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|DRA_sample_Accession=CAGE@SAMD00004998
|DRA_sample_Accession=CAGE@SAMD00004998
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00004998
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00004998
|accession_numbers=CAGE;DRX008010;DRR008882;DRZ000307;DRZ001692
|accession_numbers=CAGE;DRX008010;DRR008882;DRZ000307;DRZ001692;DRZ011657;DRZ013042
|accession_numbers_RNASeq=RNA-Seq;DRX057133;DRR062892;DRZ007968
|accession_numbers_RNASeq=RNA-Seq;DRX057133;DRR062892;DRZ007968
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
Line 54: Line 54:
|microRNAs=
|microRNAs=
|microRNAs_nn=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#cage;sample;10609
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10609
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#cage;sample;10609
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10609
|name=small-cell gastrointestinal carcinoma cell line:ECC4
|name=small-cell gastrointestinal carcinoma cell line:ECC4
|namespace=FANTOM5
|namespace=FANTOM5
Line 63: Line 63:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 102: Line 102:
|top_motifs=SNAI1..3:2.82966662231;LMO2:2.80810727022;ZEB1:2.61779373638;ARID5B:2.37620166644;MYOD1:2.14016117177;ATF6:2.12338680858;NKX6-1,2:2.02198606187;ELK1,4_GABP{A,B1}:1.98792448444;HAND1,2:1.88268599982;FOXQ1:1.82048048965;ONECUT1,2:1.62349829394;RFX1:1.56595650372;ALX1:1.46611847342;NKX2-3_NKX2-5:1.46217787488;HOX{A6,A7,B6,B7}:1.40546706655;FOX{D1,D2}:1.36410976402;ZBTB16:1.31296992563;PDX1:1.2507275433;NFY{A,B,C}:1.17890125882;BREu{core}:1.13296732731;RFX2..5_RFXANK_RFXAP:1.09413095437;NKX3-2:1.09342025096;DBP:1.06460929891;NRF1:1.05853044614;TEF:1.03588582507;PAX3,7:1.03425012285;NHLH1,2:0.894839746258;TGIF1:0.882917473114;NKX3-1:0.874431633943;GFI1:0.861675762674;E2F1..5:0.854347933905;FOXA2:0.844746315923;bHLH_family:0.837360621691;FOX{F1,F2,J1}:0.800906934456;EVI1:0.785363684612;T:0.778568015493;POU6F1:0.770118504023;FOXN1:0.765396417639;FOXO1,3,4:0.730562550394;YY1:0.718779104192;XCPE1{core}:0.700158673185;ZNF143:0.687496383969;NR6A1:0.670125185888;FOXP1:0.656731253173;SOX{8,9,10}:0.646308742531;ATF4:0.637838935366;HIF1A:0.594111430468;MYFfamily:0.586348589748;ATF5_CREB3:0.534373889299;NANOG:0.52841086957;ATF2:0.520880549136;ADNP_IRX_SIX_ZHX:0.498970066369;PAX4:0.487609566771;FOXL1:0.482875803658;AIRE:0.438606169662;UFEwm:0.422450741482;MAFB:0.418192842213;FOX{I1,J2}:0.399013082672;REST:0.397706521823;PAX8:0.37953551058;SREBF1,2:0.372109685882;GFI1B:0.36125786171;NR5A1,2:0.354847910932;