FF:10553-107I4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005307 | ||
|accession_numbers=CAGE;DRX007846;DRR008718;DRZ000143;DRZ001528;DRZ011493;DRZ012878 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000002,UBERON:0000995,UBERON:0003134,UBERON:0001560,UBERON:0005156,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet=DOID:4,DOID: | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:193,DOID:120,DOID:4362 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0101967 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0101967 | |fonse_cell_line=FF:0101967 | ||
|fonse_cell_line_closure=FF:0101967 | |fonse_cell_line_closure=FF:0101967 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/cervical%2520cancer%2520cell%2520line%253aME-180.CNhs11289.10553-107I4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/cervical%2520cancer%2520cell%2520line%253aME-180.CNhs11289.10553-107I4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/cervical%2520cancer%2520cell%2520line%253aME-180.CNhs11289.10553-107I4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/cervical%2520cancer%2520cell%2520line%253aME-180.CNhs11289.10553-107I4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/cervical%2520cancer%2520cell%2520line%253aME-180.CNhs11289.10553-107I4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10553-107I4 | |id=FF:10553-107I4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0101967 | ||
|is_obsolete= | |||
|library_id=CNhs11289 | |||
|library_id_phase_based=2:CNhs11289 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10553 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10553 | |||
|name=cervical cancer cell line:ME-180 | |name=cervical cancer cell line:ME-180 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11289,LSID759,release008,COMPLETED | |profile_hcage=CNhs11289,LSID759,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0.106818754934198,0.028342632705902,0.0284402080411661,0,0,0,-0.160318030086386,0.056685265411804,-0.27483329820609,-0.282403560576942,0,0,0,0.100571469395166,0,0,0,0,0.056685265411804,0,0.427012757719399,0,0,-0.00156371627181381,0,0,0,0,0,-0.0412726308562535,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.242148831684648,0,0,0,0,0,0,0,0,0.00412761159306765,0,0,0,0,0,0,0,-0.0969923612426051,0,0,0.228046810388857,0,0,0,0,0,0,0,0,0.056685265411804,0,0,0,0,0,0,0,0,0.0608973251846765,0.028342632705902,0,0,0,0,0,-0.0918051196538454,0,0,0,0.115490987134782,-0.0346420703987768,0.028342632705902,0,0.028342632705902,0.427012757719399,0.0944470682572977,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.000132384174958908,0.056685265411804,0,0,-0.11049720076405,-0.209747308699454,0.056685265411804,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.0944470682572977,0,0.427012757719399,0.192482419495004,0.056685265411804,0,0,0,0.151759294076614,0,0,0,0.0782115623163898,0,0.135222377000729,0.72650769459215,0,0,0.143421366985041,0,0.056685265411804,0,0,0,0,0,0.056685265411804,0,0.135881107870666,0,-0.0504125515893149,0,0,0,0,0.053409377467099,0.547900122486102,0,0.03924831771019,0.540964334675369,0,0,0,0,-0.0261097027600142,0,-0.0641942183819366,-0.0260349029116133,0,0.396210743889918,0.0848156413946652,0,0,0,-0.0381464752369865,0.584100494994961,0,0,-0.121779851751874,-0.0664935064052405,0,0,-0.391044581551635,0,-0.121829356292425,-0.0842060287411735,0,0.0350730520678206,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,0.251475815905919,0,0.37916721832529,0.84480143995619,0,0.0500443528625147,0,0,-0.373286155956567,0.0557584611170934,0.0200534152906877,-0.259081814266829,0,0.167716683729073,0.00135130916354917,0.0046109319119855,0.206642333640719,-0.147401849371139,0.105797794103769,0,-0.374713093472667,-0.729587363702208,0.0223895813682413,-0.0918051196538454,-0.0144133715563866,-0.804395750567705,0.32844213613441,0,0,0,0.444295839206668,0,0.175881365754038,0.363257638907735,0.102670754415912,-0.078951252250242,0.343196814445841,-0.002567367393783,-0.165763905051879,-0.0395325284566706,-0.193435478073364,0,-0.253306835281182,0,0.106818754934198,0.0959012428913708,0.0412091697089505,0.327711821360016,0.132438124843882,0,0.0436786831515357,0.124138158417636,0,0.0247046104165465,-0.175250226112098,0,0,-0.0511210859088956,0,0.151759294076614,0.106818754934198,0,0.056685265411804,-0.0897344041660406,-0.01183599806765,0.0629239520980715,0,0.100081275558418,0.0988938613776975,-0.0161961053397735,0,-0.0544571373842364,0.0464725220376099,0.0243703824853722,0.00204448199963569,0.0146762275310954,0.144618116597873,-0.226555458209127,0.192107811183161,-0.0692841407975537,0.171265397499012,-0.106525631100685,0.0505620567179366,0.115490987134782,-0.243678853170539,0.0113443724280753,-0.0314415670634837,0.00522259849788209,-0.776725995584183,0.357891941580497,-0.00710139678590305,-0.249655147539947,0,-0.213935442576558,0,-0.135605927376551,0.000303026602819022,-0.285805859562286,0.162280068339161,0.275267728977365,0.175218989295305,0,-0.206482982111737,0.0390039026366903,0,0.160329770857558,0,0.808718997901866,-0.150367083334639,-0.00715747485083196,0.0269244379746948,-0.0631098096408877,0,-0.26242401342714,0,0,0.0779448473719045,-0.00576381345355118,0.056685265411804,0.0184087696203358,0.0935109055990052,0.0608973251846765,-0.0592858080231301,0,0,0.263353232098191,0,0,0.163436783480054,-0.0997206949401942,0.106302650134939,0.398493582631468,-0.18235332688494,-0.108622809454255,0,0,0.201639452360115,0,-0.507071153882275,0,0,0.135592119441123,-0.116628112990133,0,0,0,0,0,0,0,0,0,0,0,0.067367757994184,-0.203074036139834,0.056685265411804,0.0306485764528281,0,0,0,0,0.056685265411804,0,0,0,0.536610788003243,-0.0595002349559937,-0.0161986607422227,0.053409377467099,0,0,0,0.37843686855111,0.12215387550723,0.106818754934198,0.132138268325599,0.264000974823231,0.114856112155419,0,0,-0.0861409897892114,0,0,0.028342632705902,0,-0.00104519164186001,-0.0962545289640083,0,0,0,-0.27695440160179,0,0,0,0,-0.136071383957436,0,0,-0.309810160460746,0,0.127235963051062,0.367511991223735,0,-0.151801547663507,0.188078209881643,0.434787531524853,0,0,-0.15452837685569,0,0,-0.357932359653025,0,0,0,0,0,0,0,0.056685265411804,0,-0.0218320929047515,0,0,0,0,0,0,0,0,0,0,0,0.279592004381457,0.137488167652327,0.192482419495004,0,0,0,0,0,0,0.199663380786212,0.141796737823816,0,0,0,0,0,0.056685265411804,0,0,0.0378814337681896,0,0,0,0,0,-0.0969923612426051,0,0.151759294076614,0,0.056685265411804,-0.564807121153884,0,0,-0.0848797126985099,0,0,0,0,0,0,0,0,0,0.106818754934198,0,0,0,0.0284402080411661,-0.384794501481504,0,0,0,0,0,0.056685265411804,0,-0.27483329820609,0,0,0,0,0.078598045786027,0,0,0,0.220594052812798,0,-0.160318030086386,0,0,0,0,0,0.0108593475606107,0.114856112155419,0.028342632705902,0,0,0,0,0,0.192482419495004,0,0,0,0,0,0,0,-0.0819615359438948,0,0,0.00661477761313822,0,0,0.099928330556944,0,0,0,0,0,0,0.234122832172425,0,0,0,0,0,0,0,0.124583842453404,0,0,0,0,0,0,0,0,0,0,0.056685265411804,0,0,0,0,0,0,0.0185513336620104,0,0,0,0,0,0,0,-0.0412726308562535,0.151759294076614,0,0.119064512102395,0,0,0,0,0.014646090361286,0,-0.014559685809531,0.308272282370702,0.0283844148482181,0,0,0,0.027366437690546,0,0,0,0,-0.0100921220070973,0,0,0,0,0,0,0,0,0.490149044282553,0,0,0,0,0,0.056685265411804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00156371627181381,0,0,0,0,0,0,0,0,0,0,0,0,0.132000487411615,0,0,0,0,0,0,0,0,0,0,0,0,0.056685265411804,0,0.229712224310838,0.056685265411804,0,0,0,0,0,0,0.0193980141916823,0.056685265411804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.050914745166187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.298610112016197,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0276913668182231,0,0,0.229712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| |||
|rna_box=107 | |rna_box=107 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=53.6088 | |rna_weight_ug=53.6088 | ||
