FF:10642-109A3: Difference between revisions

Latest revision as of 14:32, 3 June 2020

Name:	carcinosarcoma cell line:JHUCS-1
Species:	Human (Homo sapiens)
Library ID:	CNhs11747
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	uterus
dev stage	NA
sex	female
age	56
cell type	unclassifiable
cell line	JHUCS-1
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004911

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11747		CAGE		DRX007844		DRR008716

Accession ID Hg19

Library id		BAM		CTSS
CNhs11747		DRZ000141		DRZ001526

Accession ID Hg38

Library id		BAM		CTSS
CNhs11747		DRZ011491		DRZ012876

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.0481
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.298
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.572
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.067
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.177
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.0196
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0953
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.111
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0738
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.0267
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0695
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.0695
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.558
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.461
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.0695
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11747

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.84688e-6
MA0003.1	MA0003.1	0.127
MA0004.1	MA0004.1	0.968
MA0006.1	MA0006.1	0.284
MA0007.1	MA0007.1	0.594
MA0009.1	MA0009.1	0.604
MA0014.1	MA0014.1	0.794
MA0017.1	MA0017.1	0.0105
MA0018.2	MA0018.2	0.324
MA0019.1	MA0019.1	0.492
MA0024.1	MA0024.1	1.84184e-6
MA0025.1	MA0025.1	0.956
MA0027.1	MA0027.1	0.596
MA0028.1	MA0028.1	0.406
MA0029.1	MA0029.1	0.995
MA0030.1	MA0030.1	0.211
MA0031.1	MA0031.1	0.025
MA0035.2	MA0035.2	0.142
MA0038.1	MA0038.1	0.00301
MA0039.2	MA0039.2	0.365
MA0040.1	MA0040.1	0.183
MA0041.1	MA0041.1	0.331
MA0042.1	MA0042.1	0.422
MA0043.1	MA0043.1	0.718
MA0046.1	MA0046.1	0.0784
MA0047.2	MA0047.2	0.00276
MA0048.1	MA0048.1	0.497
MA0050.1	MA0050.1	1.00426e-4
MA0051.1	MA0051.1	0.0269
MA0052.1	MA0052.1	0.00777
MA0055.1	MA0055.1	0.747
MA0057.1	MA0057.1	0.224
MA0058.1	MA0058.1	0.874
MA0059.1	MA0059.1	0.494
MA0060.1	MA0060.1	9.63325e-9
MA0061.1	MA0061.1	0.0121
MA0062.2	MA0062.2	0.929
MA0065.2	MA0065.2	0.00224
MA0066.1	MA0066.1	0.0352
MA0067.1	MA0067.1	0.92
MA0068.1	MA0068.1	0.932
MA0069.1	MA0069.1	0.944
MA0070.1	MA0070.1	0.0415
MA0071.1	MA0071.1	0.551
MA0072.1	MA0072.1	0.528
MA0073.1	MA0073.1	0.559
MA0074.1	MA0074.1	0.184
MA0076.1	MA0076.1	0.119
MA0077.1	MA0077.1	0.273
MA0078.1	MA0078.1	0.527
MA0079.2	MA0079.2	0.665
MA0080.2	MA0080.2	7.176e-14
MA0081.1	MA0081.1	0.0522
MA0083.1	MA0083.1	0.0631
MA0084.1	MA0084.1	0.337
MA0087.1	MA0087.1	0.124
MA0088.1	MA0088.1	0.815
MA0090.1	MA0090.1	0.0137
MA0091.1	MA0091.1	0.613
MA0092.1	MA0092.1	0.199
MA0093.1	MA0093.1	0.933
MA0099.2	MA0099.2	7.05528e-21
MA0100.1	MA0100.1	0.221
MA0101.1	MA0101.1	0.0714
MA0102.2	MA0102.2	0.01
MA0103.1	MA0103.1	0.256
MA0104.2	MA0104.2	0.682
MA0105.1	MA0105.1	0.00576
MA0106.1	MA0106.1	0.15
MA0107.1	MA0107.1	0.0227
MA0108.2	MA0108.2	0.111
MA0111.1	MA0111.1	0.584
MA0112.2	MA0112.2	7.71818e-5
MA0113.1	MA0113.1	0.0715
MA0114.1	MA0114.1	0.0377
MA0115.1	MA0115.1	0.529
MA0116.1	MA0116.1	0.0122
MA0117.1	MA0117.1	0.815
MA0119.1	MA0119.1	0.0744
MA0122.1	MA0122.1	0.182
MA0124.1	MA0124.1	0.383
MA0125.1	MA0125.1	0.788
MA0131.1	MA0131.1	0.399
MA0135.1	MA0135.1	0.286
MA0136.1	MA0136.1	4.75598e-13
MA0137.2	MA0137.2	0.00888
MA0138.2	MA0138.2	0.94
MA0139.1	MA0139.1	0.0591
MA0140.1	MA0140.1	0.0582
MA0141.1	MA0141.1	0.0466
MA0142.1	MA0142.1	0.578
MA0143.1	MA0143.1	0.438
MA0144.1	MA0144.1	0.00303
MA0145.1	MA0145.1	0.0601
MA0146.1	MA0146.1	0.103
MA0147.1	MA0147.1	0.912
MA0148.1	MA0148.1	0.01
MA0149.1	MA0149.1	0.0213
MA0150.1	MA0150.1	7.92747e-5
MA0152.1	MA0152.1	0.983
MA0153.1	MA0153.1	0.209
MA0154.1	MA0154.1	0.00684
MA0155.1	MA0155.1	0.306
MA0156.1	MA0156.1	1.8093e-5
MA0157.1	MA0157.1	0.0134
MA0159.1	MA0159.1	0.0109
MA0160.1	MA0160.1	0.0869
MA0162.1	MA0162.1	0.227
MA0163.1	MA0163.1	9.09081e-5
MA0164.1	MA0164.1	0.773
MA0258.1	MA0258.1	0.00827
MA0259.1	MA0259.1	0.629

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11747

Novel motif	Logo	P-value
1	1	0.202
10	10	0.188
100	100	0.951
101	101	0.889
102	102	0.592
103	103	0.066
104	104	0.357
105	105	0.148
106	106	0.0137
107	107	0.125
108	108	0.593
109	109	0.0314
11	11	0.0996
110	110	0.386
111	111	0.833
112	112	0.0482
113	113	0.36
114	114	0.0151
115	115	0.824
116	116	0.626
117	117	0.164
118	118	0.431
119	119	0.167
12	12	0.321
120	120	0.309
121	121	0.905
122	122	0.75
123	123	0.695
124	124	0.733
125	125	0.912
126	126	0.172
127	127	0.102
128	128	0.0549
129	129	0.2
13	13	0.313
130	130	0.652
131	131	0.277
132	132	0.9
133	133	0.265
134	134	0.62
135	135	0.0691
136	136	0.859
137	137	0.191
138	138	0.334
139	139	0.046
14	14	0.529
140	140	0.76
141	141	0.5
142	142	0.557
143	143	0.00381
144	144	0.943
145	145	0.282
146	146	0.785
147	147	0.773
148	148	0.0324
149	149	0.0248
15	15	0.169
150	150	0.549
151	151	0.375
152	152	0.0253
153	153	0.799
154	154	0.912
155	155	0.832
156	156	0.784
157	157	0.654
158	158	0.941
159	159	0.017
16	16	0.204
160	160	0.272
161	161	0.767
162	162	0.604
163	163	0.929
164	164	0.434
165	165	0.174
166	166	0.825
167	167	0.724
168	168	0.304
169	169	0.0164
17	17	0.114
18	18	0.433
19	19	0.158
2	2	0.342
20	20	0.78
21	21	0.796
22	22	0.132
23	23	0.00656
24	24	0.188
25	25	0.45
26	26	0.32
27	27	0.119
28	28	0.927
29	29	0.368
3	3	0.086
30	30	0.466
31	31	0.579
32	32	0.0331
33	33	0.453
34	34	0.473
35	35	0.46
36	36	0.192
37	37	0.0331
38	38	0.308
39	39	0.235
4	4	0.937
40	40	0.229
41	41	0.105
42	42	0.295
43	43	0.133
44	44	0.403
45	45	0.373
46	46	0.263
47	47	0.344
48	48	0.288
49	49	0.228
5	5	0.0841
50	50	0.443
51	51	0.319
52	52	0.288
53	53	0.449
54	54	0.185
55	55	0.0111
56	56	0.464
57	57	0.578
58	58	0.186
59	59	0.0317
6	6	0.745
60	60	0.0598
61	61	0.352
62	62	0.0553
63	63	0.131
64	64	0.726
65	65	0.137
66	66	0.645
67	67	0.471
68	68	0.789
69	69	0.523
7	7	0.223
70	70	0.024
71	71	0.143
72	72	0.138
73	73	0.0292
74	74	0.38
75	75	0.0984
76	76	0.865
77	77	0.0622
78	78	0.174
79	79	0.324
8	8	0.227
80	80	0.129
81	81	0.577
82	82	0.0499
83	83	0.0935
84	84	0.766
85	85	0.00805
86	86	0.266
87	87	0.391
88	88	0.939
89	89	0.0899
9	9	0.148
90	90	0.314
91	91	0.16
92	92	0.0407
93	93	0.761
94	94	0.141
95	95	0.0702
96	96	0.0638
97	97	0.784
98	98	0.32
99	99	0.447

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11747

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100197 carcinosarcoma cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
1115 (sarcoma)
154 (mixed cell type cancer)
4236 (carcinosarcoma)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100400 (sarcoma cell line sample)
0101120 (epithelial cell line sample)
0100197 (carcinosarcoma cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00004911
+|accession_numbers=CAGE;DRX007844;DRR008716;DRZ000141;DRZ001526;DRZ011491;DRZ012876
 |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000012,CL:0000063,CL:0000066,CL:0000004,CL:0000255
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
 |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:1115,DOID:154,DOID:4236
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0100400,FF:0101120,FF:0100197