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.354214504555;FOXM1:0.347507422122;TBX4,5:0.340892711219;POU2F1..3:0.329128784654;ZBTB6:0.306312697182;CDX1,2,4:0.245322022597;JUN:0.232124577324;POU1F1:0.230957993791;IKZF2:0.208797320863;HOX{A4,D4}:0.198303512984;PBX1:0.187330756707;RORA:0.1641640981;PPARG:0.16295017478;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.153714387232;XBP1:0.150749937797;MED-1{core}:0.139665325649;PITX1..3:0.122600334868;TFAP2B:0.100644855846;AR:0.0978951617563;SOX2:0.0959041498105;HNF4A_NR2F1,2:0.0951090515887;EGR1..3:0.0540941749219;GCM1,2:0.0322086029962;ELF1,2,4:0.0107131676253;FOXD3:-0.000180661318901;SP1:-0.00359005341065;KLF4:-0.0222532076833;ALX4:-0.0505504027251;SPZ1:-0.0597658264965;NKX2-1,4:-0.0695876319057;STAT1,3:-0.0862866736143;FOSL2:-0.125634946427;TLX2:-0.129162292964;EBF1:-0.133041970626;HMX1:-0.139976189777;HIC1:-0.162199109449;HNF1A:-0.164478179584;SOX17:-0.180965930277;MEF2{A,B,C,D}:-0.181663576298;CUX2:-0.213731630974;TOPORS:-0.216663757848;CREB1:-0.22524590793;ZIC1..3:-0.239423547065;MTE{core}:-0.240890634552;TFDP1:-0.250860561697;POU3F1..4:-0.290904066434;MYB:-0.295402644838;MTF1:-0.318523659244;AHR_ARNT_ARNT2:-0.333448880846;GATA4:-0.336116893819;NANOG{mouse}:-0.342875566271;GATA6:-0.351742133227;FOS_FOS{B,L1}_JUN{B,D}:-0.357347993356;NFE2L1:-0.387363862693;ETS1,2:-0.394820215053;ZFP161:-0.412414899881;NKX2-2,8:-0.413705471346;HOXA9_MEIS1:-0.426902445187;HLF:-0.434744150747;EP300:-0.446581570052;TFAP2{A,C}:-0.458140552763;BACH2:-0.472848054295;EN1,2:-0.494681692897;TAL1_TCF{3,4,12}:-0.502169806553;ZNF423:-0.510814186666;TBP:-0.521054047887;RREB1:-0.524842221737;LHX3,4:-0.528543188534;GTF2I:-0.547833630904;GZF1:-0.549252066116;NFE2:-0.555831707454;SPIB:-0.565863353262;TFAP4:-0.595001375842;SPI1:-0.596850368772;HBP1_HMGB_SSRP1_UBTF:-0.633496021684;FOXP3:-0.649315446137;OCT4_SOX2{dimer}:-0.650733524009;IRF1,2:-0.668825057649;SOX5:-0.672265265624;TFCP2:-0.685200608416;NFKB1_REL_RELA:-0.720615074475;CRX:-0.744078633141;STAT5{A,B}:-0.776852700849;TP53:-0.778328962321;NR1H4:-0.785974445624;PAX2:-0.789489475516;MAZ:-0.803387329753;CEBPA,B_DDIT3:-0.804838252384;PRRX1,2:-0.805254698062;RUNX1..3:-0.806892220341;PAX1,9:-0.814363709987;POU5F1:-0.827476924889;BPTF:-0.84863265796;DMAP1_NCOR{1,2}_SMARC:-0.883797227882;NFE2L2:-0.899367612255;ESR1:-0.912575598405;GLI1..3:-0.914228511586;STAT2,4,6:-0.918293478743;VSX1,2:-0.936339047584;CDC5L:-0.946580690778;RBPJ:-1.00066122219;PATZ1:-1.00905867371;HSF1,2:-1.02300709406;RXR{A,B,G}:-1.02481144755;IKZF1:-1.02602797347;HMGA1,2:-1.03034694592;TEAD1:-1.03392