|sample_age=66 | |sample_age=66 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB2106 | |sample_cell_catalog=RCB2106 | ||
|sample_cell_line=ME-180 | |sample_cell_line=ME-180 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.0367552771689e-259!GO:0043226;organelle;2.67220812384643e-208!GO:0043229;intracellular organelle;1.23409302238831e-207!GO:0043231;intracellular membrane-bound organelle;1.46863581538342e-185!GO:0043227;membrane-bound organelle;1.92244119566195e-185!GO:0005737;cytoplasm;1.91841188862047e-175!GO:0044422;organelle part;1.74976193610801e-145!GO:0044446;intracellular organelle part;5.32831514193341e-144!GO:0044444;cytoplasmic part;6.97435778346528e-113!GO:0032991;macromolecular complex;5.42377239352619e-95!GO:0044238;primary metabolic process;2.39952100281484e-86!GO:0044237;cellular metabolic process;9.6904999220642e-86!GO:0005634;nucleus;4.24869189976458e-83!GO:0043170;macromolecule metabolic process;5.18179423340848e-80!GO:0030529;ribonucleoprotein complex;3.16397218385147e-75!GO:0005515;protein binding;1.85147928446182e-71!GO:0044428;nuclear part;4.0178289955399e-69!GO:0003723;RNA binding;8.22080854950897e-65!GO:0043233;organelle lumen;2.43183386180271e-64!GO:0031974;membrane-enclosed lumen;2.43183386180271e-64!GO:0005739;mitochondrion;4.55962698491899e-58!GO:0043228;non-membrane-bound organelle;3.33386359100247e-51!GO:0043232;intracellular non-membrane-bound organelle;3.33386359100247e-51!GO:0043234;protein complex;9.04861055755733e-50!GO:0043283;biopolymer metabolic process;3.83926525732469e-49!GO:0005840;ribosome;6.36145541406507e-47!GO:0016043;cellular component organization and biogenesis;9.65740413335527e-47!GO:0019538;protein metabolic process;1.34669854439755e-45!GO:0006412;translation;4.0905638689437e-44!GO:0031090;organelle membrane;1.2658004742373e-43!GO:0010467;gene expression;1.56129123382771e-43!GO:0006396;RNA processing;4.41794103698022e-42!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.71110137887782e-41!GO:0003735;structural constituent of ribosome;2.29330767238274e-41!GO:0033036;macromolecule localization;3.75950762681993e-41!GO:0044267;cellular protein metabolic process;7.22042352627924e-41!GO:0031981;nuclear lumen;4.15175027515817e-40!GO:0015031;protein transport;8.68754559511583e-40!GO:0044260;cellular macromolecule metabolic process;1.00010670866724e-39!GO:0044429;mitochondrial part;8.86394911879802e-39!GO:0005829;cytosol;8.86394911879802e-39!GO:0008104;protein localization;2.22317861496269e-37!GO:0045184;establishment of protein localization;1.17978402875716e-36!GO:0031967;organelle envelope;7.29413136322714e-36!GO:0033279;ribosomal subunit;8.50879780049168e-36!GO:0031975;envelope;1.28570565531729e-35!GO:0016071;mRNA metabolic process;5.45389927104342e-35!GO:0044249;cellular biosynthetic process;1.07346525995542e-34!GO:0009058;biosynthetic process;1.88409414642802e-33!GO:0046907;intracellular transport;2.81667905497927e-32!GO:0065003;macromolecular complex assembly;6.37212405169112e-32!GO:0006996;organelle organization and biogenesis;1.11549148579923e-31!GO:0008380;RNA splicing;2.92870044629962e-31!GO:0006259;DNA metabolic process;4.5161605330057e-31!GO:0009059;macromolecule biosynthetic process;2.35313034473895e-30!GO:0006397;mRNA processing;2.39004654736953e-30!GO:0022607;cellular component assembly;1.16720301590126e-29!GO:0006886;intracellular protein transport;1.91499363576248e-26!GO:0005654;nucleoplasm;2.38197698339687e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.34668128785288e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.47556559337958e-25!GO:0003676;nucleic acid binding;1.60130206143014e-25!GO:0007049;cell cycle;4.27275052447613e-25!GO:0005740;mitochondrial envelope;2.49056690054792e-24!GO:0031966;mitochondrial membrane;1.89215938042486e-23!GO:0005681;spliceosome;4.54155975273305e-23!GO:0000166;nucleotide binding;4.56961675224037e-23!GO:0019866;organelle inner membrane;7.41667710768254e-23!GO:0051641;cellular localization;6.48471127404882e-22!GO:0044445;cytosolic part;1.06139467422609e-21!GO:0051649;establishment of cellular localization;1.43577258909557e-21!GO:0016070;RNA metabolic process;1.49185905354601e-21!GO:0044451;nucleoplasm part;2.45392199302165e-21!GO:0005743;mitochondrial inner membrane;5.16596278330467e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.09141579658995e-20!GO:0016462;pyrophosphatase activity;1.25260838677987e-20!GO:0006119;oxidative phosphorylation;1.47389741632977e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;1.57876306610963e-20!GO:0017111;nucleoside-triphosphatase activity;6.15382715352456e-20!GO:0016874;ligase activity;6.39925789296178e-19!GO:0044455;mitochondrial membrane part;1.16029293479913e-18!GO:0012505;endomembrane system;1.5235839660469e-18!GO:0015934;large ribosomal subunit;1.53307975218143e-18!GO:0015935;small ribosomal subunit;5.90160058937246e-18!GO:0031980;mitochondrial lumen;6.55980455996462e-18!GO:0005759;mitochondrial matrix;6.55980455996462e-18!GO:0006512;ubiquitin cycle;9.72234052784512e-18!GO:0022402;cell cycle process;1.58232027954052e-17!GO:0008134;transcription factor binding;3.9141578673816e-17!GO:0005694;chromosome;4.65286812256548e-17!GO:0006974;response to DNA damage stimulus;5.65642634094271e-17!GO:0048770;pigment granule;6.49939728707347e-17!GO:0042470;melanosome;6.49939728707347e-17!GO:0000502;proteasome complex (sensu Eukaryota);1.3492296329722e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;2.70385175569568e-16!GO:0022618;protein-RNA complex assembly;3.44032606698382e-16!GO:0006366;transcription from RNA polymerase II promoter;3.5726714577816e-16!GO:0006511;ubiquitin-dependent protein catabolic process;4.70249769727387e-16!GO:0019941;modification-dependent protein catabolic process;4.89255641337149e-16!GO:0043632;modification-dependent macromolecule catabolic process;4.89255641337149e-16!GO:0032553;ribonucleotide binding;6.71244777820488e-16!GO:0032555;purine ribonucleotide binding;6.71244777820488e-16!GO:0044257;cellular protein catabolic process;7.85443011169499e-16!GO:0044265;cellular macromolecule catabolic process;1.03842284173751e-15!GO:0005746;mitochondrial respiratory chain;1.10274970412598e-15!GO:0017076;purine nucleotide binding;1.1297494889538e-15!GO:0006457;protein folding;2.07356941258589e-15!GO:0005783;endoplasmic reticulum;2.19656892707768e-15!GO:0005730;nucleolus;6.71227486461159e-15!GO:0044427;chromosomal part;7.353942946518e-15!GO:0043285;biopolymer catabolic process;1.06080487052343e-14!GO:0008135;translation factor activity, nucleic acid binding;1.23176260773482e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.22314726364068e-14!GO:0006281;DNA repair;3.84628765270243e-14!GO:0050136;NADH dehydrogenase (quinone) activity;6.80966152460787e-14!GO:0003954;NADH dehydrogenase activity;6.80966152460787e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.80966152460787e-14!GO:0005761;mitochondrial ribosome;7.13975091472093e-14!GO:0000313;organellar ribosome;7.13975091472093e-14!GO:0051276;chromosome organization and biogenesis;1.05805676765691e-13!GO:0051082;unfolded protein binding;1.13488984731966e-13!GO:0005794;Golgi apparatus;1.89974200153292e-13!GO:0006605;protein targeting;2.70602800817681e-13!GO:0030163;protein catabolic process;2.99923775491928e-13!GO:0043412;biopolymer modification;2.99923775491928e-13!GO:0009057;macromolecule catabolic process;3.21140941774989e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.28554867747105e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.10319679148416e-13!GO:0000278;mitotic cell cycle;6.2443338192512e-13!GO:0005524;ATP binding;7.6309793284043e-13!GO:0032559;adenyl ribonucleotide binding;9.72600685196492e-13!GO:0030554;adenyl nucleotide binding;2.34946648662802e-12!GO:0044248;cellular catabolic process;2.58100302144608e-12!GO:0044432;endoplasmic reticulum part;2.66808780301447e-12!GO:0042775;organelle ATP synthesis coupled electron transport;4.39685959093968e-12!GO:0042773;ATP