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{{f5samples
{{f5samples
|id=FF:10610-108F7
|DRA_sample_Accession=CAGE@SAMD00005425
|name=small cell gastrointestinal carcinoma cell line:ECC10
|accession_numbers=CAGE;DRX008005;DRR008877;DRZ000302;DRZ001687;DRZ011652;DRZ013037
|sample_id=10610
|rna_tube_id=108F7
|rna_box=108
|rna_position=F7
|sample_cell_lot=
|sample_cell_catalog=RCB0983
|sample_company=RIKEN Bioresource centre
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=stomach
|sample_donor(cell lot)=
|sample_sex=unknown
|sample_age=unknown
|sample_ethnicity=J
|rna_rin=
|rna_od260/230=2.13
|rna_od260/280=2.13
|sample_cell_type=unclassifiable
|sample_cell_line=ECC10
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=small cell gastrointestinal carcinoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=98.754
|rna_concentration=1.31672
|sample_note=
|profile_hcage=CNhs11736,LSID819,release009,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_disease_facet=DOID:0050686,DOID:0050687,DOID:14566,DOID:162,DOID:305,DOID:3119,DOID:4
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
|sample_description=
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:3119
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0101533
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr13:72441315..72441454,-!p1@DACH1!2.57!719.01!DACH1;;chr17:48072574..48072597,-!p1@DLX3!2.43!270.77!DLX3;;chr2:182545234..182545252,-!p1@NEUROD1!2.39!242.72!NEUROD1;;chr1:216896752..216896778,-!p1@ESRRG!2.36!228.79!ESRRG;;chr2:166326200..166326216,+!p1@CSRNP3!2.23!240.53!CSRNP3;;chr1:214161272..214161322,+!p1@PROX1!2.14!190.79!PROX1;;chr4:4861385..4861398,+!p1@MSX1!2.12!368.46!MSX1;;chr8:53166899..53166914,-!p3@ST18!2.06!113.00!ST18;;chr20:20348740..20348757,+!p1@INSM1!2.03!106.84!INSM1;;chr2:172949484..172949522,+!p1@DLX1!2.03!106.04!DLX1;;chr2:172950227..172950249,+!p2@DLX1!1.93!84.75!DLX1;;chr11:2292226..2292270,-!p1@ASCL2!1.91!80.58!ASCL2;;chr14:38064429..38064486,-!p1@FOXA1!1.88!74.21!FOXA1;;chr13:72441074..72441172,-!p2@DACH1!1.87!73.81!DACH1;;chr2:200322654..200322707,-!p2@SATB2!1.86!102.66!SATB2;;chr17:37764128..37764258,-!p1@NEUROD2!1.86!71.22!NEUROD2;;chr2:172967621..172967637,-!p1@DLX2!1.85!180.05!DLX2;;chr2:172967242..172967265,-!p2@DLX2!1.84!67.64!DLX2;;chr7:27224795..27224840,-!p2@HOXA11!1.78!59.09!HOXA11;;chr8:53162037..53162058,-!p5@ST18!1.77!58.09!ST18;;chr6:10412600..10412637,-!p1@TFAP2A!1.75!91.12!TFAP2A;;chr1:216896780..216896800,-!p2@ESRRG!1.75!55.51!ESRRG;;chr4:109089901..109089930,-!p3@LEF1!1.73!52.92!LEF1;;chr2:85981107..85981120,+!p3@ATOH8!1.70!49.14!ATOH8;;chr2:172967276..172967296,-!p3@DLX2!1.70!48.74!DLX2;;chr7:27239740..27239759,-!p2@HOXA13!1.69!47.75!HOXA13;;chr2:172967353..172967365,-!p5@DLX2!1.68!46.36!DLX2;;chr18:53089453..53089482,-!p11@TCF4!1.67!45.76!TCF4;;chr7:27224842..27224872,-!p1@HOXA11!1.67!45.56!HOXA11;;chr18:53089493..53089517,-!p15@TCF4!1.62!40.59!TCF4;;chr7:27205136..27205164,-!p1@HOXA9!1.62!40.39!HOXA9;;chr5:92918919..92918942,+!p1@NR2F1!1.61!172.29!NR2F1;;chr11:63684602..63684664,-!p1@RCOR2!1.61!76.79!RCOR2;;chr11:2291814..2291825,-!p2@ASCL2!1.60!38.80!ASCL2;;chr20:22565370..22565388,-!p2@FOXA2!1.57!36.21!FOXA2;;chr7:27213893..27213954,-!p1@HOXA10!1.57!35.81!HOXA10;;chr8:93107451..93107468,-!p2@RUNX1T1!1.52!31.83!RUNX1T1;;chr2:172967323..172967336,-!p4@DLX2!1.51!31.63!DLX2;;chr4:109090075..109090095,-!p2@LEF1!1.51!31.43!LEF1;;chr19:13134772..13134822,+!p2@NFIX!1.50!44.56!NFIX;;chr2:219849897..219849928,-!p2@FEV!1.50!30.64!FEV;;chr5:174151612..174151633,+!p2@MSX2!1.50!30.64!MSX2;;chr6:21593973..21593988,+!p1@SOX4!1.49!1016.44!SOX4;;chr7:73038839..73038862,-!p1@MLXIPL!1.49!30.24!MLXIPL;;chr18:72922743..72922761,+!p3@TSHZ1!1.48!94.10!TSHZ1;;chr7:27192185..27192209,-!p1@HOXA3!1.48!29.44!HOXA3;;chr5:172662197..172662216,-!p1@NKX2-5!1.48!29.25!NKX2-5;;chr8:93107696..93107716,-!p8@RUNX1T1!1.48!29.25!RUNX1T1;;chr5:174151553..174151610,+!p1@MSX2!1.46!45.56!MSX2;;chr6:10412392..10412409,-!p4@TFAP2A!1.46!31.43!TFAP2A;;chr1:6479968..6479986,-!p1@HES2!1.46!27.65!HES2;;chr18:53089521..53089533,-!p22@TCF4!1.45!27.26!TCF4;;chr19:13135582..13135600,+!p3@NFIX!1.45!27.26!NFIX;;chr7:27205106..27205134,-!p2@HOXA9!1.42!25.47!HOXA9;;chr1:214161328..214161348,+!p2@PROX1!1.42!25.27!PROX1;;chr1:209979467..209979494,-!p1@IRF6!1.41!27.46!IRF6;;chr20:2673383..2673441,+!p1@EBF4!1.40!37.60!EBF4;;chr7:27239703..27239715,-!p1@HOXA13!1.40!24.27!HOXA13;;chr2:2334997..2335053,-!p1@MYT1L!1.40!24.27!MYT1L;;chr18:52989031..52989079,-!p2@TCF4!1.39!54.91!TCF4;;chr19:12163769..12163798,-!p1@ZNF878!1.39!30.04!ZNF878;;chr21:38071430..38071456,+!p1@SIM2!1.39!23.28!SIM2;;chr1:244214577..244214593,+!p1@ZNF238!1.36!21.88!ZNF238;;chr2:200323414..200323455,-!p1@SATB2!1.32!41.58!SATB2;;chr14:38064590..38064606,-!p2@FOXA1!1.32!19.90!FOXA1;;chr8:53166916..53166925,-!p10@ST18!1.31!19.30!ST18;;chr5:92918894..92918912,+!p2@NR2F1!1.30!61.67!NR2F1;;chr8:60031762..60031803,-!p3@TOX!1.30!27.06!TOX;;chr2:219849784..219849798,-!p5@FEV!1.30!18.90!FEV;;chr8:60031809..60031835,-!p4@TOX!1.29!23.48!TOX;;chr13:72441506..72441562,-!p3@DACH1!1.29!18.70!DACH1;;chr2:239148671..239148686,-!p1@HES6!1.27!63.47!HES6;;chr6:135502501..135502546,+!p1@MYB!1.27!20.89!MYB;;chr1:214161358..214161377,+!p3@PROX1!1.27!17.71!PROX1;;chr2:219849644..219849655,-!p7@FEV!1.27!17.51!FEV;;chr17:46675558..46675577,-!p2@HOXB6!1.26!17.31!HOXB6;;chr17:48046642..48046667,+!p3@DLX4!1.26!17.31!DLX4;;chr18:53089538..53089578,-!p14@TCF4!1.26!17.11!TCF4;;chr1:216896801..216896812,-!p5@ESRRG!1.26!17.11!ESRRG;;chr11:2291849..2291858,-!p4@ASCL2!1.26!17.11!ASCL2;;chr6:21597765..21597779,+!p2@SOX4!1.25!131.90!SOX4;;chr17:7197911..7197964,-!p1@YBX2!1.25!16.71!YBX2;;chr17:48046671..48046697,+!p4@DLX4!1.24!16.51!DLX4;;chr18:55102598..55102623,+!p1@ONECUT2!1.24!16.31!ONECUT2;;chr20:39317868..39317884,-!p1@MAFB!1.23!187.41!MAFB;;chr7:27903656..27903678,-!p11@JAZF1!1.23!16.12!JAZF1;;chr2:200322723..200322739,-!p6@SATB2!1.23!15.92!SATB2;;chr17:45928521..45928539,-!p1@SP6!1.22!15.72!SP6;;chr2:219849805..219849819,-!p3@FEV!1.22!15.52!FEV;;chr8:60031682..60031710,-!p2@TOX!1.21!24.87!TOX;;chrX:84499081..84499115,+!p2@ZNF711!1.21!22.28!ZNF711;;chr13:72440901..72440968,-!p4@DACH1!1.21!15.32!DACH1;;chr8:53161967..53161974,-!p11@ST18!1.21!15.32!ST18;;chr12:115121962..115121987,-!p1@TBX3!1.19!119.77!TBX3;;chr8:53162019..53162028,-!p12@ST18!1.19!14.52!ST18;;chr2:16080659..16080685,+!p1@MYCN!1.18!14.13!MYCN;;chr2:8822176..8822196,+!p1@ID2!1.17!1900.58!ID2;;chr7:156803329..156803362,-!p1@MNX1!1.17!13.93!MNX1;;chr18:55102628..55102646,+!p2@ONECUT2!1.17!13.93!ONECUT2;;chr20:22564895..22564910,-!p1@FOXA2!1.16!13.53!FOXA2;;chr17:41622765..41622821,-!p2@ETV4!1.15!19.90!ETV4;;chr6:135502408..135502459,+!p2@MYB!1.15!15.32!MYB;;chr19:19976683..19976709,+!p1@ZNF253!1.14!56.10!ZNF253;;chr8:60031619..60031676,-!p1@TOX!1.14!27.65!TOX;;chr8:11561684..11561751,+!p1@GATA4!1.14!12.93!GATA4;;chr19:50832895..50832928,+!p3@NR1H2!1.14!12.93!NR1H2;;chr7:27196217..27196246,-!p2@HOXA7!1.14!12.73!HOXA7;;chr4:109089996..109090012,-!p5@LEF1!1.14!12.73!LEF1;;chr11:2292201..2292212,-!p3@ASCL2!1.14!12.73!ASCL2;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.13!26.46!ZNF395;;chr2:25475120..25475176,-!p2@DNMT3A!1.12!16.51!DNMT3A;;chr2:172967017..172967029,-!p8@DLX2!1.12!12.14!DLX2;;chr2:182545282..182545294,-!p2@NEUROD1!1.12!12.14!NEUROD1;;chr2:60780753..60780800,-!p1@BCL11A!1.11!58.69!BCL11A;;chr5:124084493..124084524,-!p2@ZNF608!1.11!26.66!ZNF608;;chr2:182545296..182545307,-!p3@NEUROD1!1.11!11.94!NEUROD1;;chr18:72922811..72922827,+!p1@TSHZ1!1.10!57.89!TSHZ1;;chr6:21597600..21597664,+!p3@SOX4!1.10!19.10!SOX4;;chr1:41827095..41827155,+!p1@FOXO6!1.10!15.92!FOXO6;;chr17:41623692..41623715,-!p1@ETV4!1.09!48.94!ETV4;;chr6:10415484..10415508,-!p3@TFAP2A!1.09!11.34!TFAP2A;;chr6:28321909..28321965,-!p3@ZNF323!1.09!11.34!ZNF323;;chr16:73092898..73092931,-!p1@ZFHX3!1.08!42.77!ZFHX3;;chr11:66188503..66188511,+!p1@NPAS4!1.08!11.14!NPAS4;;chr4:109090408..109090441,-!p21@LEF1!1.08!11.14!LEF1;;chr11:31832807..31832823,-!p4@PAX6!1.08!10.94!PAX6;;chr2:219849692..219849702,-!p11@FEV!1.07!10.74!FEV;;chr18:52989001..52989030,-!p10@TCF4!1.06!11.54!TCF4;;chr2:85981969..85982019,+!p6@ATOH8!1.06!10.54!ATOH8;;chr19:45971246..45971265,+!p1@FOSB!1.05!190.40!FOSB;;chr9:14314131..14314147,-!p2@NFIB!1.05!58.09!NFIB;;chr7:149470641..149470694,-!p1@ZNF467!1.05!46.36!ZNF467;;chr19:33793430..33793447,-!p1@CEBPA!1.05!43.77!CEBPA;;chr6:21597514..21597578,+!p4@SOX4!1.05!17.51!SOX4;;chr6:21597370..21597408,+!p5@SOX4!1.05!16.71!SOX4;;chr3:114819101..114819121,-!p7@ZBTB20!1.05!10.15!ZBTB20;;chr12