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{{f5samples
{{f5samples
|id=FF:10684-109E9
|DRA_sample_Accession=CAGE@SAMD00005282
|name=myxofibrosarcoma cell line:NMFH-1
|accession_numbers=CAGE;DRX007959;DRR008831;DRZ000256;DRZ001641;DRZ011606;DRZ012991
|sample_id=10684
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
|rna_tube_id=109E9
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
|rna_box=109
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:4231,DOID:201,DOID:0060100,DOID:1115,DOID:1907
|rna_position=E9
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100453,FF:0100400,FF:0100460
|sample_cell_lot=
|comment=
|sample_cell_catalog=RCB2346
|created_by=
|sample_company=RIKEN Bioresource centre
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!2.31!226.27!PRRX1;;chr1:170633348..170633399,+!p2@PRRX1!1.63!56.34!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!1.62!41.06!PRRX1;;chr12:115122318..115122331,-!p2@TBX3!1.53!32.77!TBX3;;chr11:65667884..65667895,-!p2@FOSL1!1.50!114.51!FOSL1;;chr1:170632477..170632506,+!p6@PRRX1!1.50!30.56!PRRX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.50!30.38!HOXC5;;chr2:19558373..19558392,-!p1@OSR1!1.49!80.45!OSR1;;chr1:170632250..170632277,+!p7@PRRX1!1.46!28.17!PRRX1;;chr12:66218598..66218645,+!p2@HMGA2!1.43!117.09!HMGA2;;chr6:1312325..1312340,+!p1@FOXQ1!1.42!40.87!FOXQ1;;chr12:115121770..115121781,-!p4@TBX3!1.39!23.75!TBX3;;chr12:66218255..66218304,+!p3@HMGA2!1.35!56.70!HMGA2;;chr6:1389789..1389821,+!p1@FOXF2!1.35!29.09!FOXF2;;chr12:115121802..115121814,-!p5@TBX3!1.33!20.62!TBX3;;chr1:158985493..158985535,+!p4@IFI16!1.32!29.83!IFI16;;chr7:27205106..27205134,-!p2@HOXA9!1.32!20.07!HOXA9;;chr8:25902876..25902936,-!p1@EBF2!1.32!20.07!EBF2;;chr11:65667846..65667868,-!p1@FOSL1!1.31!500.03!FOSL1;;chr7:27196267..27196311,-!p1@HOXA7!1.31!19.52!HOXA7;;chr2:239756671..239756732,+!p1@TWIST2!1.30!59.28!TWIST2;;chr1:170632959..170632987,+!p4@PRRX1!1.26!18.96!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!1.26!17.31!PRRX1;;chr2:102091566..102091581,-!p1@RFX8!1.25!16.94!RFX8;;chr5:321810..321877,+!p1@AHRR!1.24!51.92!AHRR;;chr1:170632439..170632465,+!p11@PRRX1!1.24!16.39!PRRX1;;chr1:170633262..170633285,+!p3@PRRX1!1.21!17.31!PRRX1;;chr7:14029283..14029311,-!p1@ETV1!1.19!76.22!ETV1;;chr1:170632762..170632786,+!p13@PRRX1!1.19!14.54!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!1.18!13.99!PRRX1;;chr2:239756739..239756755,+!p2@TWIST2!1.16!23.20!TWIST2;;chr6:45296048..45296082,+!p1@RUNX2!1.16!15.46!RUNX2;;chr19:31840130..31840160,-!p2@TSHZ3!1.15!20.25!TSHZ3;;chr12:115122303..115122314,-!p6@TBX3!1.15!13.07!TBX3;;chr8:77593474..77593612,+!p1@ZFHX4!1.14!53.39!ZFHX4;;chr7:27205136..27205164,-!p1@HOXA9!1.13!12.52!HOXA9;;chr7:19157248..19157268,-!p1@TWIST1!1.12!34.06!TWIST1;;chr2:176969228..176969260,+!p1@HOXD11!1.10!11.60!HOXD11;;chr8:72756063..72756125,-!p1@MSC!1.09!23.01!MSC;;chr6:1389989..1390019,+!p2@FOXF2!1.09!11.41!FOXF2;;chr1:170632310..170632321,+!p15@PRRX1!1.09!11.41!PRRX1;;chr1:170632137..170632172,+!p10@PRRX1!1.09!11.23!PRRX1;;chr11:65686732..65686756,+!p2@DRAP1!1.08!46.39!DRAP1;;chr7:19157043..19157088,-!p2@TWIST1!1.08!27.80!TWIST1;;chr16:86600426..86600441,+!p1@FOXC2!1.07!26.51!FOXC2;;chr9:77112244..77112262,+!p1@RORB!1.07!12.15!RORB;;chr16:29819446..29819471,+!p9@MAZ!1.05!30.75!MAZ;;chr3:141121847..141121868,+!p5@ZBTB38!1.05!15.83!ZBTB38;;chr12:66218836..66218888,+!p1@HMGA2!1.04!93.89!HMGA2;;chr7:113726357..113726443,+!p1@FOXP2!1.04!17.31!FOXP2;;chr3:21792585..21792625,-!p2@ZNF385D!1.04!11.05!ZNF385D;;chr15:60884706..60884743,-!p1@RORA!1.03!51.18!RORA;;chr12:115122262..115122271,-!p7@TBX3!1.03!9.76!TBX3;;chr2:200322654..200322707,-!p2@SATB2!1.02!13.99!SATB2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.02!9.57!HOXC5;;chr7:27224842..27224872,-!p1@HOXA11!1.01!9.21!HOXA11;;chr5:133450365..133450444,+!p1@TCF7!1.00!41.61!TCF7;;chr8:72756267..72756296,-!p4@MSC!1.00!13.44!MSC;;chr1:170632115..170632136,+!p9@PRRX1!0.99!8.84!PRRX1;;chr3:21792682..21792720,-!p1@ZNF385D!0.97!8.28!ZNF385D;;chr19:13134457..13134462,+!p5@NFIX!0.96!14.91!NFIX;;chr7:27192185..27192209,-!p1@HOXA3!0.95!7.92!HOXA3;;chr21:36260295..36260310,-!p3@RUNX1!0.94!12.70!RUNX1;;chr2:172949484..172949522,+!p1@DLX1!0.94!7.73!DLX1;;chr8:72755987..72756002,-!p7@MSC!0.93!7.55!MSC;;chr12:66218573..66218596,+!p7@HMGA2!0.91!10.86!HMGA2;;chr16:29819403..29819442,+!p5@MAZ!0.90!60.57!MAZ;;chr12:26277956..26277980,-!p1@BHLHE41!0.89!25.41!BHLHE41;;chr8:72756023..72756055,-!p6@MSC!0.89!8.47!MSC;;chr3:21792631..21792665,-!p3@ZNF385D!0.89!6.81!ZNF385D;;chr1:170632647..170632659,+!p17@PRRX1!0.89!6.81!PRRX1;;chr18:22932080..22932170,-!p1@ZNF521!0.88!29.64!ZNF521;;chr12:66218212..66218244,+!p5@HMGA2!0.88!9.76!HMGA2;;chr12:115121962..115121987,-!p1@TBX3!0.87!56.89!TBX3;;chr11:46299199..46299233,+!p1@CREB3L1!0.87!35.16!CREB3L1;;chr19:13134772..13134822,+!p2@NFIX!0.87!9.76!NFIX;;chr8:72756637..72756664,-!p3@MSC!0.87!7.36!MSC;;chr3:157823517..157823562,-!p1@SHOX2!0.87!7.00!SHOX2;;chr7:15726243..15726293,-!p2@MEOX2!0.87!6.44!MEOX2;;chr12:54380404..54380433,+!p3@HOXC10!0.87!6.44!HOXC10;;chr6:34204921..34204939,+!p3@HMGA1!0.85!194.42!HMGA1;;chr14:24837368..24837401,+!p1@NFATC4!0.85!14.91!NFATC4;;chr19:35759824..35759891,+!p1@USF2!0.84!195.15!USF2;;chr12:52445218..52445237,+!p1@NR4A1!0.84!80.45!NR4A1;;chr17:45810594..45810608,+!p1@TBX21!0.84!5.89!TBX21;;chr2:102091144..102091183,-!p2@RFX8!0.84!5.89!RFX8;;chr2:176994408..176994492,+!p1@HOXD8!0.83!5.71!HOXD8;;chr3:147127142..147127168,+!p1@ZIC1!0.83!5.71!ZIC1;;chr10:64018918..64018936,+!p2@ZNF365!0.83!5.71!ZNF365;;chr5:137801160..137801176,+!p1@EGR1!0.82!596.14!EGR1;;chr17:38256822..38256851,-!p1@NR1D1!0.82!47.68!NR1D1;;chr16:86612320..86612394,+!p1@FOXL1!0.81!5.52!FOXL1;;chr12:66218904..66218913,+!p11@HMGA2!0.81!5.52!HMGA2;;chr17:59477233..59477263,+!p1@TBX2!0.80!17.67!TBX2;;chr18:3448455..3448480,+!p5@TGIF1!0.80!10.31!TGIF1;;chr7:27196217..27196246,-!p2@HOXA7!0.80!5.34!HOXA7;;chr7:27224795..27224840,-!p2@HOXA11!0.80!5.34!HOXA11;;chr8:77593750..77593757,+!p3@ZFHX4!0.79!5.15!ZFHX4;;chr1:170632325..170632339,+!p24@PRRX1!0.79!5.15!PRRX1;;chr12:27485823..27485868,+!p2@ARNTL2!0.78!22.28!ARNTL2;;chr12:66218003..66218018,+!p9@HMGA2!0.78!6.26!HMGA2;;chr1:59249645..59249656,-!p4@JUN!0.77!13.07!JUN;;chr12:66218183..66218209,+!p4@HMGA2!0.77!9.94!HMGA2;;chr12:27485762..