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Line 101: Line 101:
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.70652013438;ELK1,4_GABP{A,B1}:2.47713655955;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.01756271496;bHLH_family:1.85637541977;HOX{A6,A7,B6,B7}:1.8545014033;HES1:1.76531583895;E2F1..5:1.5000281673;NKX3-1:1.44673627788;FOXQ1:1.44324465993;ZNF143:1.39383147563;HIF1A:1.29468401848;VSX1,2:1.25324464657;ATF4:1.2506000609;NRF1:1.24403632226;RORA:1.23575221103;YY1:1.12302091081;CREB1:1.09767635229;NR6A1:1.00065725925;PBX1:0.973092515075;FOXN1:0.953893110721;NR5A1,2:0.933364843341;NKX2-1,4:0.846919470493;IKZF1:0.822550161654;CEBPA,B_DDIT3:0.806726947469;TBX4,5:0.77658260588;FOX{F1,F2,J1}:0.760832477749;AHR_ARNT_ARNT2:0.742781941421;MYB:0.670556214194;EN1,2:0.639120706336;RBPJ:0.638443282057;ARID5B:0.606446526457;ESRRA:0.604341611647;CRX:0.599510958427;BREu{core}:0.59178174078;PPARG:0.581833051262;NFY{A,B,C}:0.581424802446;STAT1,3:0.575224057407;TFDP1:0.574022617564;FOX{I1,J2}:0.5580360341;PRRX1,2:0.543614237585;ELF1,2,4:0.530741584487;HOXA9_MEIS1:0.516640770286;POU1F1:0.514382478005;ATF5_CREB3:0.512749560533;PITX1..3:0.505865745894;POU2F1..3:0.477406460753;HBP1_HMGB_SSRP1_UBTF:0.430595096872;HOX{A5,B5}:0.427116582387;GFI1:0.412007267888;PDX1:0.397658609994;LHX3,4:0.343800064936;FOXP1:0.337616878256;LMO2:0.329185537877;HLF:0.326789004476;FOXM1:0.311513664815;ZBTB16:0.304923861319;EVI1:0.268192616581;LEF1_TCF7_TCF7L1,2:0.265986058165;NKX6-1,2:0.265912902834;ZEB1:0.246726828404;TEAD1:0.243435012127;HNF4A_NR2F1,2:0.228924444837;TEF:0.201132034731;PAX1,9:0.197057020576;MEF2{A,B,C,D}:0.189493328552;ADNP_IRX_SIX_ZHX:0.175005005049;NANOG:0.082240742794;BPTF:0.0725219629553;CUX2:0.0693421747757;RXR{A,B,G}:0.0683458943433;PAX3,7:0.0635026978346;PAX2:0.0588017982585;IRF7:0.0530749220206;SNAI1..3:0.0501689977962;RFX1:0.0472486868078;DBP:0.0254751885912;GATA6:0.0170529605746;TP53:0.0141136924857;OCT4_SOX2{dimer}:0.00106135823773;FOX{D1,D2}:-0.00845652578332;NR1H4:-0.0159152086131;TLX1..3_NFIC{dimer}:-0.015915477507;POU5F1:-0.0278058871346;T:-0.0281048091737;JUN:-0.0479987245362;PAX4:-0.061530607852;FOXA2:-0.0651722610302;STAT5{A,B}:-0.0776546958569;RFX2..5_RFXANK_RFXAP:-0.0844332789921;POU6F1:-0.0846906499669;NFE2:-0.106067940896;AIRE:-0.137965545512;CDX1,2,4:-0.149004