:115122318..115122331,-!p2@TBX3!1.05!10.15!TBX3;;chr5:321810..321877,+!p1@AHRR!1.04!31.83!AHRR;;chr19:11750566..11750627,+!p1@ZNF833P!1.04!13.53!ZNF833P;;chr2:172967225..172967232,-!p7@DLX2!1.04!9.95!DLX2;;chr2:200322229..200322251,-!p3@SATB2!1.04!9.95!SATB2;;chr8:22550982..22550999,-!p1@EGR3!1.03!27.65!EGR3;;chr3:40547564..40547616,+!p1@ZNF620!1.03!13.93!ZNF620;;chr19:38720294..38720348,-!p1@DPF1!1.02!11.94!DPF1;;chr6:20402102..20402152,+!p1@E2F3!1.01!38.40!E2F3;;chr1:214161619..214161629,+!p5@PROX1!1.01!9.35!PROX1;;chr5:92918768..92918783,+!p8@NR2F1!1.01!9.15!NR2F1;;chr6:91006518..91006570,-!p1@BACH2!1.00!20.89!BACH2;;chr8:116681409..116681431,-!p2@TRPS1!0.99!24.47!TRPS1;;chr3:44626446..44626477,+!p1@ZNF660!0.99!15.92!ZNF660;;chr2:85981222..85981259,+!p2@ATOH8!0.99!14.52!ATOH8;;chr15:80696703..80696754,+!p1@ARNT2!0.99!11.74!ARNT2;;chr2:172967266..172967271,-!p6@DLX2!0.99!8.75!DLX2;;chr11:31832862..31832884,-!p2@PAX6!0.99!8.75!PAX6;;chr1:61330997..61331017,+!p17@NFIA!0.98!8.55!NFIA;;chr17:46675420..46675465,-!p3@HOXB6!0.97!9.75!HOXB6;;chr13:72441289..72441300,-!p13@DACH1!0.97!8.36!DACH1;;chr1:10856639..10856662,-!p2@CASZ1!0.97!8.36!CASZ1;;chr21:38071403..38071428,+!p2@SIM2!0.97!8.36!SIM2;;chr20:30193083..30193098,+!p1@ID1!0.96!670.46!ID1;;chr10:77161504..77161530,-!p1@ZNF503!0.96!111.61!ZNF503;;chr7:64838786..64838809,+!p2@ZNF92!0.96!47.15!ZNF92;;chr7:64023410..64023428,-!p2@ZNF680!0.96!13.13!ZNF680;;chr1:244219775..244219893,+!p2@ZNF238!0.96!11.34!ZNF238;;chr21:38071462..38071474,+!p3@SIM2!0.96!8.16!SIM2;;chr7:27190547..27190591,-!p1@HOXA6!0.96!8.16!HOXA6;;chr2:157189180..157189290,-!p1@NR4A2!0.95!42.38!NR4A2;;chr19:21512115..21512135,-!p3@ZNF708!0.95!16.51!ZNF708;;chr2:172949532..172949541,+!p6@DLX1!0.95!7.96!DLX1;;chr6:10412576..10412599,-!p5@TFAP2A!0.95!7.96!TFAP2A;;chr15:68115672..68115691,+!p1@SKOR1!0.94!7.76!SKOR1;;chr17:8027418..8027432,-!p1@HES7!0.94!7.76!HES7;;chr1:153940354..153940395,+!p1@CREB3L4!0.93!31.24!CREB3L4;;chr7:64254834..64254854,+!p2@ZNF138!0.93!13.93!ZNF138;;chr9:14314106..14314119,-!p5@NFIB!0.93!13.93!NFIB;;chr10:48355030..48355090,+!p1@ZNF488!0.93!9.75!ZNF488;;chr11:31832658..31832681,-!p1@PAX6!0.93!7.56!PAX6;;chr1:217250308..217250349,-!p9@ESRRG!0.93!7.56!ESRRG;;chr5:92918789..92918800,+!p12@NR2F1!0.93!7.56!NR2F1;;chr2:200322711..200322722,-!p10@SATB2!0.93!7.56!SATB2;;chr3:114819047..114819069,-!p16@ZBTB20!0.93!7.56!ZBTB20;;chr3:114819073..114819100,-!p10@ZBTB20!0.93!7.56!ZBTB20;;chr18:72922777..72922808,+!p2@TSHZ1!0.92!35.61!TSHZ1;;chr3:114819124..114819200,-!p3@ZBTB20!0.92!17.71!ZBTB20;;chr10:70320074..70320106,+!p1@TET1!0.92!15.12!TET1;;chr19:12551785..12551823,-!p1@ZNF443!0.92!12.14!ZNF443;;chrX:844989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CC2;;chr20:306221..306232,+!p4@SOX12!0.44!2.59!SOX12;;chr6:41514178..41514192,+!p4@FOXP4!0.44!2.19!FOXP4;;chr20:49547910..49547988,-!p1@ADNP!0.43!91.32!ADNP;;chr8:128748308..128748324,+!p2@MYC!0.43!68.24!MYC;;chr7:86781734..86781777,+!p1@DMTF1!0.43!44.76!DMTF1;;chr19:35168567..35168620,+!p1@ZNF302!0.43!27.85!ZNF302;;chr2:113033164..113033219,+!p1@ZC3H6!0.43!20.09!ZC3H6;;chr19:58740266..58740297,+!p1@ZNF544!0.43!17.31!ZNF544;;chr19:6110474..6110551,-!p1@RFX2!0.43!14.32!RFX2;;chr19:47617013..47617069,-!p2@ZC3H4!0.43!14.13!ZC3H4;;chr19:52643169..52643199,-!p1@ZNF616!0.43!13.93!ZNF616;;chr19:58258202..58258226,+!p3@ZNF776!0.43!10.94!ZNF776;;chr10:96122645..96122675,-!p2@NOC3L!0.43!10.94!NOC3L;;chr1:40915725..40915808,+!p1@ZNF643!0.43!6.57!ZNF643;;chr1:42800848..42800859,-!p2@FOXJ3!0.43!6.17!FOXJ3;;chr19:37862054..37862110,+!p1@ZNF527!0.43!6.17!ZNF527;;chr22:20748456..20748488,+!p2@ZNF74!0.43!5.77!ZNF74;;chr15:96874244..96874259,+!p5@NR2F2!0.43!5.17!NR2F2;;chr19:52408227..52408243,-!p2@ZNF649!0.43!4.77!ZNF649;;chr1:151032922..151032951,+!p2@MLLT11!0.43!3.38!MLLT11;;chr18:5296138..5296159,-!p3@ZFP161!0.43!3.38!ZFP161;;chr8:145980968..145980996,-!p2@ZNF251!0.43!2.98!ZNF251;;chr3:71632894..71632909,-!p17@FOXP1!0.43!2.79!FOXP1;;chr3:14989024..14989041,+!p3@NR2C2!0.43!2.59!NR2C2;;chr8:81398478..81398495,+!p7@ZBTB10!0.43!2.59!ZBTB10;;chr7:148844205..148844236,+!p5@ZNF398!0.43!2.19!ZNF398;;chr1:153895377..153895465,-!p1@GATAD2B!0.42!68.64!GATAD2B;;chr17:73780879..73780963,+!p1@UNK!0.42!39.79!UNK;;chr20:42295745..42295765,+!p1@MYBL2!0.42!38.99!MYBL2;;chr8:28747884..28747938,+!p1@HMBOX1!0.42!29.84!HMBOX1;;chr19:21203451..21203475,+!p1@ZNF430!0.42!23.68!ZNF430;;chr19:9251081..9251110,+!p1@ZNF317!0.42!22.88!ZNF317;;chr20:18269151..18269212,+!p1@ZNF133!0.42!19.50!ZNF133;;chr20:2489542..2489583,-!p1@ZNF343!0.42!15.72!ZNF343;;chr15:60884706..60884743,-!p1@RORA!0.42!11.74!RORA;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.42!10.35!TAL1;;chr19:38270215..38270251,-!p1@ZNF573!0.42!9.15!ZNF573;;chr1:161015676..161015694,-!p3@USF1!0.42!8.55!USF1;;chr3:114866084..114866118,-!p2@ZBTB20!0.42!7.96!ZBTB20;;chr19:36705617..36705644,+!p4@ZNF146!0.42!6.17!ZNF146;;chr19:36545291..36545314,-!p2@THAP8!0.42!5.17!THAP8;;chr13:74708475..74708499,-!p5@KLF12!0.42!4.77!KLF12;;chr19:9420483..9420530,-!p@chr19:9420483..9420530,-!0.42!3.98!ZNF699;;chr13:46543725..46543747,-!p2@ZC3H13!0.42!3.78!ZC3H13;;chr9:14082760..14082775,-!p6@NFIB!0.42!3.18!NFIB;;chr7:21467150..21467172,+!p5@SP4!0.42!2.19!SP4;;chr8:81398511..81398523,+!p8@ZBTB10!0.42!2.19!ZBTB10;;chr15:37392576..37392589,-!p12@MEIS2!0.42!2.19!MEIS2;;chr18:32924372..32924430,-!p1@ZNF24!0.41!70.83!ZNF24;;chr1:211432700..211432753,+!p1@RCOR3!0.41!42.97!RCOR3;;chr6:28109608..28109693,+!p1@ZNF192!0.41!38.60!ZNF192;;chr9:14314566..14314618,-!p1@NFIB!0.41!27.46!NFIB;;chr19:57946684..57946723,+!p1@ZNF749!0.41!25.47!ZNF749;;chr12:51477368..51477386,-!p1@CSRNP2!0.41!25.27!CSRNP2;;chr18:51750839..51750885,-!p2@MBD2!0.41!22.88!MBD2;;chr3:40566428..40566480,+!p1@ZNF621!0.41!18.10!ZNF621;;chr15:96873984..96873999,+!p3@NR2F2!0.41!16.71!NR2F2;;chr8:144329092..144329140,+!p1@ZFP41!0.41!16.31!ZFP41;;chr19:52408257..52408278,-!p1@ZNF649!0.41!14.72!ZNF649;;chr19:19843900..19843928,-!p1@ZNF14!0.41!11.14!ZNF14;;chr18:5296001..5296045,-!p1@ZFP161!0.41!8.36!ZFP161;;chr15:71184724..71184778,-!p1@THAP10!0.41!8.16!THAP10;;chr19:12146483..12146546,-!p1@ZNF433!0.41!7.96!ZNF433;;chr19:53360870..53360873,-!p1@ZNF468!0.41!7.96!ZNF468;;chr19:44809143..44809187,-!p1@ZNF235!0.41!6.37!ZNF235;;chr7:99613250..99613264,+!p2@ZKSCAN1!0.41!6.17!ZKSCAN1;;chr19:54041382..54041437,+!p3@ZNF331!0.41!5.97!ZNF331;;chr6:106534230..106534254,+!p2@PRDM1!0.41!5.17!PRDM1;;chr19:35168633..35168652,+!p2@ZNF302!0.41!4.97!ZNF302;;chr1:151032833..151032850,+!p3@MLLT11!0.41!4.58!MLLT11;;chr12:3068466..3068495,+!p3@TEAD4!0.41!4.38!TEAD4;;chr12:133706820..133706881,-!p1@ZNF891!0.41!4.18!ZNF891;;chr17:38219184..38219195,+!p3@THRA!0.41!3.98!THRA;;chr7:86781778..86781789,+!p4@DMTF1!0.41!3.98!DMTF1;;chr1:151032142..151032195,+!p5@MLLT11!0.41!3.78!MLLT11;;chr19:21324863..21324874,+!p2@ZNF431!0.41!3.38!ZNF431;;chr19:49140572..49140594,-!p2@DBP!0.41!2.98!DBP;;chr15:66994615..66994630,+!p3@SMAD6!0.41!2.59!SMAD6;;chr6:43337124..43337144,-!p4@ZNF318!0.41!2.59!ZNF318;;chr11:10876220..10876224,-!p3@ZBED5!0.41!1.99!ZBED5;;chr3:18466660..18466676,-!p5@SATB1!0.41!1.99!SATB1;;chr2:25565377..25565389,-!p9@DNMT3A!0.41!1.79!DNMT3A;;chr2:113057501..113057529,+!p4@ZC3H6!0.41!1.59!ZC3H6;;chr2:2330158..2330172,-!p14@MYT1L!0.41!1.59!MYT1L;;chr2:2335056..2335069,-!p11@MYT1L!0.41!1.59!MYT1L;;chr2:73144683..73144697,+!p3@EMX1!0.41!1.59!EMX1;;chr2:74740569..74740580,+!p4@TLX2!0.41!1.59!TLX2;;chr4:109089215..109089236,-!p25@LEF1!0.41!1.59!LEF1;;chr4:18022185..18022189,-!p4@LCORL!0.41!1.59!LCORL;;chr6:91006503..91006517,-!p3@BACH2!0.41!1.59!BACH2;;chr7:27196196..27196210,-!p5@HOXA7!0.41!1.59!HOXA7;;chr8:93107855..93107901,-!p12@RUNX1T1!0.41!1.59!RUNX1T1;;chr9:1050331..1050363,+!p1@DMRT2!0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|fonse_cell_line=FF:0101120,FF:0101533
|fonse_cell_line=FF:0101120,FF:0101533
|fonse_cell_line_closure=FF:0101120,FF:0101533
|fonse_cell_line_closure=FF:0101120,FF:0101533
Line 66: Line 39:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520gastrointestinal%2520carcinoma%2520cell%2520line%253aECC10.CNhs11736.10610-108F7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520gastrointestinal%2520carcinoma%2520cell%2520line%253aECC10.CNhs11736.10610-108F7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520gastrointestinal%2520carcinoma%2520cell%2520line%253aECC10.CNhs11736.10610-108F7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/small%2520cell%2520gastrointestinal%2520carcinoma%2520cell%2520line%253aECC10.CNhs11736.10610-108F7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/small%2520cell%2520gastrointestinal%2520carcinoma%2520cell%2520line%253aECC10.CNhs11736.10610-108F7.hg38.nobarcode.ctss.bed.gz
