FF:10684-109E9: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005282 | |||
|accession_numbers=CAGE;DRX007959;DRR008831;DRZ000256;DRZ001641;DRZ011606;DRZ012991 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!2.31!226.27!PRRX1;;chr1:170633348..170633399,+!p2@PRRX1!1.63!56.34!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!1.62!41.06!PRRX1;;chr12:115122318..115122331,-!p2@TBX3!1.53!32.77!TBX3;;chr11:65667884..65667895,-!p2@FOSL1!1.50!114.51!FOSL1;;chr1:170632477..170632506,+!p6@PRRX1!1.50!30.56!PRRX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.50!30.38!HOXC5;;chr2:19558373..19558392,-!p1@OSR1!1.49!80.45!OSR1;;chr1:170632250..170632277,+!p7@PRRX1!1.46!28.17!PRRX1;;chr12:66218598..66218645,+!p2@HMGA2!1.43!117.09!HMGA2;;chr6:1312325..1312340,+!p1@FOXQ1!1.42!40.87!FOXQ1;;chr12:115121770..115121781,-!p4@TBX3!1.39!23.75!TBX3;;chr12:66218255..66218304,+!p3@HMGA2!1.35!56.70!HMGA2;;chr6:1389789..1389821,+!p1@FOXF2!1.35!29.09!FOXF2;;chr12:115121802..115121814,-!p5@TBX3!1.33!20.62!TBX3;;chr1:158985493..158985535,+!p4@IFI16!1.32!29.83!IFI16;;chr7:27205106..27205134,-!p2@HOXA9!1.32!20.07!HOXA9;;chr8:25902876..25902936,-!p1@EBF2!1.32!20.07!EBF2;;chr11:65667846..65667868,-!p1@FOSL1!1.31!500.03!FOSL1;;chr7:27196267..27196311,-!p1@HOXA7!1.31!19.52!HOXA7;;chr2:239756671..239756732,+!p1@TWIST2!1.30!59.28!TWIST2;;chr1:170632959..170632987,+!p4@PRRX1!1.26!18.96!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!1.26!17.31!PRRX1;;chr2:102091566..102091581,-!p1@RFX8!1.25!16.94!RFX8;;chr5:321810..321877,+!p1@AHRR!1.24!51.92!AHRR;;chr1:170632439..170632465,+!p11@PRRX1!1.24!16.39!PRRX1;;chr1:170633262..170633285,+!p3@PRRX1!1.21!17.31!PRRX1;;chr7:14029283..14029311,-!p1@ETV1!1.19!76.22!ETV1;;chr1:170632762..170632786,+!p13@PRRX1!1.19!14.54!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!1.18!13.99!PRRX1;;chr2:239756739..239756755,+!p2@TWIST2!1.16!23.20!TWIST2;;chr6:45296048..45296082,+!p1@RUNX2!1.16!15.46!RUNX2;;chr19:31840130..31840160,-!p2@TSHZ3!1.15!20.25!TSHZ3;;chr12:115122303..115122314,-!p6@TBX3!1.15!13.07!TBX3;;chr8:77593474..77593612,+!p1@ZFHX4!1.14!53.39!ZFHX4;;chr7:27205136..27205164,-!p1@HOXA9!1.13!12.52!HOXA9;;chr7:19157248..19157268,-!p1@TWIST1!1.12!34.06!TWIST1;;chr2:176969228..176969260,+!p1@HOXD11!1.10!11.60!HOXD11;;chr8:72756063..72756125,-!p1@MSC!1.09!23.01!MSC;;chr6:1389989..1390019,+!p2@FOXF2!1.09!11.41!FOXF2;;chr1:170632310..170632321,+!p15@PRRX1!1.09!11.41!PRRX1;;chr1:170632137..170632172,+!p10@PRRX1!1.09!11.23!PRRX1;;chr11:65686732..65686756,+!p2@DRAP1!1.08!46.39!DRAP1;;chr7:19157043..19157088,-!p2@TWIST1!1.08!27.80!TWIST1;;chr16:86600426..86600441,+!p1@FOXC2!1.07!26.51!FOXC2;;chr9:77112244..77112262,+!p1@RORB!1.07!12.15!RORB;;chr16:29819446..29819471,+!p9@MAZ!1.05!30.75!MAZ;;chr3:141121847..141121868,+!p5@ZBTB38!1.05!15.83!ZBTB38;;chr12:66218836..66218888,+!p1@HMGA2!1.04!93.89!HMGA2;;chr7:113726357..113726443,+!p1@FOXP2!1.04!17.31!FOXP2;;chr3:21792585..21792625,-!p2@ZNF385D!1.04!11.05!ZNF385D;;chr15:60884706..60884743,-!p1@RORA!1.03!51.18!RORA;;chr12:115122262..115122271,-!p7@TBX3!1.03!9.76!TBX3;;chr2:200322654..200322707,-!p2@SATB2!1.02!13.99!SATB2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.02!9.57!HOXC5;;chr7:27224842..27224872,-!p1@HOXA11!1.01!9.21!HOXA11;;chr5:133450365..133450444,+!p1@TCF7!1.00!41.61!TCF7;;chr8:72756267..72756296,-!p4@MSC!1.00!13.44!MSC;;chr1:170632115..170632136,+!p9@PRRX1!0.99!8.84!PRRX1;;chr3:21792682..21792720,-!p1@ZNF385D!0.97!8.28!ZNF385D;;chr19:13134457..13134462,+!p5@NFIX!0.96!14.91!NFIX;;chr7:27192185..27192209,-!p1@HOXA3!0.95!7.92!HOXA3;;chr21:36260295..36260310,-!p3@RUNX1!0.94!12.70!RUNX1;;chr2:172949484..172949522,+!p1@DLX1!0.94!7.73!DLX1;;chr8:72755987..72756002,-!p7@MSC!0.93!7.55!MSC;;chr12:66218573..66218596,+!p7@HMGA2!0.91!10.86!HMGA2;;chr16:29819403..29819442,+!p5@MAZ!0.90!60.57!MAZ;;chr12:26277956..26277980,-!p1@BHLHE41!0.89!25.41!BHLHE41;;chr8:72756023..72756055,-!p6@MSC!0.89!8.47!MSC;;chr3:21792631..21792665,-!p3@ZNF385D!0.89!6.81!ZNF385D;;chr1:170632647..170632659,+!p17@PRRX1!0.89!6.81!PRRX1;;chr18:22932080..22932170,-!p1@ZNF521!0.88!29.64!ZNF521;;chr12:66218212..66218244,+!p5@HMGA2!0.88!9.76!HMGA2;;chr12:115121962..115121987,-!p1@TBX3!0.87!56.89!TBX3;;chr11:46299199..46299233,+!p1@CREB3L1!0.87!35.16!CREB3L1;;chr19:13134772..13134822,+!p2@NFIX!0.87!9.76!NFIX;;chr8:72756637..72756664,-!p3@MSC!0.87!7.36!MSC;;chr3:157823517..157823562,-!p1@SHOX2!0.87!7.00!SHOX2;