synthesis coupled electron transport;4.39685959093968e-12!GO:0016192;vesicle-mediated transport;5.13360382740064e-12!GO:0009719;response to endogenous stimulus;5.67773496653737e-12!GO:0005635;nuclear envelope;6.28677928213791e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;6.81246409123276e-12!GO:0030964;NADH dehydrogenase complex (quinone);6.9099925329319e-12!GO:0045271;respiratory chain complex I;6.9099925329319e-12!GO:0005747;mitochondrial respiratory chain complex I;6.9099925329319e-12!GO:0006464;protein modification process;1.141073665375e-11!GO:0006260;DNA replication;1.21590262496754e-11!GO:0016887;ATPase activity;1.31922581682168e-11!GO:0051186;cofactor metabolic process;1.36668690853036e-11!GO:0000074;regulation of progression through cell cycle;1.38044013418826e-11!GO:0051726;regulation of cell cycle;1.42812311766743e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.88890753440861e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.2189644565523e-11!GO:0006323;DNA packaging;2.44018763173649e-11!GO:0043687;post-translational protein modification;2.57780657835315e-11!GO:0048193;Golgi vesicle transport;3.57567396236429e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;4.03325363577775e-11!GO:0000375;RNA splicing, via transesterification reactions;4.03325363577775e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.03325363577775e-11!GO:0012501;programmed cell death;5.80825193683572e-11!GO:0006915;apoptosis;7.36272842684219e-11!GO:0003743;translation initiation factor activity;7.72852872452844e-11!GO:0044453;nuclear membrane part;7.82374625660511e-11!GO:0042623;ATPase activity, coupled;1.18862884037561e-10!GO:0031965;nuclear membrane;1.24672194400067e-10!GO:0003712;transcription cofactor activity;1.30604141194586e-10!GO:0042254;ribosome biogenesis and assembly;1.49245578343177e-10!GO:0006413;translational initiation;2.04837971290664e-10!GO:0006913;nucleocytoplasmic transport;3.18030277677904e-10!GO:0016604;nuclear body;3.32646776390223e-10!GO:0006461;protein complex assembly;3.73918196266153e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.32089638035084e-10!GO:0008219;cell death;4.80947216879043e-10!GO:0016265;death;4.80947216879043e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.76978059478034e-10!GO:0051169;nuclear transport;6.82063600547645e-10!GO:0006732;coenzyme metabolic process;7.54078617197918e-10!GO:0050794;regulation of cellular process;7.64346279397367e-10!GO:0005768;endosome;8.66622616596675e-10!GO:0000785;chromatin;9.03103251809753e-10!GO:0048523;negative regulation of cellular process;1.28398604306673e-09!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.33108600892858e-09!GO:0008639;small protein conjugating enzyme activity;1.34149597910226e-09!GO:0005789;endoplasmic reticulum membrane;1.44002937662688e-09!GO:0006446;regulation of translational initiation;1.4928141260349e-09!GO:0051301;cell division;1.81904125688314e-09!GO:0004386;helicase activity;1.91564743823107e-09!GO:0005643;nuclear pore;2.25685833168087e-09!GO:0022403;cell cycle phase;2.28396030501988e-09!GO:0004842;ubiquitin-protein ligase activity;2.38025640063716e-09!GO:0019787;small conjugating protein ligase activity;2.4424583468154e-09!GO:0050657;nucleic acid transport;3.50761943858924e-09!GO:0051236;establishment of RNA localization;3.50761943858924e-09!GO:0050658;RNA transport;3.50761943858924e-09!GO:0006403;RNA localization;3.93942954379536e-09!GO:0009055;electron carrier activity;4.1349591140666e-09!GO:0008565;protein transporter activity;5.0281183514365e-09!GO:0007067;mitosis;5.84094619316832e-09!GO:0016607;nuclear speck;5.89730688958664e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.06240952757187e-09!GO:0000087;M phase of mitotic cell cycle;6.32257006417505e-09!GO:0006333;chromatin assembly or disassembly;7.01820328557542e-09!GO:0032446;protein modification by small protein conjugation;7.59014519896689e-09!GO:0016567;protein ubiquitination;8.94704046455542e-09!GO:0065004;protein-DNA complex assembly;9.40663971736503e-09!GO:0048475;coated membrane;1.30771779132378e-08!GO:0030117;membrane coat;1.30771779132378e-08!GO:0048519;negative regulation of biological process;1.30971833030739e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.31480265044525e-08!GO:0031324;negative regulation of cellular metabolic process;1.98982827751238e-08!GO:0065002;intracellular protein transport across a membrane;2.00101613563627e-08!GO:0016881;acid-amino acid ligase activity;2.41614169993893e-08!GO:0043566;structure-specific DNA binding;2.61117733019755e-08!GO:0009060;aerobic respiration;4.1619409767629e-08!GO:0015986;ATP synthesis coupled proton transport;9.85028274307405e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.85028274307405e-08!GO:0045333;cellular respiration;1.1225723252786e-07!GO:0051188;cofactor biosynthetic process;1.19137567733253e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.31154585367291e-07!GO:0045786;negative regulation of progression through cell cycle;1.34877877268178e-07!GO:0006399;tRNA metabolic process;1.49638745541197e-07!GO:0008026;ATP-dependent helicase activity;1.85153856735831e-07!GO:0003697;single-stranded DNA binding;1.8835118690822e-07!GO:0000279;M phase;1.92291332145715e-07!GO:0046930;pore complex;2.01653679298455e-07!GO:0051028;mRNA transport;2.17264668411241e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.29278087039895e-07!GO:0009892;negative regulation of metabolic process;2.40716507274743e-07!GO:0009056;catabolic process;2.40716507274743e-07!GO:0016568;chromatin modification;2.55664307488498e-07!GO:0005667;transcription factor complex;2.94286363109625e-07!GO:0030120;vesicle coat;3.16879159912974e-07!GO:0030662;coated vesicle membrane;3.16879159912974e-07!GO:0003924;GTPase activity;3.57340641310492e-07!GO:0009259;ribonucleotide metabolic process;3.82532280913324e-07!GO:0042981;regulation of apoptosis;4.05622631995469e-07!GO:0016787;hydrolase activity;4.46571719208053e-07!GO:0019829;cation-transporting ATPase activity;4.74595248637844e-07!GO:0016564;transcription repressor activity;4.76806366957899e-07!GO:0017038;protein import;4.78493583449521e-07!GO:0043067;regulation of programmed cell death;5.22631518091172e-07!GO:0006163;purine nucleotide metabolic process;5.37823657459658e-07!GO:0005839;proteasome core complex (sensu Eukaryota);5.47756137790869e-07!GO:0019222;regulation of metabolic process;6.20777526380312e-07!GO:0009108;coenzyme biosynthetic process;6.43946052765026e-07!GO:0006364;rRNA processing;6.90637848299884e-07!GO:0015078;hydrogen ion transmembrane transporter activity;7.5745253660386e-07!GO:0016072;rRNA metabolic process;7.9385858793938e-07!GO:0043623;cellular protein complex assembly;8.06710125062887e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.10590872506035e-07!GO:0005856;cytoskeleton;8.9101437986151e-07!GO:0016481;negative regulation of transcription;9.91861861395833e-07!GO:0006099;tricarboxylic acid cycle;9.98917592492224e-07!GO:0046356;acetyl-CoA catabolic process;9.98917592492224e-07!GO:0005793;ER-Golgi intermediate compartment;1.14512160045501e-06!GO:0006754;ATP biosynthetic process;1.3468613421378e-06!GO:0006753;nucleoside phosphate metabolic process;1.3468613421378e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.43210275091285e-06!GO:0007005;mitochondrion organization and biogenesis;1.61149177383678e-06!GO:0046034;ATP metabolic process;1.73160290872525e-06!GO:0006164;purine nucleotide biosynthetic process;1.75844993131411e-06!GO:0016563;transcription activator activity;1.92941029562727e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.42021971147476e-06!GO:0004812;aminoacyl-tRNA ligase activity;2.42021971147476e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.42021971147476e-06!GO:0004298;threonine endopeptidase activity;2.42021971147476e-06!GO:0050789;regulation of biological process;2.65772978923988e-06!GO:0009260;ribonucleotide