|id=FF:10610-108F7
|is_a=EFO:0002091;;FF:0000210;;FF:0100297;;FF:0101533
|is_obsolete=
|library_id=CNhs11736
|library_id_phase_based=2:CNhs11736
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10610
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10610
|name=small cell gastrointestinal carcinoma cell line:ECC10
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11736,LSID819,release009,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=108
|rna_catalog_number=
|rna_concentration=1.31672
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.13
|rna_od260/280=2.13
|rna_position=F7
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=108F7
|rna_weight_ug=98.754
|sample_age=unknown
|sample_category=cell lines
|sample_cell_catalog=RCB0983
|sample_cell_line=ECC10
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=small cell gastrointestinal carcinoma
|sample_donor(cell lot)=
|sample_ethnicity=J
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;8.69106740994447e-265!GO:0043226;organelle;1.43218727190661e-231!GO:0043229;intracellular organelle;1.04472630872205e-230!GO:0043227;membrane-bound organelle;1.15467154948572e-224!GO:0043231;intracellular membrane-bound organelle;2.01569008974945e-224!GO:0044422;organelle part;1.1930954711503e-141!GO:0044446;intracellular organelle part;6.01327953161243e-140!GO:0005737;cytoplasm;2.34828648588956e-137!GO:0005634;nucleus;1.32412211262587e-124!GO:0044237;cellular metabolic process;1.6708128688583e-99!GO:0044238;primary metabolic process;4.19602405787278e-99!GO:0032991;macromolecular complex;1.69898400111905e-95!GO:0043170;macromolecule metabolic process;7.90866793890639e-94!GO:0044444;cytoplasmic part;2.63070561325705e-92!GO:0044428;nuclear part;5.4845640059967e-83!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.1936128191724e-75!GO:0043233;organelle lumen;3.1936128191724e-75!GO:0031974;membrane-enclosed lumen;3.1936128191724e-75!GO:0030529;ribonucleoprotein complex;4.34935083063813e-75!GO:0043283;biopolymer metabolic process;5.53156598989079e-73!GO:0003723;RNA binding;6.96150260525752e-71!GO:0010467;gene expression;2.15828753313833e-70!GO:0005515;protein binding;5.04010281933158e-57!GO:0005739;mitochondrion;3.56134144541401e-56!GO:0006396;RNA processing;1.77724125158956e-52!GO:0031981;nuclear lumen;7.95717686201708e-51!GO:0003676;nucleic acid binding;1.10728813843482e-50!GO:0043234;protein complex;5.32621925490799e-50!GO:0016070;RNA metabolic process;5.57220675752835e-46!GO:0016043;cellular component organization and biogenesis;7.71331584853093e-46!GO:0016071;mRNA metabolic process;1.62906889117298e-44!GO:0005840;ribosome;2.69016713006654e-42!GO:0006259;DNA metabolic process;1.43227508783389e-41!GO:0006397;mRNA processing;3.53823343916153e-40!GO:0044429;mitochondrial part;4.12155645194161e-40!GO:0031967;organelle envelope;1.04743310317091e-39!GO:0031975;envelope;2.61726545132022e-39!GO:0006996;organelle organization and biogenesis;4.1640884103693e-39!GO:0033036;macromolecule localization;7.13878705434295e-39!GO:0008380;RNA splicing;9.86774660362737e-39!GO:0031090;organelle membrane;3.91553058105061e-38!GO:0015031;protein transport;1.15221771510508e-37!GO:0006412;translation;1.3900719816585e-37!GO:0043228;non-membrane-bound organelle;1.40354738984033e-37!GO:0043232;intracellular non-membrane-bound organelle;1.40354738984033e-37!GO:0003735;structural constituent of ribosome;1.0286263542111e-36!GO:0008104;protein localization;2.76865966102411e-34!GO:0005654;nucleoplasm;8.64118737673114e-34!GO:0045184;establishment of protein localization;1.94226674999182e-33!GO:0007049;cell cycle;3.73852945363573e-33!GO:0033279;ribosomal subunit;5.41357009257117e-33!GO:0046907;intracellular transport;6.23506607644015e-33!GO:0000166;nucleotide binding;3.27144933261909e-29!GO:0019538;protein metabolic process;6.86453333042595e-29!GO:0044451;nucleoplasm part;7.50702038557431e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.64352319373946e-27!GO:0019866;organelle inner membrane;2.87350394390871e-27!GO:0044249;cellular biosynthetic process;3.81934879212025e-27!GO:0005829;cytosol;9.58202648354424e-27!GO:0044267;cellular protein metabolic process;9.98379262452021e-27!GO:0005740;mitochondrial envelope;3.65993055254069e-26!GO:0006886;intracellular protein transport;3.76341275400825e-26!GO:0044260;cellular macromolecule metabolic process;4.01174344477958e-26!GO:0005681;spliceosome;1.00920899644262e-25!GO:0065003;macromolecular complex assembly;1.09437871128762e-25!GO:0009058;biosynthetic process;5.32015693025357e-25!GO:0031966;mitochondrial membrane;6.32317296458064e-25!GO:0006974;response to DNA damage stimulus;7.47630056125121e-25!GO:0009059;macromolecule biosynthetic process;1.82853470135595e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.91105329544836e-24!GO:0005743;mitochondrial inner membrane;2.3158623357172e-24!GO:0022402;cell cycle process;6.24254809958725e-24!GO:0051649;establishment of cellular localization;9.01125115156312e-24!GO:0005694;chromosome;4.04669478497129e-23!GO:0051641;cellular localization;4.8609472514396e-23!GO:0016462;pyrophosphatase activity;3.63889860750585e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.93833278763225e-22!GO:0006281;DNA repair;4.5505076932931e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;5.1651216872606e-22!GO:0022607;cellular component assembly;5.50327854870057e-22!GO:0017111;nucleoside-triphosphatase activity;1.00597963995887e-21!GO:0006119;oxidative phosphorylation;1.04399529486423e-21!GO:0032553;ribonucleotide binding;4.6893933573225e-21!GO:0032555;purine ribonucleotide binding;4.6893933573225e-21!GO:0000278;mitotic cell cycle;1.18663340945612e-20!GO:0006260;DNA replication;4.87515057510403e-20!GO:0044445;cytosolic part;7.537299883502e-20!GO:0017076;purine nucleotide binding;1.12229690740364e-19!GO:0044427;chromosomal part;1.29113355301734e-19!GO:0051276;chromosome organization and biogenesis;4.55785265852688e-19!GO:0008134;transcription factor binding;1.66830619962141e-18!GO:0044455;mitochondrial membrane part;2.60912935623206e-18!GO:0005524;ATP binding;4.66304599394941e-18!GO:0015934;large ribosomal subunit;7.66324797841042e-18!GO:0031980;mitochondrial lumen;8.90939431739677e-18!GO:0005759;mitochondrial matrix;8.90939431739677e-18!GO:0051301;cell division;1.60747507367176e-17!GO:0016874;ligase activity;1.74806735822395e-17!GO:0032559;adenyl ribonucleotide binding;1.90587837198069e-17!GO:0019222;regulation of metabolic process;2.55545232413911e-17!GO:0022618;protein-RNA complex assembly;3.22408446181328e-17!GO:0006457;protein folding;5.71755082898504e-17!GO:0009719;response to endogenous stimulus;7.20101874946463e-17!GO:0022403;cell cycle phase;1.02238830086288e-16!GO:0031965;nuclear membrane;2.02416510622009e-16!GO:0015935;small ribosomal subunit;3.38507263187786e-16!GO:0006512;ubiquitin cycle;4.24790515323311e-16!GO:0005746;mitochondrial respiratory chain;4.98709506145729e-16!GO:0030554;adenyl nucleotide binding;5.72737294385483e-16!GO:0000087;M phase of mitotic cell cycle;5.85896628786784e-16!GO:0005730;nucleolus;6.13026008963351e-16!GO:0007067;mitosis;7.22766261208648e-16!GO:0006350;transcription;1.10049058273106e-15!GO:0050794;regulation of cellular process;1.90926613609512e-15!GO:0006325;establishment and/or maintenance of chromatin architecture;5.26121270487367e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;5.98436109962642e-15!GO:0000375;RNA splicing, via transesterification reactions;5.98436109962642e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.98436109962642e-15!GO:0031323;regulation of cellular metabolic process;6.21916541907664e-15!GO:0050136;NADH dehydrogenase (quinone) activity;6.60161866073445e-15!GO:0003954;NADH dehydrogenase activity;6.60161866073445e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.60161866073445e-15!GO:0015630;microtubule cytoskeleton;7.16307463328181e-15!GO:0016887;ATPase activity;8.05004539468131e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.00968089649191e-14!GO:0006323;DNA packaging;2.50993099516294e-14!GO:0005635;nuclear envelope;3.17347333214156e-14!GO:0006605;protein targeting;4.25219446059934e-14!GO:0012505;endomembrane system;5.94641161840715e-14!GO:0006366;transcription from RNA polymerase II promoter;6.5588484516695e-14!GO:0032774;RNA biosynthetic process;7.58647044266364e-14!