;chr7:15726243..15726293,-!p2@MEOX2!0.87!6.44!MEOX2;;chr12:54380404..54380433,+!p3@HOXC10!0.87!6.44!HOXC10;;chr6:34204921..34204939,+!p3@HMGA1!0.85!194.42!HMGA1;;chr14:24837368..24837401,+!p1@NFATC4!0.85!14.91!NFATC4;;chr19:35759824..35759891,+!p1@USF2!0.84!195.15!USF2;;chr12:52445218..52445237,+!p1@NR4A1!0.84!80.45!NR4A1;;chr17:45810594..45810608,+!p1@TBX21!0.84!5.89!TBX21;;chr2:102091144..102091183,-!p2@RFX8!0.84!5.89!RFX8;;chr2:176994408..176994492,+!p1@HOXD8!0.83!5.71!HOXD8;;chr3:147127142..147127168,+!p1@ZIC1!0.83!5.71!ZIC1;;chr10:64018918..64018936,+!p2@ZNF365!0.83!5.71!ZNF365;;chr5:137801160..137801176,+!p1@EGR1!0.82!596.14!EGR1;;chr17:38256822..38256851,-!p1@NR1D1!0.82!47.68!NR1D1;;chr16:86612320..86612394,+!p1@FOXL1!0.81!5.52!FOXL1;;chr12:66218904..66218913,+!p11@HMGA2!0.81!5.52!HMGA2;;chr17:59477233..59477263,+!p1@TBX2!0.80!17.67!TBX2;;chr18:3448455..3448480,+!p5@TGIF1!0.80!10.31!TGIF1;;chr7:27196217..27196246,-!p2@HOXA7!0.80!5.34!HOXA7;;chr7:27224795..27224840,-!p2@HOXA11!0.80!5.34!HOXA11;;chr8:77593750..77593757,+!p3@ZFHX4!0.79!5.15!ZFHX4;;chr1:170632325..170632339,+!p24@PRRX1!0.79!5.15!PRRX1;;chr12:27485823..27485868,+!p2@ARNTL2!0.78!22.28!ARNTL2;;chr12:66218003..66218018,+!p9@HMGA2!0.78!6.26!HMGA2;;chr1:59249645..59249656,-!p4@JUN!0.77!13.07!JUN;;chr12:66218183..66218209,+!p4@HMGA2!0.77!9.94!HMGA2;;chr12:27485762..27485776,+!p3@ARNTL2!0.76!13.62!ARNTL2;;chr15:60884747..60884774,-!p3@RORA!0.76!12.52!RORA;;chr7:14028488..14028516,-!p2@ETV1!0.76!5.34!ETV1;;chr16:86600870..86600921,+!p2@FOXC2!0.76!4.79!FOXC2;;chr2:19558327..19558334,-!p2@OSR1!0.76!4.79!OSR1;;chr11:65686952..65686975,+!p5@DRAP1!0.75!27.98!DRAP1;;chr7:17338324..17338341,+!p3@AHR!0.75!16.75!AHR;;chr7:14029312..14029325,-!p4@ETV1!0.75!5.89!ETV1;;chr2:176969179..176969226,+!p2@HOXD11!0.75!4.60!HOXD11;;chr3:141121820..141121838,+!p9@ZBTB38!0.75!4.60!ZBTB38;;chr3:21792790..21792824,-!p4@ZNF385D!0.75!4.60!ZNF385D;;chr17:46806067..46806097,-!p1@HOXB13!0.75!4.60!HOXB13;;chr1:170632867..170632878,+!p21@PRRX1!0.75!4.60!PRRX1;;chr1:23857698..23857733,-!p1@E2F2!0.74!8.65!E2F2;;chr12:2986275..2986363,-!p1@FOXM1!0.73!49.52!FOXM1;;chr6:106534230..106534254,+!p2@PRDM1!0.73!11.97!PRDM1;;chr5:158526917..158526932,-!p1@EBF1!0.73!11.78!EBF1;;chr12:54402745..54402788,+!p1@HOXC8!0.73!4.42!HOXC8;;chr2:119605214..119605230,-!p1@EN1!0.73!4.42!EN1;;chr17:59477403..59477414,+!p4@TBX2!0.73!4.42!TBX2;;chr7:27135591..27135658,-!p1@HOXA1!0.72!8.65!HOXA1;;chr12:66218378..66218401,+!p6@HMGA2!0.72!7.00!HMGA2;;chr8:72756213..72756243,-!p5@MSC!0.72!5.71!MSC;;chr1:119530493..119530572,-!p1@TBX15!0.72!4.23!TBX15;;chr1:170632414..170632421,+!p28@PRRX1!0.72!4.23!PRRX1;;chr9:77112225..77112238,+!p2@RORB!0.72!4.23!RORB;;chr20:32274179..32274213,-!p1@E2F1!0.70!30.01!E2F1;;chr11:65686802..65686818,+!p6@DRAP1!0.70!7.55!DRAP1;;chr16:29819558..29819572,+!p28@MAZ!0.70!4.05!MAZ;;chr1:170633194..170633205,+!p18@PRRX1!0.69!3.87!PRRX1;;chr7:27213893..27213954,-!p1@HOXA10!0.69!3.87!HOXA10;;chr8:72756380..72756427,-!p8@MSC!0.69!3.87!MSC;;chrY:2803415..2803468,+!p1@ZFY!0.69!3.87!ZFY;;chr19:23433144..23433204,-!p1@ZNF724P!0.68!19.15!ZNF724P;;chr1:158979872..158979898,+!p3@IFI16!0.68!13.07!IFI16;;chr19:31840313..31840380,-!p1@TSHZ3!0.68!10.68!TSHZ3;;chr2:71127699..71127744,+!p1@VAX2!0.68!8.47!VAX2;;chr12:26277929..26277955,-!p3@BHLHE41!0.68!5.71!BHLHE41;;chr1:158985469..158985489,+!p7@IFI16!0.68!4.60!IFI16;;chr5:137804484..137804498,+!p2@EGR1!0.67!16.57!EGR1;;chr9:16870710..16870763,-!p1@BNC2!0.67!6.81!BNC2;;chr11:6947720..6947812,+!p1@ZNF215!0.67!4.97!ZNF215;;chr12:54393880..54393962,+!p1@HOXC9!0.67!3.68!HOXC9;;chr12:66218923..66218934,+!p14@HMGA2!0.67!3.68!HMGA2;;chr16:67198633..67198671,+!p1@HSF4!0.67!3.68!HSF4;;chr19:31840278..31840300,-!p5@TSHZ3!0.67!3.68!TSHZ3;;chr12:96588143..96588185,+!p1@ELK3!0.66!51.18!ELK3;;chr17:46621937..46621966,-!p2@HOXB2!0.66!10.86!HOXB2;;chr2:172967621..172967637,-!p1@DLX2!0.66!10.68!DLX2;;chr2:185463247..185463263,+!p1@ZNF804A!0.66!6.81!ZNF804A;;chr8:72756667..72756736,-!p2@MSC!0.66!5.89!MSC;;chr4:26322267..26322334,+!p3@RBPJ!0.65!9.39!RBPJ;;chr11:65668011..65668020,-!p3@FOSL1!0.65!3.50!FOSL1;;chr12:77459306..77459365,-!p1@E2F7!0.64!49.71!E2F7;;chr5:72744594..72744609,-!p1@FOXD1!0.64!17.86!FOXD1;;chr3:114343768..114343822,-!p1@ZBTB20!0.64!17.12!ZBTB20;;chr6:106534192..106534224,+!p1@PRDM1!0.64!10.68!PRDM1;;chr7:137686552..137686564,-!p9@CREB3L2!0.64!5.34!CREB3L2;;chr5:137804405..137804444