112052;RXRA_VDR{dimer}:-1.05281930134;LEF1_TCF7_TCF7L1,2:-1.08155725044;PAX5:-1.11926435339;ESRRA:-1.15529875162;IRF7:-1.17722268307;NR3C1:-1.1914320734;ZNF384:-1.23393778498;HES1:-1.2510269837;ZNF238:-1.27586296533;NFIX:-1.30198303953;ZNF148:-1.34129396876;MZF1:-1.35668903869;PAX6:-1.41787149199;GTF2A1,2:-1.45241138012;PRDM1:-1.47053764108;TLX1..3_NFIC{dimer}:-1.50774039115;SRF:-1.50860067718;SMAD1..7,9:-1.54451789265;NFIL3:-1.75914889672;NFATC1..3:-1.83153101634;MYBL2:-1.90421920982;HOX{A5,B5}:-1.91804827578
|top_motifs=SNAI1..3:2.82966662231;LMO2:2.80810727022;ZEB1:2.61779373638;ARID5B:2.37620166644;MYOD1:2.14016117177;ATF6:2.12338680858;NKX6-1,2:2.02198606187;ELK1,4_GABP{A,B1}:1.98792448444;HAND1,2:1.88268599982;FOXQ1:1.82048048965;ONECUT1,2:1.62349829394;RFX1:1.56595650372;ALX1:1.46611847342;NKX2-3_NKX2-5:1.46217787488;HOX{A6,A7,B6,B7}:1.40546706655;FOX{D1,D2}:1.36410976402;ZBTB16:1.31296992563;PDX1:1.2507275433;NFY{A,B,C}:1.17890125882;BREu{core}:1.13296732731;RFX2..5_RFXANK_RFXAP:1.09413095437;NKX3-2:1.09342025096;DBP:1.06460929891;NRF1:1.05853044614;TEF:1.03588582507;PAX3,7:1.03425012285;NHLH1,2:0.894839746258;TGIF1:0.882917473114;NKX3-1:0.874431633943;GFI1:0.861675762674;E2F1..5:0.854347933905;FOXA2:0.844746315923;bHLH_family:0.837360621691;FOX{F1,F2,J1}:0.800906934456;EVI1:0.785363684612;T:0.778568015493;POU6F1:0.770118504023;FOXN1:0.765396417639;FOXO1,3,4:0.730562550394;YY1:0.718779104192;XCPE1{core}:0.700158673185;ZNF143:0.687496383969;NR6A1:0.670125185888;FOXP1:0.656731253173;SOX{8,9,10}:0.646308742531;ATF4:0.637838935366;HIF1A:0.594111430468;MYFfamily:0.586348589748;ATF5_CREB3:0.534373889299;NANOG:0.52841086957;ATF2:0.520880549136;ADNP_IRX_SIX_ZHX:0.498970066369;PAX4:0.487609566771;FOXL1:0.482875803658;AIRE:0.438606169662;UFEwm:0.422450741482;MAFB:0.418192842213;FOX{I1,J2}:0.399013082672;REST:0.397706521823;PAX8:0.37953551058;SREBF1,2:0.372109685882;GFI1B:0.36125786171;NR5A1,2:0.354847910932;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.354214504555;FOXM1:0.347507422122;TBX4,5:0.340892711219;POU2F1..3:0.329128784654;ZBTB6:0.306312697182;CDX1,2,4:0.245322022597;JUN:0.232124577324;POU1F1:0.230957993791;IKZF2:0.208797320863;HOX{A4,D4}:0.198303512984;PBX1:0.187330756707;RORA:0.1641640981;PPARG:0.16295017478;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.153714387232;XBP1:0.150749937797;MED-1{core}:0.139665325649;PITX1..3:0.122600334868;TFAP2B:0.100644855846;AR:0.0978951617563;SOX2:0.0959041498105;HNF4A_NR2F1,2:0.0951090515887;EGR1..3:0.0540941749219;GCM1,2:0.0322086029962;ELF1,2,4:0.0107131676253;FOXD3:-0.000180