FF:10624-108H3: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00004866 | |||
|accession_numbers=CAGE;DRX007901;DRR008773;DRZ000198;DRZ001583;DRZ011548;DRZ012933 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0000066,CL:0002371,CL:0002078,CL:0000163,CL:0000174,CL:0002174,CL:0000255,CL:0000501 | ||
| | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:193 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0102285 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0102285 | |fonse_cell_line=FF:0102285 | ||
|fonse_cell_line_closure=FF:0102285 | |fonse_cell_line_closure=FF:0102285 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/granulosa%2520cell%2520tumor%2520cell%2520line%253aKGN.CNhs11740.10624-108H3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/granulosa%2520cell%2520tumor%2520cell%2520line%253aKGN.CNhs11740.10624-108H3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/granulosa%2520cell%2520tumor%2520cell%2520line%253aKGN.CNhs11740.10624-108H3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/granulosa%2520cell%2520tumor%2520cell%2520line%253aKGN.CNhs11740.10624-108H3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/granulosa%2520cell%2520tumor%2520cell%2520line%253aKGN.CNhs11740.10624-108H3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10624-108H3 | |id=FF:10624-108H3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0102285 | ||
|is_obsolete= | |||
|library_id=CNhs11740 | |||
|library_id_phase_based=2:CNhs11740 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10624 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10624 | |||
|name=granulosa cell tumor cell line:KGN | |name=granulosa cell tumor cell line:KGN | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11740,LSID819,release009,COMPLETED | |profile_hcage=CNhs11740,LSID819,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.19938398087635,0,0.289483473638728,0.537396628078059,0,0,0,0,0,0,0,0,0,0,0,0.26940339545949,0,-0.153323010348428,0,0,0,0,0,0.261744114694678,0,0,0.136446805680628,0,0,0,0,0,0,0,0,0,0,0.434419073048791,0,0.282501764987403,0.155264795610224,0,0,0,0,0,0,0,0.0534173766922775,0,0,0,0,0,0.00509474497697104,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0048977122755845,0.170085649122678,0,0,0,0.0968179687983986,0.0011366928389885,0.077632397805112,0.553712265428686,0,0.434419073048791,0.171368044221784,0.332173592291297,0,0,0,0,0,0,0.498148829241803,0,0,0,0,0,0,0,0,0,0,-0.018741196117349,0.26940339545949,0,0,0.141701613813246,0.334216423941776,0,0,0.0240007450640584,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.171368044221784,0,0.434419073048791,0,0,0,0,0,0,0.553712265428686,0,0,0.355787637358563,0,-0.0396671457032178,-0.143515142523472,0,0,-0.100572274483557,0,0,0,0,0.155264795610224,0,0.434419073048791,0.26940339545949,0,0.141283528506925,0,-0.0504125515893149,0,0,0,0,0.0264562820990135,0.0542297800643287,0,0.0055929443318582,0.291357749885368,0,0,0,0,-0.192608271529213,0,0.0343853118164832,0.276981842639319,0.138090422859929,0.149911345703275,-0.04680465889238,0,0,0,0.08537182222946,0.519713316483385,0,0,-0.121779851751874,0.725430236978033,0,0,0.709452335844734,0,0.135440595682066,0.000166929224336587,0,0,0,0,0,0,0,0,0,0,0.155264795610224,0,0,0.0201389309836753,-0.0575852012194789,0,0,0.155264795610224,0,0.341822272357018,0,0,0.384672864819628,0.0900700344778751,-0.00250419198700802,-0.200111556414048,0,-0.147124931399689,0.00091909536380891,-0.217051565023679,0.103985648480824,-0.147401849371139,-0.0347169239396235,0,0.197314722939466,0.0856784928446929,0.0989989266412488,0.0373382506253854,0.0323839954742447,-0.29010692210272,0.124839096251915,0,0.155264795610224,0.0234935238846641,0.106807334721275,0,0.0686515914403747,0.15708467180164,-0.0353395926552363,0.194650371621273,-0.284771364720058,0.0839335817004391,-0.0248269341114282,0.275020174754443,0.229904211349387,0.0515994178914158,0.280791973204813,0.0137139442686285,0,0,0.00379001065288637,0.23340527169553,0.173556050458417,0.0651778897780935,0.203363202435001,0.291357749885368,0.077632397805112,0.0223031735539826,0.0685081751555658,0.155264795610224,0.155264795610224,0.239907184643089,0,0,0,0,0,-0.153696149170743,-0.105073069981376,-0.232855561555545,0,0.051619188978226,0.0129753771192984,-0.117435074871219,0,-0.0252602578836252,-0.0469059660005817,-0.0593368866493216,-0.137369008986012,0,-0.0883712161289102,-0.0093212047021315,0.104412699120487,-0.152991409932247,0.0968179687983986,0.210829652408653,-0.273961578701535,-0.00971221742289652,-0.0648562405574741,0,-0.0881268324752877,0,0.170085649122678,0.26180345456286,0.0180684782582754,0.0092148425143205,0,0.147365942190866,0,-0.186944348977672,0,-0.122007109890676,0.0625327611708877,-0.439289374580686,-0.0728333680726334,0,0.156497920641872,1.30347676466575,0,-9.7068795269717e-05,0,0,0.0048977122755845,0.264462251063998,-0.211650427864589,-0.0613570588740827,0,0.0286042571248442,0,0,0.352199658671917,0.124225973198347,0.155264795610224,0.429107331331757,0.310189666361884,0.119867583037458,0.0392937221752898,0,0,-0.376296942533235,0,0,-0.00296155117390251,0.100570974856646,0.276536006703587,0.0160770539727343,0.212334095534857,0.405058398663587,0,0,-0.177527765965176,0,0.144456103117341,0,0,-0.115179598869079,0,0,0,0,0.0250726177052461,0,0,0,0,0,0,0,0.135458575996548,0.198878935212238,0,0.0709328803477429,0,0,0,0,0,-0.110803081130275,0.117551365834056,0.26940339545949,0.57534161564771,0.114529854594022,0.0322473799338036,0.155264795610224,0,0,0,0.0536799929060153,0.0661668333647662,0,0.0234020891125921,0,0,0,0,0.0691238058210125,0,0,0,0.077632397805112,0.211672938405826,-0.0868988384051412,0,0,0,0.664347184582594,0,0,0,0,0.0410531877336759,0,0,0.0666728773589957,0.00364979314583491,0.00736684453813718,0.187821515912649,0,0.0861631880439409,0.100052674142324,0.311843819661645,0,0,-0.261347131789888,0,0,-0.0946427354488634,0,0,-0.0209247759461169,0,0,0,0,0,0,0.14538749856298,0.077632397805112,0,0,0,0,0,0,0,0,0,0.155264795610224,-0.0525055900492535,-0.0922240566585104,0.0985487273332102,0,0,0,0,0,0,0.131158772531321,-0.0419437742458005,0,0,0,0,0,0,0,0,0.0267228895785606,0,0,0,0,0,-0.0969923612426051,0,0,0,0,0.715091245193382,0,0,0.325604380450614,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146084309424042,0.289483473638728,0,0,0,0,0,0,0,0.0848687127566455,0,0.359702010962736,0,0,-0.113884373708977,0,0,0,0.164607010670334,0,0.19938398087635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47773682640859,0,0,0,0,0,0.068854903689022,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26940339545949,0,0,0,0,0,0.077632397805112,0.0590388243202206,0,0,0,0,0,0,0,0.261744114694678,0,0,-0.0920328098005262,0,0,0,0,0.0915670663257719,0,0.0265758625544035,0.447489495064022,0.0787942222425181,0,0,0,0.240456361847052,0,0,0,0,0.0884874081913225,0,0,0,0,0,0,0,0,0.155264795610224,0,0,0,0,0,0.155264795610224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0.134701697729745,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155264795610224,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.473693797160048,0,0,0,-0.0578214340468199,0,0,0,0,0,0,0.155264795610224,0,0.26940339545949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155264795610224,0,0,0,0.241770519328019,0,0,0,0,0,0,0,0,0.434419073048791,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.268180372998788,0,0,0,0,0.221766284798571,0,0,0,0,0,0,0.434419073048791,-0.087428497801853,0,0,0.155264795610224,0,0,0,0,0,0,0,0,0,0,0.349355904355623,0,0,0.353518765809936,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| |||
|rna_box=108 | |rna_box=108 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=29.50331 | |rna_weight_ug=29.50331 | ||