,+!p3@EGR1!0.64!4.23!EGR1;;chr21:47063625..47063658,+!p1@PCBP3!0.63!16.39!PCBP3;;chr9:109625401..109625458,+!p1@ZNF462!0.63!9.76!ZNF462;;chr2:200323414..200323455,-!p1@SATB2!0.63!7.73!SATB2;;chr2:45236540..45236577,-!p1@SIX2!0.63!3.31!SIX2;;chr2:74741569..74741620,+!p1@TLX2!0.63!3.31!TLX2;;chr2:85981107..85981120,+!p3@ATOH8!0.63!3.31!ATOH8;;chr19:46801639..46801699,+!p1@HIF3A!0.63!3.31!HIF3A;;chr21:36260980..36261011,-!p1@RUNX1!0.62!108.81!RUNX1;;chr8:49833978..49833996,-!p1@SNAI2!0.62!78.80!SNAI2;;chr3:71114066..71114114,-!p1@FOXP1!0.62!76.59!FOXP1;;chr5:88178983..88179012,-!p1@MEF2C!0.62!28.90!MEF2C;;chr1:164528445..164528459,+!p2@PBX1!0.62!11.41!PBX1;;chr9:102584262..102584276,+!p1@NR4A3!0.62!7.92!NR4A3;;chrY:21906594..21906622,-!p1@KDM5D!0.62!3.13!KDM5D;;chr1:170632583..170632590,+!p26@PRRX1!0.62!3.13!PRRX1;;chr7:17338266..17338282,+!p1@AHR!0.61!40.14!AHR;;chr17:41277372..41277418,-!p1@BRCA1!0.61!13.07!BRCA1;;chr5:134369905..134369972,-!p1@PITX1!0.61!5.15!PITX1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.61!3.31!GLIS1;;chr12:27485785..27485816,+!p1@ARNTL2!0.60!25.04!ARNTL2;;chr12:48298785..48298828,-!p1@VDR!0.60!18.78!VDR;;chr2:74730430..74730451,-!p1@LBX2!0.60!5.34!LBX2;;chr21:36260343..36260402,-!p6@RUNX1!0.60!5.15!RUNX1;;chr5:43067636..43067674,+!p6@ZNF131!0.60!4.23!ZNF131;;chr1:170632907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| |expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!2.31!226.27!PRRX1;;chr1:170633348..170633399,+!p2@PRRX1!1.63!56.34!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!1.62!41.06!PRRX1;;chr12:115122318..115122331,-!p2@TBX3!1.53!32.77!TBX3;;chr11:65667884..65667895,-!p2@FOSL1!1.50!114.51!FOSL1;;chr1:170632477..170632506,+!p6@PRRX1!1.50!30.56!PRRX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.50!30.38!HOXC5;;chr2:19558373..19558392,-!p1@OSR1!1.49!80.45!OSR1;;chr1:170632250..170632277,+!p7@PRRX1!1.46!28.17!PRRX1;;chr12:66218598..66218645,+!p2@HMGA2!1.43!117.09!HMGA2;;chr6:1312325..1312340,+!p1@FOXQ1!1.42!40.87!FOXQ1;;chr12:115121770..115121781,-!p4@TBX3!1.39!23.75!TBX3;;chr12:66218255..66218304,+!p3@HMGA2!1.35!56.70!HMGA2;;chr6:1389789..1389821,+!p1@FOXF2!1.35!29.09!FOXF2;;chr12:115121802..115121814,-!p5@TBX3!1.33!20.62!TBX3;;chr1:158985493..158985535,+!p4@IFI16!1.32!29.83!IFI16;;chr7:27205106..27205134,-!p2@HOXA9!1.32!20.07!HOXA9;;chr8:25902876..25902936,-!p1@EBF2!1.32!20.07!EBF2;;chr11:65667846..65667868,-!p1@FOSL1!1.31!500.03!FOSL1;;chr7:27196267..27196311,-!p1@HOXA7!1.31!19.52!HOXA7;;chr2:239756671..239756732,+!p1@TWIST2!1.30!59.28!TWIST2;;chr1:170632959..170632987,+!p4@PRRX1!1.26!18.96!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!1.26!17.31!PRRX1;;chr2:102091566..102091581,-!p1@RFX8!1.25!16.94!RFX8;;chr5:321810..321877,+!p1@AHRR!1.24!51.92!AHRR;;chr1:170632439..170632465,+!p11@PRRX1!1.24!16.39!PRRX1;;chr1:170633262..170633285,+!p3@PRRX1!1.21!17.31!PRRX1;;chr7:14029283..14029311,-!p1@ETV1!1.19!76.22!ETV1;;chr1:170632762..170632786,+!p13@PRRX1!1.19!14.54!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!1.18!13.99!PRRX1;;chr2:239756739..239756755,+!p2@TWIST2!1.16!23.20!TWIST2;;chr6:45296048..45296082,+!p1@RUNX2!1.16!15.46!RUNX2;;chr19:31840130..31840160,-!p2@TSHZ3!1.15!20.25!TSHZ3;;chr12:115122303..115122314,-!p6@TBX3!1.15!13.07!TBX3;;chr8:77593474..77593612,+!p1@ZFHX4!1.14!53.39!ZFHX4;;chr7:27205136..27205164,-!p1@HOXA9!1.13!12.52!HOXA9;;chr7:19157248..19157268,-!p1@TWIST1!1.12!34.06!TWIST1;;chr2:176969228..176969260,+!p1@HOXD11!1.10!11.60!HOXD11;;chr8:72756063..72756125,-!p1@MSC!1.09!23.01!MSC;;chr6:1389989..1390019,+!p2@FOXF2!1.09!11.41!FOXF2;;chr1:170632310..170632321,+!p15@PRRX1!1.09!11.41!PRRX1;;chr1:170632137..170632172,+!p10@PRRX1!1.09!11.23!PRRX1;;chr11:65686732..65686756,+!p2@DRAP1!1.08!46.39!DRAP1;;chr7:19157043..19157088,-!p2@TWIST1!1.08!27.80!TWIST1;;chr16:86600426..86600441,+!p1@FOXC2!1.07!26.51!FOXC2;;chr9:77112244..77112262,+!p1@RORB!1.07!12.15!RORB;;chr16:29819446..29819471,+!p9@MAZ!1.05!30.75!MAZ;;chr3:141121847..141121868,+!p5@ZBTB38!1.05!15.83!ZBTB38;;chr12:66218836..66218888,+!p1@HMGA2!1.04!93.89!HMGA2;;chr7:113726357..113726443,+!p1@FOXP2!1.04!17.31!FOXP2;;chr3:21792585..21792625,-!p2@ZNF385D!1.04!11.05!ZNF385D;;chr15:60884706..60884743,-!p1@RORA!1.03!51.18!RORA;;chr12:115122262..115122271,-!p7@TBX3!1.03!9.76!TBX3;;chr2:200322654..200322707,-!p2@SATB2!1.02!13.99!SATB2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.02!9.57!HOXC5