661318901;SP1:-0.00359005341065;KLF4:-0.0222532076833;ALX4:-0.0505504027251;SPZ1:-0.0597658264965;NKX2-1,4:-0.0695876319057;STAT1,3:-0.0862866736143;FOSL2:-0.125634946427;TLX2:-0.129162292964;EBF1:-0.133041970626;HMX1:-0.139976189777;HIC1:-0.162199109449;HNF1A:-0.164478179584;SOX17:-0.180965930277;MEF2{A,B,C,D}:-0.181663576298;CUX2:-0.213731630974;TOPORS:-0.216663757848;CREB1:-0.22524590793;ZIC1..3:-0.239423547065;MTE{core}:-0.240890634552;TFDP1:-0.250860561697;POU3F1..4:-0.290904066434;MYB:-0.295402644838;MTF1:-0.318523659244;AHR_ARNT_ARNT2:-0.333448880846;GATA4:-0.336116893819;NANOG{mouse}:-0.342875566271;GATA6:-0.351742133227;FOS_FOS{B,L1}_JUN{B,D}:-0.357347993356;NFE2L1:-0.387363862693;ETS1,2:-0.394820215053;ZFP161:-0.412414899881;NKX2-2,8:-0.413705471346;HOXA9_MEIS1:-0.426902445187;HLF:-0.434744150747;EP300:-0.446581570052;TFAP2{A,C}:-0.458140552763;BACH2:-0.472848054295;EN1,2:-0.494681692897;TAL1_TCF{3,4,12}:-0.502169806553;ZNF423:-0.510814186666;TBP:-0.521054047887;RREB1:-0.524842221737;LHX3,4:-0.528543188534;GTF2I:-0.547833630904;GZF1:-0.549252066116;NFE2:-0.555831707454;SPIB:-0.565863353262;TFAP4:-0.595001375842;SPI1:-0.596850368772;HBP1_HMGB_SSRP1_UBTF:-0.633496021684;FOXP3:-0.649315446137;OCT4_SOX2{dimer}:-0.650733524009;IRF1,2:-0.668825057649;SOX5:-0.672265265624;TFCP2:-0.685200608416;NFKB1_REL_RELA:-0.720615074475;CRX:-0.744078633141;STAT5{A,B}:-0.776852700849;TP53:-0.778328962321;NR1H4:-0.785974445624;PAX2:-0.789489475516;MAZ:-0.803387329753;CEBPA,B_DDIT3:-0.804838252384;PRRX1,2:-0.805254698062;RUNX1..3:-0.806892220341;PAX1,9:-0.814363709987;POU5F1:-0.827476924889;BPTF:-0.84863265796;DMAP1_NCOR{1,2}_SMARC:-0.883797227882;NFE2L2:-0.899367612255;ESR1:-0.912575598405;GLI1..3:-0.914228511586;STAT2,4,6:-0.918293478743;VSX1,2:-0.936339047584;CDC5L:-0.946580690778;RBPJ:-1.00066122219;PATZ1:-1.00905867371;HSF1,2:-1.02300709406;RXR{A,B,G}:-1.02481144755;IKZF1:-1.02602797347;HMGA1,2:-1.03034694592;TEAD1:-1.03392112052;RXRA_VDR{dimer}:-1.05281930134;LEF1_TCF7_TCF7L1,2:-1.08155725044;PAX5:-1.11926435339;ESRRA:-1.15529875162;IRF7:-1.17722268307;NR3C1:-1.1914320734;ZNF384:-1.23393778498;HES1:-1.2510269837;ZNF238:-1.27586296533;NFIX:-1.30198303953;ZNF148:-1.34129396876;MZF1:-1.35668903869;PAX6:-1.41787149199;GTF2A1,2:-1.45241138012;PRDM1:-1.47053764108;TLX1..3_NFIC{dimer}:-1.50774039115;SRF:-1.50860067718;SMAD1..7,9:-1.54451789265;NFIL3:-1.75914889672;NFATC1..3:-1.83153101634;MYBL2:-1.90421920982;HOX{A5,B5}:-1.91804827578
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10609-108F6;search_select_hide=table117:FF:10609-108F6
}}
}}