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.87638244234765e-14!GO:0042623;ATPase activity, coupled;1.13304257931912e-13!GO:0006351;transcription, DNA-dependent;1.16878413877201e-13!GO:0044453;nuclear membrane part;1.21344084609775e-13!GO:0000279;M phase;1.83748978393384e-13!GO:0016604;nuclear body;1.98425537291891e-13!GO:0010468;regulation of gene expression;2.75882382140381e-13!GO:0042775;organelle ATP synthesis coupled electron transport;3.29301652283263e-13!GO:0042773;ATP synthesis coupled electron transport;3.29301652283263e-13!GO:0008135;translation factor activity, nucleic acid binding;4.07892338697144e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.31894841187133e-13!GO:0030964;NADH dehydrogenase complex (quinone);5.31235065905611e-13!GO:0045271;respiratory chain complex I;5.31235065905611e-13!GO:0005747;mitochondrial respiratory chain complex I;5.31235065905611e-13!GO:0044265;cellular macromolecule catabolic process;7.89223282520963e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.8481360840771e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;2.27023356890327e-12!GO:0006511;ubiquitin-dependent protein catabolic process;2.7196485609476e-12!GO:0019941;modification-dependent protein catabolic process;3.0939537622025e-12!GO:0043632;modification-dependent macromolecule catabolic process;3.0939537622025e-12!GO:0016568;chromatin modification;4.17680758266625e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.58573987748567e-12!GO:0044257;cellular protein catabolic process;5.28616118365452e-12!GO:0000502;proteasome complex (sensu Eukaryota);5.48299630443993e-12!GO:0045449;regulation of transcription;7.21302122989892e-12!GO:0051726;regulation of cell cycle;7.55170033176916e-12!GO:0051082;unfolded protein binding;8.52473560006989e-12!GO:0048770;pigment granule;1.10055710927444e-11!GO:0042470;melanosome;1.10055710927444e-11!GO:0006403;RNA localization;1.1619829368367e-11!GO:0004386;helicase activity;1.28956467525188e-11!GO:0016192;vesicle-mediated transport;1.65471804729332e-11!GO:0050657;nucleic acid transport;1.71571583280975e-11!GO:0051236;establishment of RNA localization;1.71571583280975e-11!GO:0050658;RNA transport;1.71571583280975e-11!GO:0000074;regulation of progression through cell cycle;2.12574548867443e-11!GO:0005761;mitochondrial ribosome;2.82956487515471e-11!GO:0000313;organellar ribosome;2.82956487515471e-11!GO:0003712;transcription cofactor activity;3.42142707512364e-11!GO:0050789;regulation of biological process;3.7150600561e-11!GO:0016607;nuclear speck;4.00631077405819e-11!GO:0006913;nucleocytoplasmic transport;4.01118387745202e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.52422482998046e-11!GO:0043285;biopolymer catabolic process;5.0924924611455e-11!GO:0006355;regulation of transcription, DNA-dependent;5.472698214159e-11!GO:0042254;ribosome biogenesis and assembly;5.98145254000624e-11!GO:0005643;nuclear pore;6.74826550205568e-11!GO:0051169;nuclear transport;8.08745469186065e-11!GO:0043412;biopolymer modification;8.15194053459724e-11!GO:0003743;translation initiation factor activity;1.03190857759393e-10!GO:0000785;chromatin;3.41016104220974e-10!GO:0048193;Golgi vesicle transport;3.6379345439672e-10!GO:0003677;DNA binding;3.71175512914795e-10!GO:0006261;DNA-dependent DNA replication;3.93727530149576e-10!GO:0006333;chromatin assembly or disassembly;4.23848451648493e-10!GO:0006446;regulation of translational initiation;5.33330192510805e-10!GO:0008565;protein transporter activity;6.23866542608884e-10!GO:0009057;macromolecule catabolic process;6.35682573282991e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.54695408884357e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.68556089444383e-10!GO:0051186;cofactor metabolic process;8.58573162757901e-10!GO:0044248;cellular catabolic process;9.66849715796503e-10!GO:0006413;translational initiation;1.06532134008537e-09!GO:0006163;purine nucleotide metabolic process;1.268747816271e-09!GO:0051028;mRNA transport;1.75442132690831e-09!GO:0005667;transcription factor complex;2.66764198946324e-09!GO:0030163;protein catabolic process;3.33062066550035e-09!GO:0008026;ATP-dependent helicase activity;3.34917315550494e-09!GO:0043687;post-translational protein modification;3.36692484437586e-09!GO:0006464;protein modification process;3.47232782299116e-09!GO:0009259;ribonucleotide metabolic process;4.03379358822001e-09!GO:0005874;microtubule;4.13351171320504e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.73453368363693e-09!GO:0006164;purine nucleotide biosynthetic process;7.15396329168469e-09!GO:0065002;intracellular protein transport across a membrane;1.04873501729219e-08!GO:0044432;endoplasmic reticulum part;1.13037870883814e-08!GO:0065004;protein-DNA complex assembly;1.17187548165235e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.34560391653109e-08!GO:0006399;tRNA metabolic process;1.5873435716797e-08!GO:0031324;negative regulation of cellular metabolic process;1.5873435716797e-08!GO:0009150;purine ribonucleotide metabolic process;1.5873435716797e-08!GO:0019829;cation-transporting ATPase activity;1.62229576215957e-08!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.68379046663645e-08!GO:0016564;transcription repressor activity;1.76008251760224e-08!GO:0000775;chromosome, pericentric region;1.8134752751117e-08!GO:0005783;endoplasmic reticulum;1.8449029142525e-08!GO:0000245;spliceosome assembly;1.99214018954173e-08!GO:0008639;small protein conjugating enzyme activity;2.10606106324238e-08!GO:0046930;pore complex;2.23037980256811e-08!GO:0043566;structure-specific DNA binding;3.51300698934051e-08!GO:0004842;ubiquitin-protein ligase activity;3.69651812947457e-08!GO:0017038;protein import;3.77456628467693e-08!GO:0006732;coenzyme metabolic process;4.53778664355805e-08!GO:0003697;single-stranded DNA binding;4.78016393128041e-08!GO:0009141;nucleoside triphosphate metabolic process;5.08628820114455e-08!GO:0005657;replication fork;5.40379427764424e-08!GO:0009260;ribonucleotide biosynthetic process;5.87784537158725e-08!GO:0009055;electron carrier activity;5.98021812604302e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.04327185676206e-08!GO:0015986;ATP synthesis coupled proton transport;7.0779703514771e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.0779703514771e-08!GO:0009199;ribonucleoside triphosphate metabolic process;7.36790064128801e-08!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.3757426365632e-08!GO:0009152;purine ribonucleotide biosynthetic process;8.47203847668537e-08!GO:0003682;chromatin binding;9.15950807324542e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.12210352123424e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.12210352123424e-07!GO:0019787;small conjugating protein ligase activity;1.16901516667645e-07!GO:0009060;aerobic respiration;1.18619350791906e-07!GO:0005794;Golgi apparatus;1.34076034895389e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.34529749106242e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.34529749106242e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.34529749106242e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.41676002190025e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.41676002190025e-07!GO:0032446;protein modification by small protein conjugation;1.54075651196913e-07!GO:0009892;negative regulation of metabolic process;1.71851393682856e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.17535511931595e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.17535511931595e-07!GO:0045333;cellular respiration;2.3067910012614e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.89597571207033e-07!GO:0006364;rRNA processing;2.95077255167129e-07!GO:0016567;protein ubiquitination;2.97495885009424e-07!GO:0016072;rRNA metabolic process;3.18906561356934e-07!GO:0043038;amino acid activation;3.24545157715328e-07!GO:0006418;tRNA aminoacylation for protein translation;3.24545157715328e-07!GO:0043039;tRNA aminoacylation;3.24545157715328e-07!GO:0016481;negative regulation of transcription;3.69378316511323e-07!GO:0016881;acid-amino acid ligase activity;3.79523552701654e-07!GO:0015078;hydrogen ion transmembrane transporter activity;4.15264564724586e-07!GO:0007017;microtubule-based process;4.24902345877865e-07!GO:0046034;ATP metabolic process;4.59928467746268e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.85088581472546e-07!GO:0015631;tubulin binding;4.89759226193166e-07!GO:0000075;cell cycle checkpoint;5.77109293948683e-07!GO:0007051;spindle organization and biogenesis;6.12473672164395e-07!GO:0005819;spindle;6.20051887078422e-07!GO:0006754;ATP biosynthetic process;7.1300500206704e-07!GO:0006753;nucleoside phosphate metabolic process;7.1300500206704e-07!GO:0016469;proton-transporting two-sector ATPase