|sample_age=69 | |sample_age=69 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1154 | |sample_cell_catalog=RCB1154 | ||
|sample_cell_line=KGN | |sample_cell_line=KGN | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.65464943822384e-234!GO:0043226;organelle;4.29318738030277e-188!GO:0043229;intracellular organelle;2.01024683077489e-187!GO:0005737;cytoplasm;2.35832865440163e-185!GO:0043231;intracellular membrane-bound organelle;4.7013081495277e-180!GO:0043227;membrane-bound organelle;6.57708401757441e-180!GO:0044422;organelle part;4.4651147854411e-131!GO:0044446;intracellular organelle part;1.48336448818247e-129!GO:0044444;cytoplasmic part;5.17093806631921e-123!GO:0032991;macromolecular complex;3.68622542383108e-91!GO:0005515;protein binding;2.35163057628679e-87!GO:0044237;cellular metabolic process;5.63024115209826e-77!GO:0044238;primary metabolic process;8.10838139217707e-77!GO:0043170;macromolecule metabolic process;2.42803925006667e-75!GO:0005634;nucleus;9.60522760993092e-74!GO:0030529;ribonucleoprotein complex;7.71912829652246e-71!GO:0044428;nuclear part;8.69026310972431e-66!GO:0043233;organelle lumen;6.71634056189069e-63!GO:0031974;membrane-enclosed lumen;6.71634056189069e-63!GO:0003723;RNA binding;9.37485848132217e-59!GO:0016043;cellular component organization and biogenesis;2.58816048358494e-53!GO:0005739;mitochondrion;5.06032130054704e-53!GO:0019538;protein metabolic process;2.96531964276449e-48!GO:0043234;protein complex;2.96531964276449e-48!GO:0031090;organelle membrane;3.20902003103999e-46!GO:0033036;macromolecule localization;2.78840706093542e-44!GO:0043283;biopolymer metabolic process;3.31160699133738e-44!GO:0044260;cellular macromolecule metabolic process;5.78630811805915e-43!GO:0015031;protein transport;8.4121451417255e-43!GO:0044267;cellular protein metabolic process;3.11635497506365e-42!GO:0005840;ribosome;3.70237543162765e-42!GO:0008104;protein localization;1.21888380206929e-40!GO:0045184;establishment of protein localization;4.01067317460747e-40!GO:0006412;translation;4.05838497077185e-40!GO:0031981;nuclear lumen;1.80977659300706e-39!GO:0006396;RNA processing;1.15340242257381e-38!GO:0003735;structural constituent of ribosome;7.2455633297682e-37!GO:0031967;organelle envelope;1.30539318488987e-36!GO:0031975;envelope;3.05921552513604e-36!GO:0046907;intracellular transport;4.04100463227645e-36!GO:0044429;mitochondrial part;8.24770142976282e-36!GO:0043228;non-membrane-bound organelle;8.90181874390199e-36!GO:0043232;intracellular non-membrane-bound organelle;8.90181874390199e-36!GO:0005829;cytosol;1.74398224267296e-34!GO:0010467;gene expression;2.67843418876213e-34!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.66550734130857e-33!GO:0006996;organelle organization and biogenesis;3.06886337491782e-33!GO:0016071;mRNA metabolic process;6.67667312472276e-33!GO:0033279;ribosomal subunit;9.14223291548864e-33!GO:0008380;RNA splicing;1.95851911525082e-31!GO:0009058;biosynthetic process;1.78085612478848e-30!GO:0009059;macromolecule biosynthetic process;2.66189183172229e-30!GO:0044249;cellular biosynthetic process;2.46740298029854e-29!GO:0065003;macromolecular complex assembly;5.18893104587137e-29!GO:0006886;intracellular protein transport;5.98133624161124e-29!GO:0006397;mRNA processing;5.21402668134461e-28!GO:0007049;cell cycle;6.92619063600453e-27!GO:0000166;nucleotide binding;1.29646835885268e-26!GO:0022607;cellular component assembly;1.45722667312779e-26!GO:0006259;DNA metabolic process;4.73422081835722e-26!GO:0005654;nucleoplasm;1.54090490514117e-25!GO:0051649;establishment of cellular localization;9.14573023805154e-25!GO:0051641;cellular localization;9.60928653926311e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.55104347479763e-24!GO:0005740;mitochondrial envelope;6.80128894781857e-24!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.08534777250251e-22!GO:0031966;mitochondrial membrane;1.65575468510807e-22!GO:0016462;pyrophosphatase activity;2.06642392837699e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.52339776350055e-22!GO:0017111;nucleoside-triphosphatase activity;3.21479988645947e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;3.84165693438923e-22!GO:0019866;organelle inner membrane;4.57620820147451e-22!GO:0005681;spliceosome;1.60426996594527e-21!GO:0012505;endomembrane system;7.16585696817813e-21!GO:0044451;nucleoplasm part;1.23205001649568e-20!GO:0044445;cytosolic part;4.07496391061107e-20!GO:0032553;ribonucleotide binding;4.98692936244849e-20!GO:0032555;purine ribonucleotide binding;4.98692936244849e-20!GO:0005743;mitochondrial inner membrane;6.04267925648794e-20!GO:0022402;cell cycle process;7.54351081263048e-20!GO:0006119;oxidative phosphorylation;1.27648344519732e-19!GO:0017076;purine nucleotide binding;2.11893710826527e-19!GO:0006457;protein folding;2.89648685943355e-19!GO:0006512;ubiquitin cycle;3.44882763689827e-18!GO:0005783;endoplasmic reticulum;3.51470960496073e-18!GO:0008134;transcription factor binding;6.54455773022191e-18!GO:0016874;ligase activity;7.11041056395705e-18!GO:0044455;mitochondrial membrane part;1.02945037642876e-17!GO:0015934;large ribosomal subunit;1.21475958004321e-17!GO:0003676;nucleic acid binding;1.47403758280151e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;4.11755994907953e-17!GO:0019941;modification-dependent protein catabolic process;8.11096581762442e-17!GO:0043632;modification-dependent macromolecule catabolic process;8.11096581762442e-17!GO:0000278;mitotic cell cycle;1.08023302119151e-16!GO:0044257;cellular protein catabolic process;1.2214704298887e-16!GO:0005794;Golgi apparatus;1.29496149885638e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.32083673358725e-16!GO:0044265;cellular macromolecule catabolic process;1.44762422153609e-16!GO:0005524;ATP binding;1.60985516213423e-16!GO:0015935;small ribosomal subunit;3.4385414046571e-16!GO:0032559;adenyl ribonucleotide binding;3.64885187535381e-16!GO:0043285;biopolymer catabolic process;4.40070118708068e-16!GO:0048770;pigment granule;1.07895920727183e-15!GO:0042470;melanosome;1.07895920727183e-15!GO:0043412;biopolymer modification;1.73494917615776e-15!GO:0030554;adenyl nucleotide binding;2.07272496968088e-15!GO:0000502;proteasome complex (sensu Eukaryota);3.12694016240129e-15!GO:0048193;Golgi vesicle transport;3.66623180863603e-15!GO:0016070;RNA metabolic process;4.53950947927654e-15!GO:0022618;protein-RNA complex assembly;5.16422107374977e-15!GO:0006605;protein targeting;7.31549661993458e-15!GO:0005730;nucleolus;1.46836058896303e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.78255866497261e-14!GO:0009057;macromolecule catabolic process;2.36252676238744e-14!GO:0031980;mitochondrial lumen;2.50782814947931e-14!GO:0005759;mitochondrial matrix;2.50782814947931e-14!GO:0044432;endoplasmic reticulum part;2.79043630313305e-14!GO:0006974;response to DNA damage stimulus;3.18747733771814e-14!GO:0005746;mitochondrial respiratory chain;4.31390940278813e-14!GO:0006464;protein modification process;5.21245160477975e-14!GO:0030163;protein catabolic process;6.71578764024324e-14!GO:0016192;vesicle-mediated transport;7.82254407841868e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.14768450237172e-13!GO:0003954;NADH dehydrogenase activity;1.14768450237172e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.14768450237172e-13!GO:0005635;nuclear envelope;1.77511566644859e-13!GO:0051082;unfolded protein binding;3.07563416116698e-13!GO:0051301;cell division;6.19341375010409e-13!GO:0044248;cellular catabolic process;7.46813698130142e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.05521508557039e-12!GO:0000087;M phase of mitotic cell cycle;1.29478209032546e-12!GO:0043687;post-translational