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr4:81118647..81118666,+!p1@PRDM8!2.41!336.49!PRDM8;;chr2:182545234..182545252,-!p1@NEUROD1!1.99!96.54!NEUROD1;;chr20:20348740..20348757,+!p1@INSM1!1.90!77.61!INSM1;;chr11:31832658..31832681,-!p1@PAX6!1.88!75.01!PAX6;;chr13:72441315..72441454,-!p1@DACH1!1.79!119.11!DACH1;;chr1:3569072..3569093,+!p1@TP73!1.61!39.93!TP73;;chr1:2461692..2461710,-!p1@HES5!1.57!35.77!HES5;;chr1:197886461..197886558,+!p1@LHX9!1.53!32.99!LHX9;;chr8:80679993..80680011,-!p1@HEY1!1.51!44.45!HEY1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.45!27.43!HOXC5;;chr11:31832862..31832884,-!p2@PAX6!1.44!26.74!PAX6;;chr2:162272785..162272836,+!p1@TBR1!1.43!25.70!TBR1;;chr7:27213893..27213954,-!p1@HOXA10!1.42!25.18!HOXA10;;chr7:27205136..27205164,-!p1@HOXA9!1.42!25.00!HOXA9;;chr4:81105027..81105039,+!p3@PRDM8!1.41!28.47!PRDM8;;chr17:37764128..37764258,-!p1@NEUROD2!1.39!23.79!NEUROD2;;chr2:162272889..162272915,+!p2@TBR1!1.39!23.61!TBR1;;chr13:72441074..72441172,-!p2@DACH1!1.38!23.09!DACH1;;chr11:31832807..31832823,-!p4@PAX6!1.38!22.92!PAX6;;chr9:16728047..16728061,-!p8@BNC2!1.37!22.40!BNC2;;chr9:126774018..126774055,+!p1@LHX2!1.35!21.18!LHX2;;chr11:31832610..31832639,-!p5@PAX6!1.34!21.01!PAX6;;chr11:31832687..31832704,-!p6@PAX6!1.32!19.79!PAX6;;chr8:106330656..106330684,+!p1@ZFPM2!1.28!46.36!ZFPM2;;chr5:176738887..176738934,-!p1@MXD3!1.27!114.94!MXD3;;chr5:158526917..158526932,-!p1@EBF1!1.26!42.89!EBF1;;chr1:23857325..23857416,-!p2@E2F2!1.25!19.45!E2F2;;chr12:55413751..55413765,+!p1@NEUROD4!1.23!15.97!NEUROD4;;chr11:31832581..31832601,-!p7@PAX6!1.22!15.63!PAX6;;chr17:53342311..53342400,+!p1@HLF!1.21!17.54!HLF;;chr17:46622440..46622477,-!p5@HOXB2!1.21!16.84!HOXB2;;chr6:19837592..19837621,+!p1@ID4!1.20!89.94!ID4;;chr22:19748231..19748317,+!p1@TBX1!1.20!14.93!TBX1;;chr1:40105299..40105326,-!p1@HEYL!1.20!14.76!HEYL;;chr1:935398..935465,-!p2@HES4!1.19!29.86!HES4;;chr18:55102598..55102623,+!p1@ONECUT2!1.19!14.41!ONECUT2;;chr12:54393880..54393962,+!p1@HOXC9!1.18!14.06!HOXC9;;chr15:76629123..76629151,+!p1@ISL2!1.16!14.93!ISL2;;chr5:158527104..158527135,-!p4@EBF1!1.16!13.54!EBF1;;chr7:156803329..156803362,-!p1@MNX1!1.16!13.54!MNX1;;chr11:63684602..63684664,-!p1@RCOR2!1.15!25.87!RCOR2;;chr6:10412392..10412409,-!p4@TFAP2A!1.15!15.11!TFAP2A;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.14!12.67!POU3F3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.14!12.67!ZBED1;;chr2:166326200..166326216,+!p1@CSRNP3!1.12!17.88!CSRNP3;;chr18:55102628..55102646,+!p2@ONECUT2!1.12!12.33!ONECUT2;;chr19:38720294..38720348,-!p1@DPF1!1.11!14.76!DPF1;;chr20:32274150..32274166,-!p2@E2F1!1.10!21.70!E2F1;;chr1:160336851..160336868,+!p1@NHLH1!1.08!10.94!NHLH1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.08!10.94!RUNX1T1;;chr2:100721881..100721904,-!p6@AFF3!1.07!10.76!AFF3;;chr12:24102576..24102623,-!p2@SOX5!1.07!10.76!SOX5;;chr1:23857698..23857733,-!p1@E2F2!1.06!19.27!E2F2;;chr7:27224795..27224840,-!p2@HOXA11!1.05!10.24!HOXA11;;chr8:53166899..53166914,-!p3@ST18!1.04!9.90!ST18;;chr6:10412600..10412637,-!p1@TFAP2A!1.03!16.32!TFAP2A;;chr7:27224842..27224872,-!p1@HOXA11!1.03!9.72!HOXA11;;chr13:79177703..79177729,-!p2@POU4F1!1.03!9.72!POU4F1;;chr9:96717629..96717644,-!p1@BARX1!1.03!9.72!BARX1;;chr5:158526459..158526481,-!p2@EBF1!1.02!12.67!EBF1;;chr9:126773880..126773895,+!p2@LHX2!1.02!9.38!LHX2;;chr19:50432453..50432468,+!p1@ATF5!1.01!527.82!ATF5;;chr8:106330696..106330719,+!p2@ZFPM2!1.01!11.98!ZFPM2;;chr4:81105091..81105107,+!p9@PRDM8!1.00!9.03!PRDM8;;chr2:239148671..239148686,-!p1@HES6!0.98!31.95!HES6;;chr5:134369905..134369972,-!p1@PITX1!0.98!13.37!PITX1;;chr5:150284532..150284549,-!p1@ZNF300!0.97!17.54!ZNF300;;chr15:37390850..37390909,-!p3@MEIS2!0.97!16.67!MEIS2;;chr3:40547564..40547616,+!p1@ZNF620!0.97!11.81!ZNF620;;chr8:93107451..93107468,-!p2@RUNX1T1!0.97!8.33!RUNX1T1;;chr20:32274179..32274213,-!p1@E2F1!0.96!55.04!E2F1;;chr1:3569101..3569115,+!p2@TP73!0.96!8.16!TP73;;chr9:114287433..114287513,+!p1@ZNF483!0.95!21.01!ZNF483;;chr8:93074848..93074871,-!p3@RUNX1T1!0.95!7.99!RUNX1T1;;chr12:85673977..85674015,+!p1@ALX1!0.95!7.99!ALX1;;chr2:157189180..157189290,-!p1@NR4A2!0.94!42.02!NR4A2;;chr6:20402102..20402152,+!p1@E2F3!0.94!32.64!E2F3;;chr8:116681409..116681431,-!p2@TRPS1!0.93!21.01!TRPS1;;chr19:20188776..20188826,+!p1@ZNF90!0.93!20.66!ZNF90;;chr9:14313893..14313908,-!p7@NFIB!0.93!10.94!NFIB;;chr9:16870659..16870675,-!p2@BNC2!0.93!9.38!BNC2;;chr9:16727978..16728010,-!p6@BNC2!0.93!7.47!BNC2;;chr1:119530493..119530572,-!p1@TBX15!0.93!7.47!TBX15;;chr1:216896752..216896778,-!p1@ESRRG!0.92!7.29!ESRRG;;chr1:3569135..3569150,+!p3@TP73!0.92!7.29!TP73;;chr20:62795799..62795819,+!p1@MYT1!0.92!7.29!MYT1;;chr20:62795834..62795878,+!p2@MYT1!0.92!7.29!MYT1;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!0.92!7.29!MEF2B;;chr14:38064429..38064486,-!p1@FOXA1!0.92!7.29!FOXA1;;chr9:16871214..16871260,-!p11@BNC2!0.92!7.29!BNC2;;chr5:172662197..172662216,-!p1@NKX2-5!0.91!7.12!NKX2-5;;chr2:177001290..177001315,+!p1@HOXD3!0.91!7.12!HOXD3;;chr2:182545296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@@ Line 35: / Line 40: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/carcinosarcoma%2520cell%2520line%253aJHUCS-1.CNhs11747.10642-109A3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/carcinosarcoma%2520cell%2520line%253aJHUCS-1.CNhs11747.10642-109A3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/carcinosarcoma%2520cell%2520line%253aJHUCS-1.CNhs11747.10642-109A3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/carcinosarcoma%2520cell%2520line%253aJHUCS-1.CNhs11747.10642-109A3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/carcinosarcoma%2520cell%2520line%253aJHUCS-1.CNhs11747.10642-109A3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10642-109A3
-|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0100197
+|is_a=EFO:0002091;;FF:0000210;;FF:0100197
+|is_obsolete=
+|library_id=CNhs11747
+|library_id_phase_based=2:CNhs11747
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10642
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10642
 |name=carcinosarcoma cell line:JHUCS-1
 |namespace=FANTOM5
@@ Line 42: / Line 59: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11747,LSID819,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=109
 |rna_catalog_number=
@@ Line 57: / Line 77: @@
 |rna_weight_ug=198.87
 |sample_age=56
+|sample_category=cell lines
 |sample_cell_catalog=RCB1547
 |sample_cell_line=JHUCS-1
@@ Line 69: / Line 90: @@
 |sample_ethnicity=J
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.72706273270296e-301!GO:0043226;organelle;3.95652684825746e-265!GO:0043229;intracellular organelle;1.80161971317419e-264!GO:0043231;intracellular membrane-bound organelle;4.81736951356693e-262!GO:0043227;membrane-bound organelle;6.16732826027855e-262!GO:0044422;organelle part;1.61826630284776e-161!GO:0044446;intracellular organelle part;7.13693896892507e-160!GO:0005737;cytoplasm;2.84006931264934e-158!GO:0005634;nucleus;1.42785141752175e-145!GO:0032991;macromolecular complex;5.00227352957525e-114!GO:0044444;cytoplasmic part;8.8984196153859e-108!GO:0043170;macromolecule metabolic process;4.16337128323235e-107!GO:0044238;primary metabolic process;4.33266763731108e-106!GO:0044237;cellular metabolic process;4.94287699650362e-105!GO:0044428;nuclear part;1.85754137512589e-98!GO:0030529;ribonucleoprotein complex;5.12016284137934e-93!GO:0003723;RNA binding;5.21046169395201e-86!GO:0043233;organelle lumen;5.03931616170549e-85!GO:0031974;membrane-enclosed lumen;5.03931616170549e-85!