FF:10610-108F7: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005425 | |||
|accession_numbers=CAGE;DRX008005;DRR008877;DRZ000302;DRZ001687;DRZ011652;DRZ013037 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | ||
|ancestors_in_disease_facet=DOID:0050686,DOID: | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:3119 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0101533 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
| | |||
|fonse_cell_line=FF:0101120,FF:0101533 | |fonse_cell_line=FF:0101120,FF:0101533 | ||
|fonse_cell_line_closure=FF:0101120,FF:0101533 | |fonse_cell_line_closure=FF:0101120,FF:0101533 | ||
| Line 35: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520gastrointestinal%2520carcinoma%2520cell%2520line%253aECC10.CNhs11736.10610-108F7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520gastrointestinal%2520carcinoma%2520cell%2520line%253aECC10.CNhs11736.10610-108F7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520gastrointestinal%2520carcinoma%2520cell%2520line%253aECC10.CNhs11736.10610-108F7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/small%2520cell%2520gastrointestinal%2520carcinoma%2520cell%2520line%253aECC10.CNhs11736.10610-108F7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/small%2520cell%2520gastrointestinal%2520carcinoma%2520cell%2520line%253aECC10.CNhs11736.10610-108F7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10610-108F7 | |id=FF:10610-108F7 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0100297;;FF:0101533 | ||
|is_obsolete= | |||
|library_id=CNhs11736 | |||
|library_id_phase_based=2:CNhs11736 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10610 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10610 | |||
|name=small cell gastrointestinal carcinoma cell line:ECC10 | |name=small cell gastrointestinal carcinoma cell line:ECC10 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11736,LSID819,release009,COMPLETED | |profile_hcage=CNhs11736,LSID819,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|repeat_enrich_byname=0.0738569504945366,0,0,0,0.315533659232688,0,0,0.0788013528114092,0.0788013528114092,0,0,0,0,0,0,0,0.00707984179463364,0.0394006764057046,0.779029150899184,0.197663013491403,0.0394006764057046,0.0788013528114092,0.102036354654333,0,0.0788013528114092,0,0.120129062611435,0.445690894190512,0,0.254258717080198,0.475599683857083,0,0.171769450627568,0,-0.0504125515893149,0.0826059564636207,0.0788013528114092,0.107224153682964,0,0.0902261190347554,-0.305472230898407,0,0.165458827622194,0.0771323254559466,0,0,0,0,-0.0269132980602295,0,0.133379233286457,0.721533169857964,0.817704903316546,-0.320002650918949,0.147552258309838,0.0919396192047133,0,0.0394006764057046,0.05485036993408,0.214998314579197,0,0,-0.121779851751874,0.245921985916384,0,0,1.29691387831825,0,-0.279862167177823,-0.0178392304779447,0,0.254381586811248,0,0,0.0788013528114092,0,0,0.0788013528114092,0,0,0,0.0394006764057046,0,0.307435733647204,0.314699948584517,0.179579773575564,0.299889317580133,0.714159217756369,0.091547632190996,0.017573807352269,0,0.064969042073472,-0.294484803145158,-0.204852252090164,0.0476469447281688,0.651072846925393,0.0286353983292916,-0.00250040942978036,0.0535743735848811,0.163187556010121,0.0230185211697453,-0.147401849371139,-0.189981719549847,0.098456874716115,-0.0829298593189596,0.381859453952428,0,-0.441961769906976,0.0747480300380814,-0.440931920003547,0.074399289568497,0,0,0,-0.164795938506247,0.056683797869693,0.294653154315649,-0.0765457040063793,0.0435079715200374,0.0159004910739855,0.308592527786243,0.239034586417697,0.399133146109395,-0.0395325284566706,-0.378635100085186,0,-0.091086777520115,0.0218504699270006,0,0.0553724145713218,-0.00607135285010865,0.0183412310740592,0.0813173053674395,0,0.195456315732426,0.0771323254559466,0.387744500718608,-0.0169776463833909,-0.117967510903849,0,0,-0.278887913291279,0,0,0.18750207304747,0,0.145476586533315,0.481828127575261,-0.239602825450033,-0.154054208744136,0,0.146615688688071,0.0129047689797205,0.0979522137891925,0,0.293815990687289,-0.123369408799396,-0.0288509645286787,0.00106431215045211,0.0344397362032584,0.0300206710555677,-0.14200797757416,-0.0630128009319848,0.199115111048166,1.20890487851606,-0.0333284552296125,0.109225812188085,-0.168022086753785,-0.410059705794653,0.293726795118492,-0.0881268324752877,0.0788013528114092,0.689419644397153,0.438964918386971,0.186496442087237,0.156059266779193,0,0.145210588350491,0,0.0415093480582445,0.0394006764057046,-0.0246000026300822,-0.0648340676161572,0.916461555936787,-0.0959678664058754,0.0388468657422818,0.107622883243772,-0.342440043583462,0.0630172258086739,0,0,0.413569010470394,0.228513075660934,0.308844334061732,-0.211650427864589,0.0503558785165764,0.0230443481322734,-0.129109063622487,0,0.503580772362984,0.398007989760002,0.443957739779018,0,0.292793857873528,0.313064590325944,0.435100450224059,0.0295055130983807,0,0,0.639935076575779,0.0788013528114092,0,0.35582428631377,0.269200329202996,0.608515944607447,-0.174524988675347,0.0727382932666575,0.332726456862958,0,0,0.0257369891258444,0,0.218387622448128,0,0,-0.148248919053313,0.0866366421008873,0.0788013528114092,0,0.0788013528114092,0.0115188146774329,0.0788013528114092,0,0,0,0,0,0,-0.233438206066211,0.0587356802539463,0,-0.202072027831009,0,0.0788013528114092,0,0,0,0,0.162089021453586,0,-1.2511526828048,0.16126414458154,0.322673478514092,0,0.112138969672362,0.199867651806756,0.0656615931017095,-0.0124586474624546,0.32663111368564,0.145476586533315,-0.0530613536862226,0,0,0,0.475599683857083,0.255037166225664,0,0,0.316727622092682,0.149944658790066,0.283447698961211,0.107737041399017,0,0,0,0.879282755370676,0,0,0,0,0.0999539493818742,0,0,0.0290409213807895,0,0.0648107737188361,1.0498410462955,0,0.0348135294503549,-0.730790794589246,-0.239828636899537,0,0.0788013528114092,0.268520543990476,0,0,-0.0294040210589335,0.123619818308521,0.145476586533315,0.00065471897723812,0,0.112138969672362,0,0,0.578101549853921,0,0.261285171457327,0,0.20326475509102,0,0,0,0.475599683857083,0,0,0,0.0394006764057046,0,-0.285389506714712,0.162034660421688,0,0,0,0,0,0,0,-0.0241060230789031,0.296223566124916,0,0,0,0,0,0,0,0,0.383940188373546,0,0,0.228761736085609,0.0467170131802879,0,0.481109188611316,0.000379913889362419,0.0788013528114092,0,0,0.8512972203319,0,0,-0.0231034151133159,0,0,0,0,0,0,0.0163316568155212,0,0,0,0.0788013528114092,0,0,0.13093963104475,-0.329437017601784,0,0.145476586533315,0,0,0,0,0,-0.196031945394681,0,0.20326475509102,0,0,0.0315922128243376,0,0,0,-0.0259950319777473,0,-0.081516677274977,0.145476586533315,0,0,0,0,0.0788013528114092,0.251790386181492,0.0727382932666575,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131845004302925,0.201189065949671,0.0539706400419656,-0.11969748155701,0,0,0.1326383158321,0,0,0,0,0,0,0.206459417900015,0,0,0,0,0,0,0,0,0.10163237754551,0,0,0,0,0,0,0,0,0,0.378880158995573,0,0,0,0,0,0.127129358540099,0.374537031083026,0,0,0,0,0,0,0,0.648354574356043,0,0,0.295711690918082,0,0.0629509324133654,0.0776689988515979,0.0788013528114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|rna_box=108 | |rna_box=108 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 77: | ||
|rna_weight_ug=98.754 | |rna_weight_ug=98.754 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB0983 | |sample_cell_catalog=RCB0983 | ||
|sample_cell_line=ECC10 | |sample_cell_line=ECC10 | ||
