELK1,4_GABP{A,B1}:0.614475414559;OCT4_SOX2{dimer}:0.612430813613;SOX17:0.604648401693;GATA6:0.582600860469;STAT5{A,B}:0.569379045636;NR5A1,2:0.493891426596;NKX6-1,2:0.49225779239;NANOG{mouse}:0.474192091791;T:0.461934695089;SOX5:0.461895513946;FOX{F1,F2,J1}:0.456434100938;IRF1,2:0.451966330671;HAND1,2:0.447745317418;TGIF1:0.44672839648;FOXP1:0.445088202068;EVI1:0.434549449487;NKX2-3_NKX2-5:0.424622996082;NANOG:0.42306519119;TEF:0.415251170846;TOPORS:0.371953239288;FOXP3:0.371432137822;AIRE:0.363640229116;VSX1,2:0.360971578091;SPI1:0.34776200771;ATF5_CREB3:0.341259582187;RUNX1..3:0.335872927972;ALX1:0.295979990903;MYBL2:0.248259805257;FOXQ1:0.230207799879;HOX{A6,A7,B6,B7}:0.225996087356;SPIB:0.215182890144;AHR_ARNT_ARNT2:0.210097584086;PAX6:0.205638178938;ARID5B:0.175830571678;PRRX1,2:0.1704764011;RORA:0.16800796848;DBP:0.162677446647;SOX2:0.154107114997;HOX{A4,D4}:0.145906862118;FOXM1:0.137188324278;CRX:0.123339748555;LMO2:0.117792158655;bHLH_family:0.0980066343576;ZBTB16:0.0959938438806;POU1F1:0.0937163505754;HOX{A5,B5}:0.0718504402029;CREB1:0.0610669556655;FOXN1:0.0583105876738;HNF4A_NR2F1,2:0.0074477707091;MEF2{A,B,C,D}:0.00623854607708;GATA4:0.00147361270686;RXRA_VDR{dimer}:-0.0414687716706;ADNP_IRX_SIX_ZHX:-0.0438190852678;ZEB1:-0.0440427056528;ZNF384:-0.0728980417528;EN1,2:-0.079380986762;ETS1,2:-0.0927958406298;PAX2:-0.112138034747;SNAI1..3:-0.132324546689;NFIL3:-0.137893173962;POU6F1:-0.157488045419;CDC5L:-0.15769804999;PPARG:-0.161543979188;POU3F1..4:-0.161806198959;MTF1:-0.164528232196;KLF4:-0.167643532721;STAT1,3:-0.192647927252;HNF1A:-0.21053893276;FOXD3:-0.216782490821;SMAD1..7,9:-0.22575387517;NFKB1_REL_RELA:-0.255038216698;ZIC1..3:-0.260070567565;LEF1_TCF7_TCF7L1,2:-0.289389339893;FOXO1,3,4:-0.295818393767;HOXA9_MEIS1:-0.296416280875;LHX3,4:-0.308841557517;NKX3-2:-0.35355388743;MYOD1:-0.360356483718;IRF7:-0.369466542393;ZFP161:-0.382980552118;PAX1,9:-0.391099071957