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.00953290243822e-84!GO:0043283;biopolymer metabolic process;1.49676436588161e-81!GO:0010467;gene expression;2.83659757159582e-77!GO:0005515;protein binding;6.9656594038953e-71!GO:0006396;RNA processing;1.90743972885679e-61!GO:0003676;nucleic acid binding;2.48052728356497e-60!GO:0005739;mitochondrion;1.26393266087484e-59!GO:0043234;protein complex;1.79966546427218e-58!GO:0016043;cellular component organization and biogenesis;7.02552069086334e-58!GO:0031981;nuclear lumen;8.99001666208181e-58!GO:0005840;ribosome;8.37818654970721e-51!GO:0016071;mRNA metabolic process;3.65848220429743e-50!GO:0016070;RNA metabolic process;9.55868389141947e-50!GO:0006259;DNA metabolic process;1.16422869748225e-46!GO:0008380;RNA splicing;8.23864538947139e-46!GO:0006996;organelle organization and biogenesis;3.54037149511777e-44!GO:0015031;protein transport;3.99074751829052e-44!GO:0031090;organelle membrane;8.85149273501222e-44!GO:0033036;macromolecule localization;9.58601038457532e-44!GO:0006397;mRNA processing;3.57361161997821e-43!GO:0006412;translation;4.26472118869702e-43!GO:0003735;structural constituent of ribosome;5.25269377709663e-43!GO:0043228;non-membrane-bound organelle;9.58083440105471e-43!GO:0043232;intracellular non-membrane-bound organelle;9.58083440105471e-43!GO:0031967;organelle envelope;1.41485552794207e-41!GO:0044429;mitochondrial part;1.75886404598097e-41!GO:0031975;envelope;1.7646482185918e-41!GO:0046907;intracellular transport;4.66691676179793e-40!GO:0045184;establishment of protein localization;3.9420297233871e-39!GO:0008104;protein localization;5.1638557336542e-39!GO:0033279;ribosomal subunit;1.01329395968545e-38!GO:0007049;cell cycle;1.39882623485645e-37!GO:0005654;nucleoplasm;2.03940259893448e-36!GO:0019538;protein metabolic process;1.9784019190973e-34!GO:0000166;nucleotide binding;3.62660928277751e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.62660928277751e-33!GO:0005681;spliceosome;4.31035934693858e-32!GO:0044249;cellular biosynthetic process;9.16426306944047e-31!GO:0009059;macromolecule biosynthetic process;1.21751035214712e-30!GO:0065003;macromolecular complex assembly;2.50661662313146e-30!GO:0006886;intracellular protein transport;2.80187307358974e-30!GO:0044267;cellular protein metabolic process;3.6030763217739e-30!GO:0009058;biosynthetic process;3.6030763217739e-30!GO:0051649;establishment of cellular localization;3.6030763217739e-30!GO:0006974;response to DNA damage stimulus;4.09018556020802e-30!GO:0044260;cellular macromolecule metabolic process;5.08604561969242e-30!GO:0051641;cellular localization;8.7099715840159e-30!GO:0005829;cytosol;2.41372800859479e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.01157583260849e-28!GO:0044451;nucleoplasm part;1.1700312168951e-28!GO:0022402;cell cycle process;6.79716629929041e-28!GO:0019866;organelle inner membrane;7.34578482864847e-28!GO:0005740;mitochondrial envelope;4.16391708264097e-27!GO:0006281;DNA repair;5.29048569340569e-27!GO:0022607;cellular component assembly;4.34015855626947e-26!GO:0000278;mitotic cell cycle;4.88498088146856e-26!GO:0005694;chromosome;6.29806639633289e-26!GO:0031966;mitochondrial membrane;6.90374022159733e-26!GO:0005743;mitochondrial inner membrane;4.64551256720876e-25!GO:0006260;DNA replication;3.77497690401009e-24!GO:0017111;nucleoside-triphosphatase activity;4.78829947599844e-23!GO:0044455;mitochondrial membrane part;1.17010991209623e-22!GO:0016462;pyrophosphatase activity;1.1731231727275e-22!GO:0032553;ribonucleotide binding;1.56881920675335e-22!GO:0032555;purine ribonucleotide binding;1.56881920675335e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.00104056495383e-22!GO:0006119;oxidative phosphorylation;2.95657105773274e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;3.26698122705419e-22!GO:0044445;cytosolic part;5.51188319414859e-22!GO:0022403;cell cycle phase;7.49689587384362e-22!GO:0000087;M phase of mitotic cell cycle;8.74584434927126e-22!GO:0044427;chromosomal part;1.08385537709488e-21!GO:0007067;mitosis;2.14908798246798e-21!GO:0051276;chromosome organization and biogenesis;2.82435010681086e-21!GO:0017076;purine nucleotide binding;4.337617925904e-21!GO:0005730;nucleolus;5.58416827015254e-21!GO:0015934;large ribosomal subunit;3.57721183121979e-20!GO:0016874;ligase activity;7.20036391729468e-20!GO:0051301;cell division;7.20036391729468e-20!GO:0015935;small ribosomal subunit;1.46526873675918e-19!GO:0022618;protein-RNA complex assembly;1.5246108339282e-19!GO:0006457;protein folding;1.9123020966872e-19!GO:0000279;M phase;5.93688578643523e-19!GO:0006512;ubiquitin cycle;6.02499014492912e-19!GO:0005524;ATP binding;6.86212865504442e-19!GO:0009719;response to endogenous stimulus;7.27061970738938e-19!GO:0032559;adenyl ribonucleotide binding;1.31067243854696e-18!GO:0012505;endomembrane system;6.7300948332165e-18!GO:0005746;mitochondrial respiratory chain;1.90169783004449e-17!GO:0015630;microtubule cytoskeleton;2.42002332477563e-17!GO:0006511;ubiquitin-dependent protein catabolic process;3.95593619839856e-17!GO:0008135;translation factor activity, nucleic acid binding;4.49019582526833e-17!GO:0031980;mitochondrial lumen;4.68195388965734e-17!GO:0005759;mitochondrial matrix;4.68195388965734e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;4.97113867946079e-17!GO:0030554;adenyl nucleotide binding;5.25415285720986e-17!GO:0019941;modification-dependent protein catabolic process;6.67937390778107e-17!GO:0043632;modification-dependent macromolecule catabolic process;6.67937390778107e-17!GO:0019222;regulation of metabolic process;1.13007069769564e-16!GO:0044257;cellular protein catabolic process;1.77960834415324e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;1.88795548036452e-16!GO:0000375;RNA splicing, via transesterification reactions;1.88795548036452e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.88795548036452e-16!GO:0044265;cellular macromolecule catabolic process;2.59850371035045e-16!GO:0031965;nuclear membrane;5.14407258961754e-16!GO:0008134;transcription factor binding;5.92345663872854e-16!GO:0050794;regulation of cellular process;7.42715203613203e-16!GO:0050136;NADH dehydrogenase (quinone) activity;8.00151517340052e-16!GO:0003954;NADH dehydrogenase activity;8.00151517340052e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.00151517340052e-16!GO:0006350;transcription;1.03567316743017e-15!GO:0044453;nuclear membrane part;1.04994199670881e-15!GO:0005635;nuclear envelope;1.16098917452411e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.26571819218759e-15!GO:0006325;establishment and/or maintenance of chromatin architecture;2.48652767776319e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.60371577998733e-15!GO:0016887;ATPase activity;5.71789878586671e-15!GO:0006605;protein targeting;6.07723792302537e-15!GO:0006323;DNA packaging;1.10515565087581e-14!GO:0042254;ribosome biogenesis and assembly;1.91924049461583e-14!GO:0051082;unfolded protein binding;2.3627739636002e-14!GO:0016604;nuclear body;2.6626152493312e-14!GO:0031323;regulation of cellular metabolic process;3.06990906319568e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.93196182455582e-14!