FF:10610-108F7: Difference between revisions

Latest revision as of 14:31, 3 June 2020

Name:	small cell gastrointestinal carcinoma cell line:ECC10
Species:	Human (Homo sapiens)
Library ID:	CNhs11736
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	stomach
dev stage	NA
sex	unknown
age	unknown
cell type	unclassifiable
cell line	ECC10
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005425

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11736		CAGE		DRX008005		DRR008877

Accession ID Hg19

Library id		BAM		CTSS
CNhs11736		DRZ000302		DRZ001687

Accession ID Hg38

Library id		BAM		CTSS
CNhs11736		DRZ011652		DRZ013037

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	1.019
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.449
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.524
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0788
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0788
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.879
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0105
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0938
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.489
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.212
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.24
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.174
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0203
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.145
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0788
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.145
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.124
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.449
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.203
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0178
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11736

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	7.0154e-5
MA0003.1	MA0003.1	0.0434
MA0004.1	MA0004.1	0.834
MA0006.1	MA0006.1	0.58
MA0007.1	MA0007.1	0.228
MA0009.1	MA0009.1	0.964
MA0014.1	MA0014.1	0.29
MA0017.1	MA0017.1	0.00232
MA0018.2	MA0018.2	0.00459
MA0019.1	MA0019.1	0.889
MA0024.1	MA0024.1	4.06662e-4
MA0025.1	MA0025.1	0.449
MA0027.1	MA0027.1	0.458
MA0028.1	MA0028.1	0.132
MA0029.1	MA0029.1	0.576
MA0030.1	MA0030.1	0.22
MA0031.1	MA0031.1	0.418
MA0035.2	MA0035.2	0.322
MA0038.1	MA0038.1	0.0165
MA0039.2	MA0039.2	0.621
MA0040.1	MA0040.1	0.318
MA0041.1	MA0041.1	0.236
MA0042.1	MA0042.1	0.491
MA0043.1	MA0043.1	0.0494
MA0046.1	MA0046.1	0.623
MA0047.2	MA0047.2	0.76
MA0048.1	MA0048.1	0.721
MA0050.1	MA0050.1	1.17104e-5
MA0051.1	MA0051.1	9.35666e-5
MA0052.1	MA0052.1	0.0819
MA0055.1	MA0055.1	0.628
MA0057.1	MA0057.1	0.102
MA0058.1	MA0058.1	0.862
MA0059.1	MA0059.1	0.608
MA0060.1	MA0060.1	3.42228e-10
MA0061.1	MA0061.1	0.00363
MA0062.2	MA0062.2	0.386
MA0065.2	MA0065.2	0.0049
MA0066.1	MA0066.1	0.0431
MA0067.1	MA0067.1	0.77
MA0068.1	MA0068.1	0.69
MA0069.1	MA0069.1	0.942
MA0070.1	MA0070.1	0.199
MA0071.1	MA0071.1	0.656
MA0072.1	MA0072.1	0.929
MA0073.1	MA0073.1	0.394
MA0074.1	MA0074.1	0.366
MA0076.1	MA0076.1	0.054
MA0077.1	MA0077.1	0.144
MA0078.1	MA0078.1	0.932
MA0079.2	MA0079.2	0.454
MA0080.2	MA0080.2	1.70892e-10
MA0081.1	MA0081.1	0.0442
MA0083.1	MA0083.1	0.0698
MA0084.1	MA0084.1	0.482
MA0087.1	MA0087.1	0.837
MA0088.1	MA0088.1	0.964
MA0090.1	MA0090.1	0.015
MA0091.1	MA0091.1	0.832
MA0092.1	MA0092.1	0.102
MA0093.1	MA0093.1	0.942
MA0099.2	MA0099.2	4.07332e-12
MA0100.1	MA0100.1	0.3
MA0101.1	MA0101.1	0.0177
MA0102.2	MA0102.2	0.0335
MA0103.1	MA0103.1	0.166
MA0104.2	MA0104.2	0.834
MA0105.1	MA0105.1	4.47709e-4
MA0106.1	MA0106.1	0.217
MA0107.1	MA0107.1	0.00349
MA0108.2	MA0108.2	0.253
MA0111.1	MA0111.1	0.869
MA0112.2	MA0112.2	4.95063e-5
MA0113.1	MA0113.1	0.0934
MA0114.1	MA0114.1	0.0624
MA0115.1	MA0115.1	0.648
MA0116.1	MA0116.1	5.5775e-4
MA0117.1	MA0117.1	0.784
MA0119.1	MA0119.1	0.232
MA0122.1	MA0122.1	0.357
MA0124.1	MA0124.1	0.542
MA0125.1	MA0125.1	0.0456
MA0131.1	MA0131.1	0.209
MA0135.1	MA0135.1	0.858
MA0136.1	MA0136.1	4.36552e-8
MA0137.2	MA0137.2	0.0451
MA0138.2	MA0138.2	0.797
MA0139.1	MA0139.1	0.399
MA0140.1	MA0140.1	0.0494
MA0141.1	MA0141.1	0.15
MA0142.1	MA0142.1	0.0146
MA0143.1	MA0143.1	0.285
MA0144.1	MA0144.1	0.0061
MA0145.1	MA0145.1	0.0592
MA0146.1	MA0146.1	0.715
MA0147.1	MA0147.1	0.941
MA0148.1	MA0148.1	0.994
MA0149.1	MA0149.1	0.202
MA0150.1	MA0150.1	2.03073e-4
MA0152.1	MA0152.1	0.398
MA0153.1	MA0153.1	0.416
MA0154.1	MA0154.1	0.00621
MA0155.1	MA0155.1	0.243
MA0156.1	MA0156.1	1.72582e-4
MA0157.1	MA0157.1	0.877
MA0159.1	MA0159.1	0.00655
MA0160.1	MA0160.1	0.141
MA0162.1	MA0162.1	0.171
MA0163.1	MA0163.1	1.68102e-7
MA0164.1	MA0164.1	0.789
MA0258.1	MA0258.1	0.0144
MA0259.1	MA0259.1	0.674