27485776,+!p3@ARNTL2!0.76!13.62!ARNTL2;;chr15:60884747..60884774,-!p3@RORA!0.76!12.52!RORA;;chr7:14028488..14028516,-!p2@ETV1!0.76!5.34!ETV1;;chr16:86600870..86600921,+!p2@FOXC2!0.76!4.79!FOXC2;;chr2:19558327..19558334,-!p2@OSR1!0.76!4.79!OSR1;;chr11:65686952..65686975,+!p5@DRAP1!0.75!27.98!DRAP1;;chr7:17338324..17338341,+!p3@AHR!0.75!16.75!AHR;;chr7:14029312..14029325,-!p4@ETV1!0.75!5.89!ETV1;;chr2:176969179..176969226,+!p2@HOXD11!0.75!4.60!HOXD11;;chr3:141121820..141121838,+!p9@ZBTB38!0.75!4.60!ZBTB38;;chr3:21792790..21792824,-!p4@ZNF385D!0.75!4.60!ZNF385D;;chr17:46806067..46806097,-!p1@HOXB13!0.75!4.60!HOXB13;;chr1:170632867..170632878,+!p21@PRRX1!0.75!4.60!PRRX1;;chr1:23857698..23857733,-!p1@E2F2!0.74!8.65!E2F2;;chr12:2986275..2986363,-!p1@FOXM1!0.73!49.52!FOXM1;;chr6:106534230..106534254,+!p2@PRDM1!0.73!11.97!PRDM1;;chr5:158526917..158526932,-!p1@EBF1!0.73!11.78!EBF1;;chr12:54402745..54402788,+!p1@HOXC8!0.73!4.42!HOXC8;;chr2:119605214..119605230,-!p1@EN1!0.73!4.42!EN1;;chr17:59477403..59477414,+!p4@TBX2!0.73!4.42!TBX2;;chr7:27135591..27135658,-!p1@HOXA1!0.72!8.65!HOXA1;;chr12:66218378..66218401,+!p6@HMGA2!0.72!7.00!HMGA2;;chr8:72756213..72756243,-!p5@MSC!0.72!5.71!MSC;;chr1:119530493..119530572,-!p1@TBX15!0.72!4.23!TBX15;;chr1:170632414..170632421,+!p28@PRRX1!0.72!4.23!PRRX1;;chr9:77112225..77112238,+!p2@RORB!0.72!4.23!RORB;;chr20:32274179..32274213,-!p1@E2F1!0.70!30.01!E2F1;;chr11:65686802..65686818,+!p6@DRAP1!0.70!7.55!DRAP1;;chr16:29819558..29819572,+!p28@MAZ!0.70!4.05!MAZ;;chr1:170633194..170633205,+!p18@PRRX1!0.69!3.87!PRRX1;;chr7:27213893..27213954,-!p1@HOXA10!0.69!3.87!HOXA10;;chr8:72756380..72756427,-!p8@MSC!0.69!3.87!MSC;;chrY:2803415..2803468,+!p1@ZFY!0.69!3.87!ZFY;;chr19:23433144..23433204,-!p1@ZNF724P!0.68!19.15!ZNF724P;;chr1:158979872..158979898,+!p3@IFI16!0.68!13.07!IFI16;;chr19:31840313..31840380,-!p1@TSHZ3!0.68!10.68!TSHZ3;;chr2:71127699..71127744,+!p1@VAX2!0.68!8.47!VAX2;;chr12:26277929..26277955,-!p3@BHLHE41!0.68!5.71!BHLHE41;;chr1:158985469..158985489,+!p7@IFI16!0.68!4.60!IFI16;;chr5:137804484..137804498,+!p2@EGR1!0.67!16.57!EGR1;;chr9:16870710..16870763,-!p1@BNC2!0.67!6.81!BNC2;;chr11:6947720..6947812,+!p1@ZNF215!0.67!4.97!ZNF215;;chr12:54393880..54393962,+!p1@HOXC9!0.67!3.68!HOXC9;;chr12:66218923..66218934,+!p14@HMGA2!0.67!3.68!HMGA2;;chr16:67198633..67198671,+!p1@HSF4!0.67!3.68!HSF4;;chr19:31840278..31840300,-!p5@TSHZ3!0.67!3.68!TSHZ3;;chr12:96588143..96588185,+!p1@ELK3!0.66!51.18!ELK3;;chr17:46621937..46621966,-!p2@HOXB2!0.66!10.86!HOXB2;;chr2:172967621..172967637,-!p1@DLX2!0.66!10.68!DLX2;;chr2:185463247..185463263,+!p1@ZNF804A!0.66!6.81!ZNF804A;;chr8:72756667..72756736,-!p2@MSC!0.66!5.89!MSC;;chr4:26322267..26322334,+!p3@RBPJ!0.65!9.39!RBPJ;;chr11:65668011..65668020,-!p3@FOSL1!0.65!3.50!FOSL1;;chr12:77459306..77459365,-!p1@E2F7!0.64!49.71!E2F7;;chr5:72744594..72744609,-!p1@FOXD1!0.64!17.86!FOXD1;;chr3:114343768..114343822,-!p1@ZBTB20!0.64!17.12!ZBTB20;;chr6:106534192..106534224,+!p1@PRDM1!0.64!10.68!PRDM1;;chr7:137686552..137686564,-!p9@CREB3L2!0.64!5.34!CREB3L2;;chr5:137804405..137804444,+!p3@EGR1!0.64!4.23!EGR1;;chr21:47063625..47063658,+!p1@PCBP3!0.63!16.39!PCBP3;;chr9:109625401..109625458,+!p1@ZNF462!0.63!9.76!ZNF462;;chr2:200323414..200323455,-!p1@SATB2!0.63!7.73!SATB2;;chr2:45236540..45236577,-!p1@SIX2!0.63!3.31!SIX2;;chr2:74741569..74741620,+!p1@TLX2!0.63!3.31!TLX2;;chr2:85981107..85981120,+!p3@ATOH8!0.63!3.31!ATOH8;;chr19:46801639..46801699,+!p1@HIF3A!0.63!3.31!HIF3A;;chr21:36260980..36261011,-!p1@RUNX1!0.62!108.81!RUNX1;;chr8:49833978..49833996,-!p1@SNAI2!0.62!78.80!SNAI2;;chr3:71114066..71114114,-!p1@FOXP1!0.62!76.59!FOXP1;;chr5:88178983..88179012,-!p1@MEF2C!0.62!28.90!MEF2C;;chr1:164528445..164528459,+!p2@PBX1!0.62!11.41!PBX1;;chr9:102584262..102584276,+!p1@NR4A3!0.62!7.92!NR4A3;;chrY:21906594..21906622,-!p1@KDM5D!0.62!3.13!KDM5D;;chr1:170632583..170632590,+!p26@PRRX1!0.62!3.13!PRRX1;;chr7:17338266..17338282,+!p1@AHR!0.61!40.14!AHR;;chr17:41277372..41277418,-!p1@BRCA1!0.61!13.07!BRCA1;;chr5:134369905..134369972,-!p1@PITX1!0.61!5.15!PITX1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.61!3.31!GLIS1;;chr12:27485785..27485816,+!p1@ARNTL2!0.60!25.04!ARNTL2;;chr12:48298785..48298828,-!p1@VDR!0.60!18.78!VDR;;chr2:74730430..74730451,-!p1@LBX2!0.60!5.34!LBX2;;chr21:36260343..36260402,-!p6@RUNX1!0.60!5.15!RUNX1;;chr5:43067636..43067674,+!p6@ZNF131!0.60!4.23!ZNF131;;chr1:170632907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|sample_dev_stage=
|ffid_belonging_in_development=CL:0000134
|sample_tissue=unclassifiable
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=89
|sample_ethnicity=J
|rna_rin=
|rna_od260/230=2.18
|rna_od260/280=2.14
|sample_cell_type=fibroblast
|sample_cell_line=NMFH-1
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=myxofibrosarcoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=45.12893
|rna_concentration=0.96019
|sample_note=
|profile_hcage=CNhs11821,LSID829,release010,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000014,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0001062,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0002416,UBERON:0003102
|ancestors_in_disease_facet=DOID:0050686,DOID:0050687,DOID:0060100,DOID:1115,DOID:14566,DOID:162,DOID:1907,DOID:201,DOID:4,DOID:4231
|sample_description=
|fonse_cell_line=FF:0100400,FF:0100453
|fonse_cell_line=FF:0100400,FF:0100453
|fonse_cell_line_closure=FF:0100400,FF:0100453
|fonse_cell_line_closure=FF:0100400,FF:0100453
Line 66: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/myxofibrosarcoma%2520cell%2520line%253aNMFH-1.CNhs11821.10684-109E9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/myxofibrosarcoma%2520cell%2520line%253aNMFH-1.CNhs11821.10684-109E9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/myxofibrosarcoma%2520cell%2520line%253aNMFH-1.CNhs11821.10684-109E9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/myxofibrosarcoma%2520cell%2520line%253aNMFH-1.CNhs11821.10684-109E9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/myxofibrosarcoma%2520cell%2520line%253aNMFH-1.CNhs11821.10684-109E9.hg38.nobarcode.ctss.bed.gz
|id=FF:10684-109E9
|is_a=CL:0002620;;DOID:1907;;EFO:0002091;;FF:0000210;;FF:0100460
|is_obsolete=
|library_id=CNhs11821
|library_id_phase_based=2:CNhs11821
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10684