biosynthetic process;2.74790270410271e-06!GO:0015630;microtubule cytoskeleton;2.80311977489333e-06!GO:0006084;acetyl-CoA metabolic process;2.91361505276065e-06!GO:0051246;regulation of protein metabolic process;3.26850973849173e-06!GO:0009150;purine ribonucleotide metabolic process;3.4507679605332e-06!GO:0043038;amino acid activation;3.70707533656401e-06!GO:0006418;tRNA aminoacylation for protein translation;3.70707533656401e-06!GO:0043039;tRNA aminoacylation;3.70707533656401e-06!GO:0045259;proton-transporting ATP synthase complex;3.74433413078728e-06!GO:0009141;nucleoside triphosphate metabolic process;3.90931595204015e-06!GO:0044431;Golgi apparatus part;4.19023896707099e-06!GO:0000245;spliceosome assembly;5.20077669287728e-06!GO:0009199;ribonucleoside triphosphate metabolic process;5.50032637174778e-06!GO:0031988;membrane-bound vesicle;5.50212426493659e-06!GO:0016469;proton-transporting two-sector ATPase complex;5.73705922950469e-06!GO:0007398;ectoderm development;6.08960095215029e-06!GO:0042802;identical protein binding;6.16199121879224e-06!GO:0006888;ER to Golgi vesicle-mediated transport;6.36720940680539e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.40552321520592e-06!GO:0031497;chromatin assembly;6.40552321520592e-06!GO:0016779;nucleotidyltransferase activity;6.51019886225536e-06!GO:0016023;cytoplasmic membrane-bound vesicle;6.57175857939116e-06!GO:0009142;nucleoside triphosphate biosynthetic process;7.10217139186591e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.10217139186591e-06!GO:0006261;DNA-dependent DNA replication;7.52232104920808e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.00889129627342e-06!GO:0009144;purine nucleoside triphosphate metabolic process;8.00889129627342e-06!GO:0005798;Golgi-associated vesicle;8.71340421177257e-06!GO:0005525;GTP binding;9.91849512673603e-06!GO:0006334;nucleosome assembly;1.01321356212657e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.0652777924309e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.0652777924309e-05!GO:0009152;purine ribonucleotide biosynthetic process;1.12315506303587e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.12709946499142e-05!GO:0000151;ubiquitin ligase complex;1.19053566877636e-05!GO:0008544;epidermis development;1.21330358368749e-05!GO:0051427;hormone receptor binding;1.23818816228019e-05!GO:0045893;positive regulation of transcription, DNA-dependent;1.25841425811366e-05!GO:0006752;group transfer coenzyme metabolic process;1.26533548539441e-05!GO:0009109;coenzyme catabolic process;1.2763113809817e-05!GO:0003713;transcription coactivator activity;1.36329425228721e-05!GO:0005657;replication fork;1.36823365777289e-05!GO:0005770;late endosome;1.48565629027708e-05!GO:0043069;negative regulation of programmed cell death;1.53249926331037e-05!GO:0006916;anti-apoptosis;1.57531593218329e-05!GO:0006613;cotranslational protein targeting to membrane;1.67363388059028e-05!GO:0006793;phosphorus metabolic process;1.71350985588237e-05!GO:0006796;phosphate metabolic process;1.71350985588237e-05!GO:0043066;negative regulation of apoptosis;2.08256495923447e-05!GO:0044440;endosomal part;2.08256495923447e-05!GO:0010008;endosome membrane;2.08256495923447e-05!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.2156097146509e-05!GO:0031982;vesicle;2.55391267032366e-05!GO:0030216;keratinocyte differentiation;2.64977309979833e-05!GO:0035257;nuclear hormone receptor binding;2.6667050633234e-05!GO:0003682;chromatin binding;2.71385932780501e-05!GO:0009117;nucleotide metabolic process;2.7908469475434e-05!GO:0048522;positive regulation of cellular process;2.96622073754524e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.02971577550141e-05!GO:0051187;cofactor catabolic process;3.18912891702378e-05!GO:0005769;early endosome;3.48231009048148e-05!GO:0005762;mitochondrial large ribosomal subunit;3.48231009048148e-05!GO:0000315;organellar large ribosomal subunit;3.48231009048148e-05!GO:0051168;nuclear export;3.49971396244221e-05!GO:0045941;positive regulation of transcription;3.66920597278641e-05!GO:0051170;nuclear import;3.80993361319528e-05!GO:0031410;cytoplasmic vesicle;4.48638874741319e-05!GO:0048471;perinuclear region of cytoplasm;4.50819696723529e-05!GO:0003724;RNA helicase activity;5.20872610280607e-05!GO:0003714;transcription corepressor activity;5.23733027365157e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.58578632473661e-05!GO:0045892;negative regulation of transcription, DNA-dependent;5.66615151462257e-05!GO:0030118;clathrin coat;6.09589933309349e-05!GO:0031323;regulation of cellular metabolic process;6.19226006803259e-05!GO:0032561;guanyl ribonucleotide binding;7.03273130257736e-05!GO:0019001;guanyl nucleotide binding;7.03273130257736e-05!GO:0008654;phospholipid biosynthetic process;8.84749863502494e-05!GO:0006606;protein import into nucleus;0.000101815643762536!GO:0051329;interphase of mitotic cell cycle;0.000103938042224221!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000116003021077146!GO:0003690;double-stranded DNA binding;0.000126150150847285!GO:0046983;protein dimerization activity;0.000128871392369167!GO:0006612;protein targeting to membrane;0.000148179120439556!GO:0005813;centrosome;0.000158755795412481!GO:0007264;small GTPase mediated signal transduction;0.00016646391895728!GO:0000139;Golgi membrane;0.000177859063659825!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000196937698285867!GO:0051325;interphase;0.00022011663639235!GO:0006350;transcription;0.000222316118861634!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000227629331978887!GO:0005819;spindle;0.000235244053186781!GO:0043021;ribonucleoprotein binding;0.000235683054198641!GO:0016044;membrane organization and biogenesis;0.000241757053256168!GO:0051789;response to protein stimulus;0.000248221180943508!GO:0006986;response to unfolded protein;0.000248221180943508!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000260127114425859!GO:0016310;phosphorylation;0.000275879345427871!GO:0000314;organellar small ribosomal subunit;0.000278435571913967!GO:0005763;mitochondrial small ribosomal subunit;0.000278435571913967!GO:0008094;DNA-dependent ATPase activity;0.000314319345506052!GO:0030119;AP-type membrane coat adaptor complex;0.000332975815430105!GO:0000775;chromosome, pericentric region;0.000341764049253844!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00034320378672883!GO:0005773;vacuole;0.0003538830132457!GO:0031252;leading edge;0.000358972345067644!GO:0007010;cytoskeleton organization and biogenesis;0.000367133659406096!GO:0005815;microtubule organizing center;0.000384427121102343!GO:0003702;RNA polymerase II transcription factor activity;0.000408482691479032!GO:0003729;mRNA binding;0.000412605386620596!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000452244312192723!GO:0016197;endosome transport;0.000462781570596749!GO:0007051;spindle organization and biogenesis;0.000472720339683228!GO:0001533;cornified envelope;0.00055718614146621!GO:0030131;clathrin adaptor complex;0.000584693419813178!GO:0003899;DNA-directed RNA polymerase activity;0.000607392544261231!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000676348224837312!GO:0045454;cell redox homeostasis;0.000690383815905553!GO:0065009;regulation of a molecular function;0.000723265943217416!GO:0051252;regulation of RNA metabolic process;0.00074887625124775!GO:0050662;coenzyme binding;0.000755553619843975!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000856819651388017!GO:0010468;regulation of gene expression;0.00087984309677564!GO:0016740;transferase activity;0.000887151630067697!GO:0030663;COPI coated vesicle membrane;0.00092563723617534!GO:0030126;COPI vesicle coat;0.00092563723617534!GO:0005788;endoplasmic reticulum lumen;0.00092878847705181!GO:0008186;RNA-dependent ATPase activity;0.000939836372990668!GO:0051287;NAD binding;0.000974369366917838!GO:0006402;mRNA catabolic process;0.000979309592082321!GO:0008250;oligosaccharyl transferase complex;0.00110660799606952!GO:0006302;double-strand break repair;0.00112915116707095!