907731;ATF2:-0.180961125397;NFIL3:-0.18200314664;MYBL2:-0.184808323043;ATF6:-0.186280988396;FOXD3:-0.1890678855;ZNF423:-0.194285440222;TOPORS:-0.212788199299;SOX2:-0.219320694736;HMGA1,2:-0.221175858341;FOXL1:-0.237945008818;NFE2L2:-0.238194081158;HNF1A:-0.247554160708;PAX8:-0.250290488556;IRF1,2:-0.255802439471;HOX{A4,D4}:-0.260526251413;MAFB:-0.262008011744;GLI1..3:-0.279720382073;GTF2A1,2:-0.285174670908;SOX{8,9,10}:-0.296331481648;BACH2:-0.302250096498;SOX5:-0.303523533497;IKZF2:-0.30763114155;FOS_FOS{B,L1}_JUN{B,D}:-0.31756787509;NKX2-3_NKX2-5:-0.319887522889;ZNF148:-0.326017404296;CDC5L:-0.333554508143;ZBTB6:-0.341418572763;FOXO1,3,4:-0.359748307656;MYOD1:-0.360375540933;STAT2,4,6:-0.361653790698;ZFP161:-0.381963477838;NFE2L1:-0.396866279364;HIC1:-0.402793491619;NR3C1:-0.412457427496;NFKB1_REL_RELA:-0.422812811458;MTF1:-0.432117457562;FOXP3:-0.469020430037;AR:-0.472571998159;ZNF384:-0.480703567716;SPIB:-0.482777065946;FOSL2:-0.483572421454;DMAP1_NCOR{1,2}_SMARC:-0.494129787081;NKX3-2:-0.520250234445;PAX5:-0.528424398887;EBF1:-0.53878934472;XBP1:-0.541211097972;MED-1{core}:-0.551710942317;REST:-0.553761695047;HAND1,2:-0.564215725029;RXRA_VDR{dimer}:-0.564670489789;GZF1:-0.565188237976;SREBF1,2:-0.568376954334;RUNX1..3:-0.575382708857;NKX2-2,8:-0.575923393895;SPI1:-0.579228150354;MTE{core}:-0.580224096752;EP300:-0.585592832095;KLF4:-0.612880190383;GTF2I:-0.616432956061;UFEwm:-0.639599749093;NHLH1,2:-0.667920686794;NFIX:-0.676715924569;ETS1,2:-0.68646579117;TAL1_TCF{3,4,12}:-0.700711534649;ESR1:-0.728090326509;GFI1B:-0.730193323315;TFAP2{A,C}:-0.734062994595;GCM1,2:-0.746688062952;ONECUT1,2:-0.75327221215;ALX4:-0.767083196553;SRF:-0.792301696047;TFAP2B:-0.799940491682;RREB1:-0.833187375145;HSF1,2:-0.857240426245;SOX17:-0.873492247962;MAZ:-0.887112420934;TBP:-0.911237320166;PRDM1:-0.911877158544;POU3F1..4:-0.912304968674;MYFfamily:-0.997442687091;PATZ1:-1.0176501573;ZNF238:-1.02519501217;EGR1..3:-1.0418087735;ALX1:-1.04396416462;MZF1:-1.09396693022;PAX6:-1.11266399213;TLX2:-1.11455716278;TGIF1:-1.11954784659;NFATC1..3:-1.13260615601;SP1:-1.16124136206;XCPE1{core}:-1.19671531234;ZIC1..3:-1.29814853282;GATA4:-1.38233522178;NANOG{mouse}:-1.44273104423;TFCP2:-1.58941646746;SMAD1..7,9:-1.61436912623;HMX1:-1.73308112872;TFAP4:-2.0746764094;SPZ1:-2.49989115833