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.93196182455582e-14!GO:0043285;biopolymer catabolic process;4.09515287717492e-14!GO:0005643;nuclear pore;4.35700605431344e-14!GO:0005761;mitochondrial ribosome;5.16232499837329e-14!GO:0000313;organellar ribosome;5.16232499837329e-14!GO:0048770;pigment granule;5.16232499837329e-14!GO:0042470;melanosome;5.16232499837329e-14!GO:0042623;ATPase activity, coupled;5.4832291643308e-14!GO:0004386;helicase activity;6.38266095440528e-14!GO:0000502;proteasome complex (sensu Eukaryota);9.07186756804109e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.0088750060688e-13!GO:0042773;ATP synthesis coupled electron transport;1.0088750060688e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.0088750060688e-13!GO:0045271;respiratory chain complex I;1.0088750060688e-13!GO:0005747;mitochondrial respiratory chain complex I;1.0088750060688e-13!GO:0032774;RNA biosynthetic process;1.02842897127246e-13!GO:0006351;transcription, DNA-dependent;1.77652921801959e-13!GO:0016568;chromatin modification;2.51801964206616e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.40121570642319e-13!GO:0006403;RNA localization;4.35255269766484e-13!GO:0006261;DNA-dependent DNA replication;4.50043812691871e-13!GO:0009057;macromolecule catabolic process;4.90692721750037e-13!GO:0051726;regulation of cell cycle;4.9514800550236e-13!GO:0000074;regulation of progression through cell cycle;6.20058940684518e-13!GO:0030163;protein catabolic process;6.20058940684518e-13!GO:0010468;regulation of gene expression;8.22008149461593e-13!GO:0003743;translation initiation factor activity;9.53374360186853e-13!GO:0050657;nucleic acid transport;1.09248967464051e-12!GO:0051236;establishment of RNA localization;1.09248967464051e-12!GO:0050658;RNA transport;1.09248967464051e-12!GO:0006366;transcription from RNA polymerase II promoter;1.16580782732741e-12!GO:0048193;Golgi vesicle transport;1.45374954370135e-12!GO:0005783;endoplasmic reticulum;1.73765902468186e-12!GO:0006913;nucleocytoplasmic transport;2.22770272581814e-12!GO:0008565;protein transporter activity;2.22924284651315e-12!GO:0016607;nuclear speck;2.99898684858626e-12!GO:0051169;nuclear transport;5.56823963290262e-12!GO:0005794;Golgi apparatus;6.36870079321439e-12!GO:0016192;vesicle-mediated transport;7.21517234897953e-12!GO:0045449;regulation of transcription;8.49531331245453e-12!GO:0051186;cofactor metabolic process;1.80394139581199e-11!GO:0006413;translational initiation;2.05208520831704e-11!GO:0008026;ATP-dependent helicase activity;2.06018539920472e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.11207598430594e-11!GO:0000775;chromosome, pericentric region;2.75283670049934e-11!GO:0043412;biopolymer modification;3.20396563904777e-11!GO:0003677;DNA binding;4.16970393736381e-11!GO:0044248;cellular catabolic process;4.29399338933249e-11!GO:0046930;pore complex;7.11874157446471e-11!GO:0006355;regulation of transcription, DNA-dependent;8.16194051292766e-11!GO:0051028;mRNA transport;9.205612643717e-11!GO:0050789;regulation of biological process;9.66195914069804e-11!GO:0006399;tRNA metabolic process;9.79457395600733e-11!GO:0065002;intracellular protein transport across a membrane;1.0979083105601e-10!GO:0044432;endoplasmic reticulum part;1.22334468671888e-10!GO:0006446;regulation of translational initiation;1.48396390418473e-10!GO:0043566;structure-specific DNA binding;3.40584558343079e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.64275627494918e-10!GO:0003712;transcription cofactor activity;3.98797822266404e-10!GO:0030532;small nuclear ribonucleoprotein complex;7.61379652363394e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.0297355127856e-10!GO:0003697;single-stranded DNA binding;9.24098354768501e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.0264189775109e-09!GO:0006732;coenzyme metabolic process;1.25989935265963e-09!GO:0006364;rRNA processing;1.46777138006328e-09!GO:0008639;small protein conjugating enzyme activity;1.58176672628343e-09!GO:0006464;protein modification process;2.33674468694046e-09!GO:0009259;ribonucleotide metabolic process;2.94218899668472e-09!GO:0004842;ubiquitin-protein ligase activity;3.52499828370767e-09!GO:0000785;chromatin;3.63706330927688e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.65624428056889e-09!GO:0004812;aminoacyl-tRNA ligase activity;3.65624428056889e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.65624428056889e-09!GO:0006163;purine nucleotide metabolic process;3.68545508854323e-09!GO:0016072;rRNA metabolic process;4.16644901498295e-09!GO:0006333;chromatin assembly or disassembly;4.41886647229523e-09!GO:0005819;spindle;4.80719154679021e-09!GO:0005874;microtubule;5.79638330066433e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.83829958005998e-09!GO:0017038;protein import;7.97480659113283e-09!GO:0005813;centrosome;9.03855054994799e-09!GO:0043038;amino acid activation;1.33394592472984e-08!GO:0006418;tRNA aminoacylation for protein translation;1.33394592472984e-08!GO:0043039;tRNA aminoacylation;1.33394592472984e-08!GO:0043687;post-translational protein modification;1.58211305215407e-08!GO:0019787;small conjugating protein ligase activity;1.63624294013522e-08!GO:0019829;cation-transporting ATPase activity;1.69513800892947e-08!GO:0045333;cellular respiration;2.08121287691189e-08!GO:0006461;protein complex assembly;2.08812385627212e-08!GO:0005793;ER-Golgi intermediate compartment;2.26132490274035e-08!GO:0009150;purine ribonucleotide metabolic process;2.37969596803802e-08!GO:0005815;microtubule organizing center;2.62545903957701e-08!GO:0005667;transcription factor complex;2.69776145880487e-08!GO:0006164;purine nucleotide biosynthetic process;2.92193135388538e-08!GO:0007017;microtubule-based process;3.11062045664238e-08!GO:0009060;aerobic respiration;3.36868895268023e-08!GO:0000245;spliceosome assembly;3.82219040627902e-08!GO:0016881;acid-amino acid ligase activity;5.44705524719144e-08!GO:0009260;ribonucleotide biosynthetic process;5.53480553527355e-08!GO:0015986;ATP synthesis coupled proton transport;5.82729644389047e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.82729644389047e-08!GO:0005657;replication fork;6.13310806385265e-08!GO:0065004;protein-DNA complex assembly;6.39314642324268e-08!GO:0009141;nucleoside triphosphate metabolic process;7.23193147276973e-08!GO:0009199;ribonucleoside triphosphate metabolic process;7.696465066523e-08!GO:0000075;cell cycle checkpoint;1.12220696208118e-07!GO:0016363;nuclear matrix;1.28716865387303e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.35947321328648e-07!GO:0009055;electron carrier activity;1.46717318668341e-07!GO:0007051;spindle organization and biogenesis;1.63261864892698e-07!GO:0016779;nucleotidyltransferase activity;1.64607535689289e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.72113924143643e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.85228813968043e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.86318365718426e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.86318365718426e-07!