;;chr7:27224842..27224872,-!p1@HOXA11!1.01!9.21!HOXA11;;chr5:133450365..133450444,+!p1@TCF7!1.00!41.61!TCF7;;chr8:72756267..72756296,-!p4@MSC!1.00!13.44!MSC;;chr1:170632115..170632136,+!p9@PRRX1!0.99!8.84!PRRX1;;chr3:21792682..21792720,-!p1@ZNF385D!0.97!8.28!ZNF385D;;chr19:13134457..13134462,+!p5@NFIX!0.96!14.91!NFIX;;chr7:27192185..27192209,-!p1@HOXA3!0.95!7.92!HOXA3;;chr21:36260295..36260310,-!p3@RUNX1!0.94!12.70!RUNX1;;chr2:172949484..172949522,+!p1@DLX1!0.94!7.73!DLX1;;chr8:72755987..72756002,-!p7@MSC!0.93!7.55!MSC;;chr12:66218573..66218596,+!p7@HMGA2!0.91!10.86!HMGA2;;chr16:29819403..29819442,+!p5@MAZ!0.90!60.57!MAZ;;chr12:26277956..26277980,-!p1@BHLHE41!0.89!25.41!BHLHE41;;chr8:72756023..72756055,-!p6@MSC!0.89!8.47!MSC;;chr3:21792631..21792665,-!p3@ZNF385D!0.89!6.81!ZNF385D;;chr1:170632647..170632659,+!p17@PRRX1!0.89!6.81!PRRX1;;chr18:22932080..22932170,-!p1@ZNF521!0.88!29.64!ZNF521;;chr12:66218212..66218244,+!p5@HMGA2!0.88!9.76!HMGA2;;chr12:115121962..115121987,-!p1@TBX3!0.87!56.89!TBX3;;chr11:46299199..46299233,+!p1@CREB3L1!0.87!35.16!CREB3L1;;chr19:13134772..13134822,+!p2@NFIX!0.87!9.76!NFIX;;chr8:72756637..72756664,-!p3@MSC!0.87!7.36!MSC;;chr3:157823517..157823562,-!p1@SHOX2!0.87!7.00!SHOX2;;chr7:15726243..15726293,-!p2@MEOX2!0.87!6.44!MEOX2;;chr12:54380404..54380433,+!p3@HOXC10!0.87!6.44!HOXC10;;chr6:34204921..34204939,+!p3@HMGA1!0.85!194.42!HMGA1;;chr14:24837368..24837401,+!p1@NFATC4!0.85!14.91!NFATC4;;chr19:35759824..35759891,+!p1@USF2!0.84!195.15!USF2;;chr12:52445218..52445237,+!p1@NR4A1!0.84!80.45!NR4A1;;chr17:45810594..45810608,+!p1@TBX21!0.84!5.89!TBX21;;chr2:102091144..102091183,-!p2@RFX8!0.84!5.89!RFX8;;chr2:176994408..176994492,+!p1@HOXD8!0.83!5.71!HOXD8;;chr3:147127142..147127168,+!p1@ZIC1!0.83!5.71!ZIC1;;chr10:64018918..64018936,+!p2@ZNF365!0.83!5.71!ZNF365;;chr5:137801160..137801176,+!p1@EGR1!0.82!596.14!EGR1;;chr17:38256822..38256851,-!p1@NR1D1!0.82!47.68!NR1D1;;chr16:86612320..86612394,+!p1@FOXL1!0.81!5.52!FOXL1;;chr12:66218904..66218913,+!p11@HMGA2!0.81!5.52!HMGA2;;chr17:59477233..59477263,+!p1@TBX2!0.80!17.67!TBX2;;chr18:3448455..3448480,+!p5@TGIF1!0.80!10.31!TGIF1;;chr7:27196217..27196246,-!p2@HOXA7!0.80!5.34!HOXA7;;chr7:27224795..27224840,-!p2@HOXA11!0.80!5.34!HOXA11;;chr8:77593750..77593757,+!p3@ZFHX4!0.79!5.15!ZFHX4;;chr1:170632325..170632339,+!p24@PRRX1!0.79!5.15!PRRX1;;chr12:27485823..27485868,+!p2@ARNTL2!0.78!22.28!ARNTL2;;chr12:66218003..66218018,+!p9@HMGA2!0.78!6.26!HMGA2;;chr1:59249645..59249656,-!p4@JUN!0.77!13.07!JUN;;chr12:66218183..66218209,+!p4@HMGA2!0.77!9.94!HMGA2;;chr12:27485762..27485776,+!p3@ARNTL2!0.76!13.62!ARNTL2;;chr15:60884747..60884774,-!p3@RORA!0.76!12.52!RORA;;chr7:14028488..14028516,-!p2@ETV1!0.76!5.34!ETV1;;chr16:86600870..86600921,+!p2@FOXC2!0.76!4.79!FOXC2;;chr2:19558327..19558334,-!p2@OSR1!0.76!4.79!OSR1;;chr11:65686952..65686975,+!p5@DRAP1!0.75!27.98!DRAP1;;chr7:17338324..17338341,+!p3@AHR!0.75!16.75!AHR;;chr7:14029312..14029325,-!p4@ETV1!0.75!5.89!ETV1;;chr2:176969179..176969226,+!p2@HOXD11!0.75!4.60!HOXD11;;chr3:141121820..141121838,+!p9@ZBTB38!0.75!4.60!ZBTB38;;chr3:21792790..21792824,-!p4@ZNF385D!0.75!4.60!ZNF385D;;chr17:46806067..46806097,-!p1@HOXB13!0.75!4.60!HOXB13;;chr1:170632867..170632878,+!p21@PRRX1!0.75!4.60!PRRX1;;chr1:23857698..23857733,-!p1@E2F2!0.74!8.65!E2F2;;chr12:2986275..2986363,-!p1@FOXM1!0.73!49.52!FOXM1;;chr6:106534230..106534254,+!p2@PRDM1!0.73!11.97!PRDM1;;chr5:158526917..158526932,-!p1@EBF1!0.73!11.78!EBF1;;chr12:54402745..54402788,+!p1@HOXC8!0.73!4.42!HOXC8;;chr2:119605214..119605230,-!p1@EN1!0.73!4.42!EN1;;chr17:59477403..59477414,+!p4@TBX2!0.73!4.42!TBX2;;chr7:27135591..27135658,-!p1@HOXA1!0.72!8.65!HOXA1;;chr12:66218378..66218401,+!p6@HMGA2!0.72!7.00!HMGA2;;chr8:72756213..72756243,-!p5@MSC!0.72!5.71!MSC;;chr1:119530493..119530572,-!p1@TBX15!0.72!4.23!TBX15;;chr1:170632414..170632421,+!p28@PRRX1!0.72!4.23!PRRX1;;chr9:77112225..77112238,+!p2@RORB!0.72!4.23!RORB;;chr20:32274179..32274213,-!p1@E2F1!0.70!30.01!E2F1;;chr11:65686802..65686818,+!p6@DRAP1!0.70!7.55!DRAP1;;chr16:29819558..29819572,+!p28@MAZ!0.70!4.05!MAZ;;chr1:170633194..170633205,+!p18@PRRX1!0.69!3.87!PRRX1;;chr7:27213893..27213954,-!p1@HOXA10!0.69!3.87!HOXA10;;chr8:72756380..72756427,-!p8@MSC!0.69!3.87!MSC;;chrY:2803415..2803468,+!p1@ZFY!0.69!3.87!ZFY;;chr19:23433144..23433204,-!p1@ZNF724P!0.68!19.15!ZNF724P;;chr1:158979872..158979898,+!p3@IFI16!0.68!13.07!IFI16;;chr19:31840313..31840380,-!p1