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.70652013438;ELK1,4_GABP{A,B1}:2.47713655955;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.01756271496;bHLH_family:1.85637541977;HOX{A6,A7,B6,B7}:1.8545014033;HES1:1.76531583895;E2F1..5:1.5000281673;NKX3-1:1.44673627788;FOXQ1:1.44324465993;ZNF143:1.39383147563;HIF1A:1.29468401848;VSX1,2:1.25324464657;ATF4:1.2506000609;NRF1:1.24403632226;RORA:1.23575221103;YY1:1.12302091081;CREB1:1.09767635229;NR6A1:1.00065725925;PBX1:0.973092515075;FOXN1:0.953893110721;NR5A1,2:0.933364843341;NKX2-1,4:0.846919470493;IKZF1:0.822550161654;CEBPA,B_DDIT3:0.806726947469;TBX4,5:0.77658260588;FOX{F1,F2,J1}:0.760832477749;AHR_ARNT_ARNT2:0.742781941421;MYB:0.670556214194;EN1,2:0.639120706336;RBPJ:0.638443282057;ARID5B:0.606446526457;ESRRA:0.604341611647;CRX:0.599510958427;BREu{core}:0.59178174078;PPARG:0.581833051262;NFY{A,B,C}:0.581424802446;STAT1,3:0.575224057407;TFDP1:0.574022617564;FOX{I1,J2}:0.5580360341;PRRX1,2:0.543614237585;ELF1,2,4:0.530741584487;HOXA9_MEIS1:0.516640770286;POU1F1:0.514382478005;ATF5_CREB3:0.512749560533;PITX1..3:0.505865745894;POU2F1..3:0.477406460753;HBP1_HMGB_SSRP1_UBTF:0.430595096872;HOX{A5,B5}:0.427116582387;GFI1:0.412007267888;PDX1:0.397658609994;LHX3,4:0.343800064936;FOXP1:0.337616878256;LMO2:0.329185537877;HLF:0.326789004476;FOXM1:0.311513664815;ZBTB16:0.304923861319;EVI1:0.268192616581;LEF1_TCF7_TCF7L1,2:0.265986058165;NKX6-1,2:0.265912902834;ZEB1:0.246726828404;TEAD1:0.243435012127;HNF4A_NR2F1,2:0.228924444837;TEF:0.201132034731;PAX1,9:0.197057020576;MEF2{A,B,C,D}:0.189493328552;ADNP_IRX_SIX_ZHX:0.175005005049;NANOG:0.082240742794;BPTF:0.0725219629553;CUX2:0.0693421747757;RXR{A,B,G}:0.0683458943433;PAX3,7:0.0635026978346;PAX2:0.0588017982585;IRF7:0.0530749220206;SNAI1..3:0.0501689977962;RFX1:0.0472486868078;DBP:0.0254751885912;GATA6:0.0170529605746;TP53:0.0141136924857;OCT4_SOX2{dimer}:0.00106135823773;FOX{D1,D2}:-0.00845652578332;NR1H4:-0.0159152086131;TLX1..3_NFIC{dimer}:-0.015915477507;POU5F1:-0.0278058871346;T:-0.0281048091737;JUN:-0.0479987245362;PAX4:-0.061530607852;FOXA2:-0.0651722610302;STAT5{A,B}:-0.0776546958569;RFX2..5_RFXANK_RFXAP:-0.0844332789921;POU6F1:-0.0846906499669;NFE2:-0.106067940896;AIRE:-0.137965545512;CDX1,2,4:-0.149004907731;ATF2:-0.180961125397;NFIL3:-0.18200314664;MYBL2:-0.184808323043;ATF6:-0.186280988396