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.91255303708567e-07!GO:0003682;chromatin binding;2.07733385027564e-07!GO:0008094;DNA-dependent ATPase activity;2.2838170199908e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.32295003774226e-07!GO:0032446;protein modification by small protein conjugation;2.39430903977491e-07!GO:0048475;coated membrane;2.48531914897182e-07!GO:0030117;membrane coat;2.48531914897182e-07!GO:0051188;cofactor biosynthetic process;2.65237172934383e-07!GO:0046034;ATP metabolic process;2.65237172934383e-07!GO:0009142;nucleoside triphosphate biosynthetic process;3.07704735004658e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.07704735004658e-07!GO:0005789;endoplasmic reticulum membrane;3.74726938211758e-07!GO:0051329;interphase of mitotic cell cycle;3.87938031741415e-07!GO:0016564;transcription repressor activity;4.285745679421e-07!GO:0031988;membrane-bound vesicle;4.98461579281029e-07!GO:0007005;mitochondrion organization and biogenesis;5.78851763947879e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.13977249466326e-07!GO:0016567;protein ubiquitination;6.23987589158436e-07!GO:0006099;tricarboxylic acid cycle;6.4916073837309e-07!GO:0046356;acetyl-CoA catabolic process;6.4916073837309e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.19845496529525e-07!GO:0031982;vesicle;7.65869743525089e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.681141724874e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.681141724874e-07!GO:0016023;cytoplasmic membrane-bound vesicle;7.73009146652061e-07!GO:0045259;proton-transporting ATP synthase complex;8.6805262439561e-07!GO:0006754;ATP biosynthetic process;8.81821136291982e-07!GO:0006753;nucleoside phosphate metabolic process;8.81821136291982e-07!GO:0043623;cellular protein complex assembly;9.21360883833288e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.10909734697512e-06!GO:0051325;interphase;1.14147934041413e-06!GO:0031410;cytoplasmic vesicle;1.21856177581803e-06!GO:0007010;cytoskeleton organization and biogenesis;1.26295707752845e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.33663490375132e-06!GO:0006084;acetyl-CoA metabolic process;1.3910398285068e-06!GO:0007059;chromosome segregation;1.85274136151781e-06!GO:0009109;coenzyme catabolic process;2.06747090192705e-06!GO:0044431;Golgi apparatus part;2.1545705430076e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.25740147595393e-06!GO:0045786;negative regulation of progression through cell cycle;2.34151460715655e-06!GO:0000776;kinetochore;2.56607383596936e-06!GO:0051170;nuclear import;2.67415279218748e-06!GO:0003729;mRNA binding;2.71235565267954e-06!GO:0005525;GTP binding;2.90854336341299e-06!GO:0015631;tubulin binding;3.00274394995055e-06!GO:0009117;nucleotide metabolic process;3.01679785965706e-06!GO:0031324;negative regulation of cellular metabolic process;3.01679785965706e-06!GO:0006606;protein import into nucleus;3.01679785965706e-06!GO:0009108;coenzyme biosynthetic process;3.89035725590344e-06!GO:0016740;transferase activity;4.4027128461778e-06!GO:0006752;group transfer coenzyme metabolic process;4.48660835785482e-06!GO:0000151;ubiquitin ligase complex;5.14930164281923e-06!GO:0030120;vesicle coat;5.16845963248955e-06!GO:0030662;coated vesicle membrane;5.16845963248955e-06!GO:0000226;microtubule cytoskeleton organization and biogenesis;6.23119913447454e-06!GO:0003690;double-stranded DNA binding;6.69615238269655e-06!GO:0003924;GTPase activity;6.90140709783539e-06!GO:0048523;negative regulation of cellular process;6.92325376862106e-06!GO:0045045;secretory pathway;6.9845005232036e-06!GO:0003724;RNA helicase activity;7.03280319177877e-06!GO:0006613;cotranslational protein targeting to membrane;8.13810110019746e-06!GO:0003714;transcription corepressor activity;9.73840969301533e-06!GO:0051187;cofactor catabolic process;9.80263138016095e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.06304742566607e-05!GO:0008270;zinc ion binding;1.06360078525271e-05!GO:0005798;Golgi-associated vesicle;1.06378371967833e-05!GO:0003684;damaged DNA binding;1.12670490573789e-05!GO:0005788;endoplasmic reticulum lumen;1.21211250305681e-05!GO:0003899;DNA-directed RNA polymerase activity;1.27572186673157e-05!GO:0009892;negative regulation of metabolic process;1.35737928151677e-05!GO:0009056;catabolic process;1.58247512399163e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.29046386716264e-05!GO:0016481;negative regulation of transcription;3.11638268755967e-05!GO:0000059;protein import into nucleus, docking;3.47616057164729e-05!GO:0008017;microtubule binding;3.94151307318476e-05!GO:0003713;transcription coactivator activity;4.15805466032096e-05!GO:0051052;regulation of DNA metabolic process;4.38595330122333e-05!GO:0005762;mitochondrial large ribosomal subunit;4.5112454450381e-05!GO:0000315;organellar large ribosomal subunit;4.5112454450381e-05!GO:0051168;nuclear export;4.57329292350959e-05!GO:0051427;hormone receptor binding;4.61012669200527e-05!GO:0016563;transcription activator activity;4.63690319051952e-05!GO:0004298;threonine endopeptidase activity;5.35875481341525e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.78389699662404e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;6.1725437313958e-05!GO:0032561;guanyl ribonucleotide binding;6.26997680562291e-05!GO:0019001;guanyl nucleotide binding;6.26997680562291e-05!GO:0043021;ribonucleoprotein binding;6.80697845805722e-05!GO:0006302;double-strand break repair;8.28851546955048e-05!GO:0006793;phosphorus metabolic process;9.04097218057488e-05!GO:0006796;phosphate metabolic process;9.04097218057488e-05!GO:0065007;biological regulation;9.73235553564809e-05!GO:0035257;nuclear hormone receptor binding;0.000101800549378063!GO:0000314;organellar small ribosomal subunit;0.000104963123755316!GO:0005763;mitochondrial small ribosomal subunit;0.000104963123755316!GO:0005768;endosome;0.000109811357501254!GO:0006839;mitochondrial transport;0.000109811357501254!GO:0003678;DNA helicase activity;0.000118712063014741!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000122353217841065!GO:0016310;phosphorylation;0.000135991726447534!GO:0006414;translational elongation;0.000140713465960592!GO:0005876;spindle microtubule;0.000146400794703696!GO:0048471;perinuclear region of cytoplasm;0.000154511284384872!GO:0000228;nuclear chromosome;0.000157029618263549!GO:0000139;Golgi membrane;0.000161883078101437!GO:0016859;cis-trans isomerase activity;0.000164709165822648!GO:0006270;DNA replication initiation;0.000173962489509479!GO:0031072;heat shock protein binding;0.000173962489509479!GO:0007052;mitotic spindle organization and biogenesis;0.000179618342155095!GO:0008186;RNA-dependent ATPase activity;0.000186681433645283!GO:0008654;phospholipid biosynthetic process;0.000188799290353003!GO:0016741;transferase activity, transferring one-carbon groups;0.000191850491768832!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000194630764239815!GO:0032508;DNA duplex unwinding;0.000202420369637451!GO:0032392;DNA geometric change;0.000202420369637451!GO:0030867;rough endoplasmic reticulum membrane;0.000215222127292939!GO:0005875;microtubule associated complex;0.000233740352672665!GO:0031497;chromatin assembly;0.000242458127770022!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00025624849677205!GO:0006284;base-excision repair;0.00025624849677205!GO:0008168;methyltransferase activity;0.000262660033016065!GO:0006612;protein targeting to membrane;0.000263949316199985!GO:0007006;mitochondrial membrane organization and biogenesis;0.000264949838225297!GO:0003746;translation elongation factor activity;0.000266591990912611!GO:0043681;protein import into mitochondrion;0.000273024128492135!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000275842420035558!GO:0006383;transcription from RNA polymerase III promoter;0.000291415640767746!GO:0006352;transcription initiation;0.000307528224239514!GO:0006310;DNA recombination;0.000318186922637933!GO:0007093;mitotic cell cycle checkpoint;0.000342754450649476!GO:0048519;negative regulation of biological process;0.000389165336729313!GO:0009165;nucleotide biosynthetic process;0.000413168100257925!GO:0016853;isomerase activity;0.000421536816769254!GO:0006334;nucleosome assembly;0.000426481042769427!GO:0005637;nuclear inner membrane;0.000438521676035866!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000463353235629027!