protein modification;1.30286384077088e-12!GO:0007067;mitosis;1.67958533125955e-12!GO:0048523;negative regulation of cellular process;1.70848157835117e-12!GO:0022403;cell cycle phase;1.72391888244898e-12!GO:0008135;translation factor activity, nucleic acid binding;2.49187971719701e-12!GO:0003712;transcription cofactor activity;2.53059681513781e-12!GO:0006913;nucleocytoplasmic transport;2.77109718201214e-12!GO:0031965;nuclear membrane;2.89788495780572e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.06945168216223e-12!GO:0051186;cofactor metabolic process;6.03093996798355e-12!GO:0051169;nuclear transport;7.10680382302623e-12!GO:0012501;programmed cell death;9.43250153695663e-12!GO:0016887;ATPase activity;1.00391792955711e-11!GO:0006281;DNA repair;1.10160696869353e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.17860319625719e-11!GO:0045271;respiratory chain complex I;1.17860319625719e-11!GO:0005747;mitochondrial respiratory chain complex I;1.17860319625719e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.25360082569183e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.40449580318358e-11!GO:0042773;ATP synthesis coupled electron transport;1.40449580318358e-11!GO:0005694;chromosome;1.44506015498143e-11!GO:0051276;chromosome organization and biogenesis;1.54857651295523e-11!GO:0006915;apoptosis;1.80281214603228e-11!GO:0044453;nuclear membrane part;2.01726369131685e-11!GO:0042623;ATPase activity, coupled;2.98628864234524e-11!GO:0051726;regulation of cell cycle;3.36443787030703e-11!GO:0005761;mitochondrial ribosome;3.48866737515035e-11!GO:0000313;organellar ribosome;3.48866737515035e-11!GO:0000074;regulation of progression through cell cycle;3.67892356422474e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.84201208473335e-11!GO:0008639;small protein conjugating enzyme activity;4.91365282277082e-11!GO:0008219;cell death;6.14647783526668e-11!GO:0016265;death;6.14647783526668e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;7.25014221829454e-11!GO:0000375;RNA splicing, via transesterification reactions;7.25014221829454e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.25014221829454e-11!GO:0004842;ubiquitin-protein ligase activity;8.26682555224254e-11!GO:0006260;DNA replication;9.084825500328e-11!GO:0048519;negative regulation of biological process;1.33037970233146e-10!GO:0016604;nuclear body;1.57211958222182e-10!GO:0044427;chromosomal part;1.62594762567012e-10!GO:0005793;ER-Golgi intermediate compartment;1.6945732146762e-10!GO:0006366;transcription from RNA polymerase II promoter;1.88642681295949e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.58309097215897e-10!GO:0019787;small conjugating protein ligase activity;5.23531215593067e-10!GO:0050794;regulation of cellular process;6.78568495183456e-10!GO:0015630;microtubule cytoskeleton;7.00014965541655e-10!GO:0003743;translation initiation factor activity;9.56341655469497e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;1.20334550642216e-09!GO:0005789;endoplasmic reticulum membrane;1.61746896589747e-09!GO:0000279;M phase;1.69796949289263e-09!GO:0009719;response to endogenous stimulus;1.90376339138316e-09!GO:0006413;translational initiation;2.44130476735461e-09!GO:0008565;protein transporter activity;2.87049618835124e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.02400770687326e-09!GO:0004386;helicase activity;3.04720251983305e-09!GO:0005768;endosome;3.65963764622764e-09!GO:0009259;ribonucleotide metabolic process;3.79933855657614e-09!GO:0017038;protein import;3.87975856553833e-09!GO:0006446;regulation of translational initiation;4.38487944811501e-09!GO:0006461;protein complex assembly;4.45610624047539e-09!GO:0006323;DNA packaging;4.85408887710647e-09!GO:0003924;GTPase activity;5.68794227164076e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.01193560243841e-09!GO:0006732;coenzyme metabolic process;7.92012353736501e-09!GO:0030120;vesicle coat;9.77514505599096e-09!GO:0030662;coated vesicle membrane;9.77514505599096e-09!GO:0005643;nuclear pore;9.88986484023744e-09!GO:0006163;purine nucleotide metabolic process;1.0043298593119e-08!GO:0016607;nuclear speck;1.05212971226427e-08!GO:0016881;acid-amino acid ligase activity;1.18272274012095e-08!GO:0009150;purine ribonucleotide metabolic process;1.37552130743245e-08!GO:0003714;transcription corepressor activity;1.66755409570025e-08!GO:0042254;ribosome biogenesis and assembly;1.96523646538419e-08!GO:0009055;electron carrier activity;3.5299394451461e-08!GO:0009260;ribonucleotide biosynthetic process;3.65755117526636e-08!GO:0006164;purine nucleotide biosynthetic process;3.68270351987501e-08!GO:0006888;ER to Golgi vesicle-mediated transport;3.69206646035834e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.80114646946844e-08!GO:0009141;nucleoside triphosphate metabolic process;3.83126963007395e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.03498489532783e-08!GO:0009152;purine ribonucleotide biosynthetic process;4.80606098803605e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.39259373812415e-08!GO:0009144;purine nucleoside triphosphate metabolic process;5.39259373812415e-08!GO:0048475;coated membrane;5.39259373812415e-08!GO:0030117;membrane coat;5.39259373812415e-08!GO:0008026;ATP-dependent helicase activity;7.44904157550252e-08!GO:0045786;negative regulation of progression through cell cycle;1.02297361633805e-07!GO:0065004;protein-DNA complex assembly;1.03880158003731e-07!GO:0043067;regulation of programmed cell death;1.04128012208966e-07!GO:0042981;regulation of apoptosis;1.40701321893696e-07!GO:0046930;pore complex;1.54813345033718e-07!GO:0006403;RNA localization;1.56237391651537e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.58144152250322e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.58144152250322e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.58144152250322e-07!GO:0015986;ATP synthesis coupled proton transport;1.75961018801688e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.75961018801688e-07!GO:0008092;cytoskeletal protein binding;1.80288546787904e-07!GO:0050657;nucleic acid transport;2.07039316418191e-07!GO:0051236;establishment of RNA localization;2.07039316418191e-07!GO:0050658;RNA transport;2.07039316418191e-07!GO:0051170;nuclear import;2.35476764055677e-07!GO:0019829;cation-transporting ATPase activity;2.40053439751068e-07!GO:0044431;Golgi apparatus part;2.63800658094331e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.7058963559952e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.7058963559952e-07!GO:0046034;ATP metabolic process;2.77199083363926e-07!GO:0005788;endoplasmic reticulum lumen;2.81762374761844e-07!GO:0006399;tRNA metabolic process;3.06699143498579e-07!GO:0006606;protein import into nucleus;3.18209821946407e-07!GO:0043038;amino acid activation;3.50523641659201e-07!GO:0006418;tRNA aminoacylation for protein translation;3.50523641659201e-07!GO:0043039;tRNA aminoacylation;3.50523641659201e-07!GO:0006793;phosphorus metabolic process;3.57618620997119e-07!GO:0006796;phosphate metabolic process;3.57618620997119e-07!GO:0065002;intracellular protein transport across a membrane;3.7931533785645e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.7931533785645e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.7931533785645e-07!GO:0006333;chromatin assembly or disassembly;4.42823343292807e-07!GO:0009060;aerobic respiration;4.42823343292807e-07!GO:0032446;protein modification by small protein conjugation;4.70356389569858e-07!GO:0050789;regulation of biological process;4.76171434777235e-07!GO:0005667;transcription factor complex;4.83180256098164e-07!GO:0009056;catabolic process;5.48466381524895e-07!GO:0016564;transcription