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10684
|name=myxofibrosarcoma cell line:NMFH-1
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11821,LSID829,release010,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=109
|rna_catalog_number=
|rna_concentration=0.96019
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.18
|rna_od260/280=2.14
|rna_position=E9
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=1.09E+11
|rna_weight_ug=45.12893
|sample_age=89
|sample_category=cell lines
|sample_cell_catalog=RCB2346
|sample_cell_line=NMFH-1
|sample_cell_lot=
|sample_cell_type=fibroblast
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=myxofibrosarcoma
|sample_donor(cell lot)=
|sample_ethnicity=J
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.50459721090774e-238!GO:0043231;intracellular membrane-bound organelle;2.68843166220313e-199!GO:0043227;membrane-bound organelle;5.14480619560043e-199!GO:0043226;organelle;2.24608901619062e-197!GO:0043229;intracellular organelle;4.91816054265318e-197!GO:0005737;cytoplasm;5.0495134312022e-166!GO:0044422;organelle part;9.09936218973839e-148!GO:0044446;intracellular organelle part;2.18934296654889e-146!GO:0044444;cytoplasmic part;2.3554544317799e-118!GO:0032991;macromolecular complex;9.44195212022957e-101!GO:0005634;nucleus;1.54343845560759e-90!GO:0044237;cellular metabolic process;2.24019331637818e-90!GO:0044238;primary metabolic process;1.42820077293186e-89!GO:0043170;macromolecule metabolic process;1.36309477912602e-86!GO:0030529;ribonucleoprotein complex;9.84060192569328e-84!GO:0044428;nuclear part;3.1272871333941e-76!GO:0005515;protein binding;1.20523917352383e-75!GO:0043233;organelle lumen;1.24203745021877e-71!GO:0031974;membrane-enclosed lumen;1.24203745021877e-71!GO:0003723;RNA binding;8.67299047675499e-67!GO:0005739;mitochondrion;4.77341000858714e-57!GO:0043283;biopolymer metabolic process;1.26688928685477e-52!GO:0043234;protein complex;1.24922922400729e-51!GO:0006396;RNA processing;1.60467621971159e-51!GO:0016043;cellular component organization and biogenesis;5.09039001036728e-51!GO:0031090;organelle membrane;9.0970983476323e-50!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.96816296551838e-49!GO:0010467;gene expression;3.12604237929051e-47!GO:0006412;translation;3.48289641863817e-47!GO:0005840;ribosome;4.38078692868579e-47!GO:0031981;nuclear lumen;9.70417188054719e-46!GO:0019538;protein metabolic process;4.21258229456589e-45!GO:0015031;protein transport;4.08130079517151e-41!GO:0003735;structural constituent of ribosome;9.83984042522163e-41!GO:0044260;cellular macromolecule metabolic process;1.34369984954179e-40!GO:0016071;mRNA metabolic process;1.49929429220133e-40!GO:0044267;cellular protein metabolic process;3.40090642785671e-40!GO:0033036;macromolecule localization;3.50891442226341e-39!GO:0044429;mitochondrial part;4.25164488398402e-39!GO:0006996;organelle organization and biogenesis;1.12704941590804e-37!GO:0008380;RNA splicing;1.88797834533729e-37!GO:0005829;cytosol;1.9744515485018e-37!GO:0031967;organelle envelope;2.21150334953729e-37!GO:0031975;envelope;5.16458763287064e-37!GO:0045184;establishment of protein localization;5.37343273462495e-37!GO:0044249;cellular biosynthetic process;7.40828632235739e-36!GO:0008104;protein localization;1.68696599244436e-35!GO:0033279;ribosomal subunit;1.69304904772883e-35!GO:0006397;mRNA processing;2.62644100030858e-35!GO:0043228;non-membrane-bound organelle;2.78979028534118e-35!GO:0043232;intracellular non-membrane-bound organelle;2.78979028534118e-35!GO:0006259;DNA metabolic process;6.92826638081678e-35!GO:0009058;biosynthetic process;7.65177468396009e-35!GO:0009059;macromolecule biosynthetic process;4.47311700634287e-34!GO:0046907;intracellular transport;9.34945724801102e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.65870919135369e-31!GO:0065003;macromolecular complex assembly;4.57332986608628e-31!GO:0003676;nucleic acid binding;6.19455569890097e-30!GO:0007049;cell cycle;3.54779870557621e-29!GO:0022607;cellular component assembly;2.3503947161138e-28!GO:0005654;nucleoplasm;3.27399338596865e-28!GO:0006886;intracellular protein transport;4.2514933882689e-27!GO:0005681;spliceosome;3.25081094374648e-26!GO:0005740;mitochondrial envelope;1.51114316427777e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.01700436934051e-25!GO:0031966;mitochondrial membrane;2.60821708684247e-24!GO:0019866;organelle inner membrane;1.09861925204645e-23!GO:0016070;RNA metabolic process;1.21230148811508e-23!GO:0044451;nucleoplasm part;1.33059953852769e-23!GO:0000278;mitotic cell cycle;5.93887370391639e-23!GO:0000166;nucleotide binding;6.4788321875232e-23!GO:0016462;pyrophosphatase activity;1.40914018475278e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.35166076886805e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;2.94747825652823e-22!GO:0022402;cell cycle process;3.54670689947599e-22!GO:0017111;nucleoside-triphosphatase activity;7.25660703499037e-22!GO:0005743;mitochondrial inner membrane;1.55249418270562e-21!GO:0012505;endomembrane system;1.98175990560685e-21!GO:0006119;oxidative phosphorylation;4.44984694621788e-21!GO:0008134;transcription factor binding;8.67012429797087e-21!GO:0051649;establishment of cellular localization;1.68446427239365e-20!GO:0051641;cellular localization;2.01183809281647e-20!GO:0044445;cytosolic part;3.22753263991153e-20!GO:0005694;chromosome;8.82138364461436e-20!GO:0006457;protein folding;3.12698993649757e-19!GO:0015935;small ribosomal subunit;5.15490718051139e-19!GO:0044455;mitochondrial membrane part;6.19179755711962e-19!GO:0022618;protein-RNA complex assembly;1.28498908844021e-18!GO:0044427;chromosomal part;4.23480921007371e-18!GO:0000087;M phase of mitotic cell cycle;8.43261865091834e-18!GO:0007067;mitosis;1.43176474901077e-17!GO:0015934;large ribosomal subunit;1.44338670181186e-17!GO:0022403;cell cycle phase;1.88039426960948e-17!GO:0005730;nucleolus;3.41338048546427e-17!GO:0006974;response to DNA damage stimulus;4.10860752794349e-17!GO:0044432;endoplasmic reticulum part;1.27039489274954e-16!GO:0005783;endoplasmic reticulum;1.47029382736575e-16!GO:0051276;chromosome organization and biogenesis;2.51828313727477e-16!GO:0006512;ubiquitin cycle;2.57668701319724e-16!GO:0048770;pigment granule;2.62493034246375e-16!GO:0042470;melanosome;2.62493034246375e-16!GO:0031980;mitochondrial