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11736

Novel motif	Logo	P-value
1	1	0.162
10	10	0.151
100	100	0.85
101	101	0.66
102	102	0.41
103	103	0.0374
104	104	0.31
105	105	0.116
106	106	0.0058
107	107	0.0419
108	108	0.999
109	109	0.221
11	11	0.133
110	110	0.296
111	111	0.333
112	112	0.159
113	113	0.157
114	114	0.0341
115	115	0.5
116	116	0.263
117	117	0.432
118	118	0.764
119	119	0.302
12	12	0.66
120	120	0.556
121	121	0.882
122	122	0.822
123	123	0.612
124	124	0.255
125	125	0.15
126	126	0.564
127	127	0.563
128	128	0.0598
129	129	0.282
13	13	0.351
130	130	0.641
131	131	0.518
132	132	0.646
133	133	0.478
134	134	0.621
135	135	0.00127
136	136	0.357
137	137	0.174
138	138	0.793
139	139	0.215
14	14	0.895
140	140	0.681
141	141	0.898
142	142	0.996
143	143	0.0166
144	144	0.566
145	145	0.303
146	146	0.349
147	147	0.506
148	148	0.052
149	149	0.121
15	15	0.0804
150	150	0.567
151	151	0.463
152	152	0.0581
153	153	0.341
154	154	0.552
155	155	0.624
156	156	0.754
157	157	0.505
158	158	0.317
159	159	0.0138
16	16	0.153
160	160	0.0293
161	161	0.527
162	162	0.815
163	163	0.468
164	164	0.273
165	165	0.183
166	166	0.716
167	167	0.505
168	168	0.0601
169	169	0.00589
17	17	0.176
18	18	0.154
19	19	0.093
2	2	0.425
20	20	0.606
21	21	0.298
22	22	0.166
23	23	0.0125
24	24	0.122
25	25	0.466
26	26	0.131
27	27	0.142
28	28	0.758
29	29	0.117
3	3	0.111
30	30	0.439
31	31	0.575
32	32	0.00612
33	33	0.256
34	34	0.255
35	35	0.305
36	36	0.56
37	37	0.126
38	38	0.477
39	39	0.171
4	4	0.735
40	40	0.65
41	41	0.141
42	42	0.253
43	43	0.0902
44	44	0.636
45	45	0.287
46	46	0.191
47	47	0.722
48	48	0.354
49	49	0.372
5	5	0.136
50	50	0.752
51	51	0.307
52	52	0.133
53	53	0.599
54	54	0.3
55	55	0.227
56	56	0.544
57	57	0.559
58	58	0.197
59	59	0.0149
6	6	0.979
60	60	0.0236
61	61	0.39
62	62	0.0417
63	63	0.235
64	64	0.301
65	65	0.172
66	66	0.284
67	67	0.803
68	68	0.421
69	69	0.432
7	7	0.371
70	70	0.11
71	71	0.112
72	72	0.0971
73	73	0.132
74	74	0.231
75	75	0.397
76	76	0.924
77	77	0.083
78	78	0.309
79	79	0.415
8	8	0.133
80	80	0.105
81	81	0.209
82	82	0.033
83	83	0.0327
84	84	0.294
85	85	0.00551
86	86	0.311
87	87	0.193
88	88	0.676
89	89	0.103
9	9	0.122
90	90	0.374
91	91	0.228
92	92	0.043
93	93	0.912
94	94	0.101
95	95	0.375
96	96	0.331
97	97	0.66
98	98	0.454
99	99	0.506