repressor activity;5.84818424789303e-07!GO:0016567;protein ubiquitination;5.97797075971932e-07!GO:0005813;centrosome;7.43401557637585e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;9.79464120808836e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.00349555043699e-06!GO:0043069;negative regulation of programmed cell death;1.2111646245321e-06!GO:0031324;negative regulation of cellular metabolic process;1.24198405514147e-06!GO:0031252;leading edge;1.28016851822247e-06!GO:0005815;microtubule organizing center;1.2814745843618e-06!GO:0016787;hydrolase activity;1.3446384435187e-06!GO:0000151;ubiquitin ligase complex;1.38263451764883e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.45418715625288e-06!GO:0000785;chromatin;1.63517691768979e-06!GO:0006754;ATP biosynthetic process;1.78547117577374e-06!GO:0006753;nucleoside phosphate metabolic process;1.78547117577374e-06!GO:0005798;Golgi-associated vesicle;1.83193651498722e-06!GO:0016568;chromatin modification;1.89352792175643e-06!GO:0031988;membrane-bound vesicle;2.05133431061839e-06!GO:0003697;single-stranded DNA binding;2.07728346475631e-06!GO:0007010;cytoskeleton organization and biogenesis;2.09520387028559e-06!GO:0043066;negative regulation of apoptosis;2.35714851377658e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.37925028313763e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.40137245688007e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.53703740294803e-06!GO:0005819;spindle;2.53802372399987e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.78138265098116e-06!GO:0043566;structure-specific DNA binding;3.12231197744935e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.17746807524036e-06!GO:0005525;GTP binding;3.42688384494523e-06!GO:0051246;regulation of protein metabolic process;3.5339895214281e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.71278629231654e-06!GO:0016310;phosphorylation;4.13628316421258e-06!GO:0007005;mitochondrion organization and biogenesis;4.62813459406089e-06!GO:0005773;vacuole;4.84193292587376e-06!GO:0005770;late endosome;5.20222908883957e-06!GO:0004298;threonine endopeptidase activity;5.23305738676061e-06!GO:0051188;cofactor biosynthetic process;6.13729004594613e-06!GO:0045333;cellular respiration;6.2980772488282e-06!GO:0031982;vesicle;6.78971032374863e-06!GO:0044440;endosomal part;7.04828814440257e-06!GO:0010008;endosome membrane;7.04828814440257e-06!GO:0043623;cellular protein complex assembly;7.50520243606946e-06!GO:0051028;mRNA transport;8.27748999028309e-06!GO:0016563;transcription activator activity;8.84519473655213e-06!GO:0051789;response to protein stimulus;9.01990123919654e-06!GO:0006986;response to unfolded protein;9.01990123919654e-06!GO:0000245;spliceosome assembly;9.44732527803701e-06!GO:0031410;cytoplasmic vesicle;1.14593464832066e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.23675786968686e-05!GO:0009117;nucleotide metabolic process;1.26320554652698e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.29247785477241e-05!GO:0045259;proton-transporting ATP synthase complex;1.30852401539529e-05!GO:0006099;tricarboxylic acid cycle;1.46477014845883e-05!GO:0046356;acetyl-CoA catabolic process;1.46477014845883e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.5272652597194e-05!GO:0006364;rRNA processing;1.54836776464145e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.69869802040171e-05!GO:0006916;anti-apoptosis;1.87207111531318e-05!GO:0009892;negative regulation of metabolic process;2.11502055804751e-05!GO:0006613;cotranslational protein targeting to membrane;2.19986866768073e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.21090504886634e-05!GO:0003724;RNA helicase activity;2.76824011505925e-05!GO:0005769;early endosome;2.89459358765572e-05!GO:0000139;Golgi membrane;2.99338978383835e-05!GO:0016072;rRNA metabolic process;3.02524516307425e-05!GO:0008361;regulation of cell size;3.1690501671432e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.1690501671432e-05!GO:0006334;nucleosome assembly;3.53702643262741e-05!GO:0000323;lytic vacuole;3.60726198573043e-05!GO:0005764;lysosome;3.60726198573043e-05!GO:0005905;coated pit;4.00854405905227e-05!GO:0003713;transcription coactivator activity;4.12145094608228e-05!GO:0016049;cell growth;4.4867619976961e-05!GO:0009109;coenzyme catabolic process;4.54489060814074e-05!GO:0006261;DNA-dependent DNA replication;4.54489060814074e-05!GO:0051187;cofactor catabolic process;4.5609856856883e-05!GO:0051325;interphase;4.9269436505812e-05!GO:0032561;guanyl ribonucleotide binding;5.48130146980354e-05!GO:0019001;guanyl nucleotide binding;5.48130146980354e-05!GO:0016481;negative regulation of transcription;5.51743532793709e-05!GO:0000775;chromosome, pericentric region;5.5743718432991e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.70424690501957e-05!GO:0006752;group transfer coenzyme metabolic process;6.09468208665271e-05!GO:0031968;organelle outer membrane;6.46650514352565e-05!GO:0016491;oxidoreductase activity;6.81975379673978e-05!GO:0031497;chromatin assembly;6.87688351807691e-05!GO:0006084;acetyl-CoA metabolic process;6.87688351807691e-05!GO:0007051;spindle organization and biogenesis;7.09709796540675e-05!GO:0016779;nucleotidyltransferase activity;7.11725394213663e-05!GO:0016740;transferase activity;8.44137136984713e-05!GO:0005762;mitochondrial large ribosomal subunit;8.44137136984713e-05!GO:0000315;organellar large ribosomal subunit;8.44137136984713e-05!GO:0019867;outer membrane;8.47381346431925e-05!GO:0030867;rough endoplasmic reticulum membrane;9.23326213319804e-05!GO:0048471;perinuclear region of cytoplasm;0.000103488052691443!GO:0001558;regulation of cell growth;0.00010510108729835!GO:0030029;actin filament-based process;0.000108229880999571!GO:0051329;interphase of mitotic cell cycle;0.000116260036701665!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000116749744347036!GO:0051427;hormone receptor binding;0.000124714954697436!GO:0009108;coenzyme biosynthetic process;0.000126188388734361!GO:0005048;signal sequence binding;0.000157290668541479!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000158693471876147!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000185528840344278!GO:0016853;isomerase activity;0.000192030883782859!GO:0008654;phospholipid biosynthetic process;0.000197659784114029!GO:0007264;small GTPase mediated signal transduction;0.000204116209465135!GO:0045454;cell redox homeostasis;0.000211717716849787!GO:0016859;cis-trans isomerase activity;0.000213106467787684!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000242746044180993!GO:0015399;primary active transmembrane transporter activity;0.000242746044180993!GO:0005741;mitochondrial outer membrane;0.000245571900476471!GO:0035257;nuclear hormone receptor binding;0.00024835716549079!GO:0033116;ER-Golgi intermediate compartment membrane;0.00025196318746418!GO:0051168;nuclear export;0.000266564222745421!GO:0030663;COPI coated vesicle membrane;0.00035118547543289!GO:0030126;COPI vesicle coat;0.00035118547543289!GO:0003779;actin binding;0.000353145836616532!GO:0006612;protein targeting to membrane;0.000363793987599327!GO:0048522;positive regulation of cellular process;0.000367177162002432!GO:0005874;microtubule;0.000373681137074219!GO:0019899;enzyme binding;0.000398242160503194!GO:0008186;RNA-dependent ATPase activity;0.000437987592975928!GO:0008250;oligosaccharyl transferase complex;0.000438549344149301!GO:0030137;COPI-coated vesicle;0.000462320961857339!GO:0043021;ribonucleoprotein binding;0.000468639539720873!GO:0005885;Arp2/3 protein complex;0.0005054128255783!GO:0016044;membrane organization and biogenesis;0.000560979462307829!