| Line 69: | Line 90: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;8.69106740994447e-265!GO:0043226;organelle;1.43218727190661e-231!GO:0043229;intracellular organelle;1.04472630872205e-230!GO:0043227;membrane-bound organelle;1.15467154948572e-224!GO:0043231;intracellular membrane-bound organelle;2.01569008974945e-224!GO:0044422;organelle part;1.1930954711503e-141!GO:0044446;intracellular organelle part;6.01327953161243e-140!GO:0005737;cytoplasm;2.34828648588956e-137!GO:0005634;nucleus;1.32412211262587e-124!GO:0044237;cellular metabolic process;1.6708128688583e-99!GO:0044238;primary metabolic process;4.19602405787278e-99!GO:0032991;macromolecular complex;1.69898400111905e-95!GO:0043170;macromolecule metabolic process;7.90866793890639e-94!GO:0044444;cytoplasmic part;2.63070561325705e-92!GO:0044428;nuclear part;5.4845640059967e-83!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.1936128191724e-75!GO:0043233;organelle lumen;3.1936128191724e-75!GO:0031974;membrane-enclosed lumen;3.1936128191724e-75!GO:0030529;ribonucleoprotein complex;4.34935083063813e-75!GO:0043283;biopolymer metabolic process;5.53156598989079e-73!GO:0003723;RNA binding;6.96150260525752e-71!GO:0010467;gene expression;2.15828753313833e-70!GO:0005515;protein binding;5.04010281933158e-57!GO:0005739;mitochondrion;3.56134144541401e-56!GO:0006396;RNA processing;1.77724125158956e-52!GO:0031981;nuclear lumen;7.95717686201708e-51!GO:0003676;nucleic acid binding;1.10728813843482e-50!GO:0043234;protein complex;5.32621925490799e-50!GO:0016070;RNA metabolic process;5.57220675752835e-46!GO:0016043;cellular component organization and biogenesis;7.71331584853093e-46!GO:0016071;mRNA metabolic process;1.62906889117298e-44!GO:0005840;ribosome;2.69016713006654e-42!GO:0006259;DNA metabolic process;1.43227508783389e-41!GO:0006397;mRNA processing;3.53823343916153e-40!GO:0044429;mitochondrial part;4.12155645194161e-40!GO:0031967;organelle envelope;1.04743310317091e-39!GO:0031975;envelope;2.61726545132022e-39!GO:0006996;organelle organization and biogenesis;4.1640884103693e-39!GO:0033036;macromolecule localization;7.13878705434295e-39!GO:0008380;RNA splicing;9.86774660362737e-39!GO:0031090;organelle membrane;3.91553058105061e-38!GO:0015031;protein transport;1.15221771510508e-37!GO:0006412;translation;1.3900719816585e-37!GO:0043228;non-membrane-bound organelle;1.40354738984033e-37!GO:0043232;intracellular non-membrane-bound organelle;1.40354738984033e-37!GO:0003735;structural constituent of ribosome;1.0286263542111e-36!GO:0008104;protein localization;2.76865966102411e-34!GO:0005654;nucleoplasm;8.64118737673114e-34!GO:0045184;establishment of protein localization;1.94226674999182e-33!GO:0007049;cell cycle;3.73852945363573e-33!GO:0033279;ribosomal subunit;5.41357009257117e-33!GO:0046907;intracellular transport;6.23506607644015e-33!GO:0000166;nucleotide binding;3.27144933261909e-29!GO:0019538;protein metabolic process;6.86453333042595e-29!GO:0044451;nucleoplasm part;7.50702038557431e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.64352319373946e-27!GO:0019866;organelle inner membrane;2.87350394390871e-27!GO:0044249;cellular biosynthetic process;3.81934879212025e-27!GO:0005829;cytosol;9.58202648354424e-27!GO:0044267;cellular protein metabolic process;9.98379262452021e-27!GO:0005740;mitochondrial envelope;3.65993055254069e-26!GO:0006886;intracellular protein transport;3.76341275400825e-26!GO:0044260;cellular macromolecule metabolic process;4.01174344477958e-26!GO:0005681;spliceosome;1.00920899644262e-25!GO:0065003;macromolecular complex assembly;1.09437871128762e-25!GO:0009058;biosynthetic process;5.32015693025357e-25!GO:0031966;mitochondrial membrane;6.32317296458064e-25!GO:0006974;response to DNA damage stimulus;7.47630056125121e-25!GO:0009059;macromolecule biosynthetic process;1.82853470135595e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.91105329544836e-24!GO:0005743;mitochondrial inner membrane;2.3158623357172e-24!GO:0022402;cell cycle process;6.24254809958725e-24!GO:0051649;establishment of cellular localization;9.01125115156312e-24!GO:0005694;chromosome;4.04669478497129e-23!GO:0051641;cellular localization;4.8609472514396e-23!GO:0016462;pyrophosphatase activity;3.63889860750585e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.93833278763225e-22!GO:0006281;DNA repair;4.5505076932931e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;5.1651216872606e-22!GO:0022607;cellular component assembly;5.50327854870057e-22!GO:0017111;nucleoside-triphosphatase activity;1.00597963995887e-21!GO:0006119;oxidative phosphorylation;1.04399529486423e-21!GO:0032553;ribonucleotide binding;4.6893933573225e-21!GO:0032555;purine ribonucleotide binding;4.6893933573225e-21!GO:0000278;mitotic cell cycle;1.18663340945612e-20!GO:0006260;DNA replication;4.87515057510403e-20!GO:0044445;cytosolic part;7.537299883502e-20!GO:0017076;purine nucleotide binding;1.12229690740364e-19!GO:0044427;chromosomal part;1.29113355301734e-19!GO:0051276;chromosome organization and biogenesis;4.55785265852688e-19!GO:0008134;transcription factor binding;1.66830619962141e-18!GO:0044455;mitochondrial membrane part;2.60912935623206e-18!GO:0005524;ATP binding;4.66304599394941e-18!GO:0015934;large ribosomal subunit;7.66324797841042e-18!GO:0031980;mitochondrial lumen;8.90939431739677e-18!GO:0005759;mitochondrial matrix;8.90939431739677e-18!GO:0051301;cell division;1.60747507367176e-17!GO:0016874;ligase activity;1.74806735822395e-17!GO:0032559;adenyl ribonucleotide binding;1.90587837198069e-17!GO:0019222;regulation of metabolic process;2.55545232413911e-17!GO:0022618;protein-RNA complex assembly;3.22408446181328e-17!GO:0006457;protein folding;5.71755082898504e-17!GO:0009719;response to endogenous stimulus;7.20101874946463e-17!GO:0022403;cell cycle phase;1.02238830086288e-16!GO:0031965;nuclear membrane;2.02416510622009e-16!GO:0015935;small ribosomal subunit;3.38507263187786e-16!GO:0006512;ubiquitin cycle;4.24790515323311e-16!GO:0005746;mitochondrial respiratory chain;4.98709506145729e-16!GO:0030554;adenyl nucleotide binding;5.72737294385483e-16!GO:0000087;M phase of mitotic cell cycle;5.85896628786784e-16!GO:0005730;nucleolus;6.13026008963351e-16!GO:0007067;mitosis;7.22766261208648e-16!GO:0006350;transcription;1.10049058273106e-15!GO:0050794;regulation of cellular process;1.90926613609512e-15!GO:0006325;establishment and/or maintenance of chromatin architecture;5.26121270487367e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;5.98436109962642e-15!GO:0000375;RNA splicing, via transesterification reactions;5.98436109962642e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.98436109962642e-15!GO:0031323;regulation of cellular metabolic process;6.21916541907664e-15!GO:0050136;NADH dehydrogenase (quinone) activity;6.60161866073445e-15!GO:0003954;NADH dehydrogenase activity;6.60161866073445e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.60161866073445e-15!GO:0015630;microtubule cytoskeleton;7.16307463328181e-15!GO:0016887;ATPase activity;8.05004539468131e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.00968089649191e-14!GO:0006323;DNA packaging;2.50993099516294e-14!GO:0005635;nuclear envelope;3.17347333214156e-14!GO:0006605;protein targeting;4.25219446059934e-14!GO:0012505;endomembrane system;5.94641161840715e-14!GO:0006366;transcription from RNA polymerase II promoter;6.5588484516695e-14!GO:0032774;RNA biosynthetic process;7.58647044266364e-14!