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00047096457697076!GO:0006338;chromatin remodeling;0.000471656938757016!GO:0044440;endosomal part;0.000474209139563752!GO:0010008;endosome membrane;0.000474209139563752!GO:0046914;transition metal ion binding;0.00049724689082811!GO:0006268;DNA unwinding during replication;0.000509105679738383!GO:0006402;mRNA catabolic process;0.000525074373626259!GO:0004004;ATP-dependent RNA helicase activity;0.000569167145836635!GO:0015980;energy derivation by oxidation of organic compounds;0.000597290544382421!GO:0031124;mRNA 3'-end processing;0.000641020394489056!GO:0044452;nucleolar part;0.000659801226301945!GO:0016251;general RNA polymerase II transcription factor activity;0.000663042217248906!GO:0007088;regulation of mitosis;0.000702020859914489!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000715162424085512!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000715162424085512!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000715162424085512!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000718267309947778!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00072713716301006!GO:0000922;spindle pole;0.000824185381366021!GO:0051920;peroxiredoxin activity;0.000856889422147079!GO:0005684;U2-dependent spliceosome;0.000902158669129561!GO:0008033;tRNA processing;0.000929591314743386!GO:0012501;programmed cell death;0.00110880904589688!GO:0000049;tRNA binding;0.00113086268230261!GO:0019899;enzyme binding;0.0011485686190737!GO:0051087;chaperone binding;0.00119515979088616!GO:0004674;protein serine/threonine kinase activity;0.00120561751808866!GO:0004527;exonuclease activity;0.00124039182132819!GO:0003702;RNA polymerase II transcription factor activity;0.00126974872160943!GO:0006915;apoptosis;0.00129131738877725!GO:0006275;regulation of DNA replication;0.00137984989916614!GO:0000082;G1/S transition of mitotic cell cycle;0.00138487355983656!GO:0005770;late endosome;0.00139466002917773!GO:0000792;heterochromatin;0.00140258264745727!GO:0051539;4 iron, 4 sulfur cluster binding;0.00146778106967604!GO:0045454;cell redox homeostasis;0.00153735541792133!GO:0051789;response to protein stimulus;0.00158925023672041!GO:0006986;response to unfolded protein;0.00158925023672041!GO:0043596;nuclear replication fork;0.00159776076911132!GO:0048500;signal recognition particle;0.00160226937748904!GO:0030118;clathrin coat;0.00166110380353535!GO:0005048;signal sequence binding;0.00189367345318883!GO:0008312;7S RNA binding;0.00192432381672867!GO:0000910;cytokinesis;0.00204672980320804!GO:0035258;steroid hormone receptor binding;0.00207897376206947!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00210527346181799!GO:0015399;primary active transmembrane transporter activity;0.00210527346181799!GO:0046474;glycerophospholipid biosynthetic process;0.00213198263798336!GO:0051246;regulation of protein metabolic process;0.0021534045787026!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00216749701943275!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00216749701943275!GO:0031252;leading edge;0.0022607849725549!GO:0006626;protein targeting to mitochondrion;0.00228864253539355!GO:0043284;biopolymer biosynthetic process;0.00235201570880468!GO:0030880;RNA polymerase complex;0.00251753926358472!GO:0030135;coated vesicle;0.00253789266706875!GO:0008276;protein methyltransferase activity;0.00259181541032757!GO:0003711;transcription elongation regulator activity;0.00274440188621879!GO:0006401;RNA catabolic process;0.00278985705806407!GO:0006891;intra-Golgi vesicle-mediated transport;0.00279038405510826!GO:0000819;sister chromatid segregation;0.00279432467084975!GO:0051252;regulation of RNA metabolic process;0.00287194462737229!GO:0044454;nuclear chromosome part;0.00289193927055286!GO:0032200;telomere organization and biogenesis;0.00295133946255713!GO:0000723;telomere maintenance;0.00295133946255713!GO:0031123;RNA 3'-end processing;0.00295133946255713!GO:0006405;RNA export from nucleus;0.00298659546603818!GO:0045892;negative regulation of transcription, DNA-dependent;0.00299774473046135!GO:0030176;integral to endoplasmic reticulum membrane;0.00303156806036404!GO:0006378;mRNA polyadenylation;0.00312688650565863!GO:0042393;histone binding;0.0031869959957894!GO:0005885;Arp2/3 protein complex;0.00324074405705762!GO:0051540;metal cluster binding;0.00331128238827354!GO:0051536;iron-sulfur cluster binding;0.00331128238827354!GO:0030134;ER to Golgi transport vesicle;0.00338030963316353!GO:0005669;transcription factor TFIID complex;0.00343973887258827!GO:0008139;nuclear localization sequence binding;0.0035029434157876!GO:0016272;prefoldin complex;0.00356625651970596!GO:0000070;mitotic sister chromatid segregation;0.0035769858899195!GO:0030137;COPI-coated vesicle;0.0037587492699263!GO:0005905;coated pit;0.00378236277020507!GO:0032940;secretion by cell;0.00379038654080218!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0037950115891574!GO:0045047;protein targeting to ER;0.0037950115891574!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00379635260280822!GO:0004576;oligosaccharyl transferase activity;0.00387888483659524!GO:0008022;protein C-terminus binding;0.00397217139850917!GO:0006818;hydrogen transport;0.00397451768160062!GO:0008219;cell death;0.00424019679862966!GO:0016265;death;0.00424019679862966!GO:0046489;phosphoinositide biosynthetic process;0.0042692496693892!GO:0006595;polyamine metabolic process;0.00438097397460242!GO:0006289;nucleotide-excision repair;0.0046165351926859!GO:0005769;early endosome;0.00468739105419242!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00475176889417299!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00484309180259041!GO:0015992;proton transport;0.00498669108732283!GO:0000339;RNA cap binding;0.00503359566433759!GO:0008287;protein serine/threonine phosphatase complex;0.00503580061768494!GO:0030658;transport vesicle membrane;0.00515738612195538!GO:0005663;DNA replication factor C complex;0.00521132156158128!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00538987439403418!GO:0000428;DNA-directed RNA polymerase complex;0.00538987439403418!GO:0006376;mRNA splice site selection;0.00541085216854366!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00541085216854366!GO:0043601;nuclear replisome;0.00541277181207879!GO:0030894;replisome;0.00541277181207879!GO:0030127;COPII vesicle coat;0.00564534791995285!GO:0012507;ER to Golgi transport vesicle membrane;0.00564534791995285!GO:0033116;ER-Golgi intermediate compartment membrane;0.00565848000573217!GO:0030521;androgen receptor signaling pathway;0.00569235815262337!GO:0008250;oligosaccharyl transferase complex;0.0057959333848662!GO:0007050;cell cycle arrest;0.00600760414147299!GO:0016787;hydrolase activity;0.00605379748171071!GO:0044450;microtubule organizing center part;0.00606577208605646!GO:0006611;protein export from nucleus;0.00606577208605646!GO:0004003;ATP-dependent DNA helicase activity;0.00643124944917701!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00683514206956818!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00718481602573858!GO:0019843;rRNA binding;0.00725628954253589!GO:0030663;COPI coated vesicle membrane;0.00739069050628987!GO:0030126;COPI vesicle coat;0.00739069050628987!GO:0040029;regulation of gene expression, epigenetic;0.00739341869212726!GO:0046467;membrane lipid biosynthetic process;0.00782104608420135!GO:0009116;nucleoside metabolic process;0.00784628659182424!GO:0006144;purine base metabolic process;0.00786885646594802!GO:0005869;dynactin complex;0.00789680349223542!GO:0000781;chromosome, telomeric region;0.00805327410471115!GO:0001558;regulation of cell growth;0.00817304542197743!GO:0016584;nucleosome positioning;0.00822533883919668!GO:0008361;regulation of cell size;0.0082849684997631!GO:0030133;transport vesicle;0.00830954615085367!GO:0030660;Golgi-associated vesicle membrane;0.00889125897350619!