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000564991145927082!GO:0019222;regulation of metabolic process;0.000580215272404736!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000585395374735594!GO:0001726;ruffle;0.000641231105201119!GO:0000776;kinetochore;0.000679316649330431!GO:0031901;early endosome membrane;0.000683511702108886!GO:0003690;double-stranded DNA binding;0.00068384063748145!GO:0007243;protein kinase cascade;0.000710080791480082!GO:0000075;cell cycle checkpoint;0.000749388093237688!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000772772796468767!GO:0051920;peroxiredoxin activity;0.000824583083261402!GO:0030133;transport vesicle;0.000824583083261402!GO:0015980;energy derivation by oxidation of organic compounds;0.000830966116899609!GO:0000314;organellar small ribosomal subunit;0.000845963120596608!GO:0005763;mitochondrial small ribosomal subunit;0.000845963120596608!GO:0000059;protein import into nucleus, docking;0.00085687435900298!GO:0004576;oligosaccharyl transferase activity;0.000865547814205918!GO:0030658;transport vesicle membrane;0.00088269712575204!GO:0045892;negative regulation of transcription, DNA-dependent;0.000924776026388198!GO:0042802;identical protein binding;0.000994789101074338!GO:0018196;peptidyl-asparagine modification;0.00101502287959659!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00101502287959659!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00103723184359985!GO:0065007;biological regulation;0.00109465011954311!GO:0016363;nuclear matrix;0.00116209992820369!GO:0015631;tubulin binding;0.00116412575732816!GO:0007050;cell cycle arrest;0.00121023543037683!GO:0043492;ATPase activity, coupled to movement of substances;0.00121698587331047!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00122690138142158!GO:0004004;ATP-dependent RNA helicase activity;0.00123533579254782!GO:0003682;chromatin binding;0.00125891335787057!GO:0004674;protein serine/threonine kinase activity;0.00130661862913216!GO:0006091;generation of precursor metabolites and energy;0.00133267528547075!GO:0003729;mRNA binding;0.00135908366205051!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00146490296672163!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00149291646604796!GO:0030659;cytoplasmic vesicle membrane;0.00159421704063526!GO:0003899;DNA-directed RNA polymerase activity;0.00177623363756677!GO:0030118;clathrin coat;0.00184155454878642!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00184155454878642!GO:0005856;cytoskeleton;0.0018986867225388!GO:0051252;regulation of RNA metabolic process;0.0019922051742508!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00204387422450395!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00204980181046039!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00204980181046039!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00204980181046039!GO:0043284;biopolymer biosynthetic process;0.00206081319768715!GO:0006302;double-strand break repair;0.00208553658683276!GO:0008139;nuclear localization sequence binding;0.00211624120741912!GO:0006892;post-Golgi vesicle-mediated transport;0.00221194508227637!GO:0045941;positive regulation of transcription;0.00226687497480741!GO:0016197;endosome transport;0.00227260057973613!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00230946622834131!GO:0005791;rough endoplasmic reticulum;0.00237549474578622!GO:0006383;transcription from RNA polymerase III promoter;0.00239022759405589!GO:0030134;ER to Golgi transport vesicle;0.00246064755473236!GO:0030127;COPII vesicle coat;0.00249426648020187!GO:0012507;ER to Golgi transport vesicle membrane;0.00249426648020187!GO:0006414;translational elongation;0.00260161529963126!GO:0008022;protein C-terminus binding;0.00260257295297187!GO:0030660;Golgi-associated vesicle membrane;0.00276298336904929!GO:0030027;lamellipodium;0.00280325103031166!GO:0019843;rRNA binding;0.00324724691308094!GO:0045045;secretory pathway;0.00330078594024029!GO:0030132;clathrin coat of coated pit;0.00340873932865358!GO:0006402;mRNA catabolic process;0.00340886122241031!GO:0006891;intra-Golgi vesicle-mediated transport;0.00350408131088255!GO:0005637;nuclear inner membrane;0.00360739639053776!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00360739639053776!GO:0045893;positive regulation of transcription, DNA-dependent;0.00362467204811999!GO:0051287;NAD binding;0.0036375144317446!GO:0006818;hydrogen transport;0.00377262755574013!GO:0046474;glycerophospholipid biosynthetic process;0.00381696302796422!GO:0040008;regulation of growth;0.00386432371350705!GO:0044262;cellular carbohydrate metabolic process;0.00386647301518936!GO:0008632;apoptotic program;0.00389113953359752!GO:0044433;cytoplasmic vesicle part;0.00438071921412431!GO:0048500;signal recognition particle;0.00439663462488435!GO:0005938;cell cortex;0.00442496319909959!GO:0006839;mitochondrial transport;0.00456146117437933!GO:0006352;transcription initiation;0.00456146117437933!GO:0017166;vinculin binding;0.00462632384121837!GO:0003684;damaged DNA binding;0.00519147555689877!GO:0007052;mitotic spindle organization and biogenesis;0.00535243696422998!GO:0009165;nucleotide biosynthetic process;0.00535314331179487!GO:0030521;androgen receptor signaling pathway;0.00541985681053452!GO:0015992;proton transport;0.00545895399752102!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00569543935844306!GO:0007265;Ras protein signal transduction;0.00578180213636212!GO:0048468;cell development;0.0059204941534116!GO:0031072;heat shock protein binding;0.00620379833778595!GO:0035258;steroid hormone receptor binding;0.00627908723886343!GO:0043681;protein import into mitochondrion;0.00629176826572706!GO:0003711;transcription elongation regulator activity;0.00631109450700001!GO:0048487;beta-tubulin binding;0.00649669843786828!GO:0008047;enzyme activator activity;0.0065469681793011!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0066308883317253!GO:0006509;membrane protein ectodomain proteolysis;0.0066512917463183!GO:0033619;membrane protein proteolysis;0.0066512917463183!GO:0006607;NLS-bearing substrate import into nucleus;0.00697207352486502!GO:0012506;vesicle membrane;0.00707890356356854!GO:0005657;replication fork;0.00760557498018645!GO:0000910;cytokinesis;0.00775519408579315!GO:0007033;vacuole organization and biogenesis;0.00786287905704203!GO:0008094;DNA-dependent ATPase activity;0.00789812489398686!GO:0051087;chaperone binding;0.00813987989078199!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00814364283413107!GO:0030032;lamellipodium biogenesis;0.00818517771413559!GO:0006650;glycerophospholipid metabolic process;0.00821530524136841!GO:0007093;mitotic cell cycle checkpoint;0.00882807959958083!GO:0008234;cysteine-type peptidase activity;0.00900056475503756!GO:0005869;dynactin complex;0.00954366270383137!GO:0006284;base-excision repair;0.00955788037106698!GO:0043488;regulation of mRNA stability;0.00957008440653188!GO:0043487;regulation of RNA stability;0.00957008440653188!GO:0008287;protein serine/threonine phosphatase complex;0.00977644609803893!GO:0006401;RNA catabolic process;0.00980841454231511!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0098813806412099!GO:0051052;regulation of DNA metabolic process;0.00989473779795078!GO:0031124;mRNA 3'-end processing;0.0103203589069062!GO:0006289;nucleotide-excision repair;0.0103352276488162!GO:0003678;DNA helicase activity;0.0104569160630642!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0107688092800561!GO:0045047;protein targeting to ER;0.0107688092800561!GO:0031529;ruffle organization and biogenesis;0.0108550563779216!GO:0005876;spindle microtubule;0.0111908956692242!