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.87638244234765e-14!GO:0042623;ATPase activity, coupled;1.13304257931912e-13!GO:0006351;transcription, DNA-dependent;1.16878413877201e-13!GO:0044453;nuclear membrane part;1.21344084609775e-13!GO:0000279;M phase;1.83748978393384e-13!GO:0016604;nuclear body;1.98425537291891e-13!GO:0010468;regulation of gene expression;2.75882382140381e-13!GO:0042775;organelle ATP synthesis coupled electron transport;3.29301652283263e-13!GO:0042773;ATP synthesis coupled electron transport;3.29301652283263e-13!GO:0008135;translation factor activity, nucleic acid binding;4.07892338697144e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.31894841187133e-13!GO:0030964;NADH dehydrogenase complex (quinone);5.31235065905611e-13!GO:0045271;respiratory chain complex I;5.31235065905611e-13!GO:0005747;mitochondrial respiratory chain complex I;5.31235065905611e-13!GO:0044265;cellular macromolecule catabolic process;7.89223282520963e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.8481360840771e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;2.27023356890327e-12!GO:0006511;ubiquitin-dependent protein catabolic process;2.7196485609476e-12!GO:0019941;modification-dependent protein catabolic process;3.0939537622025e-12!GO:0043632;modification-dependent macromolecule catabolic process;3.0939537622025e-12!GO:0016568;chromatin modification;4.17680758266625e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.58573987748567e-12!GO:0044257;cellular protein catabolic process;5.28616118365452e-12!GO:0000502;proteasome complex (sensu Eukaryota);5.48299630443993e-12!GO:0045449;regulation of transcription;7.21302122989892e-12!GO:0051726;regulation of cell cycle;7.55170033176916e-12!GO:0051082;unfolded protein binding;8.52473560006989e-12!GO:0048770;pigment granule;1.10055710927444e-11!GO:0042470;melanosome;1.10055710927444e-11!GO:0006403;RNA localization;1.1619829368367e-11!GO:0004386;helicase activity;1.28956467525188e-11!GO:0016192;vesicle-mediated transport;1.65471804729332e-11!GO:0050657;nucleic acid transport;1.71571583280975e-11!GO:0051236;establishment of RNA localization;1.71571583280975e-11!GO:0050658;RNA transport;1.71571583280975e-11!GO:0000074;regulation of progression through cell cycle;2.12574548867443e-11!GO:0005761;mitochondrial ribosome;2.82956487515471e-11!GO:0000313;organellar ribosome;2.82956487515471e-11!GO:0003712;transcription cofactor activity;3.42142707512364e-11!GO:0050789;regulation of biological process;3.7150600561e-11!GO:0016607;nuclear speck;4.00631077405819e-11!GO:0006913;nucleocytoplasmic transport;4.01118387745202e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.52422482998046e-11!GO:0043285;biopolymer catabolic process;5.0924924611455e-11!GO:0006355;regulation of transcription, DNA-dependent;5.472698214159e-11!GO:0042254;ribosome biogenesis and assembly;5.98145254000624e-11!GO:0005643;nuclear pore;6.74826550205568e-11!GO:0051169;nuclear transport;8.08745469186065e-11!GO:0043412;biopolymer modification;8.15194053459724e-11!GO:0003743;translation initiation factor activity;1.03190857759393e-10!GO:0000785;chromatin;3.41016104220974e-10!GO:0048193;Golgi vesicle transport;3.6379345439672e-10!GO:0003677;DNA binding;3.71175512914795e-10!GO:0006261;DNA-dependent DNA replication;3.93727530149576e-10!GO:0006333;chromatin assembly or disassembly;4.23848451648493e-10!GO:0006446;regulation of translational initiation;5.33330192510805e-10!GO:0008565;protein transporter activity;6.23866542608884e-10!GO:0009057;macromolecule catabolic process;6.35682573282991e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.54695408884357e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.68556089444383e-10!GO:0051186;cofactor metabolic process;8.58573162757901e-10!GO:0044248;cellular catabolic process;9.66849715796503e-10!GO:0006413;translational initiation;1.06532134008537e-09!GO:0006163;purine nucleotide metabolic process;1.268747816271e-09!GO:0051028;mRNA transport;1.75442132690831e-09!GO:0005667;transcription factor complex;2.66764198946324e-09!GO:0030163;protein catabolic process;3.33062066550035e-09!GO:0008026;ATP-dependent helicase activity;3.34917315550494e-09!GO:0043687;post-translational protein modification;3.36692484437586e-09!GO:0006464;protein modification process;3.47232782299116e-09!GO:0009259;ribonucleotide metabolic process;4.03379358822001e-09!GO:0005874;microtubule;4.13351171320504e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.73453368363693e-09!GO:0006164;purine nucleotide biosynthetic process;7.15396329168469e-09!GO:0065002;intracellular protein transport across a membrane;1.04873501729219e-08!GO:0044432;endoplasmic reticulum part;1.13037870883814e-08!GO:0065004;protein-DNA complex assembly;1.17187548165235e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.34560391653109e-08!GO:0006399;tRNA metabolic process;1.5873435716797e-08!GO:0031324;negative regulation of cellular metabolic process;1.5873435716797e-08!GO:0009150;purine ribonucleotide metabolic process;1.5873435716797e-08!GO:0019829;cation-transporting ATPase activity;1.62229576215957e-08!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.68379046663645e-08!GO:0016564;transcription repressor activity;1.76008251760224e-08!GO:0000775;chromosome, pericentric region;1.8134752751117e-08!GO:0005783;endoplasmic reticulum;1.8449029142525e-08!GO:0000245;spliceosome assembly;1.99214018954173e-08!GO:0008639;small protein conjugating enzyme activity;2.10606106324238e-08!GO:0046930;pore complex;2.23037980256811e-08!GO:0043566;structure-specific DNA binding;3.51300698934051e-08!GO:0004842;ubiquitin-protein ligase activity;3.69651812947457e-08!GO:0017038;protein import;3.77456628467693e-08!GO:0006732;coenzyme metabolic process;4.53778664355805e-08!GO:0003697;single-stranded DNA binding;4.78016393128041e-08!GO:0009141;nucleoside triphosphate metabolic process;5.08628820114455e-08!GO:0005657;replication fork;5.40379427764424e-08!GO:0009260;ribonucleotide biosynthetic process;5.87784537158725e-08!GO:0009055;electron carrier activity;5.98021812604302e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.04327185676206e-08!GO:0015986;ATP synthesis coupled proton transport;7.0779703514771e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.0779703514771e-08!GO:0009199;ribonucleoside triphosphate metabolic process;7.36790064128801e-08!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.3757426365632e-08!GO:0009152;purine ribonucleotide biosynthetic process;8.47203847668537e-08!GO:0003682;chromatin binding;9.15950807324542e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.12210352123424e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.12210352123424e-07!GO:0019787;small conjugating protein ligase activity;1.16901516667645e-07!GO:0009060;aerobic respiration;1.18619350791906e-07!GO:0005794;Golgi apparatus;1.34076034895389e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.34529749106242e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.34529749106242e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.34529749106242e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.41676002190025e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.41676002190025e-07!GO:0032446;protein modification by small protein conjugation;1.54075651196913e-07!GO:0009892;negative regulation of metabolic process;1.71851393682856e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.17535511931595e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.17535511931595e-07!GO:0045333;cellular respiration;2.3067910012614e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.89597571207033e-07!GO:0006364;rRNA processing;2.95077255167129e-07!GO:0016567;protein ubiquitination;2.97495885009424e-07!GO:0016072;rRNA metabolic process;3.18906561356934e-07!GO:0043038;amino acid activation;3.24545157715328e-07!GO:0006418;tRNA aminoacylation for protein translation;3.24545157715328e-07!GO:0043039;tRNA aminoacylation;3.24545157715328e-07!GO:0016481;negative regulation of transcription;3.69378316511323e-07!GO:0016881;acid-amino acid ligase activity;3.79523552701654e-07!GO:0015078;hydrogen ion transmembrane transporter activity;4.15264564724586e-07!GO:0007017;microtubule-based