complex;8.75653795650036e-07!GO:0006793;phosphorus metabolic process;9.3256272107242e-07!GO:0006796;phosphate metabolic process;9.3256272107242e-07!GO:0016779;nucleotidyltransferase activity;9.32652774055675e-07!GO:0031988;membrane-bound vesicle;1.18764075323924e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.37738160509479e-06!GO:0045259;proton-transporting ATP synthase complex;1.46414622108138e-06!GO:0051188;cofactor biosynthetic process;1.68686641125839e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.95670088420531e-06!GO:0007010;cytoskeleton organization and biogenesis;2.41493371733888e-06!GO:0008094;DNA-dependent ATPase activity;2.6415142524183e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.81519917028063e-06!GO:0016023;cytoplasmic membrane-bound vesicle;3.19478768533085e-06!GO:0005813;centrosome;3.29829947065983e-06!GO:0007005;mitochondrion organization and biogenesis;3.89000130490551e-06!GO:0031982;vesicle;3.90281552686041e-06!GO:0016740;transferase activity;4.48824388388437e-06!GO:0003724;RNA helicase activity;4.69303149627917e-06!GO:0009117;nucleotide metabolic process;5.63790993800092e-06!GO:0016563;transcription activator activity;6.32328655753279e-06!GO:0005789;endoplasmic reticulum membrane;6.56023999583317e-06!GO:0005815;microtubule organizing center;6.71438882261375e-06!GO:0016310;phosphorylation;7.52332055094734e-06!GO:0006752;group transfer coenzyme metabolic process;7.57150287681216e-06!GO:0051168;nuclear export;8.64070415497874e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.54070687826528e-06!GO:0005793;ER-Golgi intermediate compartment;9.55929641381316e-06!GO:0016363;nuclear matrix;9.55929641381316e-06!GO:0006461;protein complex assembly;9.91900173559769e-06!GO:0008017;microtubule binding;1.04727097824389e-05!GO:0006606;protein import into nucleus;1.05556928790658e-05!GO:0065007;biological regulation;1.05952650674738e-05!GO:0031410;cytoplasmic vesicle;1.06090892507005e-05!GO:0051329;interphase of mitotic cell cycle;1.09536065890879e-05!GO:0006099;tricarboxylic acid cycle;1.10483079485683e-05!GO:0046356;acetyl-CoA catabolic process;1.10483079485683e-05!GO:0005768;endosome;1.1057111475006e-05!GO:0003924;GTPase activity;1.1491376656208e-05!GO:0000151;ubiquitin ligase complex;1.19650673642794e-05!GO:0009108;coenzyme biosynthetic process;1.39734554121494e-05!GO:0045786;negative regulation of progression through cell cycle;1.41962412466034e-05!GO:0003714;transcription corepressor activity;1.47071549293384e-05!GO:0051170;nuclear import;1.55838937414764e-05!GO:0003729;mRNA binding;1.80992591890511e-05!GO:0051325;interphase;1.8548088080037e-05!GO:0048471;perinuclear region of cytoplasm;1.90328751043185e-05!GO:0003899;DNA-directed RNA polymerase activity;1.97581199151969e-05!GO:0005525;GTP binding;2.2068336943404e-05!GO:0043623;cellular protein complex assembly;2.40449656697671e-05!GO:0009056;catabolic process;2.60288976430144e-05!GO:0003713;transcription coactivator activity;2.81199502853446e-05!GO:0006084;acetyl-CoA metabolic process;2.81414975333361e-05!GO:0003684;damaged DNA binding;2.85484537369159e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;3.00632316777986e-05!GO:0006888;ER to Golgi vesicle-mediated transport;4.00522917417802e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;4.25486750438831e-05!GO:0048475;coated membrane;4.71015900606424e-05!GO:0030117;membrane coat;4.71015900606424e-05!GO:0045892;negative regulation of transcription, DNA-dependent;4.78281476244869e-05!GO:0030120;vesicle coat;5.67540758148337e-05!GO:0030662;coated vesicle membrane;5.67540758148337e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;5.77619046740189e-05!GO:0006613;cotranslational protein targeting to membrane;5.89033760357843e-05!GO:0051427;hormone receptor binding;6.45653192225163e-05!GO:0009109;coenzyme catabolic process;6.58202812559975e-05!GO:0031497;chromatin assembly;7.02575185180656e-05!GO:0006334;nucleosome assembly;8.32878243389678e-05!GO:0005762;mitochondrial large ribosomal subunit;8.80760966354713e-05!GO:0000315;organellar large ribosomal subunit;8.80760966354713e-05!GO:0008654;phospholipid biosynthetic process;8.91764705447937e-05!GO:0048523;negative regulation of cellular process;9.77779202514344e-05!GO:0044440;endosomal part;0.000103563857124599!GO:0010008;endosome membrane;0.000103563857124599!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000104893015820778!GO:0016859;cis-trans isomerase activity;0.000115372933310653!GO:0006383;transcription from RNA polymerase III promoter;0.000121550632689977!GO:0005798;Golgi-associated vesicle;0.000122489560507948!GO:0035257;nuclear hormone receptor binding;0.000131147716318346!GO:0004674;protein serine/threonine kinase activity;0.000136600761465296!GO:0003690;double-stranded DNA binding;0.000137078633437577!GO:0007059;chromosome segregation;0.000151289789246895!GO:0016741;transferase activity, transferring one-carbon groups;0.000154568976834881!GO:0006338;chromatin remodeling;0.0001561645942371!GO:0008168;methyltransferase activity;0.000166571328698947!GO:0006352;transcription initiation;0.000182654802298321!GO:0000776;kinetochore;0.000189845363835025!GO:0012501;programmed cell death;0.000191350917088072!GO:0003678;DNA helicase activity;0.0002044298474498!GO:0008186;RNA-dependent ATPase activity;0.000206305987033212!GO:0006310;DNA recombination;0.000207362216125916!GO:0006915;apoptosis;0.000218919838533113!GO:0005788;endoplasmic reticulum lumen;0.000218919838533113!GO:0006302;double-strand break repair;0.000240306540177953!GO:0031124;mRNA 3'-end processing;0.000240705673552241!GO:0005839;proteasome core complex (sensu Eukaryota);0.000241546482717765!GO:0032561;guanyl ribonucleotide binding;0.000243650274145843!GO:0019001;guanyl nucleotide binding;0.000243650274145843!GO:0006414;translational elongation;0.000248124433877342!GO:0005637;nuclear inner membrane;0.000275693666235898!GO:0016853;isomerase activity;0.000286679219426903!GO:0019899;enzyme binding;0.000289254662430534!GO:0051187;cofactor catabolic process;0.000291437226867167!GO:0004527;exonuclease activity;0.000319457262333332!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000321850964449752!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000327453289307908!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000367422491757834!GO:0015399;primary active transmembrane transporter activity;0.000367422491757834!GO:0005876;spindle microtubule;0.000412589794108716!GO:0007264;small GTPase mediated signal transduction;0.000438104007305829!GO:0051052;regulation of DNA metabolic process;0.000449872922362403!GO:0007052;mitotic spindle organization and biogenesis;0.000464622650381474!GO:0000059;protein import into nucleus, docking;0.000467847357984467!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000529395304666436!GO:0032508;DNA duplex unwinding;0.000565555298953593!GO:0032392;DNA geometric change;0.000565555298953593!GO:0016787;hydrolase activity;0.000584389727056291!GO:0015980;energy derivation by oxidation of organic compounds;0.000597763564817984!GO:0004004;ATP-dependent RNA helicase activity;0.000613571817090051!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000624255062005766!GO:0004298;threonine endopeptidase activity;0.000688967460275066!GO:0007093;mitotic cell cycle checkpoint;0.000733961769731672!GO:0043021;ribonucleoprotein binding;0.00074761983090444!GO:0031123;RNA 3'-end processing;0.000763422385972565!GO:0000314;organellar small ribosomal subunit;0.000810882870900213!GO:0005763;mitochondrial small ribosomal subunit;0.000810882870900213!GO:0006612;protein targeting to membrane;0.000898433315062967!GO:0005770;late endosome;0.000975260271715963!GO:0046474;glycerophospholipid biosynthetic process;0.000975260271715963!GO:0031072;heat shock protein binding;0.000998495479170353!GO:0043596;nuclear replication fork;0.00101386237494091!GO:0008219;cell death;0.0010226607785462!GO:0016265;death;0.0010226607785462!GO:0048519;negative regulation of biological process;0.00103746452675953!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00103746452675953!GO:0006378;mRNA polyadenylation;0.00112739773100231!GO:0043681;protein import into mitochondrion;0.00122072041961717!GO:0006268;DNA unwinding during replication;0.001310062559062!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00131937568371812!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00131937568371812!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00131937568371812!