lumen;2.62493034246375e-16!GO:0005759;mitochondrial matrix;2.62493034246375e-16!GO:0005746;mitochondrial respiratory chain;3.74989861744935e-16!GO:0016874;ligase activity;3.79053098940947e-16!GO:0006260;DNA replication;7.43577958019997e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.93767540138078e-15!GO:0017076;purine nucleotide binding;2.45516965031366e-15!GO:0032553;ribonucleotide binding;2.980096114927e-15!GO:0032555;purine ribonucleotide binding;2.980096114927e-15!GO:0051082;unfolded protein binding;5.96903182493616e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.42945561683061e-15!GO:0000279;M phase;9.73261662911538e-15!GO:0006605;protein targeting;9.82660825872759e-15!GO:0008135;translation factor activity, nucleic acid binding;1.40382921845997e-14!GO:0006281;DNA repair;1.60456049079508e-14!GO:0044265;cellular macromolecule catabolic process;1.71931238134981e-14!GO:0043285;biopolymer catabolic process;1.73121762837849e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.31262474948265e-14!GO:0003954;NADH dehydrogenase activity;2.31262474948265e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.31262474948265e-14!GO:0005524;ATP binding;2.62441931699023e-14!GO:0051301;cell division;2.71068198844179e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;4.38997061729236e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;6.74813225406775e-14!GO:0000375;RNA splicing, via transesterification reactions;6.74813225406775e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.74813225406775e-14!GO:0019941;modification-dependent protein catabolic process;7.4171077296769e-14!GO:0043632;modification-dependent macromolecule catabolic process;7.4171077296769e-14!GO:0005794;Golgi apparatus;8.38222002321378e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);8.41824200055526e-14!GO:0032559;adenyl ribonucleotide binding;8.68172143214362e-14!GO:0005761;mitochondrial ribosome;9.04108532112963e-14!GO:0000313;organellar ribosome;9.04108532112963e-14!GO:0030554;adenyl nucleotide binding;1.056161536737e-13!GO:0051186;cofactor metabolic process;1.08715016329958e-13!GO:0006511;ubiquitin-dependent protein catabolic process;1.16597691337124e-13!GO:0042254;ribosome biogenesis and assembly;1.21122938137197e-13!GO:0044257;cellular protein catabolic process;1.22012737715023e-13!GO:0003712;transcription cofactor activity;1.67570840031773e-13!GO:0009057;macromolecule catabolic process;5.34376886768725e-13!GO:0030163;protein catabolic process;5.62719098599939e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.05772211631689e-12!GO:0042773;ATP synthesis coupled electron transport;1.05772211631689e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.14532866335554e-12!GO:0045271;respiratory chain complex I;1.14532866335554e-12!GO:0005747;mitochondrial respiratory chain complex I;1.14532866335554e-12!GO:0005635;nuclear envelope;1.24677901393602e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;1.24712600534139e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.54150564455446e-12!GO:0009719;response to endogenous stimulus;1.72658770872982e-12!GO:0016887;ATPase activity;3.3500420821095e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.76945835302245e-12!GO:0048193;Golgi vesicle transport;4.04019132482925e-12!GO:0016192;vesicle-mediated transport;4.82706843372272e-12!GO:0006323;DNA packaging;5.05394005064116e-12!GO:0005789;endoplasmic reticulum membrane;5.58427930289743e-12!GO:0031965;nuclear membrane;5.90828767779515e-12!GO:0044453;nuclear membrane part;6.25105684655132e-12!GO:0003743;translation initiation factor activity;7.91115921120009e-12!GO:0042623;ATPase activity, coupled;1.11256593622718e-11!GO:0005793;ER-Golgi intermediate compartment;1.16877369724564e-11!GO:0006366;transcription from RNA polymerase II promoter;1.48855842652717e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.48855842652717e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.84679563293765e-11!GO:0006413;translational initiation;1.8504384748428e-11!GO:0043412;biopolymer modification;2.21854441690019e-11!GO:0044248;cellular catabolic process;2.25299466815389e-11!GO:0016604;nuclear body;2.60915709881978e-11!GO:0006913;nucleocytoplasmic transport;3.15871183923944e-11!GO:0051726;regulation of cell cycle;4.60304268356162e-11!GO:0000074;regulation of progression through cell cycle;4.64753192516678e-11!GO:0051169;nuclear transport;6.63642441084093e-11!GO:0006732;coenzyme metabolic process;1.23779566686885e-10!GO:0006446;regulation of translational initiation;2.0943233459868e-10!GO:0006399;tRNA metabolic process;2.18440491000288e-10!GO:0004386;helicase activity;3.60578473120858e-10!GO:0015630;microtubule cytoskeleton;5.61211797287064e-10!GO:0065004;protein-DNA complex assembly;6.04670619530489e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.86322603613044e-10!GO:0050794;regulation of cellular process;1.20192560839669e-09!GO:0006464;protein modification process;1.48506601723752e-09!GO:0009259;ribonucleotide metabolic process;1.49267471298416e-09!GO:0005643;nuclear pore;1.63801416584021e-09!GO:0000785;chromatin;2.79283487485132e-09!GO:0006163;purine nucleotide metabolic process;2.96081409756488e-09!GO:0008026;ATP-dependent helicase activity;4.04271694621754e-09!GO:0016607;nuclear speck;4.19524871591613e-09!GO:0006403;RNA localization;4.66952336934033e-09!GO:0050657;nucleic acid transport;4.93289873255432e-09!GO:0051236;establishment of RNA localization;4.93289873255432e-09!GO:0050658;RNA transport;4.93289873255432e-09!GO:0008639;small protein conjugating enzyme activity;5.14342403852119e-09!GO:0006333;chromatin assembly or disassembly;5.61365201984922e-09!GO:0048523;negative regulation of cellular process;6.77284699674082e-09!GO:0009150;purine ribonucleotide metabolic process;8.02252341962174e-09!GO:0006364;rRNA processing;9.12464208045663e-09!GO:0031324;negative regulation of cellular metabolic process;9.6612604616396e-09!GO:0017038;protein import;1.04614843446591e-08!GO:0004842;ubiquitin-protein ligase activity;1.33790411577322e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.46899404785238e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.46899404785238e-08!GO:0043687;post-translational protein modification;1.52010329921127e-08!GO:0009260;ribonucleotide biosynthetic process;1.56211433149695e-08!GO:0006164;purine nucleotide biosynthetic