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11736

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100297 carcinoma cell line sample
FF:0101533 gastrointestinal cancer cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
3119 (gastrointestinal system cancer)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0101533 (gastrointestinal cancer cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005425
-|accession_numbers=CAGE;DRX008005;DRR008877;DRZ000302;DRZ001687
+|accession_numbers=CAGE;DRX008005;DRR008877;DRZ000302;DRZ001687;DRZ011652;DRZ013037
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr13:72441315..72441454,-!p1@DACH1!2.57!719.01!DACH1;;chr17:48072574..48072597,-!p1@DLX3!2.43!270.77!DLX3;;chr2:182545234..182545252,-!p1@NEUROD1!2.39!242.72!NEUROD1;;chr1:216896752..216896778,-!p1@ESRRG!2.36!228.79!ESRRG;;chr2:166326200..166326216,+!p1@CSRNP3!2.23!240.53!CSRNP3;;chr1:214161272..214161322,+!p1@PROX1!2.14!190.79!PROX1;;chr4:4861385..4861398,+!p1@MSX1!2.12!368.46!MSX1;;chr8:53166899..53166914,-!p3@ST18!2.06!113.00!ST18;;chr20:20348740..20348757,+!p1@INSM1!2.03!106.84!INSM1;;chr2:172949484..172949522,+!p1@DLX1!2.03!106.04!DLX1;;chr2:172950227..172950249,+!p2@DLX1!1.93!84.75!DLX1;;chr11:2292226..2292270,-!p1@ASCL2!1.91!80.58!ASCL2;;chr14:38064429..38064486,-!p1@FOXA1!1.88!74.21!FOXA1;;chr13:72441074..72441172,-!p2@DACH1!1.87!73.81!DACH1;;chr2:200322654..200322707,-!p2@SATB2!1.86!102.66!SATB2;;chr17:37764128..37764258,-!p1@NEUROD2!1.86!71.22!NEUROD2;;chr2:172967621..172967637,-!p1@DLX2!1.85!180.05!DLX2;;chr2:172967242..172967265,-!p2@DLX2!1.84!67.64!DLX2;;chr7:27224795..27224840,-!p2@HOXA11!1.78!59.09!HOXA11;;chr8:53162037..53162058,-!p5@ST18!1.77!58.09!ST18;;chr6:10412600..10412637,-!p1@TFAP2A!1.75!91.12!TFAP2A;;chr1:216896780..216896800,-!p2@ESRRG!1.75!55.51!ESRRG;;chr4:109089901..109089930,-!p3@LEF1!1.73!52.92!LEF1;;chr2:85981107..85981120,+!p3@ATOH8!1.70!49.14!ATOH8;;chr2:172967276..172967296,-!p3@DLX2!1.70!48.74!DLX2;;chr7:27239740..27239759,-!p2@HOXA13!1.69!47.75!HOXA13;;chr2:172967353..172967365,-!p5@DLX2!1.68!46.36!DLX2;;chr18:53089453..53089482,-!p11@TCF4!1.67!45.76!TCF4;;chr7:27224842..27224872,-!p1@HOXA11!1.67!45.56!HOXA11;;chr18:53089493..53089517,-!p15@TCF4!1.62!40.59!TCF4;;chr7:27205136..27205164,-!p1@HOXA9!1.62!40.39!HOXA9;;chr5:92918919..92918942,+!p1@NR2F1!1.61!172.29!NR2F1;;chr11:63684602..63684664,-!p1@RCOR2!1.61!76.79!RCOR2;