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00134256917983658!GO:0005083;small GTPase regulator activity;0.00135163088386315!GO:0006818;hydrogen transport;0.00145228290685264!GO:0003702;RNA polymerase II transcription factor activity;0.00146582501277024!GO:0051246;regulation of protein metabolic process;0.00158760415989898!GO:0005875;microtubule associated complex;0.00166548855197332!GO:0044431;Golgi apparatus part;0.00173311556465915!GO:0045045;secretory pathway;0.00176688545713988!GO:0006091;generation of precursor metabolites and energy;0.00184363189708963!GO:0006405;RNA export from nucleus;0.00194330458106046!GO:0051920;peroxiredoxin activity;0.00203069040086492!GO:0000228;nuclear chromosome;0.00205749861129677!GO:0008270;zinc ion binding;0.00211013755788989!GO:0005684;U2-dependent spliceosome;0.00219345615169133!GO:0009165;nucleotide biosynthetic process;0.00221222394260012!GO:0005048;signal sequence binding;0.00239983066109166!GO:0046489;phosphoinositide biosynthetic process;0.00240882401918365!GO:0030133;transport vesicle;0.00248117348342256!GO:0015992;proton transport;0.00254630856393181!GO:0043492;ATPase activity, coupled to movement of substances;0.00258244834119774!GO:0004860;protein kinase inhibitor activity;0.00263929532355197!GO:0051087;chaperone binding;0.00277393269735267!GO:0030867;rough endoplasmic reticulum membrane;0.00289210764350204!GO:0000792;heterochromatin;0.00292377426457747!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0029258012056668!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0029258012056668!GO:0022890;inorganic cation transmembrane transporter activity;0.0029340821191842!GO:0006611;protein export from nucleus;0.00296904884970779!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00304646846263942!GO:0008092;cytoskeletal protein binding;0.00318466234291322!GO:0006401;RNA catabolic process;0.00330944906138132!GO:0006650;glycerophospholipid metabolic process;0.00339444378066186!GO:0005769;early endosome;0.00339453493173849!GO:0032259;methylation;0.00341522490782987!GO:0000118;histone deacetylase complex;0.00343951975423646!GO:0006626;protein targeting to mitochondrion;0.00350112173921125!GO:0045454;cell redox homeostasis;0.00355017155175635!GO:0008022;protein C-terminus binding;0.00362608119750661!GO:0006270;DNA replication initiation;0.00363037688579914!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00373890279044132!GO:0006839;mitochondrial transport;0.00379360729527334!GO:0006402;mRNA catabolic process;0.00379408655843972!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00397397690518432!GO:0032200;telomere organization and biogenesis;0.00424974960060534!GO:0000723;telomere maintenance;0.00424974960060534!GO:0006891;intra-Golgi vesicle-mediated transport;0.00455437069514741!GO:0004518;nuclease activity;0.00462575120308219!GO:0000910;cytokinesis;0.00479032558728472!GO:0030880;RNA polymerase complex;0.00480250587118739!GO:0030118;clathrin coat;0.00508189563792704!GO:0043284;biopolymer biosynthetic process;0.00514910022518012!GO:0043631;RNA polyadenylation;0.00521033428587886!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00523887602153062!GO:0016251;general RNA polymerase II transcription factor activity;0.00525980261898629!GO:0042981;regulation of apoptosis;0.00528191000051544!GO:0043067;regulation of programmed cell death;0.00568074247643908!GO:0042393;histone binding;0.00587562668826098!GO:0043414;biopolymer methylation;0.00606557906118032!GO:0006595;polyamine metabolic process;0.00607052233902141!GO:0008276;protein methyltransferase activity;0.00617698375604276!GO:0007088;regulation of mitosis;0.00617698375604276!GO:0019887;protein kinase regulator activity;0.00627664923783026!GO:0030521;androgen receptor signaling pathway;0.00663109005648939!GO:0048500;signal recognition particle;0.00668989609862029!GO:0009116;nucleoside metabolic process;0.00677800405500993!GO:0008033;tRNA processing;0.00693734195455851!GO:0000922;spindle pole;0.00706928833405329!GO:0043601;nuclear replisome;0.0071444904282798!GO:0030894;replisome;0.0071444904282798!GO:0006284;base-excision repair;0.00723238621196252!GO:0005885;Arp2/3 protein complex;0.00747078063774308!GO:0040029;regulation of gene expression, epigenetic;0.0075957564873211!GO:0008312;7S RNA binding;0.00775424009239261!GO:0048487;beta-tubulin binding;0.00778454253338258!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00810458022768039!GO:0000428;DNA-directed RNA polymerase complex;0.00810458022768039!GO:0051287;NAD binding;0.00812310839295576!GO:0003711;transcription elongation regulator activity;0.00813549660664066!GO:0030036;actin cytoskeleton organization and biogenesis;0.00852244052655221!GO:0051252;regulation of RNA metabolic process;0.00856092429116318!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00894970139511938!GO:0033116;ER-Golgi intermediate compartment membrane;0.00894970139511938!GO:0000049;tRNA binding;0.00895462331356009!GO:0006607;NLS-bearing substrate import into nucleus;0.00913918410512156!GO:0051540;metal cluster binding;0.00914952297275045!GO:0051536;iron-sulfur cluster binding;0.00914952297275045!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00922229579317064!GO:0016569;covalent chromatin modification;0.00929437178081551!GO:0016272;prefoldin complex;0.00929437178081551!GO:0016301;kinase activity;0.00931612397398523!GO:0046966;thyroid hormone receptor binding;0.00952723344961278!GO:0030384;phosphoinositide metabolic process;0.00953168766298233!GO:0012506;vesicle membrane;0.00982891428565065!GO:0045893;positive regulation of transcription, DNA-dependent;0.00995766938917195!GO:0007004;telomere maintenance via telomerase;0.0100225692343776!GO:0006505;GPI anchor metabolic process;0.0100299056714555!GO:0030663;COPI coated vesicle membrane;0.0101558952440452!GO:0030126;COPI vesicle coat;0.0101558952440452!GO:0031628;opioid receptor binding;0.0105483029894527!GO:0031852;mu-type opioid receptor binding;0.0105483029894527!GO:0009303;rRNA transcription;0.0106439959087161!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0109372427655322!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0110303121581057!GO:0007021;tubulin folding;0.011431335289271!GO:0051789;response to protein stimulus;0.0114901767657206!GO:0006986;response to unfolded protein;0.0114901767657206!GO:0032594;protein transport within lipid bilayer;0.0116167493802442!GO:0032907;transforming growth factor-beta3 production;0.0116167493802442!GO:0032596;protein transport into lipid raft;0.0116167493802442!GO:0032910;regulation of transforming growth factor-beta3 production;0.0116167493802442!GO:0032595;B cell receptor transport within lipid bilayer;0.0116167493802442!GO:0033606;chemokine receptor transport within lipid bilayer;0.0116167493802442!GO:0032600;chemokine receptor transport out of lipid raft;0.0116167493802442!GO:0032599;protein transport out of lipid raft;0.0116167493802442!GO:0032597;B cell receptor transport into lipid raft;0.0116167493802442!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0116167493802442!GO:0006376;mRNA splice site selection;0.0117576396335514!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0117576396335514!GO:0000139;Golgi membrane;0.0120758446945236!GO:0045941;positive regulation of transcription;0.0121544358184!GO:0019843;rRNA binding;0.0122710180709693!GO:0008139;nuclear localization sequence binding;0.0123101282556842!GO:0007050;cell cycle arrest;0.012483849777417!GO:0031252;leading edge;0.0126904104435781!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0128235540975499!GO:0015002;heme-copper terminal oxidase activity;0.0128235540975499!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0128235540975499!GO:0004129;cytochrome-c oxidase activity;0.0128235540975499!GO:0000339;RNA cap binding;0.0128235540975499!GO:0019867;outer membrane;0.0130931771063938!GO:0046467;membrane lipid biosynthetic process;0.0131806061105981!GO:0003746;translation elongation factor activity;0.0136235166725674!GO:0030695;GTPase regulator activity;0.0136493666813499!GO:0019210;kinase inhibitor activity;0.0138465343784958!GO:0005869;dynactin complex;0.0143871720484816!GO:0030658;transport vesicle membrane;0.0145446608352916!GO:0000725;recombinational repair;0.0145446608352916!GO:0000724;double-strand break repair via homologous recombination;0.0145446608352916!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0150145570350998!GO:0045047;protein targeting to ER;0.0150145570350998!GO:0031902;late endosome membrane;0.0152905810057679!GO:0031577;spindle checkpoint;0.0155865243423271!GO:0005832;chaperonin-containing T-complex;0.0156368508354786!