process;1.66847846945021e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.7153946052271e-08!GO:0016072;rRNA metabolic process;1.94764531428528e-08!GO:0065002;intracellular protein transport across a membrane;2.12006813755504e-08!GO:0008565;protein transporter activity;2.62632902757564e-08!GO:0009141;nucleoside triphosphate metabolic process;2.76147792425805e-08!GO:0019829;cation-transporting ATPase activity;3.00954499790498e-08!GO:0005768;endosome;3.01873931519662e-08!GO:0019787;small conjugating protein ligase activity;3.18191665061376e-08!GO:0046930;pore complex;3.21051894667022e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.21051894667022e-08!GO:0004812;aminoacyl-tRNA ligase activity;3.21051894667022e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.21051894667022e-08!GO:0043566;structure-specific DNA binding;3.38577177794508e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.56935397888404e-08!GO:0012501;programmed cell death;3.9080002816727e-08!GO:0009152;purine ribonucleotide biosynthetic process;4.38332143564797e-08!GO:0009055;electron carrier activity;4.70310103949546e-08!GO:0000775;chromosome, pericentric region;5.28841306590807e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.31314352277342e-08!GO:0009144;purine nucleoside triphosphate metabolic process;6.31314352277342e-08!GO:0045333;cellular respiration;6.34836713905709e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.57807489247147e-08!GO:0009060;aerobic respiration;6.60351926508992e-08!GO:0006915;apoptosis;6.60351926508992e-08!GO:0015986;ATP synthesis coupled proton transport;6.85336807093498e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.85336807093498e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.41659494769243e-08!GO:0044440;endosomal part;7.891130334087e-08!GO:0010008;endosome membrane;7.891130334087e-08!GO:0043038;amino acid activation;8.13333615962763e-08!GO:0006418;tRNA aminoacylation for protein translation;8.13333615962763e-08!GO:0043039;tRNA aminoacylation;8.13333615962763e-08!GO:0016564;transcription repressor activity;9.23099166263403e-08!GO:0006461;protein complex assembly;9.23099166263403e-08!GO:0005667;transcription factor complex;9.53909253905409e-08!GO:0009892;negative regulation of metabolic process;1.20144170133113e-07!GO:0046034;ATP metabolic process;1.23665968598966e-07!GO:0016881;acid-amino acid ligase activity;1.44098390813026e-07!GO:0016563;transcription activator activity;1.78546139315024e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.83437463567117e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.1459249091287e-07!GO:0016568;chromatin modification;2.36624010073772e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.42172057748932e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.42172057748932e-07!GO:0003924;GTPase activity;2.43607170016455e-07!GO:0005819;spindle;2.60102410672624e-07!GO:0051028;mRNA transport;2.60140324904863e-07!GO:0051188;cofactor biosynthetic process;2.61088677743062e-07!GO:0005813;centrosome;3.18908115002517e-07!GO:0008219;cell death;3.20547867759863e-07!GO:0016265;death;3.20547867759863e-07!GO:0000245;spliceosome assembly;3.23335246717863e-07!GO:0051246;regulation of protein metabolic process;3.36119709153964e-07!GO:0007051;spindle organization and biogenesis;3.64458237922259e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.3391960899806e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.3391960899806e-07!GO:0048519;negative regulation of biological process;4.74518214331609e-07!GO:0006334;nucleosome assembly;5.61117607608844e-07!GO:0003697;single-stranded DNA binding;5.72905023746199e-07!GO:0019222;regulation of metabolic process;5.85762760778398e-07!GO:0016779;nucleotidyltransferase activity;6.35949032478061e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.36601409454164e-07!GO:0031497;chromatin assembly;6.4893201672314e-07!GO:0003713;transcription coactivator activity;7.17267805158639e-07!GO:0003714;transcription corepressor activity;7.41453431034385e-07!GO:0006754;ATP biosynthetic process;7.41453431034385e-07!GO:0006753;nucleoside phosphate metabolic process;7.41453431034385e-07!GO:0016469;proton-transporting two-sector ATPase complex;8.94268517539733e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.3756416192469e-07!GO:0044431;Golgi apparatus part;9.39432581080947e-07!GO:0009056;catabolic process;1.03942959658293e-06!GO:0006261;DNA-dependent DNA replication;1.06475705085399e-06!GO:0048475;coated membrane;1.13796427994768e-06!GO:0030117;membrane coat;1.13796427994768e-06!GO:0005770;late endosome;1.13796427994768e-06!GO:0005815;microtubule organizing center;1.23160517084792e-06!GO:0016481;negative regulation of transcription;1.50833597800309e-06!GO:0009117;nucleotide metabolic process;1.63256222936569e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.76327820113714e-06!GO:0030120;vesicle coat;1.97369631119031e-06!GO:0030662;coated vesicle membrane;1.97369631119031e-06!GO:0005788;endoplasmic reticulum lumen;1.97763280261387e-06!GO:0016787;hydrolase activity;2.86378563386241e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.88187858794921e-06!GO:0051329;interphase of mitotic cell cycle;2.93165770555779e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.06238336742775e-06!GO:0045259;proton-transporting ATP synthase complex;3.63525651776677e-06!GO:0006099;tricarboxylic acid cycle;4.06574267765237e-06!GO:0046356;acetyl-CoA catabolic process;4.06574267765237e-06!GO:0009108;coenzyme biosynthetic process;5.05395188455235e-06!GO:0016740;transferase activity;6.12223173817586e-06!GO:0051170;nuclear import;6.28260158379142e-06!GO:0005773;vacuole;7.14231322778089e-06!GO:0000151;ubiquitin ligase complex;7.52581943315962e-06!GO:0006606;protein import into nucleus;7.81984152582274e-06!GO:0003724;RNA helicase activity;8.70076407571504e-06!GO:0007005;mitochondrion organization and biogenesis;9.00199113913761e-06!GO:0005762;mitochondrial large ribosomal subunit;9.10590411676348e-06!GO:0000315;organellar large ribosomal subunit;9.10590411676348e-06!GO:0005657;replication fork;9.20046065170288e-06!GO:0051325;interphase;1.03732642815473e-05!GO:0050789;regulation of biological process;1.13554046457514e-05!GO:0000075;cell cycle checkpoint;1.20239398701061e-05!GO:0006084;acetyl-CoA metabolic process;1.27996192131505e-05!GO:0007010;cytoskeleton