;HBP1_HMGB_SSRP1_UBTF:-0.39624811555;HIF1A:-0.397614255609;PRDM1:-0.397900593834;ATF4:-0.426741643632;NFIX:-0.430734224358;NHLH1,2:-0.46280613581;NR1H4:-0.474624496583;ESR1:-0.486023258822;RXR{A,B,G}:-0.492431231666;RFX1:-0.49468123619;FOXL1:-0.496438986025;GFI1B:-0.501958560079;ZNF238:-0.502798165233;TAL1_TCF{3,4,12}:-0.519400794337;ONECUT1,2:-0.527797270682;UFEwm:-0.540902712291;CEBPA,B_DDIT3:-0.542892542794;RFX2..5_RFXANK_RFXAP:-0.545442308998;FOSL2:-0.576873559625;NR6A1:-0.582650359013;RREB1:-0.587778339862;ZNF423:-0.596665897446;FOS_FOS{B,L1}_JUN{B,D}:-0.61972573737;MTE{core}:-0.637136512049;SREBF1,2:-0.63860574273;XBP1:-0.64675009218;TLX2:-0.651925483711;BACH2:-0.667808326277;NFE2:-0.704208170024;TP53:-0.705809386871;ESRRA:-0.713645283205;MZF1:-0.744650310878;GCM1,2:-0.766082427985;HLF:-0.787293798528;NR3C1:-0.792015261077;HSF1,2:-0.819809676444;PATZ1:-0.833939324637;MED-1{core}:-0.89842069169;IKZF1:-0.910793013336;REST:-0.937535534958;MYFfamily:-0.937918246551;SPZ1:-0.947976944681;NFATC1..3:-0.958324806063;GZF1:-0.958898602175;FOX{D1,D2}:-0.97818775494;GTF2A1,2:-0.986867128399;JUN:-0.987123500162;HIC1:-1.02636777771;NFE2L1:-1.02683950659;ALX4:-1.06462961433;PAX5:-1.09113311374;NFE2L2:-1.12803321561;NKX3-1:-1.13043357946;ZNF148:-1.15876644699;HMX1:-1.17908657506;EBF1:-1.18866595898;HMGA1,2:-1.20098603676;GTF2I:-1.20891005899;EP300:-1.20949219184;ATF2:-1.2281895977;XCPE1{core}:-1.23603763616;ZBTB6:-1.25606223767;TBP:-1.27420825653;MAZ:-1.33744579626;STAT2,4,6:-1.36660831676;TEAD1:-1.37184298683;ATF6:-1.38168518163;MAFB:-1.45026821524;SRF:-1.45285840746;TFAP2B:-1.5060466601;EGR1..3:-1.5237666216;TLX1..3_NFIC{dimer}:-1.54185252522;GLI1..3:-1.54749772348;TFAP2{A,C}:-1.54998712769;SP1:-1.62286192005;TFAP4:-1.67115940286;TBX4,5:-1.88677917039;TFCP2:-2.10491771066
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10534-107G3;search_select_hide=table117:FF:10534-107G3
}}
}}