@TSHZ3!0.68!10.68!TSHZ3;;chr2:71127699..71127744,+!p1@VAX2!0.68!8.47!VAX2;;chr12:26277929..26277955,-!p3@BHLHE41!0.68!5.71!BHLHE41;;chr1:158985469..158985489,+!p7@IFI16!0.68!4.60!IFI16;;chr5:137804484..137804498,+!p2@EGR1!0.67!16.57!EGR1;;chr9:16870710..16870763,-!p1@BNC2!0.67!6.81!BNC2;;chr11:6947720..6947812,+!p1@ZNF215!0.67!4.97!ZNF215;;chr12:54393880..54393962,+!p1@HOXC9!0.67!3.68!HOXC9;;chr12:66218923..66218934,+!p14@HMGA2!0.67!3.68!HMGA2;;chr16:67198633..67198671,+!p1@HSF4!0.67!3.68!HSF4;;chr19:31840278..31840300,-!p5@TSHZ3!0.67!3.68!TSHZ3;;chr12:96588143..96588185,+!p1@ELK3!0.66!51.18!ELK3;;chr17:46621937..46621966,-!p2@HOXB2!0.66!10.86!HOXB2;;chr2:172967621..172967637,-!p1@DLX2!0.66!10.68!DLX2;;chr2:185463247..185463263,+!p1@ZNF804A!0.66!6.81!ZNF804A;;chr8:72756667..72756736,-!p2@MSC!0.66!5.89!MSC;;chr4:26322267..26322334,+!p3@RBPJ!0.65!9.39!RBPJ;;chr11:65668011..65668020,-!p3@FOSL1!0.65!3.50!FOSL1;;chr12:77459306..77459365,-!p1@E2F7!0.64!49.71!E2F7;;chr5:72744594..72744609,-!p1@FOXD1!0.64!17.86!FOXD1;;chr3:114343768..114343822,-!p1@ZBTB20!0.64!17.12!ZBTB20;;chr6:106534192..106534224,+!p1@PRDM1!0.64!10.68!PRDM1;;chr7:137686552..137686564,-!p9@CREB3L2!0.64!5.34!CREB3L2;;chr5:137804405..137804444,+!p3@EGR1!0.64!4.23!EGR1;;chr21:47063625..47063658,+!p1@PCBP3!0.63!16.39!PCBP3;;chr9:109625401..109625458,+!p1@ZNF462!0.63!9.76!ZNF462;;chr2:200323414..200323455,-!p1@SATB2!0.63!7.73!SATB2;;chr2:45236540..45236577,-!p1@SIX2!0.63!3.31!SIX2;;chr2:74741569..74741620,+!p1@TLX2!0.63!3.31!TLX2;;chr2:85981107..85981120,+!p3@ATOH8!0.63!3.31!ATOH8;;chr19:46801639..46801699,+!p1@HIF3A!0.63!3.31!HIF3A;;chr21:36260980..36261011,-!p1@RUNX1!0.62!108.81!RUNX1;;chr8:49833978..49833996,-!p1@SNAI2!0.62!78.80!SNAI2;;chr3:71114066..71114114,-!p1@FOXP1!0.62!76.59!FOXP1;;chr5:88178983..88179012,-!p1@MEF2C!0.62!28.90!MEF2C;;chr1:164528445..164528459,+!p2@PBX1!0.62!11.41!PBX1;;chr9:102584262..102584276,+!p1@NR4A3!0.62!7.92!NR4A3;;chrY:21906594..21906622,-!p1@KDM5D!0.62!3.13!KDM5D;;chr1:170632583..170632590,+!p26@PRRX1!0.62!3.13!PRRX1;;chr7:17338266..17338282,+!p1@AHR!0.61!40.14!AHR;;chr17:41277372..41277418,-!p1@BRCA1!0.61!13.07!BRCA1;;chr5:134369905..134369972,-!p1@PITX1!0.61!5.15!PITX1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.61!3.31!GLIS1;;chr12:27485785..27485816,+!p1@ARNTL2!0.60!25.04!ARNTL2;;chr12:48298785..48298828,-!p1@VDR!0.60!18.78!VDR;;chr2:74730430..74730451,-!p1@LBX2!0.60!5.34!LBX2;;chr21:36260343..36260402,-!p6@RUNX1!0.60!5.15!RUNX1;;chr5:43067636..43067674,+!p6@ZNF131!0.60!4.23!ZNF131;;chr1:170632907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| ||
Line 38: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/myxofibrosarcoma%2520cell%2520line%253aNMFH-1.CNhs11821.10684-109E9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/myxofibrosarcoma%2520cell%2520line%253aNMFH-1.CNhs11821.10684-109E9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/myxofibrosarcoma%2520cell%2520line%253aNMFH-1.CNhs11821.10684-109E9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/myxofibrosarcoma%2520cell%2520line%253aNMFH-1.CNhs11821.10684-109E9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/myxofibrosarcoma%2520cell%2520line%253aNMFH-1.CNhs11821.10684-109E9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10684-109E9 | |id=FF:10684-109E9 | ||
|is_a=CL:0002620;;DOID:1907;;EFO:0002091;;FF:0000210;;FF:0100460 | |is_a=CL:0002620;;DOID:1907;;EFO:0002091;;FF:0000210;;FF:0100460 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11821 | |||
|library_id_phase_based=2:CNhs11821 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10684 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10684 | |||
|name=myxofibrosarcoma cell line:NMFH-1 | |name=myxofibrosarcoma cell line:NMFH-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 46: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11821,LSID829,release010,COMPLETED | |profile_hcage=CNhs11821,LSID829,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=109 | |rna_box=109 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 58: | Line 75: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.09E+11 | ||
|rna_weight_ug=45.12893 | |rna_weight_ug=45.12893 | ||
|sample_age=89 | |sample_age=89 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB2346 | |sample_cell_catalog=RCB2346 | ||
|sample_cell_line=NMFH-1 | |sample_cell_line=NMFH-1 | ||
Line 82: | Line 100: | ||