process;4.24902345877865e-07!GO:0046034;ATP metabolic process;4.59928467746268e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.85088581472546e-07!GO:0015631;tubulin binding;4.89759226193166e-07!GO:0000075;cell cycle checkpoint;5.77109293948683e-07!GO:0007051;spindle organization and biogenesis;6.12473672164395e-07!GO:0005819;spindle;6.20051887078422e-07!GO:0006754;ATP biosynthetic process;7.1300500206704e-07!GO:0006753;nucleoside phosphate metabolic process;7.1300500206704e-07!GO:0016469;proton-transporting two-sector ATPase complex;8.75653795650036e-07!GO:0006793;phosphorus metabolic process;9.3256272107242e-07!GO:0006796;phosphate metabolic process;9.3256272107242e-07!GO:0016779;nucleotidyltransferase activity;9.32652774055675e-07!GO:0031988;membrane-bound vesicle;1.18764075323924e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.37738160509479e-06!GO:0045259;proton-transporting ATP synthase complex;1.46414622108138e-06!GO:0051188;cofactor biosynthetic process;1.68686641125839e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.95670088420531e-06!GO:0007010;cytoskeleton organization and biogenesis;2.41493371733888e-06!GO:0008094;DNA-dependent ATPase activity;2.6415142524183e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.81519917028063e-06!GO:0016023;cytoplasmic membrane-bound vesicle;3.19478768533085e-06!GO:0005813;centrosome;3.29829947065983e-06!GO:0007005;mitochondrion organization and biogenesis;3.89000130490551e-06!GO:0031982;vesicle;3.90281552686041e-06!GO:0016740;transferase activity;4.48824388388437e-06!GO:0003724;RNA helicase activity;4.69303149627917e-06!GO:0009117;nucleotide metabolic process;5.63790993800092e-06!GO:0016563;transcription activator activity;6.32328655753279e-06!GO:0005789;endoplasmic reticulum membrane;6.56023999583317e-06!GO:0005815;microtubule organizing center;6.71438882261375e-06!GO:0016310;phosphorylation;7.52332055094734e-06!GO:0006752;group transfer coenzyme metabolic process;7.57150287681216e-06!GO:0051168;nuclear export;8.64070415497874e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.54070687826528e-06!GO:0005793;ER-Golgi intermediate compartment;9.55929641381316e-06!GO:0016363;nuclear matrix;9.55929641381316e-06!GO:0006461;protein complex assembly;9.91900173559769e-06!GO:0008017;microtubule binding;1.04727097824389e-05!GO:0006606;protein import into nucleus;1.05556928790658e-05!GO:0065007;biological regulation;1.05952650674738e-05!GO:0031410;cytoplasmic vesicle;1.06090892507005e-05!GO:0051329;interphase of mitotic cell cycle;1.09536065890879e-05!GO:0006099;tricarboxylic acid cycle;1.10483079485683e-05!GO:0046356;acetyl-CoA catabolic process;1.10483079485683e-05!GO:0005768;endosome;1.1057111475006e-05!GO:0003924;GTPase activity;1.1491376656208e-05!GO:0000151;ubiquitin ligase complex;1.19650673642794e-05!GO:0009108;coenzyme biosynthetic process;1.39734554121494e-05!GO:0045786;negative regulation of progression through cell cycle;1.41962412466034e-05!GO:0003714;transcription corepressor activity;1.47071549293384e-05!GO:0051170;nuclear import;1.55838937414764e-05!GO:0003729;mRNA binding;1.80992591890511e-05!GO:0051325;interphase;1.8548088080037e-05!GO:0048471;perinuclear region of cytoplasm;1.90328751043185e-05!GO:0003899;DNA-directed RNA polymerase activity;1.97581199151969e-05!GO:0005525;GTP binding;2.2068336943404e-05!GO:0043623;cellular protein complex assembly;2.40449656697671e-05!GO:0009056;catabolic process;2.60288976430144e-05!GO:0003713;transcription coactivator activity;2.81199502853446e-05!GO:0006084;acetyl-CoA metabolic process;2.81414975333361e-05!GO:0003684;damaged DNA binding;2.85484537369159e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;3.00632316777986e-05!GO:0006888;ER to Golgi vesicle-mediated transport;4.00522917417802e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;4.25486750438831e-05!GO:0048475;coated membrane;4.71015900606424e-05!GO:0030117;membrane coat;4.71015900606424e-05!GO:0045892;negative regulation of transcription, DNA-dependent;4.78281476244869e-05!GO:0030120;vesicle coat;5.67540758148337e-05!GO:0030662;coated vesicle membrane;5.67540758148337e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;5.77619046740189e-05!GO:0006613;cotranslational protein targeting to membrane;5.89033760357843e-05!GO:0051427;hormone receptor binding;6.45653192225163e-05!GO:0009109;coenzyme catabolic process;6.58202812559975e-05!GO:0031497;chromatin assembly;7.02575185180656e-05!GO:0006334;nucleosome assembly;8.32878243389678e-05!GO:0005762;mitochondrial large ribosomal subunit;8.80760966354713e-05!GO:0000315;organellar large ribosomal subunit;8.80760966354713e-05!GO:0008654;phospholipid biosynthetic process;8.91764705447937e-05!GO:0048523;negative regulation of cellular process;9.77779202514344e-05!GO:0044440;endosomal part;0.000103563857124599!GO:0010008;endosome membrane;0.000103563857124599!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000104893015820778!GO:0016859;cis-trans isomerase activity;0.000115372933310653!GO:0006383;transcription from RNA polymerase III promoter;0.000121550632689977!GO:0005798;Golgi-associated vesicle;0.000122489560507948!GO:0035257;nuclear hormone receptor binding;0.000131147716318346!GO:0004674;protein serine/threonine kinase activity;0.000136600761465296!GO:0003690;double-stranded DNA binding;0.000137078633437577!GO:0007059;chromosome segregation;0.000151289789246895!GO:0016741;transferase activity, transferring one-carbon groups;0.000154568976834881!GO:0006338;chromatin remodeling;0.0001561645942371!GO:0008168;methyltransferase activity;0.000166571328698947!GO:0006352;transcription initiation;0.000182654802298321!GO:0000776;kinetochore;0.000189845363835025!GO:0012501;programmed cell death;0.000191350917088072!GO:0003678;DNA helicase activity;0.0002044298474498!GO:0008186;RNA-dependent ATPase activity;0.000206305987033212!GO:0006310;DNA recombination;0.000207362216125916!GO:0006915;apoptosis;0.000218919838533113!GO:0005788;endoplasmic reticulum lumen;0.000218919838533113!GO:0006302;double-strand break repair;0.000240306540177953!GO:0031124;mRNA 3'-end processing;0.000240705673552241!GO:0005839;proteasome core complex (sensu Eukaryota);0.000241546482717765!GO:0032561;guanyl ribonucleotide binding;0.000243650274145843!GO:0019001;guanyl nucleotide binding;0.000243650274145843!GO:0006414;translational elongation;0.000248124433877342!GO:0005637;nuclear inner membrane;0.000275693666235898!GO:0016853;isomerase activity;0.000286679219426903!GO:0019899;enzyme binding;0.000289254662430534!GO:0051187;cofactor catabolic process;0.000291437226867167!GO:0004527;exonuclease activity;0.000319457262333332!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000321850964449752!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000327453289307908!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000367422491757834!GO:0015399;primary active transmembrane transporter activity;0.000367422491757834!GO:0005876;spindle microtubule;0.000412589794108716!GO:0007264;small GTPase mediated signal transduction;0.000438104007305829!GO:0051052;regulation of DNA metabolic process;0.000449872922362403!GO:0007052;mitotic spindle organization and biogenesis;0.000464622650381474!GO:0000059;protein import into nucleus, docking;0.000467847357984467!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000529395304666436!GO:0032508;DNA duplex unwinding;0.000565555298953593!GO:0032392;DNA geometric change;0.000565555298953593!GO:0016787;hydrolase activity;0.000584389727056291!GO:0015980;energy derivation by oxidation of organic compounds;0.000597763564817984!GO:0004004;ATP-dependent RNA helicase activity;0.000613571817090051!