organization and biogenesis;1.56347222890631e-05!GO:0051427;hormone receptor binding;1.68104438875124e-05!GO:0051187;cofactor catabolic process;1.71553120443152e-05!GO:0042981;regulation of apoptosis;1.71553120443152e-05!GO:0043067;regulation of programmed cell death;1.750653921579e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.76353499280266e-05!GO:0006916;anti-apoptosis;1.84330926707938e-05!GO:0004298;threonine endopeptidase activity;2.07574639770791e-05!GO:0005769;early endosome;2.21497835200055e-05!GO:0043069;negative regulation of programmed cell death;2.22790274839963e-05!GO:0006793;phosphorus metabolic process;2.22790274839963e-05!GO:0006796;phosphate metabolic process;2.22790274839963e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.27769811274337e-05!GO:0043623;cellular protein complex assembly;2.35776664835012e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.44094549529177e-05!GO:0009109;coenzyme catabolic process;2.47842885661006e-05!GO:0032446;protein modification by small protein conjugation;2.60297325419122e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.76174703625797e-05!GO:0043066;negative regulation of apoptosis;2.86043467295707e-05!GO:0000323;lytic vacuole;3.5644577565006e-05!GO:0005764;lysosome;3.5644577565006e-05!GO:0035257;nuclear hormone receptor binding;3.72392636109578e-05!GO:0045786;negative regulation of progression through cell cycle;3.80494681739694e-05!GO:0006613;cotranslational protein targeting to membrane;3.81908083706237e-05!GO:0016567;protein ubiquitination;3.95958231046083e-05!GO:0019867;outer membrane;4.10423204440239e-05!GO:0003899;DNA-directed RNA polymerase activity;4.7599715363555e-05!GO:0005798;Golgi-associated vesicle;4.89266987780465e-05!GO:0016491;oxidoreductase activity;5.29394765343717e-05!GO:0016310;phosphorylation;5.52938894344379e-05!GO:0000139;Golgi membrane;5.71598326775606e-05!GO:0008654;phospholipid biosynthetic process;6.33102682618328e-05!GO:0016023;cytoplasmic membrane-bound vesicle;6.52696090508895e-05!GO:0051168;nuclear export;6.89710051022652e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.98937160554351e-05!GO:0031988;membrane-bound vesicle;7.29519946263944e-05!GO:0016853;isomerase activity;7.43372659061261e-05!GO:0031968;organelle outer membrane;7.49733240429288e-05!GO:0005048;signal sequence binding;7.60551451138435e-05!GO:0031252;leading edge;8.01912467030391e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;8.14016608607027e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;8.75388804612018e-05!GO:0031323;regulation of cellular metabolic process;8.77634687299771e-05!GO:0006091;generation of precursor metabolites and energy;8.92832931637775e-05!GO:0000314;organellar small ribosomal subunit;9.24972009006432e-05!GO:0005763;mitochondrial small ribosomal subunit;9.24972009006432e-05!GO:0006752;group transfer coenzyme metabolic process;9.32086237173075e-05!GO:0008094;DNA-dependent ATPase activity;9.5886444334655e-05!GO:0008361;regulation of cell size;9.68952210272526e-05!GO:0051789;response to protein stimulus;0.000111595504168209!GO:0006986;response to unfolded protein;0.000111595504168209!GO:0019843;rRNA binding;0.000124855358125094!GO:0016859;cis-trans isomerase activity;0.000135906650078332!GO:0008186;RNA-dependent ATPase activity;0.00013767731161912!GO:0016049;cell growth;0.000143341463007577!GO:0006350;transcription;0.000152762339356882!GO:0015980;energy derivation by oxidation of organic compounds;0.000160042393477987!GO:0019899;enzyme binding;0.00018574717746184!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000199151645297886!GO:0005741;mitochondrial outer membrane;0.000245367193817086!GO:0000082;G1/S transition of mitotic cell cycle;0.000259238003085269!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000268179608288843!GO:0007059;chromosome segregation;0.000268179608288843!GO:0000776;kinetochore;0.000268316509880147!GO:0006302;double-strand break repair;0.000271694982842099!GO:0003729;mRNA binding;0.000275362929528913!GO:0030867;rough endoplasmic reticulum membrane;0.000286582366095778!GO:0033116;ER-Golgi intermediate compartment membrane;0.000309776339248789!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00033203996655456!GO:0001558;regulation of cell growth;0.000334657415632649!GO:0031982;vesicle;0.000334670454086451!GO:0031410;cytoplasmic vesicle;0.000356127727125859!GO:0006612;protein targeting to membrane;0.000362726220280217!GO:0004004;ATP-dependent RNA helicase activity;0.000395834324138723!GO:0045941;positive regulation of transcription;0.000422536360560087!GO:0030036;actin cytoskeleton organization and biogenesis;0.000429400526470839!GO:0005525;GTP binding;0.000486478992229336!GO:0003690;double-stranded DNA binding;0.000535499030021807!GO:0009165;nucleotide biosynthetic process;0.000538531393068186!GO:0045892;negative regulation of transcription, DNA-dependent;0.000596805303032396!GO:0005885;Arp2/3 protein complex;0.000629296198906026!GO:0006402;mRNA catabolic process;0.000631221525930601!GO:0048522;positive regulation of cellular process;0.000640503521734661!GO:0008033;tRNA processing;0.000641333642130918!GO:0051252;regulation of RNA metabolic process;0.000664093372773642!GO:0000786;nucleosome;0.000683265816633922!GO:0005874;microtubule;0.000705746899277031!GO:0007088;regulation of mitosis;0.00070836598570902!GO:0043021;ribonucleoprotein binding;0.000734867692173246!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000738896348322665!GO:0043681;protein import into mitochondrion;0.000765318481951439!GO:0031902;late endosome membrane;0.0008198162729189!GO:0045893;positive regulation of transcription, DNA-dependent;0.000852828230817835!GO:0006626;protein targeting to mitochondrion;0.000856049016269327!GO:0007052;mitotic spindle organization and biogenesis;0.000860168549330995!GO:0022890;inorganic cation transmembrane transporter activity;0.000860168549330995!GO:0030880;RNA polymerase complex;0.000898198911687737!GO:0005905;coated pit;0.000932988693184905!GO:0043488;regulation of mRNA stability;0.000955737843074032!GO:0043487;regulation of RNA stability;0.000955737843074032!GO:0045454;cell redox homeostasis;0.000980592736876487!GO:0007243;protein kinase cascade;0.00103994534671719!GO:0006352;transcription initiation;0.00111304068510373!