;chr11:2291814..2291825,-!p2@ASCL2!1.60!38.80!ASCL2;;chr20:22565370..22565388,-!p2@FOXA2!1.57!36.21!FOXA2;;chr7:27213893..27213954,-!p1@HOXA10!1.57!35.81!HOXA10;;chr8:93107451..93107468,-!p2@RUNX1T1!1.52!31.83!RUNX1T1;;chr2:172967323..172967336,-!p4@DLX2!1.51!31.63!DLX2;;chr4:109090075..109090095,-!p2@LEF1!1.51!31.43!LEF1;;chr19:13134772..13134822,+!p2@NFIX!1.50!44.56!NFIX;;chr2:219849897..219849928,-!p2@FEV!1.50!30.64!FEV;;chr5:174151612..174151633,+!p2@MSX2!1.50!30.64!MSX2;;chr6:21593973..21593988,+!p1@SOX4!1.49!1016.44!SOX4;;chr7:73038839..73038862,-!p1@MLXIPL!1.49!30.24!MLXIPL;;chr18:72922743..72922761,+!p3@TSHZ1!1.48!94.10!TSHZ1;;chr7:27192185..27192209,-!p1@HOXA3!1.48!29.44!HOXA3;;chr5:172662197..172662216,-!p1@NKX2-5!1.48!29.25!NKX2-5;;chr8:93107696..93107716,-!p8@RUNX1T1!1.48!29.25!RUNX1T1;;chr5:174151553..174151610,+!p1@MSX2!1.46!45.56!MSX2;;chr6:10412392..10412409,-!p4@TFAP2A!1.46!31.43!TFAP2A;;chr1:6479968..6479986,-!p1@HES2!1.46!27.65!HES2;;chr18:53089521..53089533,-!p22@TCF4!1.45!27.26!TCF4;;chr19:13135582..13135600,+!p3@NFIX!1.45!27.26!NFIX;;chr7:27205106..27205134,-!p2@HOXA9!1.42!25.47!HOXA9;;chr1:214161328..214161348,+!p2@PROX1!1.42!25.27!PROX1;;chr1:209979467..209979494,-!p1@IRF6!1.41!27.46!IRF6;;chr20:2673383..2673441,+!p1@EBF4!1.40!37.60!EBF4;;chr7:27239703..27239715,-!p1@HOXA13!1.40!24.27!HOXA13;;chr2:2334997..2335053,-!p1@MYT1L!1.40!24.27!MYT1L;;chr18:52989031..52989079,-!p2@TCF4!1.39!54.91!TCF4;;chr19:12163769..12163798,-!p1@ZNF878!1.39!30.04!ZNF878;;chr21:38071430..38071456,+!p1@SIM2!1.39!23.28!SIM2;;chr1:244214577..244214593,+!p1@ZNF238!1.36!21.88!ZNF238;;chr2:200323414..200323455,-!p1@SATB2!1.32!41.58!SATB2;;chr14:38064590..38064606,-!p2@FOXA1!1.32!19.90!FOXA1;;chr8:53166916..53166925,-!p10@ST18!1.31!19.30!ST18;;chr5:92918894..92918912,+!p2@NR2F1!1.30!61.67!NR2F1;;chr8:60031762..60031803,-!p3@TOX!1.30!27.06!TOX;;chr2:219849784..219849798,-!p5@FEV!1.30!18.90!FEV;;chr8:60031809..60031835,-!p4@TOX!1.29!23.48!TOX;;chr13:72441506..72441562,-!p3@DACH1!1.29!18.70!DACH1;;chr2:239148671..239148686,-!p1@HES6!1.27!63.47!HES6;;chr6:135502501..135502546,+!p1@MYB!1.27!20.89!MYB;;chr1:214161358..214161377,+!p3@PROX1!1.27!17.71!PROX1;;chr2:219849644..219849655,-!p7@FEV!1.27!17.51!FEV;;chr17:46675558..46675577,-!p2@HOXB6!1.26!17.31!HOXB6;;chr17:48046642..48046667,+!p3@DLX4!1.26!17.31!DLX4;;chr18:53089538..53089578,-!p14@TCF4!1.26!17.11!TCF4;;chr1:216896801..