;FOXD3:-0.1890678855;ZNF423:-0.194285440222;TOPORS:-0.212788199299;SOX2:-0.219320694736;HMGA1,2:-0.221175858341;FOXL1:-0.237945008818;NFE2L2:-0.238194081158;HNF1A:-0.247554160708;PAX8:-0.250290488556;IRF1,2:-0.255802439471;HOX{A4,D4}:-0.260526251413;MAFB:-0.262008011744;GLI1..3:-0.279720382073;GTF2A1,2:-0.285174670908;SOX{8,9,10}:-0.296331481648;BACH2:-0.302250096498;SOX5:-0.303523533497;IKZF2:-0.30763114155;FOS_FOS{B,L1}_JUN{B,D}:-0.31756787509;NKX2-3_NKX2-5:-0.319887522889;ZNF148:-0.326017404296;CDC5L:-0.333554508143;ZBTB6:-0.341418572763;FOXO1,3,4:-0.359748307656;MYOD1:-0.360375540933;STAT2,4,6:-0.361653790698;ZFP161:-0.381963477838;NFE2L1:-0.396866279364;HIC1:-0.402793491619;NR3C1:-0.412457427496;NFKB1_REL_RELA:-0.422812811458;MTF1:-0.432117457562;FOXP3:-0.469020430037;AR:-0.472571998159;ZNF384:-0.480703567716;SPIB:-0.482777065946;FOSL2:-0.483572421454;DMAP1_NCOR{1,2}_SMARC:-0.494129787081;NKX3-2:-0.520250234445;PAX5:-0.528424398887;EBF1:-0.53878934472;XBP1:-0.541211097972;MED-1{core}:-0.551710942317;REST:-0.553761695047;HAND1,2:-0.564215725029;RXRA_VDR{dimer}:-0.564670489789;GZF1:-0.565188237976;SREBF1,2:-0.568376954334;RUNX1..3:-0.575382708857;NKX2-2,8:-0.575923393895;SPI1:-0.579228150354;MTE{core}:-0.580224096752;EP300:-0.585592832095;KLF4:-0.612880190383;GTF2I:-0.616432956061;UFEwm:-0.639599749093;NHLH1,2:-0.667920686794;NFIX:-0.676715924569;ETS1,2:-0.68646579117;TAL1_TCF{3,4,12}:-0.700711534649;ESR1:-0.728090326509;GFI1B:-0.730193323315;TFAP2{A,C}:-0.734062994595;GCM1,2:-0.746688062952;ONECUT1,2:-0.75327221215;ALX4:-0.767083196553;SRF:-0.792301696047;TFAP2B:-0.799940491682;RREB1:-0.833187375145;HSF1,2:-0.857240426245;SOX17:-0.873492247962;MAZ:-0.887112420934;TBP:-0.911237320166;PRDM1:-0.911877158544;POU3F1..4:-0.912304968674;MYFfamily:-0.997442687091;PATZ1:-1.0176501573;ZNF238:-1.02519501217;EGR1..3:-1.0418087735;ALX1:-1.04396416462;MZF1:-1.09396693022;PAX6:-1.11266399213;TLX2:-1.11455716278;TGIF1:-1.11954784659;NFATC1..3:-1.13260615601;SP1:-1.16124136206;XCPE1{core}:-1.19671531234;ZIC1..3:-1.29814853282;GATA4:-1.38233522178;NANOG{mouse}:-1.44273104423;TFCP2:-1.58941646746;SMAD1..7,9:-1.61436912623;HMX1:-1.73308112872;TFAP4:-2.0746764094;SPZ1:-2.49989115833
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10552-107I3;search_select_hide=table117:FF:10552-107I3
}}
}}