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0115448881720608!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0117347539516838!GO:0030125;clathrin vesicle coat;0.0117773850433306!GO:0030665;clathrin coated vesicle membrane;0.0117773850433306!GO:0007006;mitochondrial membrane organization and biogenesis;0.0117987186655738!GO:0030119;AP-type membrane coat adaptor complex;0.0117987186655738!GO:0005096;GTPase activator activity;0.0119964433668632!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0128068390415019!GO:0007030;Golgi organization and biogenesis;0.0129954366920959!GO:0016584;nucleosome positioning;0.0131770437511463!GO:0065009;regulation of a molecular function;0.013338865886456!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0134384355620665!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0134384355620665!GO:0006595;polyamine metabolic process;0.0139163886976866!GO:0019206;nucleoside kinase activity;0.0140369553284414!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0144817005535465!GO:0031323;regulation of cellular metabolic process;0.014703079422662!GO:0032508;DNA duplex unwinding;0.0153555139120087!GO:0032392;DNA geometric change;0.0153555139120087!GO:0031625;ubiquitin protein ligase binding;0.015432388655587!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0155114955073218!GO:0030176;integral to endoplasmic reticulum membrane;0.015777439852487!GO:0006626;protein targeting to mitochondrion;0.0157841166117729!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0157992194967195!GO:0007059;chromosome segregation;0.0163300638700396!GO:0007040;lysosome organization and biogenesis;0.0163838600646149!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0164437814458015!GO:0007017;microtubule-based process;0.0167854532361614!GO:0046483;heterocycle metabolic process;0.0169707817435208!GO:0045792;negative regulation of cell size;0.0169707817435208!GO:0008312;7S RNA binding;0.0170480212951475!GO:0030131;clathrin adaptor complex;0.0172015297616272!GO:0006611;protein export from nucleus;0.0172037126415143!GO:0000792;heterochromatin;0.0172775048022387!GO:0048518;positive regulation of biological process;0.0172961526223279!GO:0050681;androgen receptor binding;0.01730757520117!GO:0000118;histone deacetylase complex;0.0176897121436487!GO:0030865;cortical cytoskeleton organization and biogenesis;0.01796187175946!GO:0031543;peptidyl-proline dioxygenase activity;0.0181481555803123!GO:0000082;G1/S transition of mitotic cell cycle;0.0184343098819493!GO:0006405;RNA export from nucleus;0.0184425944336896!GO:0008601;protein phosphatase type 2A regulator activity;0.0186340904572641!GO:0007088;regulation of mitosis;0.0194797162862102!GO:0032906;transforming growth factor-beta2 production;0.0194797162862102!GO:0032909;regulation of transforming growth factor-beta2 production;0.0194797162862102!GO:0016791;phosphoric monoester hydrolase activity;0.0196315166204694!GO:0030308;negative regulation of cell growth;0.0198055732454616!GO:0022890;inorganic cation transmembrane transporter activity;0.0199130976323609!GO:0000209;protein polyubiquitination;0.0199167581405046!GO:0005862;muscle thin filament tropomyosin;0.0205024696682261!GO:0003746;translation elongation factor activity;0.0205024696682261!GO:0006338;chromatin remodeling;0.0209426543168178!GO:0000786;nucleosome;0.0209426543168178!GO:0033673;negative regulation of kinase activity;0.0210013097786537!GO:0006469;negative regulation of protein kinase activity;0.0210013097786537!GO:0046822;regulation of nucleocytoplasmic transport;0.0212768486859679!GO:0005684;U2-dependent spliceosome;0.0215370946124377!GO:0043022;ribosome binding;0.0215539014269199!GO:0051128;regulation of cellular component organization and biogenesis;0.0217102739941108!GO:0016311;dephosphorylation;0.0217843939100069!GO:0032940;secretion by cell;0.021858996978181!GO:0000339;RNA cap binding;0.0218702123798228!GO:0007242;intracellular signaling cascade;0.0222749058058132!GO:0005832;chaperonin-containing T-complex;0.0229403031952547!GO:0030880;RNA polymerase complex;0.0229485302230128!GO:0000159;protein phosphatase type 2A complex;0.023117402939269!GO:0043065;positive regulation of apoptosis;0.0234914636595064!GO:0006268;DNA unwinding during replication;0.023557826431648!GO:0000922;spindle pole;0.0237824972745939!GO:0051101;regulation of DNA binding;0.0237824972745939!GO:0046467;membrane lipid biosynthetic process;0.0237824972745939!GO:0031902;late endosome membrane;0.0241946358559225!GO:0043068;positive regulation of programmed cell death;0.0250677343930126!GO:0016301;kinase activity;0.0250911498568638!GO:0006350;transcription;0.0250911498568638!GO:0051348;negative regulation of transferase activity;0.0255634124067575!GO:0035035;histone acetyltransferase binding;0.0257788356509592!GO:0050839;cell adhesion molecule binding;0.0258301030367346!GO:0008147;structural constituent of bone;0.0261034210914028!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0267975470519989!GO:0016272;prefoldin complex;0.0275350519355638!GO:0022415;viral reproductive process;0.0276561330552234!GO:0004177;aminopeptidase activity;0.0277412441243297!GO:0000049;tRNA binding;0.0277678957079652!GO:0009967;positive regulation of signal transduction;0.0277678957079652!GO:0005669;transcription factor TFIID complex;0.0279238471756898!GO:0007021;tubulin folding;0.0279238471756898!GO:0009116;nucleoside metabolic process;0.0284001866485257!GO:0006220;pyrimidine nucleotide metabolic process;0.0284387090710722!GO:0006897;endocytosis;0.0294482352656672!GO:0010324;membrane invagination;0.0294482352656672!GO:0004843;ubiquitin-specific protease activity;0.0297059009250825!GO:0004722;protein serine/threonine phosphatase activity;0.0297059009250825!GO:0006979;response to oxidative stress;0.0303114022623437!GO:0030518;steroid hormone receptor signaling pathway;0.0303798401441754!GO:0040029;regulation of gene expression, epigenetic;0.0306698747192149!GO:0043130;ubiquitin binding;0.0308501764277911!GO:0032182;small conjugating protein binding;0.0308501764277911!GO:0030496;midbody;0.030895865968717!GO:0019783;small conjugating protein-specific protease activity;0.0310332818223801!GO:0006672;ceramide metabolic process;0.0318053070868274!GO:0046489;phosphoinositide biosynthetic process;0.0321441120720202!GO:0006497;protein amino acid lipidation;0.0322440212775026!GO:0005083;small GTPase regulator activity;0.0323749197780868!GO:0032507;maintenance of cellular protein localization;0.0332128126921849!GO:0008610;lipid biosynthetic process;0.0334459247231201!GO:0006950;response to stress;0.0353687194351612!GO:0042770;DNA damage response, signal transduction;0.0353687194351612!GO:0000287;magnesium ion binding;0.0356691573923365!GO:0008629;induction of apoptosis by intracellular signals;0.0358265766987501!GO:0005784;translocon complex;0.0359594948197308!GO:0019798;procollagen-proline dioxygenase activity;0.0361107331772738!GO:0044452;nucleolar part;0.0362824991932146!GO:0006144;purine base metabolic process;0.0363275561133957!GO:0050178;phenylpyruvate tautomerase activity;0.0363276125197462!GO:0030384;phosphoinositide metabolic process;0.0364975883664434!GO:0046983;protein dimerization activity;0.0364991703384381!GO:0046426;negative regulation of JAK-STAT cascade;0.0365287451194709!GO:0045334;clathrin-coated endocytic vesicle;0.0372914662060648!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0380969378362758!GO:0000428;DNA-directed RNA polymerase complex;0.0380969378362758!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0382371593116839!GO:0043414;biopolymer methylation;0.0385174641561696!GO:0030911;TPR domain binding;0.0390313177120481!GO:0031123;RNA 3'-end processing;0.0392340201819738!GO:0003702;RNA polymerase II transcription factor activity;0.0395753038051359!GO:0004221;ubiquitin thiolesterase activity;0.0401933898506028!