Latest revision as of 14:31, 3 June 2020

Name:small-cell gastrointestinal carcinoma cell line:ECC4
Species:Human (Homo sapiens)
Library ID:CNhs11734
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueintestine
dev stageNA
sexmale
age45
cell typeunclassifiable
cell lineECC4
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004998
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11734 CAGE DRX008010 DRR008882
Accession ID Hg19

Library idBAMCTSS
CNhs11734 DRZ000307 DRZ001692
Accession ID Hg38

Library idBAMCTSS
CNhs11734 DRZ011657 DRZ013042
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00004998
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10076 RNA-Seq DRX057133 DRR062892
Accession ID Hg19

Library idBAMCTSS
RDhi10076 DRZ007968


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
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C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma1.341
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11734

Jaspar motifP-value
MA0002.29.16619e-4
MA0003.10.318
MA0004.10.318
MA0006.10.973
MA0007.10.473
MA0009.10.45
MA0014.10.706
MA0017.10.485
MA0018.20.00572
MA0019.10.73
MA0024.12.87804e-5
MA0025.10.753
MA0027.10.3
MA0028.16.89781e-7
MA0029.10.622
MA0030.10.0265
MA0031.10.00329
MA0035.20.558
MA0038.10.0842
MA0039.20.182
MA0040.10.931
MA0041.10.551
MA0042.10.655
MA0043.10.715
MA0046.10.882
MA0047.22.65281e-4
MA0048.10.0119
MA0050.12.71715e-6
MA0051.10.00107
MA0052.10.386
MA0055.10.076
MA0057.10.916
MA0058.10.267
MA0059.10.842
MA0060.11.11425e-10
MA0061.17.18208e-5
MA0062.25.70639e-11
MA0065.20.343
MA0066.10.392
MA0067.10.799
MA0068.10.0169
MA0069.10.172
MA0070.10.597
MA0071.10.387
MA0072.10.503
MA0073.10.619
MA0074.10.716
MA0076.13.14093e-11
MA0077.10.303
MA0078.10.997
MA0079.20.454
MA0080.22.59696e-4
MA0081.10.0643
MA0083.10.0161
MA0084.10.484
MA0087.10.648
MA0088.10.6
MA0090.15.57127e-4
MA0091.10.298
MA0092.10.126
MA0093.10.227
MA0099.21.77917e-10
MA0100.10.399
MA0101.11.81901e-5
MA0102.20.0718
MA0103.15.72367e-10
MA0104.20.169
MA0105.15.7269e-5
MA0106.10.811
MA0107.12.66556e-5
MA0108.20.199
MA0111.10.858
MA0112.20.0487
MA0113.10.00965
MA0114.10.348
MA0115.10.0926
MA0116.10.00807
MA0117.10.888
MA0119.10.0267
MA0122.10.373
MA0124.10.589
MA0125.10.0129
MA0131.10.0858
MA0135.10.0115
MA0136.10.108
MA0137.20.0244
MA0138.20.572
MA0139.10.349
MA0140.10.412
MA0141.10.572
MA0142.10.629
MA0143.10.514
MA0144.10.169
MA0145.10.585
MA0146.10.92
MA0147.10.356
MA0148.15.12569e-5
MA0149.10.744
MA0150.10.00255
MA0152.10.254
MA0153.10.211
MA0154.10.00412
MA0155.10.0957
MA0156.10.377
MA0157.10.0305
MA0159.10.0672
MA0160.10.698
MA0162.10.0894
MA0163.10.00381
MA0164.10.789
MA0258.10.172
MA0259.10.266



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11734

Novel motifP-value
10.706
100.893
1000.581
1010.617
1020.127
1030.178
1040.558
1050.354
1060.0176
1070.0673
1080.554
1090.893
110.645
1100.193
1110.228
1120.738
1130.0494
1140.503
1150.0608
1160.216
1170.698
1180.897
1190.706
120.4
1200.372
1210.822
1220.256
1230.575
1240.276
1250.626
1260.607
1270.178
1280.303
1290.668
130.816
1300.276
1310.501
1320.563
1330.477
1340.631
1350.0797
1360.029
1370.0368
1380.736
1390.586
140.725
1400.376
1410.44
1420.854
1430.108
1440.00441
1450.264
1460.5
1470.885
1480.594
1490.854
150.601
1500.656
1510.514
1520.0629
1530.966
1540.752
1550.12
1560.326
1570.41
1580.771
1590.265
160.895
1600.0553
1610.839
1620.901
1630.58
1640.285
1650.538
1660.335
1670.147
1680.0146
1690.0593
170.353
180.553
190.198
20.566
200.94
210.0803
220.144
230.0488
240.405
250.669
260.711
270.949
280.999
290.453
30.257
300.502
310.595
320.0294
330.958
340.085
350.446
360.517
370.626
380.993
390.0517
40.656
400.212
410.39
420.218
430.189
440.421
450.05
460.987
470.411
480.969
490.23
50.754
500.188
510.408
520.132
530.268
540.271
550.454
560.785
570.555
580.405
590.111
60.348
600.112
610.467
620.201
630.226
640.928
650.501
660.294
670.748
680.48
690.884
70.854
700.501
710.612
720.213
730.45
740.291
750.839
760.717
770.0312
780.0974
790.705
80.99
800.0908
810.0797
820.155
830.199
840.493
850.0907
860.2
870.284
880.316
890.605
90.137
900.266
910.188
920.259
930.419
940.443
950.635
960.245
970.485
980.156
990.473



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11734


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
3119 (gastrointestinal system cancer)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0101533 (gastrointestinal cancer cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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