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000624255062005766!GO:0004298;threonine endopeptidase activity;0.000688967460275066!GO:0007093;mitotic cell cycle checkpoint;0.000733961769731672!GO:0043021;ribonucleoprotein binding;0.00074761983090444!GO:0031123;RNA 3'-end processing;0.000763422385972565!GO:0000314;organellar small ribosomal subunit;0.000810882870900213!GO:0005763;mitochondrial small ribosomal subunit;0.000810882870900213!GO:0006612;protein targeting to membrane;0.000898433315062967!GO:0005770;late endosome;0.000975260271715963!GO:0046474;glycerophospholipid biosynthetic process;0.000975260271715963!GO:0031072;heat shock protein binding;0.000998495479170353!GO:0043596;nuclear replication fork;0.00101386237494091!GO:0008219;cell death;0.0010226607785462!GO:0016265;death;0.0010226607785462!GO:0048519;negative regulation of biological process;0.00103746452675953!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00103746452675953!GO:0006378;mRNA polyadenylation;0.00112739773100231!GO:0043681;protein import into mitochondrion;0.00122072041961717!GO:0006268;DNA unwinding during replication;0.001310062559062!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00131937568371812!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00131937568371812!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00131937568371812!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00134256917983658!GO:0005083;small GTPase regulator activity;0.00135163088386315!GO:0006818;hydrogen transport;0.00145228290685264!GO:0003702;RNA polymerase II transcription factor activity;0.00146582501277024!GO:0051246;regulation of protein metabolic process;0.00158760415989898!GO:0005875;microtubule associated complex;0.00166548855197332!GO:0044431;Golgi apparatus part;0.00173311556465915!GO:0045045;secretory pathway;0.00176688545713988!GO:0006091;generation of precursor metabolites and energy;0.00184363189708963!GO:0006405;RNA export from nucleus;0.00194330458106046!GO:0051920;peroxiredoxin activity;0.00203069040086492!GO:0000228;nuclear chromosome;0.00205749861129677!GO:0008270;zinc ion binding;0.00211013755788989!GO:0005684;U2-dependent spliceosome;0.00219345615169133!GO:0009165;nucleotide biosynthetic process;0.00221222394260012!GO:0005048;signal sequence binding;0.00239983066109166!GO:0046489;phosphoinositide biosynthetic process;0.00240882401918365!GO:0030133;transport vesicle;0.00248117348342256!GO:0015992;proton transport;0.00254630856393181!GO:0043492;ATPase activity, coupled to movement of substances;0.00258244834119774!GO:0004860;protein kinase inhibitor activity;0.00263929532355197!GO:0051087;chaperone binding;0.00277393269735267!GO:0030867;rough endoplasmic reticulum membrane;0.00289210764350204!GO:0000792;heterochromatin;0.00292377426457747!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0029258012056668!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0029258012056668!GO:0022890;inorganic cation transmembrane transporter activity;0.0029340821191842!GO:0006611;protein export from nucleus;0.00296904884970779!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00304646846263942!GO:0008092;cytoskeletal protein binding;0.00318466234291322!GO:0006401;RNA catabolic process;0.00330944906138132!GO:0006650;glycerophospholipid metabolic process;0.00339444378066186!GO:0005769;early endosome;0.00339453493173849!GO:0032259;methylation;0.00341522490782987!GO:0000118;histone deacetylase complex;0.00343951975423646!GO:0006626;protein targeting to mitochondrion;0.00350112173921125!GO:0045454;cell redox homeostasis;0.00355017155175635!GO:0008022;protein C-terminus binding;0.00362608119750661!GO:0006270;DNA replication initiation;0.00363037688579914!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00373890279044132!GO:0006839;mitochondrial transport;0.00379360729527334!GO:0006402;mRNA catabolic process;0.00379408655843972!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00397397690518432!GO:0032200;telomere organization and biogenesis;0.00424974960060534!GO:0000723;telomere maintenance;0.00424974960060534!GO:0006891;intra-Golgi vesicle-mediated transport;0.00455437069514741!GO:0004518;nuclease activity;0.00462575120308219!GO:0000910;cytokinesis;0.00479032558728472!GO:0030880;RNA polymerase complex;0.00480250587118739!GO:0030118;clathrin coat;0.00508189563792704!GO:0043284;biopolymer biosynthetic process;0.00514910022518012!GO:0043631;RNA polyadenylation;0.00521033428587886!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00523887602153062!GO:0016251;general RNA polymerase II transcription factor activity;0.00525980261898629!GO:0042981;regulation of apoptosis;0.00528191000051544!GO:0043067;regulation of programmed cell death;0.00568074247643908!GO:0042393;histone binding;0.00587562668826098!GO:0043414;biopolymer methylation;0.00606557906118032!GO:0006595;polyamine metabolic process;0.00607052233902141!GO:0008276;protein methyltransferase activity;0.00617698375604276!GO:0007088;regulation of mitosis;0.00617698375604276!GO:0019887;protein kinase regulator activity;0.00627664923783026!GO:0030521;androgen receptor signaling pathway;0.00663109005648939!GO:0048500;signal recognition particle;0.00668989609862029!GO:0009116;nucleoside metabolic process;0.00677800405500993!GO:0008033;tRNA processing;0.00693734195455851!GO:0000922;spindle pole;0.00706928833405329!GO:0043601;nuclear replisome;0.0071444904282798!GO:0030894;replisome;0.0071444904282798!GO:0006284;base-excision repair;0.00723238621196252!GO:0005885;Arp2/3 protein complex;0.00747078063774308!GO:0040029;regulation of gene expression, epigenetic;0.0075957564873211!GO:0008312;7S RNA binding;0.00775424009239261!GO:0048487;beta-tubulin binding;0.00778454253338258!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00810458022768039!GO:0000428;DNA-directed RNA polymerase complex;0.00810458022768039!GO:0051287;NAD binding;0.00812310839295576!GO:0003711;transcription elongation regulator activity;0.00813549660664066!GO:0030036;actin cytoskeleton organization and biogenesis;0.00852244052655221!GO:0051252;regulation of RNA metabolic process;0.00856092429116318!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00894970139511938!GO:0033116;ER-Golgi intermediate compartment membrane;0.00894970139511938!GO:0000049;tRNA binding;0.00895462331356009!GO:0006607;NLS-bearing substrate import into nucleus;0.00913918410512156!GO:0051540;metal cluster binding;0.00914952297275045!GO:0051536;iron-sulfur cluster binding;0.00914952297275045!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00922229579317064!GO:0016569;covalent chromatin modification;0.00929437178081551!GO:0016272;prefoldin complex;0.00929437178081551!GO:0016301;kinase activity;0.00931612397398523!GO:0046966;thyroid hormone receptor binding;0.00952723344961278!GO:0030384;phosphoinositide metabolic process;0.00953168766298233!GO:0012506;vesicle membrane;0.00982891428565065!GO:0045893;positive regulation of transcription, DNA-dependent;0.00995766938917195!GO:0007004;telomere maintenance via telomerase;0.0100225692343776!GO:0006505;GPI anchor metabolic process;0.0100299056714555!GO:0030663;COPI coated vesicle membrane;0.0101558952440452!GO:0030126;COPI vesicle coat;0.0101558952440452!GO:0031628;opioid receptor binding;0.0105483029894527!GO:0031852;mu-type opioid receptor binding;0.0105483029894527!GO:0009303;rRNA transcription;0.0106439959087161!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0109372427655322!