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00115391856614943!GO:0003682;chromatin binding;0.0011572579249621!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00125357208514463!GO:0046474;glycerophospholipid biosynthetic process;0.00126869632379658!GO:0035258;steroid hormone receptor binding;0.0012792792577123!GO:0007017;microtubule-based process;0.0012964820238196!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00138157251515323!GO:0051052;regulation of DNA metabolic process;0.00140701852332366!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00146368435446644!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00159973200004299!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00159973200004299!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00159973200004299!GO:0010468;regulation of gene expression;0.00162107654910839!GO:0030663;COPI coated vesicle membrane;0.00163553849212776!GO:0030126;COPI vesicle coat;0.00163553849212776!GO:0031072;heat shock protein binding;0.00163760681984146!GO:0016272;prefoldin complex;0.00170899511718618!GO:0030029;actin filament-based process;0.00175690592568801!GO:0005684;U2-dependent spliceosome;0.00181604112022238!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00209368531092975!GO:0000428;DNA-directed RNA polymerase complex;0.00209368531092975!GO:0000059;protein import into nucleus, docking;0.00211093126091256!GO:0030137;COPI-coated vesicle;0.00211382112297436!GO:0030133;transport vesicle;0.00215415692080782!GO:0015631;tubulin binding;0.00221572363711143!GO:0044452;nucleolar part;0.0022571201423321!GO:0032561;guanyl ribonucleotide binding;0.00230218855932944!GO:0019001;guanyl nucleotide binding;0.00230218855932944!GO:0006401;RNA catabolic process;0.00232263433436032!GO:0042802;identical protein binding;0.00245861359274148!GO:0016363;nuclear matrix;0.00248821213602435!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00248994604900897!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00248994604900897!GO:0015399;primary active transmembrane transporter activity;0.00248994604900897!GO:0030521;androgen receptor signaling pathway;0.00282285883922146!GO:0003678;DNA helicase activity;0.00289408497897853!GO:0004674;protein serine/threonine kinase activity;0.00302080981193772!GO:0032508;DNA duplex unwinding;0.00320764978107174!GO:0032392;DNA geometric change;0.00320764978107174!GO:0043624;cellular protein complex disassembly;0.00322561330239634!GO:0065009;regulation of a molecular function;0.00325128582075552!GO:0005637;nuclear inner membrane;0.00332345648215642!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00337571865326118!GO:0015002;heme-copper terminal oxidase activity;0.00337571865326118!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00337571865326118!GO:0004129;cytochrome-c oxidase activity;0.00337571865326118!GO:0043284;biopolymer biosynthetic process;0.00343866112700617!GO:0006950;response to stress;0.00343866112700617!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00347073814347078!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00347073814347078!GO:0046489;phosphoinositide biosynthetic process;0.00359022189226963!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00367500520408072!GO:0048500;signal recognition particle;0.00372964031457569!GO:0008139;nuclear localization sequence binding;0.00379094357385597!GO:0030176;integral to endoplasmic reticulum membrane;0.00380027796808587!GO:0006414;translational elongation;0.00387445310456954!GO:0006818;hydrogen transport;0.00387445310456954!GO:0016741;transferase activity, transferring one-carbon groups;0.00389247332198333!GO:0006595;polyamine metabolic process;0.00393748726364586!GO:0006383;transcription from RNA polymerase III promoter;0.00398806257112059!GO:0004527;exonuclease activity;0.00402924960771942!GO:0048487;beta-tubulin binding;0.00403207477750661!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00407365857313217!GO:0015992;proton transport;0.00409859980368081!GO:0016197;endosome transport;0.0041702745798559!GO:0008168;methyltransferase activity;0.00419648283261248!GO:0007093;mitotic cell cycle checkpoint;0.00419816153604944!GO:0043596;nuclear replication fork;0.00422165874701054!GO:0048471;perinuclear region of cytoplasm;0.00447907578439453!GO:0032774;RNA biosynthetic process;0.00454004556305395!GO:0065007;biological regulation;0.00480440820607723!GO:0030518;steroid hormone receptor signaling pathway;0.00490784210312864!GO:0006611;protein export from nucleus;0.00497344565885426!GO:0032984;macromolecular complex disassembly;0.00504652520275199!GO:0003684;damaged DNA binding;0.00505085611071174!GO:0043241;protein complex disassembly;0.00514032686247763!GO:0006351;transcription, DNA-dependent;0.00515117784438931!GO:0006310;DNA recombination;0.00530303090547847!GO:0005876;spindle microtubule;0.00532006407335361!GO:0006268;DNA unwinding during replication;0.00532006407335361!GO:0016251;general RNA polymerase II transcription factor activity;0.0053821236101255!GO:0007040;lysosome organization and biogenesis;0.00540482730041417!GO:0030132;clathrin coat of coated pit;0.00599975268083677!GO:0051087;chaperone binding;0.00616693354542165!GO:0006405;RNA export from nucleus;0.0062886481649827!GO:0043433;negative regulation of transcription factor activity;0.00640541940071176!GO:0030134;ER to Golgi transport vesicle;0.0065046758760771!GO:0044262;cellular carbohydrate metabolic process;0.00654305206535136!GO:0046467;membrane lipid biosynthetic process;0.00666644677617779!GO:0003702;RNA polymerase II transcription factor activity;0.00715239135814854!GO:0006275;regulation of DNA replication;0.0071805095758235!GO:0051287;NAD binding;0.00750293269572376!GO:0040008;regulation of growth;0.00759754708141111!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00779663722210947!GO:0051539;4 iron, 4 sulfur cluster binding;0.00788458929878331!GO:0019206;nucleoside kinase activity;0.00796511850894519!GO:0007033;vacuole organization and biogenesis;0.00796511850894519!GO:0031124;mRNA 3'-end processing;0.00796849425559031!GO:0006891;intra-Golgi vesicle-mediated transport;0.00845847121005316!GO:0030118;clathrin coat;0.00861549865234033!GO:0004177;aminopeptidase activity;0.00886786138370074!GO:0030027;lamellipodium;0.00890158463330211!GO:0008180;signalosome;0.00904756322140431!GO:0030127;COPII vesicle coat;0.00910475412673882!GO:0012507;ER to Golgi transport vesicle membrane;0.00910475412673882!GO:0000922;spindle pole;0.00910941839446031!