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0402525304956351!GO:0015002;heme-copper terminal oxidase activity;0.0402525304956351!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0402525304956351!GO:0004129;cytochrome-c oxidase activity;0.0402525304956351!GO:0016790;thiolester hydrolase activity;0.0409774167728669!GO:0050811;GABA receptor binding;0.0411966548523569!GO:0006310;DNA recombination;0.041448012600235!GO:0006740;NADPH regeneration;0.041448012600235!GO:0006098;pentose-phosphate shunt;0.041448012600235!GO:0032200;telomere organization and biogenesis;0.041691996401537!GO:0000723;telomere maintenance;0.041691996401537!GO:0006376;mRNA splice site selection;0.0420248950339131!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0420248950339131!GO:0004721;phosphoprotein phosphatase activity;0.042977842900306!GO:0044448;cell cortex part;0.0445410485509325!GO:0005774;vacuolar membrane;0.0449135252233913!GO:0006984;ER-nuclear signaling pathway;0.0456873259225988!GO:0003756;protein disulfide isomerase activity;0.0461046026431058!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0461046026431058!GO:0006275;regulation of DNA replication;0.0466450642646072!GO:0008180;signalosome;0.0468814407653325!GO:0016581;NuRD complex;0.0483807422679101!GO:0047485;protein N-terminus binding;0.0483807422679101!GO:0032259;methylation;0.0486099334805062!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0494350429890561!GO:0004197;cysteine-type endopeptidase activity;0.0494405172691367 | |||
|sample_id=10624 | |sample_id=10624 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=ovary | |sample_tissue=ovary | ||
|top_motifs=HMGA1,2:1.54401233626;POU5F1:1.49704109751;NKX3-1:1.49248177018;EVI1:1.48543001462;PAX8:1.44393668466;NKX2-1,4:1.42019408994;TEF:1.33649329046;PAX4:1.1147838881;ATF6:1.06057471838;VSX1,2:1.05295146939;TEAD1:1.03710603273;MTE{core}:1.03699183366;GATA4:0.958737249513;NR6A1:0.956430630514;POU3F1..4:0.937287423995;UFEwm:0.901347057184;GTF2A1,2:0.889081574405;RXRA_VDR{dimer}:0.883058431577;TBX4,5:0.829330755197;HIC1:0.807773537723;EN1,2:0.802114677024;ZBTB16:0.769882703852;MYBL2:0.759715724292;AIRE:0.75923831346;NR3C1:0.75413729759;HOX{A5,B5}:0.748264385489;FOXD3:0.743432225336;GLI1..3:0.691364943294;HIF1A:0.656478020107;POU6F1:0.634542585874;FOXA2:0.630256644525;HOX{A4,D4}:0.607926141685;NKX6-1,2:0.600558638824;TFAP2{A,C}:0.553453717168;SRF:0.5512038126;FOXL1:0.539960609887;SOX17:0.519924672271;PRDM1:0.519338523432;TFDP1:0.511227248952;DBP:0.484041732685;TFCP2:0.477489151489;NFATC1..3:0.470654128049;ZFP161:0.464304063354;EGR1..3:0.462809093116;ZNF384:0.452244233958;T:0.447017282822;TFAP2B:0.444694032661;PITX1..3:0.410486200481;TOPORS:0.395426765802;LMO2:0.393444406408;FOXP1:0.376878635547;HOXA9_MEIS1:0.369158054901;ARID5B:0.365334824056;ZNF423:0.360217698863;TAL1_TCF{3,4,12}:0.35247186964;MAZ:0.346432089269;AHR_ARNT_ARNT2:0.322230270399;PAX3,7:0.316165567139;ZBTB6:0.297138826511;POU1F1:0.295566113635;GZF1:0.284528187599;TLX1..3_NFIC{dimer}:0.283904134005;ONECUT1,2:0.276803478438;CDC5L:0.275792797038;ZNF143:0.273701819134;TFAP4:0.251512485892;MYFfamily:0.241781812638;MED-1{core}:0.238005248251;IRF1,2:0.231958988106;SMAD1..7,9:0.220553633108;ZIC1..3:0.217634577693;GTF2I:0.202314626863;GCM1,2:0.201051446422;E2F1..5:0.198789645185;ADNP_IRX_SIX_ZHX:0.195291815989;NFE2L2:0.193256500037;XCPE1{core}:0.191328211746;RFX1:0.183476527755;SOX2:0.171665596869;LHX3,4:0.16683879212;MZF1:0.143148043493;HNF1A:0.117393867745;KLF4:0.0876226299925;NKX3-2:0.086947632744;ALX1:0.0676583035281;IKZF2:0.0611277137198;MEF2{A,B,C,D}:0.0593277796979;AR:0.0546037502072;BACH2:0.0506586574824;ESRRA:0.0479935308478;GFI1:0.0456673058085;SP1:0.0403991917424;MAFB:0.0345839885171;PATZ1:0.0295478222575;FOSL2:0.0258449029731;REST:0.0174114820221;NR5A1,2:0.0131493183371;NKX2-2,8:0.000864558647832;OCT4_SOX2{dimer}:-0.0235135904574;NHLH1,2:-0.0268893543832;FOX{D1,D2}:-0.0288758381867;ZNF148:-0.0332312790281;GFI1B:-0.0368643493729;LEF1_TCF7_TCF7L1,2:-0.0412789897424;XBP1:-0.045815974273;HOX{A6,A7,B6,B7}:-0.0604203367365;NRF1:-0.0634240500515;HBP1_HMGB_SSRP1_UBTF:-0.0712034449485;NKX2-3_NKX2-5:-0.0802509738858;MYB:-0.0805558637755;HAND1,2:-0.0836672797052;NFE2L1:-0.0851186958236;FOX{F1,F2,J1}:-0.0899481502083;FOS_FOS{B,L1}_JUN{B,D}:-0.0921051740518;PAX6:-0.0979139634818;NR1H4:-0.10425047325;SNAI1..3:-0.105825649534;TBP:-0.124777239318;PAX5:-0.139022251611;PPARG:-0.141235234587;BREu{core}:-0.162461410058;EP300:-0.164786149788;MYOD1:-0.165345701703;GATA6:-0.17340451516;SOX{8,9,10}:-0.186434129594;STAT2,4,6:-0.194002979184;ALX4:-0.194993747377;IKZF1:-0.201161126595;NFY{A,B,C}:-0.201301423109;TP53:-0.203199157464;CREB1:-0.2095788451;BPTF:-0.211182646578;ATF4:-0.219110625421;bHLH_family:-0.230262854567;POU2F1..3:-0.241100552457;ATF5_CREB3:-0.241614791923;HLF:-0.249091083629;HNF4A_NR2F1,2:-0.266943425405;NFKB1_REL_RELA:-0.278986493574;ELK1,4_GABP{A,B1}:-0.306955044286;PAX1,9:-0.328374833837;CUX2:-0.334008624205;NFE2:-0.334064749495;FOXO1,3,4:-0.342504277122;ZEB1:-0.342942903506;RXR{A,B,G}:-0.347661558765;HES1:-0.351085781664;FOXP3:-0.360248020413;CEBPA,B_DDIT3:-0.374352491461;DMAP1_NCOR{1,2}_SMARC:-0.376743226221;PAX2:-0.383832096217;IRF7:-0.385461905229;NFIX:-0.389226610402;STAT5{A,B}:-0.398083421248;HMX1:-0.402392764432;HSF1,2:-0.411697882009;ESR1:-0.414824686815;RREB1:-0.438146462495;SPZ1:-0.448189655955;ZNF238:-0.46369199554;MTF1:-0.476995853584;SOX5:-0.484811142367;NFIL3:-0.503479277008;SREBF1,2:-0.513119397192;TGIF1:-0.544548386759;CRX:-0.547683521843;FOXN1:-0.555720993916;RORA:-0.558376584532;RUNX1..3:-0.57094438019;SPIB:-0.576974966016;YY1:-0.597579595043;ETS1,2:-0.619534446424;ATF2:-0.639582672374;FOXM1:-0.643771943219;SPI1:-0.682087249716;JUN:-0.686075420564;CDX1,2,4:-0.689554089671;STAT1,3:-0.691450834686;NANOG:-0.713551344164;ELF1,2,4:-0.723355924636;EBF1:-0.749050148561;NANOG{mouse}:-0.850303340607;PDX1:-0.971915299612;PRRX1,2:-1.02944584264;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.07166189155;RFX2..5_RFXANK_RFXAP:-1.0881269854;TLX2:-1.10042487581;FOX{I1,J2}:-1.11574310035;PBX1:-1.26720025468;RBPJ:-1.4672822168;FOXQ1:-1.61933635968;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.64912357937 | |top_motifs=HMGA1,2:1.54401233626;POU5F1:1.49704109751;NKX3-1:1.49248177018;EVI1:1.48543001462;PAX8:1.44393668466;NKX2-1,4:1.42019408994;TEF:1.33649329046;PAX4:1.1147838881;ATF6:1.06057471838;VSX1,2:1.05295146939;TEAD1:1.03710603273;MTE{core}:1.03699183366;GATA4:0.958737249513;NR6A1:0.956430630514;POU3F1..4:0.937287423995;UFEwm:0.901347057184;GTF2A1,2:0.889081574405;RXRA_VDR{dimer}:0.883058431577;TBX4,5:0.829330755197;HIC1:0.807773537723;EN1,2:0.802114677024;ZBTB16:0.769882703852;MYBL2:0.759715724292;AIRE:0.75923831346;NR3C1:0.75413729759;HOX{A5,B5}:0.748264385489;FOXD3:0.743432225336;GLI1..3:0.691364943294;HIF1A:0.656478020107;POU6F1:0.634542585874;FOXA2:0.630256644525;HOX{A4,D4}:0.607926141685;NKX6-1,2:0.600558638824;TFAP2{A,C}:0.553453717168;SRF:0.5512038126;FOXL1:0.539960609887;SOX17:0.519924672271;PRDM1:0.519338523432;TFDP1:0.511227248952;DBP:0.484041732685;TFCP2:0.477489151489;NFATC1..3:0.470654128049;ZFP161:0.464304063354;EGR1..3:0.462809093116;ZNF384:0.452244233958;T:0.447017282822;TFAP2B:0.444694032661;PITX1..3:0.410486200481;TOPORS:0.395426765802;LMO2:0.393444406408;FOXP1:0.376878635547;HOXA9_MEIS1:0.369158054901;ARID5B:0.365334824056;ZNF423:0.360217698863;TAL1_TCF{3,4,12}:0.35247186964;MAZ:0.346432089269;AHR_ARNT_ARNT2:0.322230270399;PAX3,7:0.316165567139;ZBTB6:0.297138826511;POU1F1:0.295566