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0110303121581057!GO:0007021;tubulin folding;0.011431335289271!GO:0051789;response to protein stimulus;0.0114901767657206!GO:0006986;response to unfolded protein;0.0114901767657206!GO:0032594;protein transport within lipid bilayer;0.0116167493802442!GO:0032907;transforming growth factor-beta3 production;0.0116167493802442!GO:0032596;protein transport into lipid raft;0.0116167493802442!GO:0032910;regulation of transforming growth factor-beta3 production;0.0116167493802442!GO:0032595;B cell receptor transport within lipid bilayer;0.0116167493802442!GO:0033606;chemokine receptor transport within lipid bilayer;0.0116167493802442!GO:0032600;chemokine receptor transport out of lipid raft;0.0116167493802442!GO:0032599;protein transport out of lipid raft;0.0116167493802442!GO:0032597;B cell receptor transport into lipid raft;0.0116167493802442!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0116167493802442!GO:0006376;mRNA splice site selection;0.0117576396335514!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0117576396335514!GO:0000139;Golgi membrane;0.0120758446945236!GO:0045941;positive regulation of transcription;0.0121544358184!GO:0019843;rRNA binding;0.0122710180709693!GO:0008139;nuclear localization sequence binding;0.0123101282556842!GO:0007050;cell cycle arrest;0.012483849777417!GO:0031252;leading edge;0.0126904104435781!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0128235540975499!GO:0015002;heme-copper terminal oxidase activity;0.0128235540975499!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0128235540975499!GO:0004129;cytochrome-c oxidase activity;0.0128235540975499!GO:0000339;RNA cap binding;0.0128235540975499!GO:0019867;outer membrane;0.0130931771063938!GO:0046467;membrane lipid biosynthetic process;0.0131806061105981!GO:0003746;translation elongation factor activity;0.0136235166725674!GO:0030695;GTPase regulator activity;0.0136493666813499!GO:0019210;kinase inhibitor activity;0.0138465343784958!GO:0005869;dynactin complex;0.0143871720484816!GO:0030658;transport vesicle membrane;0.0145446608352916!GO:0000725;recombinational repair;0.0145446608352916!GO:0000724;double-strand break repair via homologous recombination;0.0145446608352916!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0150145570350998!GO:0045047;protein targeting to ER;0.0150145570350998!GO:0031902;late endosome membrane;0.0152905810057679!GO:0031577;spindle checkpoint;0.0155865243423271!GO:0005832;chaperonin-containing T-complex;0.0156368508354786!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0159169592244583!GO:0016407;acetyltransferase activity;0.0161884607127505!GO:0005773;vacuole;0.0164687122550128!GO:0006497;protein amino acid lipidation;0.0166356583701319!GO:0005652;nuclear lamina;0.0168908368570609!GO:0019904;protein domain specific binding;0.0171149937781869!GO:0005938;cell cortex;0.0172632776461955!GO:0019207;kinase regulator activity;0.0174597228783227!GO:0042158;lipoprotein biosynthetic process;0.0174755724452896!GO:0006275;regulation of DNA replication;0.017814078345541!GO:0044454;nuclear chromosome part;0.0183615541914479!GO:0031570;DNA integrity checkpoint;0.0184602416001092!GO:0051539;4 iron, 4 sulfur cluster binding;0.0185278607084354!GO:0044452;nucleolar part;0.0186078014072892!GO:0006289;nucleotide-excision repair;0.019394438437697!GO:0035258;steroid hormone receptor binding;0.019394438437697!GO:0005905;coated pit;0.0197952495738773!GO:0000819;sister chromatid segregation;0.0198222580690616!GO:0031968;organelle outer membrane;0.0198526443037271!GO:0006506;GPI anchor biosynthetic process;0.0205724137884515!GO:0006144;purine base metabolic process;0.0206939804661397!GO:0043189;H4/H2A histone acetyltransferase complex;0.0209993344677722!GO:0007006;mitochondrial membrane organization and biogenesis;0.0212327856407845!GO:0035267;NuA4 histone acetyltransferase complex;0.0216464013850162!GO:0005669;transcription factor TFIID complex;0.0219917004300598!GO:0030660;Golgi-associated vesicle membrane;0.0221833580667569!GO:0004003;ATP-dependent DNA helicase activity;0.0223621236772536!GO:0044433;cytoplasmic vesicle part;0.0223621236772536!GO:0030176;integral to endoplasmic reticulum membrane;0.0227989297249447!GO:0006672;ceramide metabolic process;0.0229061438479149!GO:0016491;oxidoreductase activity;0.0230806627935661!GO:0000082;G1/S transition of mitotic cell cycle;0.0231394489646132!GO:0007265;Ras protein signal transduction;0.0231394489646132!GO:0065009;regulation of a molecular function;0.0244677468878204!GO:0008143;poly(A) binding;0.0246389098910952!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0248108843612263!GO:0000070;mitotic sister chromatid segregation;0.0251614223716653!GO:0044450;microtubule organizing center part;0.0252940344118577!GO:0006220;pyrimidine nucleotide metabolic process;0.025383104017394!GO:0016126;sterol biosynthetic process;0.0259688799749539!GO:0030137;COPI-coated vesicle;0.0259878643955292!GO:0030518;steroid hormone receptor signaling pathway;0.0263886811905124!GO:0043069;negative regulation of programmed cell death;0.0266104186776705!GO:0030659;cytoplasmic vesicle membrane;0.0266104186776705!GO:0030029;actin filament-based process;0.0281036597074875!GO:0006730;one-carbon compound metabolic process;0.0285714124964845!GO:0043022;ribosome binding;0.0285763578514401!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0285763578514401!GO:0016570;histone modification;0.0291531858266979!GO:0016202;regulation of striated muscle development;0.0292300396829214!GO:0043066;negative regulation of apoptosis;0.0293025268384934!GO:0030131;clathrin adaptor complex;0.0296004712985819!GO:0000123;histone acetyltransferase complex;0.0301554310743617!GO:0030119;AP-type membrane coat adaptor complex;0.0307625970380692!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0307625970380692!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0321933255326469!GO:0008536;Ran GTPase binding;0.0323773084906286!GO:0008180;signalosome;0.0326965152852486!GO:0046519;sphingoid metabolic process;0.0332103151388575!GO:0046914;transition metal ion binding;0.0335368846852361!GO:0043488;regulation of mRNA stability;0.0335368846852361!GO:0043487;regulation of RNA stability;0.0335368846852361!GO:0022406;membrane docking;0.0335368846852361!GO:0048278;vesicle docking;0.0335368846852361!GO:0047485;protein N-terminus binding;0.0335368846852361!GO:0008637;apoptotic mitochondrial changes;0.0338288888387024!GO:0045603;positive regulation of endothelial cell differentiation;0.034055164125809!GO:0006301;postreplication repair;0.0349885997295446!GO:0000781;chromosome, telomeric region;0.0360441623495469!GO:0030140;trans-Golgi network transport vesicle;0.0364076684061815!GO:0004532;exoribonuclease activity;0.0366011579924646!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0366011579924646!GO:0042770;DNA damage response, signal transduction;0.0366475637112869!GO:0005663;DNA replication factor C complex;0.0368342635911647!GO:0005741;mitochondrial outer membrane;0.0368695945155703!GO:0016585;chromatin remodeling complex;0.0383192991800454!GO:0006541;glutamine metabolic process;0.038416857560768!GO:0005784;translocon complex;0.0384498986803041!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0394878640526748!GO:0051059;NF-kappaB binding;0.0398248322012848!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0409718159633432!GO:0042791;5S class rRNA transcription;0.0410872387708332!GO:0000127;transcription factor TFIIIC complex;0.0410872387708332!GO:0042797;tRNA transcription from RNA polymerase III promoter;0.0410872387708332!GO:0046128;purine ribonucleoside metabolic process;0.0415210298247029!GO:0042278;purine nucleoside metabolic process;0.0415210298247029!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0418302410059378!GO:0008250;oligosaccharyl transferase complex;0.0418302410059378!GO:0006379;mRNA cleavage;0.0422747418136356!GO:0032039;integrator complex;0.0423816809116754!