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00118816461886122!GO:0006352;transcription initiation;0.00122458512253121!GO:0051920;peroxiredoxin activity;0.00133635348390886!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00138348631325637!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00138348631325637!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00138348631325637!GO:0051052;regulation of DNA metabolic process;0.00139483515767469!GO:0043681;protein import into mitochondrion;0.0014195871222983!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0014195871222983!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00148828609571477!GO:0035258;steroid hormone receptor binding;0.00155223960298121!GO:0005885;Arp2/3 protein complex;0.00157934810832999!GO:0003684;damaged DNA binding;0.00159340953646246!GO:0000323;lytic vacuole;0.00165614997308934!GO:0005764;lysosome;0.00165614997308934!GO:0007243;protein kinase cascade;0.00165614997308934!GO:0033116;ER-Golgi intermediate compartment membrane;0.00165614997308934!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00171222959961538!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0017150696676001!GO:0007006;mitochondrial membrane organization and biogenesis;0.00182453508105125!GO:0015631;tubulin binding;0.00187331850641782!GO:0065007;biological regulation;0.00189999417903227!GO:0043488;regulation of mRNA stability;0.00198102654661784!GO:0043487;regulation of RNA stability;0.00198102654661784!GO:0030132;clathrin coat of coated pit;0.00198102654661784!GO:0000776;kinetochore;0.00198106944658383!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00202028689964121!GO:0004576;oligosaccharyl transferase activity;0.00214198590081206!GO:0032774;RNA biosynthetic process;0.00218229878269615!GO:0048500;signal recognition particle;0.00235012709401411!GO:0016491;oxidoreductase activity;0.00236376269610946!GO:0019843;rRNA binding;0.00239315984991179!GO:0006414;translational elongation;0.00240806072505359!GO:0016363;nuclear matrix;0.00241621598324976!GO:0000075;cell cycle checkpoint;0.00247156490052424!GO:0030176;integral to endoplasmic reticulum membrane;0.00256725918279291!GO:0008601;protein phosphatase type 2A regulator activity;0.00260273717927653!GO:0006351;transcription, DNA-dependent;0.00260755896989943!GO:0004004;ATP-dependent RNA helicase activity;0.00260755896989943!GO:0030137;COPI-coated vesicle;0.002651936148826!GO:0005905;coated pit;0.00278118065350127!GO:0016251;general RNA polymerase II transcription factor activity;0.00279429016766954!GO:0030521;androgen receptor signaling pathway;0.00279429016766954!GO:0019899;enzyme binding;0.00314840061808743!GO:0006611;protein export from nucleus;0.00316697921189737!GO:0008312;7S RNA binding;0.00332407067416859!GO:0015980;energy derivation by oxidation of organic compounds;0.00335647129414087!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00346579786883063!GO:0032508;DNA duplex unwinding;0.00348705311295412!GO:0032392;DNA geometric change;0.00348705311295412!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00377142748685322!GO:0015399;primary active transmembrane transporter activity;0.00377142748685322!GO:0018196;peptidyl-asparagine modification;0.0038677381822954!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0038677381822954!GO:0005048;signal sequence binding;0.0038677381822954!GO:0000228;nuclear chromosome;0.00394917729322038!GO:0008287;protein serine/threonine phosphatase complex;0.00398984117067809!GO:0006626;protein targeting to mitochondrion;0.0041858584746237!GO:0008092;cytoskeletal protein binding;0.00426677738229732!GO:0048518;positive regulation of biological process;0.00442508071050393!GO:0003678;DNA helicase activity;0.00442508071050393!GO:0000159;protein phosphatase type 2A complex;0.0045110147194784!GO:0007034;vacuolar transport;0.00456690792540925!GO:0048487;beta-tubulin binding;0.00456988936431252!GO:0003746;translation elongation factor activity;0.0046872845596877!GO:0006405;RNA export from nucleus;0.00485887647537301!GO:0001726;ruffle;0.00487477724966328!GO:0006839;mitochondrial transport;0.0050153767252015!GO:0033673;negative regulation of kinase activity;0.00512106126105516!GO:0006469;negative regulation of protein kinase activity;0.00512106126105516!GO:0050681;androgen receptor binding;0.00512106126105516!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00515779200423524!GO:0006401;RNA catabolic process;0.00546293010126836!GO:0030133;transport vesicle;0.00553103134913075!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00555327815014658!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00555327815014658!GO:0008361;regulation of cell size;0.00556583437166522!GO:0046489;phosphoinositide biosynthetic process;0.00556583437166522!GO:0019867;outer membrane;0.00568963469596162!GO:0000049;tRNA binding;0.00586672498789035!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00587170468635674!GO:0016859;cis-trans isomerase activity;0.00594044813699878!GO:0030518;steroid hormone receptor signaling pathway;0.0059787628242861!GO:0006091;generation of precursor metabolites and energy;0.00615616233980309!GO:0030036;actin cytoskeleton organization and biogenesis;0.00621789311505736!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00621789311505736!GO:0045047;protein targeting to ER;0.00621789311505736!GO:0000786;nucleosome;0.00621789311505736!GO:0009165;nucleotide biosynthetic process;0.0062960392617822!GO:0006891;intra-Golgi vesicle-mediated transport;0.00654350020707685!GO:0048037;cofactor binding;0.00658359640215747!GO:0015992;proton transport;0.00659957575875701!GO:0046474;glycerophospholipid biosynthetic process;0.00668970640283718!GO:0008022;protein C-terminus binding;0.00679648776539703!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.00690732390987897!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00694203036927506!GO:0007052;mitotic spindle organization and biogenesis;0.00696913738922797!GO:0006818;hydrogen transport;0.00697196842850435!GO:0008632;apoptotic program;0.00714956546940899!GO:0006984;ER-nuclear signaling pathway;0.00732516217549496!GO:0031968;organelle outer membrane;0.00747257814649505!GO:0000792;heterochromatin;0.00750724321519785!GO:0051101;regulation of DNA binding;0.00756216605410095!GO:0030057;desmosome;0.00784001974982914!GO:0030658;transport vesicle membrane;0.00799053411593294!GO:0051348;negative regulation of transferase activity;0.00803721259652271!GO:0005637;nuclear inner membrane;0.00858671020594352!GO:0008033;tRNA processing;0.00867448303466141!GO:0030867;rough endoplasmic reticulum membrane;0.00875381190786053!GO:0006268;DNA unwinding during replication;0.00875381190786053!GO:0003711;transcription elongation regulator activity;0.00876400890462778!GO:0046467;membrane lipid biosynthetic process;0.00876400890462778!GO:0016853;isomerase activity;0.00910267153620302!GO:0008139;nuclear localization sequence binding;0.00928785708510466!GO:0051338;regulation of transferase activity;0.00933777610196424!GO:0043022;ribosome binding;0.00933777610196424!GO:0031072;heat shock protein binding;0.00938291653485182!GO:0031124;mRNA 3'-end processing;0.00943483431698089!GO:0022890;inorganic cation transmembrane transporter activity;0.0094501816734142!GO:0009967;positive regulation of signal transduction;0.00948229632587378!GO:0016049;cell growth;0.0103886741961265!GO:0048468;cell development;0.0105115120428205!GO:0005874;microtubule;0.0105849896946!GO:0005684;U2-dependent spliceosome;0.0109334443616179!GO:0005741;mitochondrial outer membrane;0.0110298581124867!GO:0043588;skin development;0.0111643800355306!GO:0006338;chromatin remodeling;0.011201399779195!GO:0031901;early endosome membrane;0.0112215418499551!GO:0004527;exonuclease activity;0.0113734661832904!GO:0044430;cytoskeletal