113635;GZF1:0.284528187599;TLX1..3_NFIC{dimer}:0.283904134005;ONECUT1,2:0.276803478438;CDC5L:0.275792797038;ZNF143:0.273701819134;TFAP4:0.251512485892;MYFfamily:0.241781812638;MED-1{core}:0.238005248251;IRF1,2:0.231958988106;SMAD1..7,9:0.220553633108;ZIC1..3:0.217634577693;GTF2I:0.202314626863;GCM1,2:0.201051446422;E2F1..5:0.198789645185;ADNP_IRX_SIX_ZHX:0.195291815989;NFE2L2:0.193256500037;XCPE1{core}:0.191328211746;RFX1:0.183476527755;SOX2:0.171665596869;LHX3,4:0.16683879212;MZF1:0.143148043493;HNF1A:0.117393867745;KLF4:0.0876226299925;NKX3-2:0.086947632744;ALX1:0.0676583035281;IKZF2:0.0611277137198;MEF2{A,B,C,D}:0.0593277796979;AR:0.0546037502072;BACH2:0.0506586574824;ESRRA:0.0479935308478;GFI1:0.0456673058085;SP1:0.0403991917424;MAFB:0.0345839885171;PATZ1:0.0295478222575;FOSL2:0.0258449029731;REST:0.0174114820221;NR5A1,2:0.0131493183371;NKX2-2,8:0.000864558647832;OCT4_SOX2{dimer}:-0.0235135904574;NHLH1,2:-0.0268893543832;FOX{D1,D2}:-0.0288758381867;ZNF148:-0.0332312790281;GFI1B:-0.0368643493729;LEF1_TCF7_TCF7L1,2:-0.0412789897424;XBP1:-0.045815974273;HOX{A6,A7,B6,B7}:-0.0604203367365;NRF1:-0.0634240500515;HBP1_HMGB_SSRP1_UBTF:-0.0712034449485;NKX2-3_NKX2-5:-0.0802509738858;MYB:-0.0805558637755;HAND1,2:-0.0836672797052;NFE2L1:-0.0851186958236;FOX{F1,F2,J1}:-0.0899481502083;FOS_FOS{B,L1}_JUN{B,D}:-0.0921051740518;PAX6:-0.0979139634818;NR1H4:-0.10425047325;SNAI1..3:-0.105825649534;TBP:-0.124777239318;PAX5:-0.139022251611;PPARG:-0.141235234587;BREu{core}:-0.162461410058;EP300:-0.164786149788;MYOD1:-0.165345701703;GATA6:-0.17340451516;SOX{8,9,10}:-0.186434129594;STAT2,4,6:-0.194002979184;ALX4:-0.194993747377;IKZF1:-0.201161126595;NFY{A,B,C}:-0.201301423109;TP53:-0.203199157464;CREB1:-0.2095788451;BPTF:-0.211182646578;ATF4:-0.219110625421;bHLH_family:-0.230262854567;POU2F1..3:-0.241100552457;ATF5_CREB3:-0.241614791923;HLF:-0.249091083629;HNF4A_NR2F1,2:-0.266943425405;NFKB1_REL_RELA:-0.278986493574;ELK1,4_GABP{A,B1}:-0.306955044286;PAX1,9:-0.328374833837;CUX2:-0.334008624205;NFE2:-0.334064749495;FOXO1,3,4:-0.342504277122;ZEB1:-0.342942903506;RXR{A,B,G}:-0.347661558765;HES1:-0.351085781664;FOXP3:-0.360248020413;CEBPA,B_DDIT3:-0.374352491461;DMAP1_NCOR{1,2}_SMARC:-0.376743226221;PAX2:-0.383832096217;IRF7:-0.385461905229;NFIX:-0.389226610402;STAT5{A,B}:-0.398083421248;HMX1:-0.402392764432;HSF1,2:-0.411697882009;ESR1:-0.414824686815;RREB1:-0.438146462495;SPZ1:-0.448189655955;ZNF238:-0.46369199554;MTF1:-0.476995853584;SOX5:-0.484811142367;NFIL3:-0.503479277008;SREBF1,2:-0.513119397192;TGIF1:-0.544548386759;CRX:-0.547683521843;FOXN1:-0.555720993916;RORA:-0.558376584532;RUNX1..3:-0.57094438019;SPIB:-0.576974966016;YY1:-0.597579595043;ETS1,2:-0.619534446424;ATF2:-0.639582672374;FOXM1:-0.643771943219;SPI1:-0.682087249716;JUN:-0.686075420564;CDX1,2,4:-0.689554089671;STAT1,3:-0.691450834686;NANOG:-0.713551344164;ELF1,2,4:-0.723355924636;EBF1:-0.749050148561;NANOG{mouse}:-0.850303340607;PDX1:-0.971915299612;PRRX1,2:-1.02944584264;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.07166189155;RFX2..5_RFXANK_RFXAP:-1.0881269854;TLX2:-1.10042487581;FOX{I1,J2}:-1.11574310035;PBX1:-1.26720025468;RBPJ:-1.4672822168;FOXQ1:-1.61933635968;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.64912357937 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10624-108H3;search_select_hide=table117:FF:10624-108H3 | |||
}} | }} | ||
Latest revision as of 14:31, 3 June 2020
| Name: | granulosa cell tumor cell line:KGN |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11740 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11740
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11740
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.436 |
| 10 | 10 | 0.157 |
| 100 | 100 | 0.78 |
| 101 | 101 | 0.698 |
| 102 | 102 | 0.199 |
| 103 | 103 | 0.0651 |
| 104 | 104 | 0.692 |
| 105 | 105 | 0.111 |
| 106 | 106 | 0.233 |
| 107 | 107 | 0.0485 |
| 108 | 108 | 0.898 |
| 109 | 109 | 0.0766 |
| 11 | 11 | 0.085 |
| 110 | 110 | 0.45 |
| 111 | 111 | 0.247 |
| 112 | 112 | 0.031 |
| 113 | 113 | 0.0315 |
| 114 | 114 | 0.947 |
| 115 | 115 | 0.0304 |
| 116 | 116 | 0.884 |
| 117 | 117 | 0.00125 |
| 118 | 118 | 0.877 |
| 119 | 119 | 0.808 |
| 12 | 12 | 0.00551 |
| 120 | 120 | 0.918 |
| 121 | 121 | 0.0543 |
| 122 | 122 | 0.3 |
| 123 | 123 | 0.793 |
| 124 | 124 | 0.641 |
| 125 | 125 | 0.999 |
| 126 | 126 | 0.276 |
| 127 | 127 | 0.521 |
| 128 | 128 | 0.897 |
| 129 | 129 | 0.0802 |
| 13 | 13 | 0.105 |
| 130 | 130 | 0.262 |
| 131 | 131 | 0.451 |
| 132 | 132 | 0.832 |
| 133 | 133 | 0.173 |
| 134 | 134 | 0.488 |
| 135 | 135 | 0.963 |
| 136 | 136 | 0.538 |
| 137 | 137 | 0.0263 |
| 138 | 138 | 0.399 |
| 139 | 139 | 0.188 |
| 14 | 14 | 0.308 |
| 140 | 140 | 0.587 |
| 141 | 141 | 0.167 |
| 142 | 142 | 0.619 |
| 143 | 143 | 0.688 |
| 144 | 144 | 0.65 |
| 145 | 145 | 0.273 |
| 146 | 146 | 0.7 |
| 147 | 147 | 0.0459 |
| 148 | 148 | 0.398 |
| 149 | 149 | 0.56 |
| 15 | 15 | 0.71 |
| 150 | 150 | 0.947 |
| 151 | 151 | 0.989 |
| 152 | 152 | 0.832 |
| 153 | 153 | 0.181 |
| 154 | 154 | 0.637 |
| 155 | 155 | 0.0246 |
| 156 | 156 | 0.172 |
| 157 | 157 | 0.296 |
| 158 | 158 | 0.00156 |
| 159 | 159 | 0.185 |
| 16 | 16 | 0.211 |
| 160 | 160 | 0.638 |
| 161 | 161 | 0.998 |
| 162 | 162 | 0.997 |
| 163 | 163 | 0.44 |
| 164 | 164 | 0.588 |
| 165 | 165 | 0.821 |
| 166 | 166 | 0.00228 |
| 167 | 167 | 0.684 |
| 168 | 168 | 0.256 |
| 169 | 169 | 0.138 |
| 17 | 17 | 0.79 |
| 18 | 18 | 0.432 |
| 19 | 19 | 0.684 |
| 2 | 2 | 0.97 |
| 20 | 20 | 0.404 |
| 21 | 21 | 0.315 |
| 22 | 22 | 0.0971 |
| 23 | 23 | 0.574 |
| 24 | 24 | 0.388 |
| 25 | 25 | 0.189 |
| 26 | 26 | 0.704 |
| 27 | 27 | 0.531 |
| 28 | 28 | 0.702 |
| 29 | 29 | 0.431 |
| 3 | 3 | 0.301 |
| 30 | 30 | 0.769 |
| 31 | 31 | 0.535 |
| 32 | 32 | 6.87189e-5 |
| 33 | 33 | 0.351 |
| 34 | 34 | 0.742 |
| 35 | 35 | 0.418 |
| 36 | 36 | 0.262 |
| 37 | 37 | 0.0168 |
| 38 | 38 | 0.31 |
| 39 | 39 | 0.493 |
| 4 | 4 | 0.533 |
| 40 | 40 | 0.194 |
| 41 | 41 | 0.721 |
| 42 | 42 | 0.399 |
| 43 | 43 | 0.407 |
| 44 | 44 | 0.32 |
| 45 | 45 | 0.25 |
| 46 | 46 | 0.657 |
| 47 | 47 | 0.236 |
| 48 | 48 | 0.324 |
| 49 | 49 | 0.232 |
| 5 | 5 | 0.92 |
| 50 | 50 | 0.857 |
| 51 | 51 | 0.383 |
| 52 | 52 | 0.848 |
| 53 | 53 | 0.24 |
| 54 | 54 | 0.936 |
| 55 | 55 | 0.692 |
| 56 | 56 | 0.853 |
| 57 | 57 | 0.702 |
| 58 | 58 | 0.079 |
| 59 | 59 | 0.357 |
| 6 | 6 | 0.447 |
| 60 | 60 | 0.217 |
| 61 | 61 | 0.993 |
| 62 | 62 | 0.47 |
| 63 | 63 | 0.713 |
| 64 | 64 | 0.33 |
| 65 | 65 | 0.19 |
| 66 | 66 | 0.964 |
| 67 | 67 | 0.981 |
| 68 | 68 | 0.416 |
| 69 | 69 | 0.848 |
| 7 | 7 | 0.0951 |
| 70 | 70 | 0.817 |
| 71 | 71 | 0.0516 |
| 72 | 72 | 0.0678 |
| 73 | 73 | 0.394 |
| 74 | 74 | 0.0338 |
| 75 | 75 | 0.0804 |
| 76 | 76 | 0.0865 |
| 77 | 77 | 0.664 |
| 78 | 78 | 0.054 |
| 79 | 79 | 0.0664 |
| 8 | 8 | 0.566 |
| 80 | 80 | 0.0579 |
| 81 | 81 | 0.595 |
| 82 | 82 | 0.934 |
| 83 | 83 | 0.913 |
| 84 | 84 | 0.657 |
| 85 | 85 | 0.916 |
| 86 | 86 | 0.553 |
| 87 | 87 | 0.894 |
| 88 | 88 | 0.949 |
| 89 | 89 | 0.983 |
| 9 | 9 | 0.0844 |
| 90 | 90 | 0.42 |
| 91 | 91 | 0.988 |
| 92 | 92 | 0.925 |
| 93 | 93 | 0.727 |
| 94 | 94 | 0.955 |
| 95 | 95 | 5.17526e-4 |
| 96 | 96 | 0.714 |
| 97 | 97 | 0.42 |
| 98 | 98 | 0.01 |
| 99 | 99 | 0.183 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11740
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102285 granulosa cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002078 (meso-epithelial cell)
0000163 (endocrine cell)
0000174 (steroid hormone secreting cell)
0002174 (follicular cell of ovary)
0000255 (eukaryotic cell)
0000501 (granulosa cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102285 (granulosa cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)