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00900717965106469!GO:0016044;membrane organization and biogenesis;0.00900717965106469!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00908798443988352!GO:0006607;NLS-bearing substrate import into nucleus;0.00917544311127326!GO:0016585;chromatin remodeling complex;0.00929834203820266!GO:0016049;cell growth;0.00968401738652867!GO:0031570;DNA integrity checkpoint;0.00971940424983487!GO:0005832;chaperonin-containing T-complex;0.00982634694712498!GO:0043022;ribosome binding;0.0100164732776078!GO:0000725;recombinational repair;0.0102680376017962!GO:0000724;double-strand break repair via homologous recombination;0.0102680376017962!GO:0007018;microtubule-based movement;0.0110487281255129!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0111669861487944!GO:0007264;small GTPase mediated signal transduction;0.0114919038524431!GO:0019783;small conjugating protein-specific protease activity;0.0118717998742436!GO:0048487;beta-tubulin binding;0.0119148258527483!GO:0030027;lamellipodium;0.0119210713185328!GO:0007004;telomere maintenance via telomerase;0.0125693126076646!GO:0045792;negative regulation of cell size;0.0126732591857848!GO:0005791;rough endoplasmic reticulum;0.0127109445963618!GO:0009112;nucleobase metabolic process;0.01310214822643!GO:0051053;negative regulation of DNA metabolic process;0.0134166543247078!GO:0032259;methylation;0.0136624808525592!GO:0004843;ubiquitin-specific protease activity;0.0137187136408806!GO:0008180;signalosome;0.0137657789182081!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.01400736119508!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0141662715654094!GO:0005741;mitochondrial outer membrane;0.014521545710489!GO:0031577;spindle checkpoint;0.0147052474331898!GO:0006367;transcription initiation from RNA polymerase II promoter;0.014760662564034!GO:0051287;NAD binding;0.014874906178207!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0148987701524684!GO:0015002;heme-copper terminal oxidase activity;0.0148987701524684!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0148987701524684!GO:0004129;cytochrome-c oxidase activity;0.0148987701524684!GO:0030308;negative regulation of cell growth;0.0151390396089035!GO:0005758;mitochondrial intermembrane space;0.0156964601908419!GO:0031970;organelle envelope lumen;0.0158957827604494!GO:0008092;cytoskeletal protein binding;0.0169107818377603!GO:0043492;ATPase activity, coupled to movement of substances;0.016987530728192!GO:0030518;steroid hormone receptor signaling pathway;0.0170705386971529!GO:0004518;nuclease activity;0.0171411115894122!GO:0043130;ubiquitin binding;0.0171922289324258!GO:0032182;small conjugating protein binding;0.0171922289324258!GO:0031968;organelle outer membrane;0.0179466960336581!GO:0030433;ER-associated protein catabolic process;0.0181265854936581!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0181265854936581!GO:0030384;phosphoinositide metabolic process;0.018169986497418!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.018169986497418!GO:0000209;protein polyubiquitination;0.0181941895508492!GO:0043631;RNA polyadenylation;0.0184235133979352!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0185795662222852!GO:0004221;ubiquitin thiolesterase activity;0.0186095179590152!GO:0030119;AP-type membrane coat adaptor complex;0.0189462168141497!GO:0006301;postreplication repair;0.0189462168141497!GO:0000178;exosome (RNase complex);0.0189659351241536!GO:0019867;outer membrane;0.0190629980704587!GO:0008097;5S rRNA binding;0.0190692936255066!GO:0043414;biopolymer methylation;0.0191035078455778!GO:0043488;regulation of mRNA stability;0.0191902247982168!GO:0043487;regulation of RNA stability;0.0191902247982168!GO:0004523;ribonuclease H activity;0.0192527522651387!GO:0033170;DNA-protein loading ATPase activity;0.0192796958422091!GO:0003689;DNA clamp loader activity;0.0192796958422091!GO:0016197;endosome transport;0.020113276408767!GO:0050681;androgen receptor binding;0.0205228687704082!GO:0006916;anti-apoptosis;0.0205228687704082!GO:0051128;regulation of cellular component organization and biogenesis;0.0207920893993551!GO:0042770;DNA damage response, signal transduction;0.0210144270100167!GO:0003887;DNA-directed DNA polymerase activity;0.0217267861513442!GO:0042054;histone methyltransferase activity;0.0219948492727146!GO:0006892;post-Golgi vesicle-mediated transport;0.0226010728325394!GO:0017134;fibroblast growth factor binding;0.0226764600364987!GO:0000118;histone deacetylase complex;0.0230825353002241!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.023574568509355!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0237369682356005!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0240022935096793!GO:0010257;NADH dehydrogenase complex assembly;0.0240022935096793!GO:0033108;mitochondrial respiratory chain complex assembly;0.0240022935096793!GO:0030131;clathrin adaptor complex;0.0240432920541492!GO:0006505;GPI anchor metabolic process;0.0241330311932762!GO:0005652;nuclear lamina;0.0243244552089619!GO:0018196;peptidyl-asparagine modification;0.0245805019950722!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0245805019950722!GO:0030132;clathrin coat of coated pit;0.0246266318530253!GO:0006220;pyrimidine nucleotide metabolic process;0.0247041987111532!GO:0000793;condensed chromosome;0.0250789727868902!GO:0022406;membrane docking;0.0255787416160586!GO:0048278;vesicle docking;0.0255787416160586!GO:0016279;protein-lysine N-methyltransferase activity;0.0255787416160586!GO:0018024;histone-lysine N-methyltransferase activity;0.0255787416160586!GO:0016278;lysine N-methyltransferase activity;0.0255787416160586!GO:0035267;NuA4 histone acetyltransferase complex;0.0258198987394097!GO:0007040;lysosome organization and biogenesis;0.0258198987394097!GO:0005665;DNA-directed RNA polymerase II, core complex;0.026071587422178!GO:0008601;protein phosphatase type 2A regulator activity;0.0263317632149519!GO:0005881;cytoplasmic microtubule;0.0263645719758861!GO:0009303;rRNA transcription;0.0265595543243977!GO:0016790;thiolester hydrolase activity;0.0272923737118579!GO:0008536;Ran GTPase binding;0.0275445760372478!GO:0007021;tubulin folding;0.027701613657869!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0284000786129984!GO:0031901;early endosome membrane;0.0287213169187558!GO:0051059;NF-kappaB binding;0.0287213169187558!GO:0004722;protein serine/threonine phosphatase activity;0.0287213169187558!GO:0000152;nuclear ubiquitin ligase complex;0.0287213169187558!GO:0009066;aspartate family amino acid metabolic process;0.0290620510264014!GO:0005784;translocon complex;0.0303766332380394!GO:0043189;H4/H2A histone acetyltransferase complex;0.0305275761476201!GO:0006506;GPI anchor biosynthetic process;0.0307074047476078!GO:0003756;protein disulfide isomerase activity;0.0308649768630658!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0308649768630658!GO:0051656;establishment of organelle localization;0.0314947820696304!GO:0022890;inorganic cation transmembrane transporter activity;0.0326871919371531!GO:0000790;nuclear chromatin;0.0331785691597864!GO:0043433;negative regulation of transcription factor activity;0.0331785691597864!GO:0000287;magnesium ion binding;0.0340739622936066!GO:0046112;nucleobase biosynthetic process;0.0343723888954272!GO:0008156;negative regulation of DNA replication;0.0347145730645527!GO:0051320;S phase;0.0349478191950428!GO:0006278;RNA-dependent DNA replication;0.0349533646513187!GO:0046982;protein heterodimerization activity;0.0350696927574587!