part;0.0114597217623291!GO:0043624;cellular protein complex disassembly;0.0114597217623291!GO:0007017;microtubule-based process;0.011460825874373!GO:0001558;regulation of cell growth;0.0118483551813065!GO:0030125;clathrin vesicle coat;0.0120890104346635!GO:0030665;clathrin coated vesicle membrane;0.0120890104346635!GO:0045449;regulation of transcription;0.0121979539190405!GO:0005869;dynactin complex;0.0121979539190405!GO:0051098;regulation of binding;0.0122797097242927!GO:0007050;cell cycle arrest;0.0123050961486832!GO:0008610;lipid biosynthetic process;0.0123830229710959!GO:0007265;Ras protein signal transduction;0.0133943023346948!GO:0031529;ruffle organization and biogenesis;0.0134344795150687!GO:0007041;lysosomal transport;0.0135448444899301!GO:0008234;cysteine-type peptidase activity;0.0135914607291973!GO:0050790;regulation of catalytic activity;0.0137213514585481!GO:0030032;lamellipodium biogenesis;0.0142061932619098!GO:0043065;positive regulation of apoptosis;0.0144694822206202!GO:0043596;nuclear replication fork;0.0145115312438059!GO:0016584;nucleosome positioning;0.0146860045525035!GO:0005938;cell cortex;0.0152091378703578!GO:0006310;DNA recombination;0.0156175219071082!GO:0006144;purine base metabolic process;0.0156224475799648!GO:0016272;prefoldin complex;0.0159267163428598!GO:0006354;RNA elongation;0.0160099794555324!GO:0006383;transcription from RNA polymerase III promoter;0.0161886420613464!GO:0043549;regulation of kinase activity;0.0162707792968894!GO:0045045;secretory pathway;0.016310779864211!GO:0005832;chaperonin-containing T-complex;0.016331829636317!GO:0051087;chaperone binding;0.0165241953268868!GO:0006376;mRNA splice site selection;0.0168437609191535!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0168437609191535!GO:0043492;ATPase activity, coupled to movement of substances;0.0171918413405318!GO:0009893;positive regulation of metabolic process;0.0172036861684949!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0174148048350724!GO:0004674;protein serine/threonine kinase activity;0.0176682906794569!GO:0030029;actin filament-based process;0.0177952646091174!GO:0043068;positive regulation of programmed cell death;0.0179293197999443!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0182867031988838!GO:0016311;dephosphorylation;0.0182919865861583!GO:0042393;histone binding;0.0184313452687016!GO:0004860;protein kinase inhibitor activity;0.018542203039981!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0190256673881561!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0195515729301525!GO:0030659;cytoplasmic vesicle membrane;0.0202111453834257!GO:0030660;Golgi-associated vesicle membrane;0.0203676303555826!GO:0008180;signalosome;0.0203859702270383!GO:0000339;RNA cap binding;0.0204432091962326!GO:0000059;protein import into nucleus, docking;0.020575973199696!GO:0016791;phosphoric monoester hydrolase activity;0.0206015433732675!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.020756314013391!GO:0015002;heme-copper terminal oxidase activity;0.020756314013391!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.020756314013391!GO:0004129;cytochrome-c oxidase activity;0.020756314013391!GO:0000086;G2/M transition of mitotic cell cycle;0.0213174803073263!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0213174803073263!GO:0035035;histone acetyltransferase binding;0.0216785262314675!GO:0045792;negative regulation of cell size;0.0220774840190698!GO:0032984;macromolecular complex disassembly;0.0221252324540253!GO:0030880;RNA polymerase complex;0.0221333045700328!GO:0008538;proteasome activator activity;0.0221333045700328!GO:0007004;telomere maintenance via telomerase;0.0223024017362309!GO:0008333;endosome to lysosome transport;0.0229664049714444!GO:0051128;regulation of cellular component organization and biogenesis;0.0230550106271956!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0239692937253865!GO:0006672;ceramide metabolic process;0.0255681042089!GO:0050811;GABA receptor binding;0.0256486019316027!GO:0032200;telomere organization and biogenesis;0.0258412578503329!GO:0000723;telomere maintenance;0.0258412578503329!GO:0005669;transcription factor TFIID complex;0.0258412578503329!GO:0006979;response to oxidative stress;0.025990093893377!GO:0030384;phosphoinositide metabolic process;0.0260653621170446!GO:0017166;vinculin binding;0.0265314500245524!GO:0004518;nuclease activity;0.0268095984478414!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.02686951253624!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0272571466870136!GO:0031123;RNA 3'-end processing;0.0283613072696707!GO:0000082;G1/S transition of mitotic cell cycle;0.0284035516966298!GO:0042770;DNA damage response, signal transduction;0.028422559934954!GO:0008637;apoptotic mitochondrial changes;0.0285015193266747!GO:0006289;nucleotide-excision repair;0.0286204663232031!GO:0009112;nucleobase metabolic process;0.0286519038773373!GO:0008017;microtubule binding;0.0288038838327428!GO:0030134;ER to Golgi transport vesicle;0.0297306438061078!GO:0022406;membrane docking;0.029768798600881!GO:0048278;vesicle docking;0.029768798600881!GO:0046966;thyroid hormone receptor binding;0.0299795463092842!GO:0006650;glycerophospholipid metabolic process;0.0303600468844218!GO:0030308;negative regulation of cell growth;0.0303617095889109!GO:0030140;trans-Golgi network transport vesicle;0.0305069223756699!GO:0043241;protein complex disassembly;0.0305186805897303!GO:0005912;adherens junction;0.0307310334320278!GO:0043433;negative regulation of transcription factor activity;0.0308671972161488!GO:0045859;regulation of protein kinase activity;0.0312372829253548!GO:0043601;nuclear replisome;0.0314491973281519!GO:0030894;replisome;0.0314491973281519!GO:0006270;DNA replication initiation;0.0326261060842302!GO:0008097;5S rRNA binding;0.0326645782573384!GO:0030027;lamellipodium;0.0327306871502208!GO:0044452;nucleolar part;0.0327952128736435!GO:0008047;enzyme activator activity;0.0328429733358168!GO:0000209;protein polyubiquitination;0.0328675542535519!GO:0030865;cortical cytoskeleton organization and biogenesis;0.03288085729603!GO:0006506;GPI anchor biosynthetic process;0.0330179429549059!GO:0006643;membrane lipid metabolic process;0.0331604910251332!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0337701759006804!GO:0030235;nitric-oxide synthase regulator activity;0.0339967866125706!GO:0046519;sphingoid metabolic process;0.0342914042061479!GO:0006892;post-Golgi vesicle-mediated transport;0.0344431751391044!GO:0040029;regulation of gene expression, epigenetic;0.0345655596382739!GO:0005784;translocon complex;0.0351997815836382!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0354109230830737!GO:0000428;DNA-directed RNA polymerase complex;0.0354109230830737!GO:0006355;regulation of transcription, DNA-dependent;0.0357560340952001!GO:0045334;clathrin-coated endocytic vesicle;0.0360169295122907!GO:0000790;nuclear chromatin;0.036063445414399!GO:0043403;skeletal muscle regeneration;0.0374470170540924!GO:0005801;cis-Golgi network;0.038335010049164!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0386427740373666!GO:0006378;mRNA polyadenylation;0.0387132160584368!GO:0006950;response to stress;0.0388255996866548!GO:0006275;regulation of DNA replication;0.0388598490648552!GO:0045926;negative regulation of growth;0.0390105064349598!GO:0051540;metal cluster binding;0.0390105064349598!GO:0051536;iron-sulfur cluster binding;0.0390105064349598!GO:0031325;positive regulation of cellular metabolic process;0.0392122962999915!GO:0030522;intracellular receptor-mediated signaling pathway;0.0397233406894881!GO:0040008;regulation of growth;0.0402147111482099!GO:0006497;protein amino acid lipidation;0.0405784512645856!GO:0006904;vesicle docking during exocytosis;0.0407971073405187!