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.75059758101;HOX{A4,D4}:1.49675078236;ZNF238:1.44841204252;HBP1_HMGB_SSRP1_UBTF:1.28764013759;HES1:1.21814747026;TFDP1:1.19681297782;E2F1..5:1.1258781841;GFI1B:1.11747203136;EN1,2:1.10948536258;GFI1:1.089953369;FOXQ1:1.02180001229;PBX1:1.01131694716;NFY{A,B,C}:1.00829191455;ELK1,4_GABP{A,B1}:1.00498818573;CDC5L:0.992148608576;bHLH_family:0.889825831203;ZBTB16:0.877821277231;SREBF1,2:0.850602035696;MYB:0.829976411407;NKX6-1,2:0.81791235962;PAX3,7:0.782322646107;ZNF384:0.781391388434;FOXD3:0.755760027908;GZF1:0.654173907259;NFIX:0.602195319335;ZNF143:0.561645138375;PAX1,9:0.546764278107;XBP1:0.545330537492;VSX1,2:0.509225086339;TEF:0.495907765142;TLX1..3_NFIC{dimer}:0.494739881681;PAX4:0.489327034152;FOS_FOS{B,L1}_JUN{B,D}:0.479326987925;SOX{8,9,10}:0.459108523897;YY1:0.451946159106;POU6F1:0.444017791322;EVI1:0.433646473597;PAX8:0.408585758802;NFE2:0.397772571451;POU1F1:0.394452101365;NR1H4:0.393813387984;NKX2-2,8:0.386315981033;ALX1:0.381267406034;PDX1:0.378515897244;NFE2L2:0.375631627483;PAX2:0.37385342879;POU3F1..4:0.368721950865;FOX{I1,J2}:0.367136449212;NR6A1:0.356657167511;NKX3-1:0.354561706833;CREB1:0.346185415502;GTF2I:0.343726094658;TAL1_TCF{3,4,12}:0.33729582095;AHR_ARNT_ARNT2:0.331875039828;TFAP2B:0.316081859552;TOPORS:0.313685111471;CUX2:0.307331939377;BACH2:0.303429213128;FOXP1:0.302747683856;PPARG:0.301319241577;NHLH1,2:0.290743468792;BREu{core}:0.279935546726;FOSL2:0.278440528089;MTE{core}:0.271751427961;ATF5_CREB3:0.259598589234;ADNP_IRX_SIX_ZHX:0.254259525185;HOX{A5,B5}:0.247352522344;DMAP1_NCOR{1,2}_SMARC:0.246213878653;NFATC1..3:0.24261170986;PAX6:0.232874930134;ARID5B:0.228726074133;GTF2A1,2:0.226644117615;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.225686899158;PAX5:0.212526900172;PRRX1,2:0.212084261022;TEAD1:0.20423830674;ZBTB6:0.194280895269;RFX1:0.190563738127;CRX:0.18802696491;MAFB:0.186509790665;MED-1{core}:0.186057701978;AIRE:0.181939930342;STAT2,4,6:0.170911310951;NRF1:0.160372975089;UFEwm:0.159150082492;ATF6:0.15474095554;TLX2:0.147435175584;PRDM1:0.146816466977;MYFfamily:0.146606109128;FOXL1:0.131082888583;MYBL2:0.130839232431;ZFP161:0.122963648957;ALX4:0.1208252592;HLF:0.105317927758;ATF4:0.10318236966;NKX2-1,4:0.101879909992;LHX3,4:0.100194594629;FOXO1,3,4:0.0739043731141;POU2F1..3:0.0547851421078;HOXA9_MEIS1:0.0432162440891;XCPE1{core}:0.0285493983128;STAT5{A,B}:0.0162129676491;JUN:0.00106276629898;NFIL3:-0.00120247257353;LEF1_TCF7_TCF7L1,2:-0.0176539552469;MZF1:-0.0246854835807;ESR1:-0.0366521381909;BPTF:-0.0405889992885;ELF1,2,4:-0.0447220546402;POU5F1:-0.0484324617947;TBX4,5:-0.0562321384176;FOXA2:-0.0725769425373;RUNX1..3:-0.0883054299214;TFCP2:-0.0883760407874;ATF2:-0.0932975357154;PITX1..3:-0.0937365937205;RXR{A,B,G}:-0.102614373411;HIC1:-0.125956941139;ESRRA:-0.127826848931;SOX17:-0.136710435229;STAT1,3:-0.139534024266;IKZF1:-0.140316341032;TP53:-0.142797567987;PATZ1:-0.15928935863;EGR1..3:-0.169952024826;TFAP2{A,C}:-0.173831363013;HNF1A:-0.177823271506;CDX1,2,4:-0.17857992381;MTF1:-0.18331298021;IKZF2:-0.186361590771;RFX2..5_RFXANK_RFXAP:-0.207016970672;FOXN1:-0.214372753021;NKX3-2:-0.219028092969;HNF4A_NR2F1,2:-0.222856911838;NFKB1_REL_RELA:-0.229035986055;TFAP4:-0.229609192312;MEF2{A,B,C,D}:-0.231453632577;SRF:-0.240088708377;RORA:-0.240511122772;SP1:-0.242998820682;NFE2L1:-0.245972160958;TBP:-0.253540889341;HSF1,2:-0.282227224805;RXRA_VDR{dimer}:-0.293781805886;FOX{D1,D2}:-0.304574130921;SPI1:-0.319043113238;ONECUT1,2:-0.323322845967;DBP:-0.32840643335;HIF1A:-0.329934137713;NANOG{mouse}:-0.3308724827;AR:-0.331208767494;KLF4:-0.354183832904;IRF1,2:-0.371486732758;GATA6:-0.376101453334;SOX5:-0.386401034515;FOXP3:-0.386762486588;OCT4_SOX2{dimer}:-0.393636384082;HAND1,2:-0.420269892239;CEBPA,B_DDIT3:-0.424055501923;REST:-0.440746264623;MAZ:-0.442929957113;GATA4:-0.452542413445;SPIB:-0.464940190593;IRF7:-0.465327985295;ETS1,2:-0.46734382462;RBPJ:-0.488671849883;ZIC1..3:-0.505291060956;HOX{A6,A7,B6,B7}:-0.531804626751;SPZ1:-0.532238301293;LMO2:-0.547973430946;NKX2-3_NKX2-5:-0.584423471698;TGIF1:-0.586536581543;RREB1:-0.629686540162;FOX{F1,F2,J1}:-0.645599379247;GLI1..3:-0.726334249244;GCM1,2:-0.731835112275;HMX1:-0.7431125887;SMAD1..7,9:-0.743937117855;FOXM1:-0.754321368839;NR3C1:-0.762229722575;NR5A1,2:-0.780337432028;ZNF423:-0.821592483554;ZNF148:-0.870350697812;SOX2:-0.919380122594;NANOG:-0.971631252924;EBF1:-0.98019957915;HMGA1,2:-1.03138906305;MYOD1:-1.08503148607;ZEB1:-1.16290937701;SNAI1..3:-1.16884148619;T:-1.18428191842;EP300:-1.30139249992 | |top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.75059758101;HOX{A4,D4}:1.49675078236;ZNF238:1.44841204252;HBP1_HMGB_SSRP1_UBTF:1.28764013759;HES1:1.21814747026;TFDP1:1.19681297782;E2F1..5:1.1258781841;GFI1B:1.11747203136;EN1,2:1.10948536258;GFI1:1.089953369;FOXQ1:1.02180001229;PBX1:1.01131694716;NFY{A,B,C}:1.00829191455;ELK1,4_GABP{A,B1}:1.00498818573;CDC5L:0.992148608576;bHLH_family:0.889825831203;ZBTB16:0.877821277231;SREBF1,2:0.850602035696;MYB:0.829976411407;NKX6-1,2:0.81791235962;PAX3,7:0.782322646107;ZNF384:0.781391388434;FOXD3:0.755760027908;GZF1:0.654173907259;NFIX:0.602195319335;ZNF143:0.561645138375;PAX1,9:0.546764278107;XBP1:0.545330537492;VSX1,2:0.509225086339;TEF:0.495907765142;TLX1..3_NFIC{dimer}:0.494739881681;PAX4:0.489327034152;FOS_FOS{B,L1}_JUN{B,D}:0.479326987925;SOX{8,9,10}:0.459108523897;YY1:0.451946159106;POU6F1:0.444017791322;EVI1:0.433646473597;PAX8:0.408585758802;NFE2:0.397772571451;POU1F1:0.394452101365;NR1H4:0.393813387984;NKX2-2,8:0.386315981033;ALX1:0.381267406034;PDX1:0.378515897244;NFE2L2:0.375631627483;PAX2:0.37385342879;POU3F1..4:0.368721950865;FOX{I1,J2}:0.367136449212;NR6A1:0.356657167511;NKX3-1:0.354561706833;CREB1:0.346185415502;GTF2I:0.343726094658;TAL1_TCF{3,4,12}:0.33729582095;AHR_ARNT_ARNT2:0.331875039828;TFAP2B:0.316081859552;TOPORS:0.313685111471;CUX2:0.307331939377;BACH2:0.303429213128;FOXP1:0.302747683856;PPARG:0.301319241577;NHLH1,2:0.290743468792;BREu{core}:0.279935546726;FOSL2:0.278440528089;MTE{core}:0.271751427961;ATF5_CREB3:0.259598589234;ADNP_IRX_SIX_ZHX:0.254259525185;HOX{A5,B5}:0.247352522344;DMAP1_NCOR{1,2}_SMARC:0.246213878653;NFATC1..3:0.24261170986;PAX6:0.232874930134;ARID5B:0.228726074133;GTF2A1,2:0.226644117615;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.225686899158;PAX5:0.212526900172;PRRX1,2:0.212084261022;TEAD1:0.20423830674;ZBTB6:0.194280895269;RFX1:0.190563738127;CRX:0.18802696491;MAFB:0.186509790665;MED-1{core}:0.186057701978;AIRE:0.181939930342;STAT2,4,6:0.170911310951;NRF1:0.160372975089;UFEwm:0.159150082492;ATF6:0.15474095554;TLX2:0.147435175584;PRDM1:0.146816466977;MYFfamily:0.146606109128;FOXL1:0.131082888583;MYBL2:0.130839232431;ZFP161:0.122963648957;ALX4:0.1208252592;HLF:0.105317927758;ATF4:0.10318236966;NKX2-1,4:0.101879909992;LHX3,4:0.100194594629;FOXO1,3,4:0.0739043731141;POU2F1..3:0.0547851421078;HOXA9_MEIS1:0.0432162440891;XCPE1{core}:0.0285493983128;STAT5{A,B}:0.0162129676491;JUN:0.00106276629898;NFIL3:-0.00120247257353;LEF1_TCF7_TCF7L1,2:-0.0176539552469;MZF1:-0.0246854835807;ESR1:-0.0366521381909;BPTF:-0.0405889992885;ELF1,2,4:-0.0447220546402;POU5F1:-0.0484324617947;TBX4,5:-0.0562321384176;FOXA2:-0.0725769425373;RUNX1..3:-0.0883054299214;TFCP2:-0.0883760407874;ATF2:-0.0932975357154;PITX1..3:-0.0937365937205;RXR{A,B,G}:-0.102614373411;HIC1:-0.125956941139;ESRRA:-0.127826848931;SOX17:-0.136710435229;STAT1,3:-0.139534024266;IKZF1:-0.140316341032;TP53:-0.142797567987;PATZ1:-0.15928935863;EGR1..3:-0.169952024826;TFAP2{A,C}:-0.173831363013;HNF1A:-0.177823271506;CDX1,2,4:-0.17857992381;MTF1:-0.18331298021;IKZF2:-0.186361590771;RFX2..5_RFXANK_RFXAP:-0.207016970672;FOXN1:-0.214372753021;NKX3-2:-0.219028092969;HNF4A_NR2F1,2:-0.222856911838;NFKB1_REL_RELA:-0.229035986055;TFAP4:-0.229609192312;MEF2{A,B,C,D}:-0.231453632577;SRF:-0.240088708377;RORA:-0.240511122772;SP1:-0.242998820682;NFE2L1:-0.245972160958;TBP:-0.253540889341;HSF1,2:-0.282227224805;RXRA_VDR{dimer}:-0.293781805886;FOX{D1,D2}:-0.304574130921;SPI1:-0.319043113238;ONECUT1,2:-0.323322845967;DBP:-0.32840643335;HIF1A:-0.329934137713;NANOG{mouse}:-0.3308724827;AR:-0.331208767494;KLF4:-0.354183832904;IRF1,2:-0.371486732758;GATA6:-0.376101453334;SOX5:-0.386401034515;FOXP3:-0.386762486588;OCT4_SOX2{dimer}:-0.393636384082;HAND1,2:-0.420269892239;CEBPA,B_DDIT3:-0.424055501923;REST:-0.440746264623;MAZ:-0.442929957113;GATA4:-0.452542413445;SPIB:-0.464940190593;IRF7:-0.465327985295;ETS1,2:-0.46734382462;RBPJ:-0.488671849883;ZIC1..3:-0.505291060956;HOX{A6,A7,B6,B7}:-0.531804626751;SPZ1:-0.532238301293;LMO2:-0.547973430946;NKX2-3_NKX2-5:-0.584423471698;TGIF1:-0.586536581543;RREB1:-0.629686540162;FOX{F1,F2,J1}:-0.645599379247;GLI1..3:-0.726334249244;GCM1,2:-0.731835112275;HMX1:-0.7431125887;SMAD1..7,9:-0.743937117855;FOXM1:-0.754321368839;NR3C1:-0.762229722575;NR5A1,2:-0.780337432028;ZNF423:-0.821592483554;ZNF148:-0.870350697812;SOX2:-0.919380122594;NANOG:-0.971631252924;EBF1:-0.98019957915;HMGA1,2:-1.03138906305;MYOD1:-1.08503148607;ZEB1:-1.16290937701;SNAI1..3:-1.16884148619;T:-1.18428191842;EP300:-1.30139249992 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10684-109E9;search_select_hide=table117:FF:10684-109E9 | |||