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0351274495353661!GO:0030508;thiol-disulfide exchange intermediate activity;0.0351754637551364!GO:0007034;vacuolar transport;0.0356368685299479!GO:0000123;histone acetyltransferase complex;0.0359207619734759!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0362423133622325!GO:0050178;phenylpyruvate tautomerase activity;0.0367277976758972!GO:0006650;glycerophospholipid metabolic process;0.0368961488834066!GO:0046483;heterocycle metabolic process;0.0369257401552056!GO:0000077;DNA damage checkpoint;0.0369569836777919!GO:0030032;lamellipodium biogenesis;0.0369813529303098!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.037181290678503!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0385280816581536!GO:0046426;negative regulation of JAK-STAT cascade;0.0385889426445548!GO:0008143;poly(A) binding;0.0390871755194427!GO:0030496;midbody;0.0392972820416321!GO:0005862;muscle thin filament tropomyosin;0.0400014931236833!GO:0019206;nucleoside kinase activity;0.0404360466550934!GO:0000930;gamma-tubulin complex;0.040667383734665!GO:0043624;cellular protein complex disassembly;0.0407792404460618!GO:0030911;TPR domain binding;0.0415557542410855!GO:0000805;X chromosome;0.0425130415706911!GO:0001740;Barr body;0.0425130415706911!GO:0006497;protein amino acid lipidation;0.0427366399295378!GO:0006984;ER-nuclear signaling pathway;0.0431155579414956!GO:0032984;macromolecular complex disassembly;0.0431155579414956!GO:0005658;alpha DNA polymerase:primase complex;0.0434115095906523!GO:0000086;G2/M transition of mitotic cell cycle;0.0436976393369498!GO:0042158;lipoprotein biosynthetic process;0.0438960684799215!GO:0006904;vesicle docking during exocytosis;0.0445472946400101!GO:0045502;dynein binding;0.0452280497247356!GO:0042981;regulation of apoptosis;0.0452958805883891!GO:0033673;negative regulation of kinase activity;0.0456452705581631!GO:0006469;negative regulation of protein kinase activity;0.0456452705581631!GO:0043069;negative regulation of programmed cell death;0.0456842715573927!GO:0007346;regulation of progression through mitotic cell cycle;0.0462924062155569!GO:0000084;S phase of mitotic cell cycle;0.0469008769249865!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0477919740025974!GO:0047485;protein N-terminus binding;0.0481779374934513!GO:0043067;regulation of programmed cell death;0.0486310569073817!GO:0042769;DNA damage response, detection of DNA damage;0.0493129794431309!GO:0006564;L-serine biosynthetic process;0.0494831287633947!GO:0005773;vacuole;0.04957177329974
 |sample_id=10642
 |sample_note=
@@ Line 76: / Line 98: @@
 |sample_tissue=uterus
 |top_motifs=TFDP1:2.68285363043;BREu{core}:2.67183040206;NKX2-1,4:2.4511143936;POU1F1:2.32842384761;AHR_ARNT_ARNT2:2.1430088239;TEF:2.08615662281;RBPJ:2.0792583225;E2F1..5:2.00640563271;POU6F1:1.96068056979;PAX4:1.92147560743;NKX6-1,2:1.73815610782;PAX3,7:1.468556054;POU3F1..4:1.4656915574;DBP:1.46184939271;PITX1..3:1.41028300962;NFY{A,B,C}:1.39591075555;NKX2-3_NKX2-5:1.39303520961;YY1:1.37093849353;ZNF143:1.27509860856;FOXM1:1.24730656156;ZNF384:1.23952110213;EVI1:1.23266702446;PBX1:1.20080792948;NRF1:1.19909799902;ALX1:1.17796488353;MTE{core}:1.1672394774;CDX1,2,4:1.14627928694;ARID5B:1.14556161082;PRRX1,2:1.07759025112;TFAP2B:1.06344874119;CDC5L:1.04476703861;RREB1:1.02640719071;ZFP161:1.02528790606;MED-1{core}:1.010024316;NKX3-1:1.00481834433;AIRE:0.96878645707;CUX2:0.967210934935;PATZ1:0.966048055653;GFI1:0.958135858569;TOPORS:0.950858715773;FOXP1:0.902073250524;POU5F1:0.885075656413;MZF1:0.877556764756;GATA4:0.863230295524;PAX8:0.859756130273;HOX{A4,D4}:0.854232997824;STAT1,3:0.817828510961;CRX:0.777344955227;ZBTB16:0.770786441105;ATF4:0.76872960717;PDX1:0.764317105438;ZBTB6:0.749073679144;NR1H4:0.748199800266;ELK1,4_GABP{A,B1}:0.744190998004;IKZF2:0.736317869477;RFX1:0.721779383918;FOXD3:0.709529257344;ONECUT1,2:0.701803678463;MYB:0.673538446892;ZIC1..3:0.603250294888;FOXP3:0.588611359212;PRDM1:0.576940030369;KLF4:0.574649373104;REST:0.572187364406;UFEwm:0.52867836745;ESRRA:0.522071692449;TAL1_TCF{3,4,12}:0.489610912466;PAX5:0.434462343072;GTF2I:0.419442609511;LHX3,4:0.415408753418;NFE2L1:0.412228353696;LEF1_TCF7_TCF7L1,2:0.406183283921;SOX{8,9,10}:0.399457101636;HOXA9_MEIS1:0.377498526615;XCPE1{core}:0.375888084324;RFX2..5_RFXANK_RFXAP:0.37558813429;MAZ:0.360423233077;SOX17:0.343554928123;OCT4_SOX2{dimer}:0.320145768409;FOXA2:0.311615981736;HIC1:0.311244397757;ATF5_CREB3:0.309247124352;EGR1..3:0.264836372328;MYFfamily:0.230202498436;NKX3-2:0.21060965;MTF1:0.185474895037;HOX{A6,A7,B6,B7}:0.181026612532;HMGA1,2:0.178005403733;GZF1:0.170285944575;PAX1,9:0.158876215684;CREB1:0.142120259107;HOX{A5,B5}:0.137889684188;BPTF:0.121557544351;SP1:0.117917986594;HAND1,2:0.104933643988;PAX6:0.0819093583911;TGIF1:0.0664311707919;NANOG:0.0434935444909;SREBF1,2:0.0218004199312;GCM1,2:0.00620277836421;NR3C1:-0.00346670830734;PPARG:-0.00989205351553;ADNP_IRX_SIX_ZHX:-0.0212532612267;ZNF423:-0.0280501835423;NFIX:-0.0331792180181;NKX2-2,8:-0.0527018155366;GFI1B:-0.0642477434658;NR6A1:-0.0950894659112;HBP1_HMGB_SSRP1_UBTF:-0.0986565548018;HIF1A:-0.112153047587;SOX2:-0.153535235818;HSF1,2:-0.169129054521;HNF1A:-0.201737265528;FOXN1:-0.203431538583;IKZF1:-0.203438675667;SOX5:-0.213370495536;FOXL1:-0.226893637801;XBP1:-0.241524262031;MYBL2:-0.247250314779;HLF:-0.260545448872;EN1,2:-0.261099435975;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.264096857558;VSX1,2:-0.268009226872;SNAI1..3:-0.271951057154;ATF2:-0.275539561668;LMO2:-0.309737549885;RORA:-0.329623165236;RXR{A,B,G}:-0.336374138941;STAT5{A,B}:-0.341351196692;CEBPA,B_DDIT3:-0.36862612829;NHLH1,2:-0.376024305682;NFIL3:-0.383928196578;GTF2A1,2:-0.396885977613;ALX4:-0.411076674068;MEF2{A,B,C,D}:-0.421823041544;FOXQ1:-0.429956486167;NANOG{mouse}:-0.4315108919;ZEB1:-0.433650687246;DMAP1_NCOR{1,2}_SMARC:-0.439683370269;GATA6:-0.442590789484;HNF4A_NR2F1,2:-0.474797183945;MYOD1:-0.47659296718;FOSL2:-0.488326129099;JUN:-0.523517776348;FOX{I1,J2}:-0.527884523015;MAFB:-0.571682424711;NFKB1_REL_RELA:-0.581541416043;ATF6:-0.593122604958;SPI1:-0.597648405962;NR5A1,2:-0.599007660391;bHLH_family:-0.604750680671;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.621007188636;AR:-0.6230625423;IRF7:-0.628809923876;POU2F1..3:-0.647997364975;IRF1,2:-0.654518984162;FOX{F1,F2,J1}:-0.65667970249;SPIB:-0.697463258238;TEAD1:-0.704662718696;SRF:-0.708022787033;FOS_FOS{B,L1}_JUN{B,D}:-0.725334843798;T:-0.741769616361;RUNX1..3:-0.748032736821;TLX1..3_NFIC{dimer}:-0.787872356219;SMAD1..7,9:-0.795586479042;BACH2:-0.795882782292;TP53:-0.83053265376;ZNF238:-0.854995420348;ELF1,2,4:-0.876237461081;NFE2L2:-0.887732593159;FOX{D1,D2}:-0.888399700454;TFAP2{A,C}:-0.899771141253;RXRA_VDR{dimer}:-0.911367019938;NFATC1..3:-0.949141635333;ESR1:-0.954872627661;NFE2:-0.980203775964;FOXO1,3,4:-0.994353669706;TFAP4:-0.994702458808;TBP:-1.01347696183;TLX2:-1.09847202954;ZNF148:-1.18726990348;ETS1,2:-1.21520282952;STAT2,4,6:-1.22043351943;TFCP2:-1.24399411548;PAX2:-1.26073046047;GLI1..3:-1.30232731491;HES1:-1.35286602091;EP300:-1.40981152803;HMX1:-1.48541983794;TBX4,5:-1.5194940659;EBF1:-1.6140482545;SPZ1:-2.00220964163
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10642-109A3;search_select_hide=table117:FF:10642-109A3
 }}

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FF:10642-109A3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:32, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0