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0159169592244583!GO:0016407;acetyltransferase activity;0.0161884607127505!GO:0005773;vacuole;0.0164687122550128!GO:0006497;protein amino acid lipidation;0.0166356583701319!GO:0005652;nuclear lamina;0.0168908368570609!GO:0019904;protein domain specific binding;0.0171149937781869!GO:0005938;cell cortex;0.0172632776461955!GO:0019207;kinase regulator activity;0.0174597228783227!GO:0042158;lipoprotein biosynthetic process;0.0174755724452896!GO:0006275;regulation of DNA replication;0.017814078345541!GO:0044454;nuclear chromosome part;0.0183615541914479!GO:0031570;DNA integrity checkpoint;0.0184602416001092!GO:0051539;4 iron, 4 sulfur cluster binding;0.0185278607084354!GO:0044452;nucleolar part;0.0186078014072892!GO:0006289;nucleotide-excision repair;0.019394438437697!GO:0035258;steroid hormone receptor binding;0.019394438437697!GO:0005905;coated pit;0.0197952495738773!GO:0000819;sister chromatid segregation;0.0198222580690616!GO:0031968;organelle outer membrane;0.0198526443037271!GO:0006506;GPI anchor biosynthetic process;0.0205724137884515!GO:0006144;purine base metabolic process;0.0206939804661397!GO:0043189;H4/H2A histone acetyltransferase complex;0.0209993344677722!GO:0007006;mitochondrial membrane organization and biogenesis;0.0212327856407845!GO:0035267;NuA4 histone acetyltransferase complex;0.0216464013850162!GO:0005669;transcription factor TFIID complex;0.0219917004300598!GO:0030660;Golgi-associated vesicle membrane;0.0221833580667569!GO:0004003;ATP-dependent DNA helicase activity;0.0223621236772536!GO:0044433;cytoplasmic vesicle part;0.0223621236772536!GO:0030176;integral to endoplasmic reticulum membrane;0.0227989297249447!GO:0006672;ceramide metabolic process;0.0229061438479149!GO:0016491;oxidoreductase activity;0.0230806627935661!GO:0000082;G1/S transition of mitotic cell cycle;0.0231394489646132!GO:0007265;Ras protein signal transduction;0.0231394489646132!GO:0065009;regulation of a molecular function;0.0244677468878204!GO:0008143;poly(A) binding;0.0246389098910952!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0248108843612263!GO:0000070;mitotic sister chromatid segregation;0.0251614223716653!GO:0044450;microtubule organizing center part;0.0252940344118577!GO:0006220;pyrimidine nucleotide metabolic process;0.025383104017394!GO:0016126;sterol biosynthetic process;0.0259688799749539!GO:0030137;COPI-coated vesicle;0.0259878643955292!GO:0030518;steroid hormone receptor signaling pathway;0.0263886811905124!GO:0043069;negative regulation of programmed cell death;0.0266104186776705!GO:0030659;cytoplasmic vesicle membrane;0.0266104186776705!GO:0030029;actin filament-based process;0.0281036597074875!GO:0006730;one-carbon compound metabolic process;0.0285714124964845!GO:0043022;ribosome binding;0.0285763578514401!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0285763578514401!GO:0016570;histone modification;0.0291531858266979!GO:0016202;regulation of striated muscle development;0.0292300396829214!GO:0043066;negative regulation of apoptosis;0.0293025268384934!GO:0030131;clathrin adaptor complex;0.0296004712985819!GO:0000123;histone acetyltransferase complex;0.0301554310743617!GO:0030119;AP-type membrane coat adaptor complex;0.0307625970380692!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0307625970380692!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0321933255326469!GO:0008536;Ran GTPase binding;0.0323773084906286!GO:0008180;signalosome;0.0326965152852486!GO:0046519;sphingoid metabolic process;0.0332103151388575!GO:0046914;transition metal ion binding;0.0335368846852361!GO:0043488;regulation of mRNA stability;0.0335368846852361!GO:0043487;regulation of RNA stability;0.0335368846852361!GO:0022406;membrane docking;0.0335368846852361!GO:0048278;vesicle docking;0.0335368846852361!GO:0047485;protein N-terminus binding;0.0335368846852361!GO:0008637;apoptotic mitochondrial changes;0.0338288888387024!GO:0045603;positive regulation of endothelial cell differentiation;0.034055164125809!GO:0006301;postreplication repair;0.0349885997295446!GO:0000781;chromosome, telomeric region;0.0360441623495469!GO:0030140;trans-Golgi network transport vesicle;0.0364076684061815!GO:0004532;exoribonuclease activity;0.0366011579924646!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0366011579924646!GO:0042770;DNA damage response, signal transduction;0.0366475637112869!GO:0005663;DNA replication factor C complex;0.0368342635911647!GO:0005741;mitochondrial outer membrane;0.0368695945155703!GO:0016585;chromatin remodeling complex;0.0383192991800454!GO:0006541;glutamine metabolic process;0.038416857560768!GO:0005784;translocon complex;0.0384498986803041!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0394878640526748!GO:0051059;NF-kappaB binding;0.0398248322012848!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0409718159633432!GO:0042791;5S class rRNA transcription;0.0410872387708332!GO:0000127;transcription factor TFIIIC complex;0.0410872387708332!GO:0042797;tRNA transcription from RNA polymerase III promoter;0.0410872387708332!GO:0046128;purine ribonucleoside metabolic process;0.0415210298247029!GO:0042278;purine nucleoside metabolic process;0.0415210298247029!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0418302410059378!GO:0008250;oligosaccharyl transferase complex;0.0418302410059378!GO:0006379;mRNA cleavage;0.0422747418136356!GO:0032039;integrator complex;0.0423816809116754!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0427108397375037!GO:0051098;regulation of binding;0.0434943290173066!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0434943290173066!GO:0055083;monovalent inorganic anion homeostasis;0.0434943290173066!GO:0055064;chloride ion homeostasis;0.0434943290173066!GO:0030644;cellular chloride ion homeostasis;0.0434943290173066!GO:0045502;dynein binding;0.0436229008360938!GO:0051056;regulation of small GTPase mediated signal transduction;0.0441420671985804!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0441748608856482!GO:0017134;fibroblast growth factor binding;0.0443706777998749!GO:0008408;3'-5' exonuclease activity;0.0448807439957271!GO:0006904;vesicle docking during exocytosis;0.0454633553786211!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.046051043221276!GO:0000077;DNA damage checkpoint;0.0465273912434484!GO:0042769;DNA damage response, detection of DNA damage;0.0472383700551379!GO:0005791;rough endoplasmic reticulum;0.0473843306196883!GO:0007018;microtubule-based movement;0.0485359155790169!GO:0033673;negative regulation of kinase activity;0.0485359155790169!GO:0006469;negative regulation of protein kinase activity;0.0485359155790169!GO:0006278;RNA-dependent DNA replication;0.048774293960511!GO:0008097;5S rRNA binding;0.0488795564505264!GO:0043433;negative regulation of transcription factor activity;0.0490138305474236!GO:0019238;cyclohydrolase activity;0.0490138305474236!GO:0003727;single-stranded RNA binding;0.0490138305474236!GO:0006892;post-Golgi vesicle-mediated transport;0.049025072870099!GO:0046578;regulation of Ras protein signal transduction;0.0492697763572304!GO:0004523;ribonuclease H activity;0.0495064566715512!GO:0004448;isocitrate dehydrogenase activity;0.0495064566715512!GO:0003725;double-stranded RNA binding;0.0499703576546109
|sample_id=10610
|sample_note=
|sample_sex=unknown
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=stomach
|top_motifs=ONECUT1,2:3.14935770402;VSX1,2:3.14580869437;LEF1_TCF7_TCF7L1,2:2.76139589715;PITX1..3:2.50106487963;IKZF2:2.42282378477;BPTF:2.30279448467;NANOG:2.15727535231;POU6F1:2.00476787876;SOX{8,9,10}:1.83407093294;TEF:1.78244042092;RREB1:1.78038289067;ZBTB16:1.77148711479;FOXP1:1.75504310739;YY1:1.74327808963;RFX2..5_RFXANK_RFXAP:1.73465904265;GATA4:1.68843110377;HOX{A6,A7,B6,B7}:1.67445397745;FOXM1:1.57393569697;TOPORS:1.57080561851;XCPE1{core}:1.56553941665;NFY{A,B,C}:1.54847330889;ZNF143:1.49689900131;EN1,2:1.46308064267;SNAI1..3:1.45970826161;SP1:1.45358440132;POU1F1:1.44300940079;MED-1{core}:1.42853189097;GFI1:1.41556608509;RFX1:1.40441444951;E2F1..5:1.39303344561;NRF1:1.36450481898;FOXD3:1.35993098313;ZEB1:1.33687774892;LMO2:1.33627123575;LHX3,4:1.32817596576;NKX6-1,2:1.28919868928;PAX8:1.26223967203;ARID5B:1.24528927762;ZFP161:1.21068669216;ATF4:1.19098052618;NKX2-3_NKX2-5:1.12154145678;ELK1,4_GABP{A,B1}:1.09650879339;PAX1,9:1.08649934613;SOX2:1.04699879911;PATZ1:1.01339795102;FOXL1:1.00075728813;CDC5L:0.919602578194;T:0.853064468532;TFAP2B:0.853006276794;CUX2:0.808085980655;RORA:0.751221450157;AIRE:0.744745031871;FOX{F1,F2,J1}:0.738763737935;ATF5_CREB3:0.722330657934;BREu{core}:0.709946164234;EVI1:0.709552144122;NKX3-1:0.708993058548;RBPJ:0.698966255162;ESRRA:0.66242798038;TFDP1:0.