216896812,-!p5@ESRRG!1.26!17.11!ESRRG;;chr11:2291849..2291858,-!p4@ASCL2!1.26!17.11!ASCL2;;chr6:21597765..21597779,+!p2@SOX4!1.25!131.90!SOX4;;chr17:7197911..7197964,-!p1@YBX2!1.25!16.71!YBX2;;chr17:48046671..48046697,+!p4@DLX4!1.24!16.51!DLX4;;chr18:55102598..55102623,+!p1@ONECUT2!1.24!16.31!ONECUT2;;chr20:39317868..39317884,-!p1@MAFB!1.23!187.41!MAFB;;chr7:27903656..27903678,-!p11@JAZF1!1.23!16.12!JAZF1;;chr2:200322723..200322739,-!p6@SATB2!1.23!15.92!SATB2;;chr17:45928521..45928539,-!p1@SP6!1.22!15.72!SP6;;chr2:219849805..219849819,-!p3@FEV!1.22!15.52!FEV;;chr8:60031682..60031710,-!p2@TOX!1.21!24.87!TOX;;chrX:84499081..84499115,+!p2@ZNF711!1.21!22.28!ZNF711;;chr13:72440901..72440968,-!p4@DACH1!1.21!15.32!DACH1;;chr8:53161967..53161974,-!p11@ST18!1.21!15.32!ST18;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@@ Line 40: / Line 40: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520gastrointestinal%2520carcinoma%2520cell%2520line%253aECC10.CNhs11736.10610-108F7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520gastrointestinal%2520carcinoma%2520cell%2520line%253aECC10.CNhs11736.10610-108F7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520gastrointestinal%2520carcinoma%2520cell%2520line%253aECC10.CNhs11736.10610-108F7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/small%2520cell%2520gastrointestinal%2520carcinoma%2520cell%2520line%253aECC10.CNhs11736.10610-108F7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/small%2520cell%2520gastrointestinal%2520carcinoma%2520cell%2520line%253aECC10.CNhs11736.10610-108F7.hg38.nobarcode.ctss.bed.gz
 |id=FF:10610-108F7
 |is_a=EFO:0002091;;FF:0000210;;FF:0100297;;FF:0101533
 |is_obsolete=
 |library_id=CNhs11736
-|library_id_phase_based=1:CNhs11736
+|library_id_phase_based=2:CNhs11736
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10610
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10610
 |name=small cell gastrointestinal carcinoma cell line:ECC10
 |namespace=FANTOM5
@@ Line 50: / Line 59: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11736,LSID819,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10610-108F7;search_select_hide=table117:FF:10610-108F7
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FF:10610-108F7: Difference between revisions

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Latest revision as of 14:31, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0