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0427108397375037!GO:0051098;regulation of binding;0.0434943290173066!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0434943290173066!GO:0055083;monovalent inorganic anion homeostasis;0.0434943290173066!GO:0055064;chloride ion homeostasis;0.0434943290173066!GO:0030644;cellular chloride ion homeostasis;0.0434943290173066!GO:0045502;dynein binding;0.0436229008360938!GO:0051056;regulation of small GTPase mediated signal transduction;0.0441420671985804!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0441748608856482!GO:0017134;fibroblast growth factor binding;0.0443706777998749!GO:0008408;3'-5' exonuclease activity;0.0448807439957271!GO:0006904;vesicle docking during exocytosis;0.0454633553786211!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.046051043221276!GO:0000077;DNA damage checkpoint;0.0465273912434484!GO:0042769;DNA damage response, detection of DNA damage;0.0472383700551379!GO:0005791;rough endoplasmic reticulum;0.0473843306196883!GO:0007018;microtubule-based movement;0.0485359155790169!GO:0033673;negative regulation of kinase activity;0.0485359155790169!GO:0006469;negative regulation of protein kinase activity;0.0485359155790169!GO:0006278;RNA-dependent DNA replication;0.048774293960511!GO:0008097;5S rRNA binding;0.0488795564505264!GO:0043433;negative regulation of transcription factor activity;0.0490138305474236!GO:0019238;cyclohydrolase activity;0.0490138305474236!GO:0003727;single-stranded RNA binding;0.0490138305474236!GO:0006892;post-Golgi vesicle-mediated transport;0.049025072870099!GO:0046578;regulation of Ras protein signal transduction;0.0492697763572304!GO:0004523;ribonuclease H activity;0.0495064566715512!GO:0004448;isocitrate dehydrogenase activity;0.0495064566715512!GO:0003725;double-stranded RNA binding;0.0499703576546109 | |||
|sample_id=10610 | |sample_id=10610 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 98: | ||
|sample_tissue=stomach | |sample_tissue=stomach | ||
|top_motifs=ONECUT1,2:3.14935770402;VSX1,2:3.14580869437;LEF1_TCF7_TCF7L1,2:2.76139589715;PITX1..3:2.50106487963;IKZF2:2.42282378477;BPTF:2.30279448467;NANOG:2.15727535231;POU6F1:2.00476787876;SOX{8,9,10}:1.83407093294;TEF:1.78244042092;RREB1:1.78038289067;ZBTB16:1.77148711479;FOXP1:1.75504310739;YY1:1.74327808963;RFX2..5_RFXANK_RFXAP:1.73465904265;GATA4:1.68843110377;HOX{A6,A7,B6,B7}:1.67445397745;FOXM1:1.57393569697;TOPORS:1.57080561851;XCPE1{core}:1.56553941665;NFY{A,B,C}:1.54847330889;ZNF143:1.49689900131;EN1,2:1.46308064267;SNAI1..3:1.45970826161;SP1:1.45358440132;POU1F1:1.44300940079;MED-1{core}:1.42853189097;GFI1:1.41556608509;RFX1:1.40441444951;E2F1..5:1.39303344561;NRF1:1.36450481898;FOXD3:1.35993098313;ZEB1:1.33687774892;LMO2:1.33627123575;LHX3,4:1.32817596576;NKX6-1,2:1.28919868928;PAX8:1.26223967203;ARID5B:1.24528927762;ZFP161:1.21068669216;ATF4:1.19098052618;NKX2-3_NKX2-5:1.12154145678;ELK1,4_GABP{A,B1}:1.09650879339;PAX1,9:1.08649934613;SOX2:1.04699879911;PATZ1:1.01339795102;FOXL1:1.00075728813;CDC5L:0.919602578194;T:0.853064468532;TFAP2B:0.853006276794;CUX2:0.808085980655;RORA:0.751221450157;AIRE:0.744745031871;FOX{F1,F2,J1}:0.738763737935;ATF5_CREB3:0.722330657934;BREu{core}:0.709946164234;EVI1:0.709552144122;NKX3-1:0.708993058548;RBPJ:0.698966255162;ESRRA:0.66242798038;TFDP1:0.6555520903;ZBTB6:0.642150821944;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.635666973705;FOXO1,3,4:0.596249527017;MTE{core}:0.57950450796;HOX{A4,D4}:0.579469753594;STAT1,3:0.559980860116;HBP1_HMGB_SSRP1_UBTF:0.551765608255;CREB1:0.54606057077;MAZ:0.545438050675;ADNP_IRX_SIX_ZHX:0.544936464859;DBP:0.52798836292;REST:0.499745504424;ATF2:0.481739083566;TAL1_TCF{3,4,12}:0.472605692049;PBX1:0.456586925719;KLF4:0.448503853083;EGR1..3:0.445041943353;SOX17:0.415822875993;FOX{I1,J2}:0.413331714051;PRDM1:0.409647093256;MYB:0.378085472245;PRRX1,2:0.375873564212;POU5F1:0.367776761061;FOX{D1,D2}:0.365422398238;MZF1:0.334237309821;PAX5:0.333861243851;bHLH_family:0.316558638762;JUN:0.305555875232;PAX4:0.280826868094;NHLH1,2:0.266713694703;NFE2L1:0.244598033962;PAX3,7:0.225088062961;SOX5:0.219479571469;PDX1:0.19056464758;TLX2:0.149919686264;FOXA2:0.148753341219;HIC1:0.118488442312;UFEwm:0.116636796323;ZIC1..3:0.0977617094267;MYFfamily:0.0872202303822;MTF1:0.0807465775581;GTF2I:0.0609911799368;MYOD1:0.0605215343894;NR5A1,2:0.0603723426738;FOXN1:0.0307856648495;POU2F1..3:0.0176771026473;CDX1,2,4:-0.0105837785596;TLX1..3_NFIC{dimer}:-0.014314337329;ALX1:-0.0461875649459;SREBF1,2:-0.0809987502003;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.101321826055;ZNF423:-0.138135491616;FOXQ1:-0.191857368386;NKX2-1,4:-0.206268169761;NFIX:-0.26217465806;RXR{A,B,G}:-0.308213681522;HNF1A:-0.353889745653;GFI1B:-0.367265875681;SPIB:-0.368315055874;CRX:-0.382567907527;TFAP2{A,C}:-0.39776344525;STAT5{A,B}:-0.416810118886;HNF4A_NR2F1,2:-0.440712950744;AHR_ARNT_ARNT2:-0.455344343825;GATA6:-0.463250307086;NFE2:-0.499915620295;TBP:-0.504531753443;ZNF384:-0.517530276091;PAX2:-0.518386687333;HOX{A5,B5}:-0.525311754478;NR1H4:-0.529377277906;GZF1:-0.567282053128;OCT4_SOX2{dimer}:-0.571874564354;TFCP2:-0.575994240946;TP53:-0.580047829349;GTF2A1,2:-0.604444327384;ZNF148:-0.621775644493;HSF1,2:-0.631081226631;SPI1:-0.650456741844;RXRA_VDR{dimer}:-0.660387784649;RUNX1..3:-0.679476655985;EP300:-0.684286344887;MEF2{A,B,C,D}:-0.707217277871;BACH2:-0.715847642284;TGIF1:-0.734651362412;FOSL2:-0.745585904365;HAND1,2:-0.746635181305;ESR1:-0.748740412101;FOS_FOS{B,L1}_JUN{B,D}:-0.750186227972;ELF1,2,4:-0.757872329126;MYBL2:-0.766558457532;AR:-0.77429588698;NFKB1_REL_RELA:-0.789356758201;HOXA9_MEIS1:-0.800731259036;MAFB:-0.801693277092;EBF1:-0.801925520262;FOXP3:-0.815382141235;ZNF238:-0.849149320851;XBP1:-0.851179562676;DMAP1_NCOR{1,2}_SMARC:-0.894168618892;SRF:-0.903643270106;ALX4:-0.926938503661;POU3F1..4:-1.0175601788;IKZF1:-1.03183990274;CEBPA,B_DDIT3:-1.04869406452;HLF:-1.10706088775;NKX2-2,8:-1.12777896598;NR6A1:-1.15294411704;HMGA1,2:-1.17953170577;TEAD1:-1.18900145662;NKX3-2:-1.23618422357;NFIL3:-1.25353890389;PAX6:-1.33768851632;NANOG{mouse}:-1.38124047891;PPARG:-1.38482795816;ETS1,2:-1.40183204533;HIF1A:-1.46289007647;IRF7:-1.47124071993;IRF1,2:-1.47213334592;ATF6:-1.4972477308;SPZ1:-1.52802403775;TFAP4:-1.5476769454;NR3C1:-1.56229465657;GLI1..3:-1.56846961692;GCM1,2:-1.56925032108;SMAD1..7,9:-1.7775044852;NFE2L2:-1.8644028415;STAT2,4,6:-1.86606202685;HES1:-1.99180081341;NFATC1..3:-2.27422582727;TBX4,5:-2.27765278209;HMX1:-2.33513621681 | |top_motifs=ONECUT1,2:3.14935770402;VSX1,2:3.14580869437;LEF1_TCF7_TCF7L1,2:2.76139589715;PITX1..3:2.50106487963;IKZF2:2.42282378477;BPTF:2.30279448467;NANOG:2.15727535231;POU6F1:2.00476787876;SOX{8,9,10}:1.83407093294;TEF:1.78244042092;RREB1:1.78038289067;ZBTB16:1.77148711479;FOXP1:1.75504310739;YY1:1.74327808963;RFX2..5_RFXANK_RFXAP:1.73465904265;GATA4:1.68843110377;HOX{A6,A7,B6,B7}:1.67445397745;FOXM1:1.57393569697;TOPORS:1.57080561851;XCPE1{core}:1.56553941665;NFY{A,B,C}:1.54847330889;ZNF143:1.49689900131;EN1,2:1.46308064267;SNAI1..3:1.45970826161;SP1:1.45358440132;POU1F1:1.44300940079;MED-1{core}:1.42853189097;GFI1:1.41556608509;RFX1:1.40441444951;E2F1..5:1.39303344561;NRF1:1.36450481898;FOXD3:1.35993098313;ZEB1:1.33687774892;LMO2:1.33627123575;LHX3,4:1.32817596576;NKX6-1,2:1.28919868928;PAX8:1.26223967203;ARID5B:1.24528927762;ZFP161:1.21068669216;ATF4:1.19098052618;NKX2-3_NKX2-5:1.12154145678;ELK1,4_GABP{A,B1}:1.09650879339;PAX1,9:1.08649934613;SOX2:1.04699879911;PATZ1:1.01339795102;FOXL1:1.00075728813;CDC5L:0.919602578194;T:0.853064468532;TFAP2B:0.853006276794;CUX2:0.808085980655;RORA:0.751221450157;AIRE:0.744745031871;FOX{F1,F2,J1}:0.738763737935;ATF5_CREB3:0.722330657934;BREu{core}:0.709946164234;EVI1:0.709552144122;NKX3-1:0.708993058548;RBPJ:0.698966255162;ESRRA:0.66242798038;TFDP1:0.6555520903;ZBTB6:0.642150821944;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.635666973705;FOXO1,3,4:0.596249527017;MTE{core}:0.57950450796;HOX{A4,D4}:0.579469753594;STAT1,3:0.559980860116;HBP1_HMGB_SSRP1_UBTF:0.551765608255;CREB1:0.54606057077;MAZ:0.545438050675;ADNP_IRX_SIX_ZHX:0.544936464859;DBP:0.52798836292;REST:0.499745504424;ATF2:0.481739083566;TAL1_TCF{3,4,12}:0.472605692049;PBX1:0.456586925719;KLF4:0.448503853083;EGR1..3:0.445041943353;SOX17:0.415822875993;FOX{I1,J2}:0.413331714051;PRDM1:0.409647093256;MYB:0.378085472245;PRRX1,2:0.375873564212;POU5F1:0.367776761061;FOX{D1,D2}:0.365422398238;MZF1:0.334237309821;PAX5:0.333861243851;bHLH_family:0.316558638762;JUN:0.305555875232;PAX4:0.280826868094;NHLH1,2:0.266713694703;NFE2L1:0.244598033962;PAX3,7:0.225088062961;SOX5:0.219479571469;PDX1:0.19056464758;TLX2:0.149919686264;FOXA2:0.148753341219;HIC1:0.118488442312;UFEwm:0.116636796323;ZIC1..3:0.0977617094267;MYFfamily:0.0872202303822;MTF1:0.0807465775581;GTF2I:0.0609911799368;MYOD1:0.0605215343894;NR5A1,2:0.0603723426738;FOXN1:0.0307856648495;POU2F1..3:0.0176771026473;CDX1,2,4:-0.0105837785596;TLX1..3_NFIC{dimer}:-0.014314337329;ALX1:-0.0461875649459;SREBF1,2:-0.0809987502003;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.101321826055;ZNF423:-0.138135491616;FOXQ1:-0.191857368386;NKX2-1,4:-0.206268169761;NFIX:-0.26217465806;RXR{A,B,G}:-0.308213681522;HNF1A:-0.353889745653;GFI1B:-0.367265875681;SPIB:-0.368315055874;CRX:-0.382567907527;TFAP2{A,C}:-0.39776344525;STAT5{A,B}:-0.416810118886;HNF4A_NR2F1,2:-0.440712950744;AHR_ARNT_ARNT2:-0.455344343825;GATA6:-0.463250307086;NFE2:-0.499915620295;TBP:-0.504531753443;ZNF384:-0.517530276091;PAX2:-0.518386687333;HOX{A5,B5}:-0.525311754478;NR1H4:-0.529377277906;GZF1:-0.567282053128;OCT4_SOX2{dimer}:-0.571874564354;TFCP2:-0.575994240946;TP53:-0.580047829349;GTF2A1,2:-0.604444327384;ZNF148:-0.621775644493;HSF1,2:-0.631081226631;SPI1:-0.650456741844;RXRA_VDR{dimer}:-0.660387784649;RUNX1..3:-0.679476655985;EP300:-0.684286344887;MEF2{A,B,C,D}:-0.707217277871;BACH2:-0.715847642284;TGIF1:-0.734651362412;FOSL2:-0.745585904365;HAND1,2:-0.746635181305;ESR1:-0.748740412101;FOS_FOS{B,L1}_JUN{B,D}:-0.750186227972;ELF1,2,4:-0.757872329126;MYBL2:-0.766558457532;AR:-0.77429588698;NFKB1_REL_RELA:-0.789356758201;HOXA9_MEIS1:-0.800731259036;MAFB:-0.801693277092;EBF1:-0.801925520262;FOXP3:-0.815382141235;ZNF238:-0.849149320851;XBP1:-0.851179562676;DMAP1_NCOR{1,2}_SMARC:-0.894168618892;SRF:-0.903643270106;ALX4:-0.926938503661;POU3F1..4:-1.0175601788;IKZF1:-1.03183990274;CEBPA,B_DDIT3:-1.04869406452;HLF:-1.10706088775;NKX2-2,8:-1.12777896598;NR6A1:-1.15294411704;HMGA1,2:-1.17953170577;TEAD1:-1.18900145662;NKX3-2:-1.23618422357;NFIL3:-1.25353890389;PAX6:-1.33768851632;NANOG{mouse}:-1.38124047891;PPARG:-1.38482795816;ETS1,2:-1.40183204533;HIF1A:-1.46289007647;IRF7:-1.47124071993;IRF1,2:-1.47213334592;ATF6:-1.4972477308;SPZ1:-1.52802403775;TFAP4:-1.5476769454;NR3C1:-1.56229465657;GLI1..3:-1.56846961692;GCM1,2:-1.56925032108;SMAD1..7,9:-1.7775044852;NFE2L2:-1.8644028415;STAT2,4,6:-1.86606202685;HES1:-1.99180081341;NFATC1..3:-2.27422582727;TBX4,5:-2.27765278209;HMX1:-2.33513621681 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10610-108F7;search_select_hide=table117:FF:10610-108F7 | |||
}} | }} | ||
Latest revision as of 14:31, 3 June 2020
| Name: | small cell gastrointestinal carcinoma cell line:ECC10 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11736 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11736
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11736
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.162 |
| 10 | 10 | 0.151 |
| 100 | 100 | 0.85 |
| 101 | 101 | 0.66 |
| 102 | 102 | 0.41 |
| 103 | 103 | 0.0374 |
| 104 | 104 | 0.31 |
| 105 | 105 | 0.116 |
| 106 | 106 | 0.0058 |
| 107 | 107 | 0.0419 |
| 108 | 108 | 0.999 |
| 109 | 109 | 0.221 |
| 11 | 11 | 0.133 |
| 110 | 110 | 0.296 |
| 111 | 111 | 0.333 |
| 112 | 112 | 0.159 |
| 113 | 113 | 0.157 |
| 114 | 114 | 0.0341 |
| 115 | 115 | 0.5 |
| 116 | 116 | 0.263 |
| 117 | 117 | 0.432 |
| 118 | 118 | 0.764 |
| 119 | 119 | 0.302 |
| 12 | 12 | 0.66 |
| 120 | 120 | 0.556 |
| 121 | 121 | 0.882 |
| 122 | 122 | 0.822 |
| 123 | 123 | 0.612 |
| 124 | 124 | 0.255 |
| 125 | 125 | 0.15 |
| 126 | 126 | 0.564 |
| 127 | 127 | 0.563 |
| 128 | 128 | 0.0598 |
| 129 | 129 | 0.282 |
| 13 | 13 | 0.351 |
| 130 | 130 | 0.641 |
| 131 | 131 | 0.518 |
| 132 | 132 | 0.646 |
| 133 | 133 | 0.478 |
| 134 | 134 | 0.621 |
| 135 | 135 | 0.00127 |
| 136 | 136 | 0.357 |
| 137 | 137 | 0.174 |
| 138 | 138 | 0.793 |
| 139 | 139 | 0.215 |
| 14 | 14 | 0.895 |
| 140 | 140 | 0.681 |
| 141 | 141 | 0.898 |
| 142 | 142 | 0.996 |
| 143 | 143 | 0.0166 |
| 144 | 144 | 0.566 |
| 145 | 145 | 0.303 |
| 146 | 146 | 0.349 |
| 147 | 147 | 0.506 |
| 148 | 148 | 0.052 |
| 149 | 149 | 0.121 |
| 15 | 15 | 0.0804 |
| 150 | 150 | 0.567 |
| 151 | 151 | 0.463 |
| 152 | 152 | 0.0581 |
| 153 | 153 | 0.341 |
| 154 | 154 | 0.552 |
| 155 | 155 | 0.624 |
| 156 | 156 | 0.754 |
| 157 | 157 | 0.505 |
| 158 | 158 | 0.317 |
| 159 | 159 | 0.0138 |
| 16 | 16 | 0.153 |
| 160 | 160 | 0.0293 |
| 161 | 161 | 0.527 |
| 162 | 162 | 0.815 |
| 163 | 163 | 0.468 |
| 164 | 164 | 0.273 |
| 165 | 165 | 0.183 |
| 166 | 166 | 0.716 |
| 167 | 167 | 0.505 |
| 168 | 168 | 0.0601 |
| 169 | 169 | 0.00589 |
| 17 | 17 | 0.176 |
| 18 | 18 | 0.154 |
| 19 | 19 | 0.093 |
| 2 | 2 | 0.425 |
| 20 | 20 | 0.606 |
| 21 | 21 | 0.298 |
| 22 | 22 | 0.166 |
| 23 | 23 | 0.0125 |
| 24 | 24 | 0.122 |
| 25 | 25 | 0.466 |
| 26 | 26 | 0.131 |
| 27 | 27 | 0.142 |
| 28 | 28 | 0.758 |
| 29 | 29 | 0.117 |
| 3 | 3 | 0.111 |
| 30 | 30 | 0.439 |
| 31 | 31 | 0.575 |
| 32 | 32 | 0.00612 |
| 33 | 33 | 0.256 |
| 34 | 34 | 0.255 |
| 35 | 35 | 0.305 |
| 36 | 36 | 0.56 |
| 37 | 37 | 0.126 |
| 38 | 38 | 0.477 |
| 39 | 39 | 0.171 |
| 4 | 4 | 0.735 |
| 40 | 40 | 0.65 |
| 41 | 41 | 0.141 |
| 42 | 42 | 0.253 |
| 43 | 43 | 0.0902 |
| 44 | 44 | 0.636 |
| 45 | 45 | 0.287 |
| 46 | 46 | 0.191 |
| 47 | 47 | 0.722 |
| 48 | 48 | 0.354 |
| 49 | 49 | 0.372 |
| 5 | 5 | 0.136 |
| 50 | 50 | 0.752 |
| 51 | 51 | 0.307 |
| 52 | 52 | 0.133 |
| 53 | 53 | 0.599 |
| 54 | 54 | 0.3 |
| 55 | 55 | 0.227 |
| 56 | 56 | 0.544 |
| 57 | 57 | 0.559 |
| 58 | 58 | 0.197 |
| 59 | 59 | 0.0149 |
| 6 | 6 | 0.979 |
| 60 | 60 | 0.0236 |
| 61 | 61 | 0.39 |
| 62 | 62 | 0.0417 |
| 63 | 63 | 0.235 |
| 64 | 64 | 0.301 |
| 65 | 65 | 0.172 |
| 66 | 66 | 0.284 |
| 67 | 67 | 0.803 |
| 68 | 68 | 0.421 |
| 69 | 69 | 0.432 |
| 7 | 7 | 0.371 |
| 70 | 70 | 0.11 |
| 71 | 71 | 0.112 |
| 72 | 72 | 0.0971 |
| 73 | 73 | 0.132 |
| 74 | 74 | 0.231 |
| 75 | 75 | 0.397 |
| 76 | 76 | 0.924 |
| 77 | 77 | 0.083 |
| 78 | 78 | 0.309 |
| 79 | 79 | 0.415 |
| 8 | 8 | 0.133 |
| 80 | 80 | 0.105 |
| 81 | 81 | 0.209 |
| 82 | 82 | 0.033 |
| 83 | 83 | 0.0327 |
| 84 | 84 | 0.294 |
| 85 | 85 | 0.00551 |
| 86 | 86 | 0.311 |
| 87 | 87 | 0.193 |
| 88 | 88 | 0.676 |
| 89 | 89 | 0.103 |
| 9 | 9 | 0.122 |
| 90 | 90 | 0.374 |
| 91 | 91 | 0.228 |
| 92 | 92 | 0.043 |
| 93 | 93 | 0.912 |
| 94 | 94 | 0.101 |
| 95 | 95 | 0.375 |
| 96 | 96 | 0.331 |
| 97 | 97 | 0.66 |
| 98 | 98 | 0.454 |
| 99 | 99 | 0.506 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11736
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100297 carcinoma cell line sample
FF:0101533 gastrointestinal cancer cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
3119 (gastrointestinal system cancer)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0101533 (gastrointestinal cancer cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