Latest revision as of 14:29, 3 June 2020

Name:cervical cancer cell line:D98-AH2
Species:Human (Homo sapiens)
Library ID:CNhs11288
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecervix
dev stageNA
sexfemale
ageunknown
cell typeunclassifiable
cell lineD98-AH2
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005160
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11288 CAGE DRX007845 DRR008717
Accession ID Hg19

Library idBAMCTSS
CNhs11288 DRZ000142 DRZ001527
Accession ID Hg38

Library idBAMCTSS
CNhs11288 DRZ011492 DRZ012877
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10063downloaddownloaddownloaddownload
NCig10127downloaddownloaddownloaddownload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
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C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11288

Jaspar motifP-value
MA0002.20.00386
MA0003.10.248
MA0004.10.0045
MA0006.10.0845
MA0007.10.27
MA0009.10.739
MA0014.10.208
MA0017.10.714
MA0018.24.19232e-6
MA0019.10.178
MA0024.15.78333e-6
MA0025.10.197
MA0027.10.425
MA0028.14.52922e-12
MA0029.10.397
MA0030.10.00231
MA0031.10.305
MA0035.20.425
MA0038.10.0927
MA0039.20.185
MA0040.10.395
MA0041.10.638
MA0042.10.743
MA0043.11.11545e-6
MA0046.10.944
MA0047.20.0626
MA0048.10.0219
MA0050.10.599
MA0051.10.555
MA0052.10.566
MA0055.15.44567e-6
MA0057.10.543
MA0058.14.60377e-5
MA0059.19.83233e-5
MA0060.10.0129
MA0061.10.102
MA0062.27.19352e-11
MA0065.20.0767
MA0066.10.626
MA0067.10.296
MA0068.10.141
MA0069.10.136
MA0070.10.497
MA0071.10.0294
MA0072.10.2
MA0073.10.747
MA0074.10.855
MA0076.12.8652e-14
MA0077.10.146
MA0078.10.0238
MA0079.20.0595
MA0080.23.98275e-7
MA0081.10.492
MA0083.14.84731e-4
MA0084.10.641
MA0087.10.286
MA0088.19.80074e-6
MA0090.10.176
MA0091.10.0118
MA0092.10.406
MA0093.16.0757e-4
MA0099.23.05001e-5
MA0100.10.146
MA0101.10.412
MA0102.20.284
MA0103.10.134
MA0104.24.10164e-6
MA0105.10.195
MA0106.10.15
MA0107.10.142
MA0108.22.99188e-7
MA0111.10.902
MA0112.20.717
MA0113.10.973
MA0114.10.0937
MA0115.10.00792
MA0116.10.997
MA0117.10.477
MA0119.10.693
MA0122.10.206
MA0124.10.592
MA0125.10.364
MA0131.10.0734
MA0135.10.722
MA0136.10.339
MA0137.20.313
MA0138.20.137
MA0139.10.226
MA0140.10.898
MA0141.10.102
MA0142.10.907
MA0143.10.011
MA0144.10.747
MA0145.10.539
MA0146.10.42
MA0147.11.10942e-6
MA0148.10.0171
MA0149.10.0317
MA0150.10.283
MA0152.10.713
MA0153.10.702
MA0154.10.21
MA0155.10.0199
MA0156.10.00362
MA0157.10.853
MA0159.10.116
MA0160.10.14
MA0162.10.598
MA0163.10.171
MA0164.10.611
MA0258.10.556
MA0259.10.00492



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11288

Novel motifP-value
10.256
100.115
1000.0552
1010.285
1020.643
1030.251
1040.664
1050.698
1066.21234e-4
1070.00433
1080.324
1090.0429
110.654
1100.421
1110.406
1120.0783
1130.0304
1140.721
1150.297
1160.762
1170.129
1180.632
1190.607
120.512
1200.98
1210.942
1220.198
1230.621
1240.775
1250.642
1260.894
1270.902
1282.78366e-4
1290.654
139.55915e-5
1300.84
1310.312
1320.525
1330.00154
1340.586
1350.0687
1360.088
1370.185
1380.913
1390.92
140.581
1400.0716
1410.811
1420.346
1430.0114
1440.147
1450.0353
1460.922
1470.579
1480.871
1490.536
150.952
1500.962
1510.765
1520.04
1530.465
1540.329
1550.671
1560.412
1570.675
1580.555
1590.111
160.485
1600.407
1610.596
1620.966
1630.527
1640.0232
1650.681
1660.066
1670.0594
1680.847
1690.671
170.54
180.645
190.321
20.116
200.0391
210.641
220.661
230.00438
240.175
250.404
260.698
270.235
280.816
290.0194
30.791
300.277
310.416
320.165
330.0801
340.191
350.871
360.0379
370.753
380.577
390.318
40.511
400.105
410.085
420.326
430.248
440.46
450.109
460.398
470.486
480.751
490.584
50.399
500.994
510.343
520.045
530.437
540.511
550.197
560.573
570.419
580.917
590.146
60.316
600.186
610.0463
620.842
630.883
640.924
650.274
660.164
670.854
680.668
690.214
70.0831
700.481
710.141
720.677
730.738
740.137
750.0449
760.274
770.502
780.361
790.0708
80.863
800.497
810.601
820.259
830.821
840.312
850.0193
860.568
870.34
880.983
890.538
90.208
900.369
910.00135
920.181
930.941
940.961
950.23
960.457
970.774
980.967
990.517



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11288


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)
120 (female reproductive organ cancer)
4362 (cervical cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000002 (uterine cervix)
0000995 (uterus)
0003134 (female reproductive organ)
0001560 (neck of organ)
0005156 (reproductive structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101967 (cervical cancer cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

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