}} | }} |
Latest revision as of 14:32, 3 June 2020
Name: | myxofibrosarcoma cell line:NMFH-1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11821 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11821
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11821
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.509 |
10 | 10 | 0.22 |
100 | 100 | 0.98 |
101 | 101 | 0.473 |
102 | 102 | 0.892 |
103 | 103 | 0.548 |
104 | 104 | 0.728 |
105 | 105 | 0.308 |
106 | 106 | 0.0387 |
107 | 107 | 0.337 |
108 | 108 | 0.219 |
109 | 109 | 0.695 |
11 | 11 | 0.281 |
110 | 110 | 0.42 |
111 | 111 | 0.0617 |
112 | 112 | 0.215 |
113 | 113 | 0.033 |
114 | 114 | 0.0196 |
115 | 115 | 0.86 |
116 | 116 | 0.929 |
117 | 117 | 0.967 |
118 | 118 | 0.411 |
119 | 119 | 0.0503 |
12 | 12 | 0.546 |
120 | 120 | 0.717 |
121 | 121 | 0.969 |
122 | 122 | 0.334 |
123 | 123 | 0.095 |
124 | 124 | 0.194 |
125 | 125 | 0.37 |
126 | 126 | 0.623 |
127 | 127 | 0.423 |
128 | 128 | 0.427 |
129 | 129 | 0.0921 |
13 | 13 | 0.329 |
130 | 130 | 0.0254 |
131 | 131 | 0.465 |
132 | 132 | 0.465 |
133 | 133 | 0.00672 |
134 | 134 | 0.338 |
135 | 135 | 0.12 |
136 | 136 | 0.534 |
137 | 137 | 0.625 |
138 | 138 | 0.587 |
139 | 139 | 1.05473e-4 |
14 | 14 | 0.412 |
140 | 140 | 0.015 |
141 | 141 | 0.345 |
142 | 142 | 0.669 |
143 | 143 | 0.0115 |
144 | 144 | 0.96 |
145 | 145 | 0.258 |
146 | 146 | 0.57 |
147 | 147 | 0.533 |
148 | 148 | 0.808 |
149 | 149 | 0.272 |
15 | 15 | 0.249 |
150 | 150 | 0.416 |
151 | 151 | 0.343 |
152 | 152 | 0.084 |
153 | 153 | 0.28 |
154 | 154 | 0.356 |
155 | 155 | 0.357 |
156 | 156 | 0.632 |
157 | 157 | 0.135 |
158 | 158 | 0.284 |
159 | 159 | 0.107 |
16 | 16 | 0.485 |
160 | 160 | 0.153 |
161 | 161 | 0.228 |
162 | 162 | 0.71 |
163 | 163 | 0.977 |
164 | 164 | 0.62 |
165 | 165 | 0.965 |
166 | 166 | 0.739 |
167 | 167 | 0.148 |
168 | 168 | 0.33 |
169 | 169 | 0.227 |
17 | 17 | 0.125 |
18 | 18 | 0.816 |
19 | 19 | 0.566 |
2 | 2 | 0.938 |
20 | 20 | 0.753 |
21 | 21 | 0.499 |
22 | 22 | 0.46 |
23 | 23 | 0.121 |
24 | 24 | 0.993 |
25 | 25 | 0.726 |
26 | 26 | 0.726 |
27 | 27 | 0.133 |
28 | 28 | 0.505 |
29 | 29 | 0.937 |
3 | 3 | 0.382 |
30 | 30 | 0.677 |
31 | 31 | 0.45 |
32 | 32 | 0.53 |
33 | 33 | 0.854 |
34 | 34 | 0.245 |
35 | 35 | 0.295 |
36 | 36 | 0.922 |
37 | 37 | 0.451 |
38 | 38 | 0.4 |
39 | 39 | 0.637 |
4 | 4 | 0.0761 |
40 | 40 | 0.219 |
41 | 41 | 0.0914 |
42 | 42 | 0.54 |
43 | 43 | 0.213 |
44 | 44 | 0.187 |
45 | 45 | 0.258 |
46 | 46 | 0.461 |
47 | 47 | 0.31 |
48 | 48 | 0.35 |
49 | 49 | 0.208 |
5 | 5 | 0.0684 |
50 | 50 | 0.993 |
51 | 51 | 0.416 |
52 | 52 | 0.141 |
53 | 53 | 0.56 |
54 | 54 | 0.519 |
55 | 55 | 0.731 |
56 | 56 | 0.524 |
57 | 57 | 0.49 |
58 | 58 | 0.227 |
59 | 59 | 0.0711 |
6 | 6 | 0.391 |
60 | 60 | 0.134 |
61 | 61 | 0.954 |
62 | 62 | 0.217 |
63 | 63 | 0.248 |
64 | 64 | 0.654 |
65 | 65 | 0.435 |
66 | 66 | 0.0911 |
67 | 67 | 0.613 |
68 | 68 | 0.117 |
69 | 69 | 0.332 |
7 | 7 | 0.262 |
70 | 70 | 0.114 |
71 | 71 | 0.441 |
72 | 72 | 0.708 |
73 | 73 | 0.269 |
74 | 74 | 0.13 |
75 | 75 | 0.859 |
76 | 76 | 0.936 |
77 | 77 | 0.123 |
78 | 78 | 0.0174 |
79 | 79 | 0.959 |
8 | 8 | 0.445 |
80 | 80 | 0.237 |
81 | 81 | 0.719 |
82 | 82 | 2.17527e-4 |
83 | 83 | 0.737 |
84 | 84 | 0.534 |
85 | 85 | 0.221 |
86 | 86 | 0.46 |
87 | 87 | 0.235 |
88 | 88 | 0.658 |
89 | 89 | 0.0562 |
9 | 9 | 0.72 |
90 | 90 | 0.239 |
91 | 91 | 0.328 |
92 | 92 | 0.0616 |
93 | 93 | 0.774 |
94 | 94 | 0.136 |
95 | 95 | 0.929 |
96 | 96 | 0.174 |
97 | 97 | 0.596 |
98 | 98 | 0.642 |
99 | 99 | 0.984 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11821
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
CL:0002620 skin fibroblast
DOID:1907 malignant fibroxanthoma
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100460 fibrosarcoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
4231 (histiocytoma)
201 (connective tissue cancer)
0060100 (musculoskeletal system cancer)
1115 (sarcoma)
1907 (malignant fibroxanthoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100453 (fibroblast cell line sample)
0100400 (sarcoma cell line sample)
0100460 (fibrosarcoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)