Latest revision as of 14:28, 3 June 2020

Name:acute lymphoblastic leukemia (B-ALL) cell line:NALM-6
Species:Human (Homo sapiens)
Library ID:CNhs11282
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexunknown
ageNA
cell typeb cell
cell lineNALM-6
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005931
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11282 CAGE DRX007798 DRR008670
Accession ID Hg19

Library idBAMCTSS
CNhs11282 DRZ000095 DRZ001480
Accession ID Hg38

Library idBAMCTSS
CNhs11282 DRZ011445 DRZ012830
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.102
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.774
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0657
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0.907
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.11
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.277
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.293
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.885
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.11
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0371
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0415
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.735
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.175
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11282

Jaspar motifP-value
MA0002.20.936
MA0003.10.549
MA0004.10.0179
MA0006.10.129
MA0007.10.575
MA0009.10.463
MA0014.10.968
MA0017.10.186
MA0018.20.65
MA0019.10.159
MA0024.11.35506e-14
MA0025.10.36
MA0027.15.02718e-4
MA0028.17.62186e-4
MA0029.10.408
MA0030.10.573
MA0031.10.918
MA0035.20.0717
MA0038.10.112
MA0039.20.322
MA0040.10.0288
MA0041.10.336
MA0042.10.871
MA0043.10.255
MA0046.10.384
MA0047.20.863
MA0048.10.412
MA0050.10.0238
MA0051.10.0825
MA0052.10.083
MA0055.10.0686
MA0057.10.991
MA0058.10.0148
MA0059.12.08616e-4
MA0060.13.39946e-13
MA0061.10.929
MA0062.26.12314e-6
MA0065.20.0453
MA0066.10.87
MA0067.10.848
MA0068.10.62
MA0069.10.395
MA0070.10.0284
MA0071.10.415
MA0072.10.438
MA0073.10.861
MA0074.10.456
MA0076.15.40344e-5
MA0077.10.656
MA0078.10.953
MA0079.20.162
MA0080.20.0707
MA0081.10.0522
MA0083.14.44839e-10
MA0084.10.852
MA0087.10.39
MA0088.10.00182
MA0090.11.33431e-5
MA0091.10.264
MA0092.10.845
MA0093.10.0218
MA0099.22.10158e-11
MA0100.13.0566e-4
MA0101.10.24
MA0102.20.0287
MA0103.10.341
MA0104.21.48542e-5
MA0105.10.169
MA0106.10.554
MA0107.10.0521
MA0108.21.47455e-7
MA0111.10.332
MA0112.20.75
MA0113.10.272
MA0114.10.0404
MA0115.10.00788
MA0116.10.00604
MA0117.10.98
MA0119.10.657
MA0122.10.515
MA0124.10.252
MA0125.10.916
MA0131.10.0485
MA0135.10.1
MA0136.18.97159e-4
MA0137.20.0661
MA0138.20.829
MA0139.10.467
MA0140.10.0131
MA0141.10.541
MA0142.10.112
MA0143.10.703
MA0144.10.0394
MA0145.10.0391
MA0146.10.852
MA0147.13.32456e-6
MA0148.10.784
MA0149.10.147
MA0150.10.00508
MA0152.10.799
MA0153.10.0218
MA0154.10.174
MA0155.10.312
MA0156.10.0022
MA0157.10.384
MA0159.10.434
MA0160.10.496
MA0162.10.971
MA0163.14.47274e-6
MA0164.10.938
MA0258.10.795
MA0259.10.0112



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11282

Novel motifP-value
10.0536
100.0321
1000.115
1010.602
1020.966
1030.581
1040.769
1050.871
1060.595
1070.172
1080.375
1090.172
110.168
1100.231
1110.192
1120.35
1130.648
1140.801
1150.53
1160.895
1170.0366
1180.494
1190.913
120.372
1200.395
1210.957
1220.932
1230.00638
1240.136
1250.306
1260.834
1270.159
1280.314
1290.597
130.0415
1300.184
1310.0535
1320.503
1330.319
1340.981
1350.212
1360.438
1370.541
1380.227
1390.273
140.897
1400.742
1410.117
1420.442
1430.709
1440.709
1450.733
1460.729
1470.291
1480.425
1490.243
150.24
1500.54
1510.398
1520.0162
1530.931
1540.656
1550.0102
1560.817
1570.224
1580.202
1590.535
160.477
1600.327
1610.183
1620.97
1630.911
1640.464
1650.836
1660.371
1670.0365
1680.47
1690.335
170.532
180.958
190.351
20.127
200.283
210.306
220.52
230.00989
240.81
250.131
260.0825
270.838
280.865
290.0296
30.434
300.0625
310.607
320.0125
330.689
340.367
350.158
360.0431
370.844
380.964
390.101
40.13
400.155
410.792
420.28
430.825
440.51
450.182
460.0998
470.0709
480.25
490.197
50.919
500.729
510.907
520.139
530.861
540.504
550.133
560.703
570.0907
580.57
590.488
60.987
600.491
610.0933
620.499
630.475
640.425
650.279
660.0133
670.957
680.0309
690.613
70.149
700.17
710.0523
720.685
730.18
740.763
750.0311
760.408
770.367
780.0601
790.173
80.328
800.716
810.499
820.402
830.59
840.459
850.0127
860.523
870.604
880.629
890.358
90.379
900.0231
910.405
920.0567
930.705
940.525
950.165
960.714
970.359
980.504
990.171



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11282


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000236 (B cell)
0000817 (precursor B cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0102144 (acute lymphoblastic leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0100741 (lymphocytic leukemia cell line sample)
0100773 (lymphoblastoid cell line sample)
0100739 (lymphoblastic leukemia cell line sample)
0100603 (pre-B acute lymphoblastic leukemia cell line sample)
0103288 (NALM-6 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

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