6555520903;ZBTB6:0.642150821944;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.635666973705;FOXO1,3,4:0.596249527017;MTE{core}:0.57950450796;HOX{A4,D4}:0.579469753594;STAT1,3:0.559980860116;HBP1_HMGB_SSRP1_UBTF:0.551765608255;CREB1:0.54606057077;MAZ:0.545438050675;ADNP_IRX_SIX_ZHX:0.544936464859;DBP:0.52798836292;REST:0.499745504424;ATF2:0.481739083566;TAL1_TCF{3,4,12}:0.472605692049;PBX1:0.456586925719;KLF4:0.448503853083;EGR1..3:0.445041943353;SOX17:0.415822875993;FOX{I1,J2}:0.413331714051;PRDM1:0.409647093256;MYB:0.378085472245;PRRX1,2:0.375873564212;POU5F1:0.367776761061;FOX{D1,D2}:0.365422398238;MZF1:0.334237309821;PAX5:0.333861243851;bHLH_family:0.316558638762;JUN:0.305555875232;PAX4:0.280826868094;NHLH1,2:0.266713694703;NFE2L1:0.244598033962;PAX3,7:0.225088062961;SOX5:0.219479571469;PDX1:0.19056464758;TLX2:0.149919686264;FOXA2:0.148753341219;HIC1:0.118488442312;UFEwm:0.116636796323;ZIC1..3:0.0977617094267;MYFfamily:0.0872202303822;MTF1:0.0807465775581;GTF2I:0.0609911799368;MYOD1:0.0605215343894;NR5A1,2:0.0603723426738;FOXN1:0.0307856648495;POU2F1..3:0.0176771026473;CDX1,2,4:-0.0105837785596;TLX1..3_NFIC{dimer}:-0.014314337329;ALX1:-0.0461875649459;SREBF1,2:-0.0809987502003;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.101321826055;ZNF423:-0.138135491616;FOXQ1:-0.191857368386;NKX2-1,4:-0.206268169761;NFIX:-0.26217465806;RXR{A,B,G}:-0.308213681522;HNF1A:-0.353889745653;GFI1B:-0.367265875681;SPIB:-0.368315055874;CRX:-0.382567907527;TFAP2{A,C}:-0.39776344525;STAT5{A,B}:-0.416810118886;HNF4A_NR2F1,2:-0.440712950744;AHR_ARNT_ARNT2:-0.455344343825;GATA6:-0.463250307086;NFE2:-0.499915620295;TBP:-0.504531753443;ZNF384:-0.517530276091;PAX2:-0.518386687333;HOX{A5,B5}:-0.525311754478;NR1H4:-0.529377277906;GZF1:-0.567282053128;OCT4_SOX2{dimer}:-0.571874564354;TFCP2:-0.575994240946;TP53:-0.580047829349;GTF2A1,2:-0.604444327384;ZNF148:-0.621775644493;HSF1,2:-0.631081226631;SPI1:-0.650456741844;RXRA_VDR{dimer}:-0.660387784649;RUNX1..3:-0.679476655985;EP300:-0.684286344887;MEF2{A,B,C,D}:-0.707217277871;BACH2:-0.715847642284;TGIF1:-0.734651362412;FOSL2:-0.745585904365;HAND1,2:-0.746635181305;ESR1:-0.748740412101;FOS_FOS{B,L1}_JUN{B,D}:-0.750186227972;ELF1,2,4:-0.757872329126;MYBL2:-0.766558457532;AR:-0.77429588698;NFKB1_REL_RELA:-0.789356758201;HOXA9_MEIS1:-0.800731259036;MAFB:-0.801693277092;EBF1:-0.801925520262;FOXP3:-0.815382141235;ZNF238:-0.849149320851;XBP1:-0.851179562676;DMAP1_NCOR{1,2}_SMARC:-0.894168618892;SRF:-0.903643270106;ALX4:-0.926938503661;POU3F1..4:-1.0175601788;IKZF1:-1.03183990274;CEBPA,B_DDIT3:-1.04869406452;HLF:-1.10706088775;NKX2-2,8:-1.12777896598;NR6A1:-1.15294411704;HMGA1,2:-1.17953170577;TEAD1:-1.18900145662;NKX3-2:-1.23618422357;NFIL3:-1.25353890389;PAX6:-1.33768851632;NANOG{mouse}:-1.38124047891;PPARG:-1.38482795816;ETS1,2:-1.40183204533;HIF1A:-1.46289007647;IRF7:-1.47124071993;IRF1,2:-1.47213334592;ATF6:-1.4972477308;SPZ1:-1.52802403775;TFAP4:-1.5476769454;NR3C1:-1.56229465657;GLI1..3:-1.56846961692;GCM1,2:-1.56925032108;SMAD1..7,9:-1.7775044852;NFE2L2:-1.8644028415;STAT2,4,6:-1.86606202685;HES1:-1.99180081341;NFATC1..3:-2.27422582727;TBX4,5:-2.27765278209;HMX1:-2.33513621681
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10610-108F7;search_select_hide=table117:FF:10610-108F7
}}
}}

Latest revision as of 14:31, 3 June 2020

Name:small cell gastrointestinal carcinoma cell line:ECC10
Species:Human (Homo sapiens)
Library ID:CNhs11736
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuestomach
dev stageNA
sexunknown
ageunknown
cell typeunclassifiable
cell lineECC10
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005425
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11736 CAGE DRX008005 DRR008877
Accession ID Hg19

Library idBAMCTSS
CNhs11736 DRZ000302 DRZ001687
Accession ID Hg38

Library idBAMCTSS
CNhs11736 DRZ011652 DRZ013037
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel1.019
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.449
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.524
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0788
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0788
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.879
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0105
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0938
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.489
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.212
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.24
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.174
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0203
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.145
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0788
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.145
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.124
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.449
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.203
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0178
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11736

Jaspar motifP-value
MA0002.27.0154e-5
MA0003.10.0434
MA0004.10.834
MA0006.10.58
MA0007.10.228
MA0009.10.964
MA0014.10.29
MA0017.10.00232
MA0018.20.00459
MA0019.10.889
MA0024.14.06662e-4
MA0025.10.449
MA0027.10.458
MA0028.10.132
MA0029.10.576
MA0030.10.22
MA0031.10.418
MA0035.20.322
MA0038.10.0165
MA0039.20.621
MA0040.10.318
MA0041.10.236
MA0042.10.491
MA0043.10.0494
MA0046.10.623
MA0047.20.76
MA0048.10.721
MA0050.11.17104e-5
MA0051.19.35666e-5
MA0052.10.0819
MA0055.10.628
MA0057.10.102
MA0058.10.862
MA0059.10.608
MA0060.13.42228e-10
MA0061.10.00363
MA0062.20.386
MA0065.20.0049
MA0066.10.0431
MA0067.10.77
MA0068.10.69
MA0069.10.942
MA0070.10.199
MA0071.10.656
MA0072.10.929
MA0073.10.394
MA0074.10.366
MA0076.10.054
MA0077.10.144
MA0078.10.932
MA0079.20.454
MA0080.21.70892e-10
MA0081.10.0442
MA0083.10.0698
MA0084.10.482
MA0087.10.837
MA0088.10.964
MA0090.10.015
MA0091.10.832
MA0092.10.102
MA0093.10.942
MA0099.24.07332e-12
MA0100.10.3
MA0101.10.0177
MA0102.20.0335
MA0103.10.166
MA0104.20.834
MA0105.14.47709e-4
MA0106.10.217
MA0107.10.00349
MA0108.20.253
MA0111.10.869
MA0112.24.95063e-5
MA0113.10.0934
MA0114.10.0624
MA0115.10.648
MA0116.15.5775e-4
MA0117.10.784
MA0119.10.232
MA0122.10.357
MA0124.10.542
MA0125.10.0456
MA0131.10.209
MA0135.10.858
MA0136.14.36552e-8
MA0137.20.0451
MA0138.20.797
MA0139.10.399
MA0140.10.0494
MA0141.10.15
MA0142.10.0146
MA0143.10.285
MA0144.10.0061
MA0145.10.0592
MA0146.10.715
MA0147.10.941
MA0148.10.994
MA0149.10.202
MA0150.12.03073e-4
MA0152.10.398
MA0153.10.416
MA0154.10.00621
MA0155.10.243
MA0156.11.72582e-4
MA0157.10.877
MA0159.10.00655
MA0160.10.141
MA0162.10.171
MA0163.11.68102e-7
MA0164.10.789
MA0258.10.0144
MA0259.10.674



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11736

Novel motifP-value
10.162
100.151
1000.85
1010.66
1020.41
1030.0374
1040.31
1050.116
1060.0058
1070.0419
1080.999
1090.221
110.133
1100.296
1110.333
1120.159
1130.157
1140.0341
1150.5
1160.263
1170.432
1180.764
1190.302
120.66
1200.556
1210.882
1220.822
1230.612
1240.255
1250.15
1260.564
1270.563
1280.0598
1290.282
130.351
1300.641
1310.518
1320.646
1330.478
1340.621
1350.00127
1360.357
1370.174
1380.793
1390.215
140.895
1400.681
1410.898
1420.996
1430.0166
1440.566
1450.303
1460.349
1470.506
1480.052
1490.121
150.0804
1500.567
1510.463
1520.0581
1530.341
1540.552
1550.624
1560.754
1570.505
1580.317
1590.0138
160.153
1600.0293
1610.527
1620.815
1630.468
1640.273
1650.183
1660.716
1670.505
1680.0601
1690.00589
170.176
180.154
190.093
20.425
200.606
210.298
220.166
230.0125
240.122
250.466
260.131
270.142
280.758
290.117
30.111
300.439
310.575
320.00612
330.256
340.255
350.305
360.56
370.126
380.477
390.171
40.735
400.65
410.141
420.253
430.0902
440.636
450.287
460.191
470.722
480.354
490.372
50.136
500.752
510.307
520.133
530.599
540.3
550.227
560.544
570.559
580.197
590.0149
60.979
600.0236
610.39
620.0417
630.235
640.301
650.172
660.284
670.803
680.421
690.432
70.371
700.11
710.112
720.0971
730.132
740.231
750.397
760.924
770.083
780.309
790.415
80.133
800.105
810.209
820.033
830.0327
840.294
850.00551
860.311
870.193
880.676
890.103
90.122
900.374
910.228
920.043
930.912
940.101
950.375
960.331
970.66
980.454
990.506



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11736


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
3119 (gastrointestinal system cancer)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0101533 (gastrointestinal cancer cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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