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0407971073405187!GO:0010257;NADH dehydrogenase complex assembly;0.0407971073405187!GO:0033108;mitochondrial respiratory chain complex assembly;0.0407971073405187!GO:0006417;regulation of translation;0.0410303904825887!GO:0008426;protein kinase C inhibitor activity;0.0414234119157112!GO:0031902;late endosome membrane;0.0417722629667008!GO:0030433;ER-associated protein catabolic process;0.042148666554711!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.042148666554711!GO:0006505;GPI anchor metabolic process;0.0422318774344299!GO:0004721;phosphoprotein phosphatase activity;0.0422632002732689!GO:0008408;3'-5' exonuclease activity;0.0426140254382884!GO:0044433;cytoplasmic vesicle part;0.0433624639030939!GO:0044454;nuclear chromosome part;0.0434410205746818!GO:0000096;sulfur amino acid metabolic process;0.0438083591947295!GO:0046822;regulation of nucleocytoplasmic transport;0.0438083591947295!GO:0007059;chromosome segregation;0.0453980506168813!GO:0012506;vesicle membrane;0.0458656344461941!GO:0043414;biopolymer methylation;0.0458656344461941!GO:0000781;chromosome, telomeric region;0.0460833317887575!GO:0007242;intracellular signaling cascade;0.0465946920460983!GO:0006595;polyamine metabolic process;0.0469050795693585!GO:0005720;nuclear heterochromatin;0.0472644097910444!GO:0000178;exosome (RNase complex);0.0477955145789984!GO:0046982;protein heterodimerization activity;0.0480608586604226!GO:0000805;X chromosome;0.0480608586604226!GO:0001740;Barr body;0.0480608586604226!GO:0005200;structural constituent of cytoskeleton;0.0480608586604226!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0481607283564232!GO:0007266;Rho protein signal transduction;0.0487718071593324!GO:0006897;endocytosis;0.0487718071593324!GO:0010324;membrane invagination;0.0487718071593324!GO:0004300;enoyl-CoA hydratase activity;0.0488647665828857!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0488952895222247!GO:0004448;isocitrate dehydrogenase activity;0.0493356731500424!GO:0005791;rough endoplasmic reticulum;0.049430854169755!GO:0019752;carboxylic acid metabolic process;0.049430854169755!GO:0046483;heterocycle metabolic process;0.0497204406834072 | |||
|sample_id=10553 | |sample_id=10553 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=cervix | |sample_tissue=cervix | ||
|top_motifs=VSX1,2:2.84221101066;ZEB1:2.35880127654;TP53:2.35365917096;SNAI1..3:2.12188349556;FOXQ1:2.095845987;TBX4,5:2.00090094834;RBPJ:1.87405357493;NANOG:1.86637988822;PDX1:1.71635975708;FOXN1:1.63878702793;NKX2-1,4:1.57603927254;MYOD1:1.56363880008;TBP:1.55473303948;ADNP_IRX_SIX_ZHX:1.47997413472;ZNF148:1.42692526282;NKX2-3_NKX2-5:1.39870942617;ATF4:1.34101411585;TEF:1.31390731149;TFAP2{A,C}:1.25961153285;FOXM1:1.25931867685;ARID5B:1.18981364479;HOX{A4,D4}:1.18599564387;CDC5L:1.17619537822;NR6A1:1.17272236461;ONECUT1,2:1.13491747219;TFDP1:1.02777553589;SP1:0.978544036507;NKX6-1,2:0.972708765499;XCPE1{core}:0.961885330042;T:0.959346932738;E2F1..5:0.922178282121;LHX3,4:0.914949063303;TFCP2:0.907558938103;FOXL1:0.888433116828;NFY{A,B,C}:0.881286193852;LMO2:0.87529969995;ZNF423:0.870698129786;CRX:0.749783472512;GFI1B:0.722468217272;HOX{A6,A7,B6,B7}:0.719670952931;FOS_FOS{B,L1}_JUN{B,D}:0.697305092216;FOXP1:0.675649471364;ELK1,4_GABP{A,B1}:0.666133649829;GTF2A1,2:0.665157194626;ATF5_CREB3:0.646275189173;POU1F1:0.626090979699;FOXO1,3,4:0.625959773891;TEAD1:0.592096974281;HAND1,2:0.585157157339;ATF2:0.542060562191;CEBPA,B_DDIT3:0.49123974551;EGR1..3:0.475590083187;MED-1{core}:0.455070656732;NR5A1,2:0.43076794254;POU6F1:0.409220634779;bHLH_family:0.392319788612;JUN:0.386440394563;ZIC1..3:0.379810597377;SOX2:0.370637506739;LEF1_TCF7_TCF7L1,2:0.335550763342;CDX1,2,4:0.320369089559;IKZF1:0.319023874644;IRF7:0.314326001668;TAL1_TCF{3,4,12}:0.3100926026;EBF1:0.279637599243;PITX1..3:0.263423892414;GZF1:0.260561675202;PAX2:0.252860992984;FOX{I1,J2}:0.251880226804;HSF1,2:0.234511264157;MTE{core}:0.233980256176;HMX1:0.180069285581;NFE2:0.174061281177;BREu{core}:0.159812502473;HLF:0.152642210817;PAX4:0.146082615672;HIC1:0.145083850794;FOSL2:0.137449185171;MAZ:0.135090333087;SOX5:0.130411508592;ZNF143:0.129155361197;FOX{F1,F2,J1}:0.127259788757;FOX{D1,D2}:0.127137504186;ZBTB16:0.124482075664;NRF1:0.123299882304;NFIX:0.121648564483;PPARG:0.104333136155;NFIL3:0.0976861189363;AR:0.09517922852;OCT4_SOX2{dimer}:0.0847402058378;EN1,2:0.0840595318952;POU2F1..3:0.0674352550374;YY1:0.0601292325323;TOPORS:0.041992573321;ZNF384:0.0253965759474;FOXD3:0.0193685989956;POU5F1:0.0122872997047;ESR1:-0.00127173071768;ELF1,2,4:-0.0125973917744;PRRX1,2:-0.020973493354;SRF:-0.023013073071;BACH2:-0.036495946898;TGIF1:-0.0423473391047;ZBTB6:-0.0424942066085;BPTF:-0.0500163440394;PAX5:-0.0510988791847;GLI1..3:-0.0523182819862;MYBL2:-0.0550321561419;TFAP2B:-0.060718072347;GFI1:-0.0820308743676;TLX1..3_NFIC{dimer}:-0.0822409018827;RFX2..5_RFXANK_RFXAP:-0.0835660056157;SOX{8,9,10}:-0.0840498585033;ZFP161:-0.0886290723693;MEF2{A,B,C,D}:-0.090487578381;HNF1A:-0.0922289398448;PAX6:-0.13282444523;MAFB:-0.141689774568;CREB1:-0.161605554946;PBX1:-0.162681583455;HOXA9_MEIS1:-0.168733623044;RORA:-0.186932284435;REST:-0.193179248394;GTF2I:-0.205050122402;SOX17:-0.248620351662;KLF4:-0.25037074395;RFX1:-0.255718685553;FOXP3:-0.257337848868;NFE2L2:-0.275219603045;HBP1_HMGB_SSRP1_UBTF:-0.284941040257;TLX2:-0.286111257757;GCM1,2:-0.28880456167;PAX1,9:-0.295253636965;AIRE:-0.299506439577;HOX{A5,B5}:-0.300072726314;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.346850856036;ZNF238:-0.356715865411;HNF4A_NR2F1,2:-0.372935130142;NFKB1_REL_RELA:-0.376704720799;MTF1:-0.388881417981;MYB:-0.392296627225;CUX2:-0.414186330362;EP300:-0.42608488492;IRF1,2:-0.431153367257;IKZF2:-0.460328581273;GATA6:-0.465590270546;PAX8:-0.484852965398;RREB1:-0.492261149124;MYFfamily:-0.498282022238;UFEwm:-0.517810223687;SMAD1..7,9:-0.520210524293;STAT5{A,B}:-0.534527832247;NR1H4:-0.548822157006;DBP:-0.55270968267;SPIB:-0.553618124073;SREBF1,2:-0.556651852502;NHLH1,2:-0.559133466845;NKX3-2:-0.592492063861;STAT1,3:-0.593575402149;ETS1,2:-0.620701452086;FOXA2:-0.622681707259;ESRRA:-0.633750403464;NKX2-2,8:-0.639208037701;HIF1A:-0.659955271272;AHR_ARNT_ARNT2:-0.665618440135;DMAP1_NCOR{1,2}_SMARC:-0.682456301795;EVI1:-0.712635068837;SPI1:-0.722775138853;NKX3-1:-0.727389812227;STAT2,4,6:-0.755660943737;NFE2L1:-0.78710620186;ALX4:-0.815312176092;RUNX1..3:-0.862152602661;PATZ1:-0.877870053377;RXR{A,B,G}:-0.884258211947;MZF1:-0.897708690076;PRDM1:-0.943915487563;GATA4:-0.964369976508;RXRA_VDR{dimer}:-0.968070452311;HES1:-0.978838138468;HMGA1,2:-0.982336720345;ALX1:-1.00856179343;ATF6:-1.08585154409;NR3C1:-1.15680050765;NFATC1..3:-1.22525546834;TFAP4:-1.26328974371;PAX3,7:-1.28084184954;XBP1:-1.32629854076;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.59801895605;POU3F1..4:-1.76825341356;NANOG{mouse}:-1.85752661982;SPZ1:-2.15875843252 | |top_motifs=VSX1,2:2.84221101066;ZEB1:2.35880127654;TP53:2.35365917096;SNAI1..3:2.12188349556;FOXQ1:2.095845987;TBX4,5:2.00090094834;RBPJ:1.87405357493;NANOG:1.86637988822;PDX1:1.71635975708;FOXN1:1.63878702793;NKX2-1,4:1.57603927254;MYOD1:1.56363880008;TBP:1.55473303948;ADNP_IRX_SIX_ZHX:1.47997413472;ZNF148:1.42692526282;NKX2-3_NKX2-5:1.39870942617;ATF4:1.34101411585;TEF:1.31390731149;TFAP2{A,C}:1.25961153285;FOXM1:1.25931867685;ARID5B:1.18981364479;HOX{A4,D4}:1.18599564387;CDC5L:1.17619537822;NR6A1:1.17272236461;ONECUT1,2:1.13491747219;TFDP1:1.02777553589;SP1:0.978544036507;NKX6-1,2:0.972708765499;XCPE1{core}:0.961885330042;T:0.959346932738;E2F1..5:0.922178282121;LHX3,4:0.914949063303;TFCP2:0.907558938103;FOXL1:0.888433116828;NFY{A,B,C}:0.881286193852;LMO2:0.87529969995;ZNF423:0.870698129786;CRX:0.749783472512;GFI1B:0.722468217272;HOX{A6,A7,B6,B7}:0.719670952931;FOS_FOS{B,L1}_JUN{B,D}:0.697305092216;FOXP1:0.675649471364;ELK1,4_GABP{A,B1}:0.666133649829;GTF2A1,2:0.665157194626;ATF5_CREB3:0.646275189173;POU1F1:0.626090979699;FOXO1,3,4:0.625959773891;TEAD1:0.592096974281;HAND1,2:0.585157157339;ATF2:0.542060562191;CEBPA,B_DDIT3:0.49123974551;EGR1..3:0.475590083187;MED-1{core}:0.455070656732;NR5A1,2:0.43076794254;POU6F1:0.409220634779;bHLH_family:0.392319788612;JUN:0.386440394563;ZIC1..3:0.379810597377;SOX2:0.370637506739;LEF1_TCF7_TCF7L1,2:0.335550763342;CDX1,2,4:0.320369089559;IKZF1:0.319023874644;IRF7:0.314326001668;TAL1_TCF{3,4,12}:0.3100926026;EBF1:0.279637599243;PITX1..3:0.263423892414;GZF1:0.260561675202;PAX2:0.252860992984;FOX{I1,J2}:0.251880226804;HSF1,2:0.234511264157;MTE{core}:0.233980256176;HMX1:0.180069285581;NFE2:0.174061281177;BREu{core}:0.159812502473;HLF:0.152642210817;PAX4:0.146082615672;HIC1:0.145083850794;FOSL2:0.137449185171;MAZ:0.135090333087;SOX5:0.130411508592;ZNF143:0.129155361197;FOX{F1,F2,J1}:0.127259788757;FOX{D1,D2}:0.127137504186;ZBTB16:0.124482075664;NRF1:0.123299882304;NFIX:0.121648564483;PPARG:0.104333136155;NFIL3:0.0976861189363;AR:0.09517922852;OCT4_SOX2{dimer}:0.0847402058378;EN1,2:0.0840595318952;POU2F1..3:0.0674352550374;YY1:0.0601292325323;TOPORS:0.041992573321;ZNF384:0.0253965759474;FOXD3:0.0193685989956;POU5F1:0.0122872997047;ESR1:-0.00127173071768;ELF1,2,4:-0.0125973917744;PRRX1,2:-0.020973493354;SRF:-0.023013073071;BACH2:-0.036495946898;TGIF1:-0.0423473391047;ZBTB6:-0.0424942066085;BPTF:-0.0500163440394;PAX5:-0.0510988791847;GLI1..3:-0.0523182819862;MYBL2:-0.0550321561419;TFAP2B:-0.060718072347;GFI1:-0.0820308743676;TLX1..3_NFIC{dimer}:-0.0822409018827;RFX2..5_RFXANK_RFXAP:-0.0835660056157;SOX{8,9,10}:-0.0840498585033;ZFP161:-0.0886290723693;MEF2{A,B,C,D}:-0.090487578381;HNF1A:-0.0922289398448;PAX6:-0.13282444523;MAFB:-0.141689774568;CREB1:-0.161605554946;PBX1:-0.162681583455;HOXA9_MEIS1:-0.168733623044;RORA:-0.186932284435;REST:-0.193179248394;GTF2I:-0.205050122402;SOX17:-0.248620351662;KLF4:-0.25037074395;RFX1:-0.255718685553;FOXP3:-0.257337848868;NFE2L2:-0.275219603045;HBP1_HMGB_SSRP1_UBTF:-0.284941040257;TLX2:-0.286111257757;GCM1,2:-0.28880456167;PAX1,9:-0.295253636965;AIRE:-0.299506439577;HOX{A5,B5}:-0.300072726314;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.346850856036;ZNF238:-0.356715865411;HNF4A_NR2F1,2:-0.372935130142;NFKB1_REL_RELA:-0.376704720799;MTF1:-0.388881417981;MYB:-0.392296627225;CUX2:-0.414186330362;EP300:-0.42608488492;IRF1,2:-0.431153367257;IKZF2:-0.460328581273;GATA6:-0.465590270546;PAX8:-0.484852965398;RREB1:-0.492261149124;MYFfamily:-0.498282022238;UFEwm:-0.517810223687;SMAD1..7,9:-0.520210524293;STAT5{A,B}:-0.534527832247;NR1H4:-0.548822157006;DBP:-0.55270968267;SPIB:-0.553618124073;SREBF1,2:-0.556651852502;NHLH1,2:-0.559133466845;NKX3-2:-0.592492063861;STAT1,3:-0.593575402149;ETS1,2:-0.620701452086;FOXA2:-0.622681707259;ESRRA:-0.633750403464;NKX2-2,8:-0.639208037701;HIF1A:-0.659955271272;AHR_ARNT_ARNT2:-0.665618440135;DMAP1_NCOR{1,2}_SMARC:-0.682456301795;EVI1:-0.712635068837;SPI1:-0.722775138853;NKX3-1:-0.727389812227;STAT2,4,6:-0.755660943737;NFE2L1:-0.78710620186;ALX4:-0.815312176092;RUNX1..3:-0.862152602661;PATZ1:-0.877870053377;RXR{A,B,G}:-0.884258211947;MZF1:-0.897708690076;PRDM1:-0.943915487563;GATA4:-0.964369976508;RXRA_VDR{dimer}:-0.968070452311;HES1:-0.978838138468;HMGA1,2:-0.982336720345;ALX1:-1.00856179343;ATF6:-1.08585154409;NR3C1:-1.15680050765;NFATC1..3:-1.22525546834;TFAP4:-1.26328974371;PAX3,7:-1.28084184954;XBP1:-1.32629854076;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.59801895605;POU3F1..4:-1.76825341356;NANOG{mouse}:-1.85752661982;SPZ1:-2.15875843252 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10553-107I4;search_select_hide=table117:FF:10553-107I4 | |||
}} | }} | ||
Latest revision as of 14:29, 3 June 2020
| Name: | cervical cancer cell line:ME-180 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11289 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11289
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11289
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.175 |
| 10 | 10 | 0.0482 |
| 100 | 100 | 0.934 |
| 101 | 101 | 0.765 |
| 102 | 102 | 0.374 |
| 103 | 103 | 0.0682 |
| 104 | 104 | 0.982 |
| 105 | 105 | 0.45 |
| 106 | 106 | 0.613 |
| 107 | 107 | 0.989 |
| 108 | 108 | 0.847 |
| 109 | 109 | 0.711 |
| 11 | 11 | 0.122 |
| 110 | 110 | 0.134 |
| 111 | 111 | 0.0269 |
| 112 | 112 | 0.315 |
| 113 | 113 | 0.118 |
| 114 | 114 | 0.018 |
| 115 | 115 | 0.295 |
| 116 | 116 | 0.121 |
| 117 | 117 | 0.153 |
| 118 | 118 | 0.0522 |
| 119 | 119 | 0.244 |
| 12 | 12 | 0.943 |
| 120 | 120 | 0.691 |
| 121 | 121 | 0.917 |
| 122 | 122 | 0.0585 |
| 123 | 123 | 0.58 |
| 124 | 124 | 0.211 |
| 125 | 125 | 0.268 |
| 126 | 126 | 0.733 |
| 127 | 127 | 0.266 |
| 128 | 128 | 0.137 |
| 129 | 129 | 0.826 |
| 13 | 13 | 0.721 |
| 130 | 130 | 0.205 |
| 131 | 131 | 0.344 |
| 132 | 132 | 0.237 |
| 133 | 133 | 0.177 |
| 134 | 134 | 0.424 |
| 135 | 135 | 0.215 |
| 136 | 136 | 0.0278 |
| 137 | 137 | 0.0753 |
| 138 | 138 | 0.582 |
| 139 | 139 | 0.0998 |
| 14 | 14 | 0.92 |
| 140 | 140 | 0.311 |
| 141 | 141 | 0.935 |
| 142 | 142 | 0.659 |
| 143 | 143 | 0.0747 |
| 144 | 144 | 0.13 |
| 145 | 145 | 0.512 |
| 146 | 146 | 0.194 |
| 147 | 147 | 0.875 |
| 148 | 148 | 0.103 |
| 149 | 149 | 0.125 |
| 15 | 15 | 0.123 |
| 150 | 150 | 0.952 |
| 151 | 151 | 0.495 |
| 152 | 152 | 0.793 |
| 153 | 153 | 0.452 |
| 154 | 154 | 0.928 |
| 155 | 155 | 0.581 |
| 156 | 156 | 0.54 |
| 157 | 157 | 0.83 |
| 158 | 158 | 0.287 |
| 159 | 159 | 0.47 |
| 16 | 16 | 0.973 |
| 160 | 160 | 0.142 |
| 161 | 161 | 0.979 |
| 162 | 162 | 0.93 |
| 163 | 163 | 0.601 |
| 164 | 164 | 0.121 |
| 165 | 165 | 0.328 |
| 166 | 166 | 0.203 |
| 167 | 167 | 0.87 |
| 168 | 168 | 0.905 |
| 169 | 169 | 0.112 |
| 17 | 17 | 0.9 |
| 18 | 18 | 0.13 |
| 19 | 19 | 0.0401 |
| 2 | 2 | 0.918 |
| 20 | 20 | 0.738 |
| 21 | 21 | 0.717 |
| 22 | 22 | 0.214 |
| 23 | 23 | 0.163 |
| 24 | 24 | 0.452 |
| 25 | 25 | 0.767 |
| 26 | 26 | 0.247 |
| 27 | 27 | 0.396 |
| 28 | 28 | 0.316 |
| 29 | 29 | 0.493 |
| 3 | 3 | 0.101 |
| 30 | 30 | 0.158 |
| 31 | 31 | 0.166 |
| 32 | 32 | 0.00837 |
| 33 | 33 | 0.455 |
| 34 | 34 | 0.0909 |
| 35 | 35 | 0.0401 |
| 36 | 36 | 0.068 |
| 37 | 37 | 0.238 |
| 38 | 38 | 0.841 |
| 39 | 39 | 0.909 |
| 4 | 4 | 0.641 |
| 40 | 40 | 0.842 |
| 41 | 41 | 0.275 |
| 42 | 42 | 0.785 |
| 43 | 43 | 0.0842 |
| 44 | 44 | 0.751 |
| 45 | 45 | 0.718 |
| 46 | 46 | 0.213 |
| 47 | 47 | 0.355 |
| 48 | 48 | 0.463 |
| 49 | 49 | 0.0579 |
| 5 | 5 | 0.515 |
| 50 | 50 | 0.872 |
| 51 | 51 | 0.185 |
| 52 | 52 | 0.348 |
| 53 | 53 | 0.75 |
| 54 | 54 | 0.604 |
| 55 | 55 | 0.438 |
| 56 | 56 | 0.892 |
| 57 | 57 | 0.885 |
| 58 | 58 | 0.831 |
| 59 | 59 | 0.184 |
| 6 | 6 | 0.755 |
| 60 | 60 | 0.785 |
| 61 | 61 | 0.866 |
| 62 | 62 | 0.25 |
| 63 | 63 | 0.964 |
| 64 | 64 | 0.369 |
| 65 | 65 | 0.223 |
| 66 | 66 | 0.0252 |
| 67 | 67 | 0.639 |
| 68 | 68 | 0.142 |
| 69 | 69 | 0.468 |
| 7 | 7 | 0.616 |
| 70 | 70 | 0.385 |
| 71 | 71 | 0.314 |
| 72 | 72 | 0.743 |
| 73 | 73 | 0.632 |
| 74 | 74 | 0.00547 |
| 75 | 75 | 0.596 |
| 76 | 76 | 0.468 |
| 77 | 77 | 0.212 |
| 78 | 78 | 0.239 |
| 79 | 79 | 0.00944 |
| 8 | 8 | 0.168 |
| 80 | 80 | 0.354 |
| 81 | 81 | 0.14 |
| 82 | 82 | 0.0103 |
| 83 | 83 | 0.717 |
| 84 | 84 | 0.926 |
| 85 | 85 | 0.161 |
| 86 | 86 | 0.446 |
| 87 | 87 | 0.106 |
| 88 | 88 | 0.875 |
| 89 | 89 | 0.714 |
| 9 | 9 | 0.147 |
| 90 | 90 | 0.239 |
| 91 | 91 | 0.0798 |
| 92 | 92 | 0.193 |
| 93 | 93 | 0.648 |
| 94 | 94 | 0.00655 |
| 95 | 95 | 0.172 |
| 96 | 96 | 0.0308 |
| 97 | 97 | 0.648 |
| 98 | 98 | 0.0877 |
| 99 | 99 | 0.996 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11289
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101967 cervical cancer cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)
120 (female reproductive organ cancer)
4362 (cervical cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000002 (uterine cervix)
0000995 (uterus)
0003134 (female reproductive organ)
0001560 (neck of organ)
0005156 (reproductive structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101967 (cervical cancer cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)