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00944827112680188!GO:0031901;early endosome membrane;0.010069404762648!GO:0006270;DNA replication initiation;0.0100780319907649!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0108436350669946!GO:0007021;tubulin folding;0.0110542060832362!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0112443143121466!GO:0045047;protein targeting to ER;0.0112443143121466!GO:0017166;vinculin binding;0.0113234105070678!GO:0050681;androgen receptor binding;0.0115701825299453!GO:0046519;sphingoid metabolic process;0.011808752073973!GO:0050662;coenzyme binding;0.011809180964325!GO:0033673;negative regulation of kinase activity;0.0118375857869015!GO:0006469;negative regulation of protein kinase activity;0.0118375857869015!GO:0045449;regulation of transcription;0.0119326667855443!GO:0005791;rough endoplasmic reticulum;0.0121860489346148!GO:0051540;metal cluster binding;0.0123077608266775!GO:0051536;iron-sulfur cluster binding;0.0123077608266775!GO:0051128;regulation of cellular component organization and biogenesis;0.0123769943057281!GO:0030658;transport vesicle membrane;0.0129607922224768!GO:0007050;cell cycle arrest;0.0136301268342666!GO:0005832;chaperonin-containing T-complex;0.0140536163470591!GO:0043601;nuclear replisome;0.014143890353055!GO:0030894;replisome;0.014143890353055!GO:0008312;7S RNA binding;0.0141489079119159!GO:0006376;mRNA splice site selection;0.014398925674605!GO:0000389;nuclear mRNA 3'-splice site recognition;0.014398925674605!GO:0008047;enzyme activator activity;0.0145102498305993!GO:0006839;mitochondrial transport;0.0147519324499923!GO:0008017;microtubule binding;0.0153024672754257!GO:0000118;histone deacetylase complex;0.0153523347847604!GO:0000049;tRNA binding;0.0154862410134791!GO:0051348;negative regulation of transferase activity;0.0155137398466718!GO:0051920;peroxiredoxin activity;0.0161536855190459!GO:0022415;viral reproductive process;0.0164356175394226!GO:0005774;vacuolar membrane;0.0164562530431112!GO:0001726;ruffle;0.0169848951097846!GO:0043492;ATPase activity, coupled to movement of substances;0.0169902737385905!GO:0051059;NF-kappaB binding;0.017497209196059!GO:0000152;nuclear ubiquitin ligase complex;0.017497209196059!GO:0003711;transcription elongation regulator activity;0.0184906843143535!GO:0008250;oligosaccharyl transferase complex;0.0191607732436357!GO:0005680;anaphase-promoting complex;0.0192349145789313!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0194404604307888!GO:0006509;membrane protein ectodomain proteolysis;0.0195249805778417!GO:0033619;membrane protein proteolysis;0.0195249805778417!GO:0030659;cytoplasmic vesicle membrane;0.0195262079894466!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0195421771011061!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0196198608824402!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0201798820320849!GO:0030522;intracellular receptor-mediated signaling pathway;0.0206177262218768!GO:0045936;negative regulation of phosphate metabolic process;0.0206930131602367!GO:0008243;plasminogen activator activity;0.0208110098960226!GO:0009116;nucleoside metabolic process;0.0208845162270408!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0211687716701336!GO:0048146;positive regulation of fibroblast proliferation;0.0212546821905931!GO:0007030;Golgi organization and biogenesis;0.0213890300613606!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0214580751022486!GO:0016044;membrane organization and biogenesis;0.0215054821872319!GO:0008092;cytoskeletal protein binding;0.0220259487002324!GO:0043414;biopolymer methylation;0.0220877926128146!GO:0006650;glycerophospholipid metabolic process;0.0221358952490305!GO:0030041;actin filament polymerization;0.0224062375502212!GO:0030433;ER-associated protein catabolic process;0.0225711952242003!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0225711952242003!GO:0006740;NADPH regeneration;0.0225740078277579!GO:0006098;pentose-phosphate shunt;0.0225740078277579!GO:0007346;regulation of progression through mitotic cell cycle;0.0230835246511671!GO:0043022;ribosome binding;0.0231746976250908!GO:0005869;dynactin complex;0.0235039991412224!GO:0008154;actin polymerization and/or depolymerization;0.0236145850428194!GO:0006672;ceramide metabolic process;0.0238721953630346!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0241601020805369!GO:0045045;secretory pathway;0.0244984662211136!GO:0031570;DNA integrity checkpoint;0.0245305103879052!GO:0032200;telomere organization and biogenesis;0.024928794058453!GO:0000723;telomere maintenance;0.024928794058453!GO:0005096;GTPase activator activity;0.0251021301786498!GO:0003746;translation elongation factor activity;0.0251252266371607!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0252664435520369!GO:0046483;heterocycle metabolic process;0.025489741203289!GO:0008538;proteasome activator activity;0.026319626263133!GO:0008022;protein C-terminus binding;0.026338626716452!GO:0006417;regulation of translation;0.026338626716452!GO:0006338;chromatin remodeling;0.0264552407906953!GO:0030865;cortical cytoskeleton organization and biogenesis;0.026730846978666!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0269903065708783!GO:0032259;methylation;0.0272996000925619!GO:0006506;GPI anchor biosynthetic process;0.0273053507837732!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0273053507837732!GO:0048144;fibroblast proliferation;0.0276272452947833!GO:0048145;regulation of fibroblast proliferation;0.0276272452947833!GO:0030660;Golgi-associated vesicle membrane;0.0288918224898349!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0289652516403624!GO:0009893;positive regulation of metabolic process;0.0290402429021878!GO:0044433;cytoplasmic vesicle part;0.0291960765251648!GO:0007034;vacuolar transport;0.0295829058728355!GO:0005669;transcription factor TFIID complex;0.0295829058728355!GO:0031123;RNA 3'-end processing;0.0298601013836061!GO:0000819;sister chromatid segregation;0.0299957375152004!GO:0030508;thiol-disulfide exchange intermediate activity;0.0302964442577885!GO:0003677;DNA binding;0.0303269166884658!GO:0043189;H4/H2A histone acetyltransferase complex;0.0303575549615455!GO:0031625;ubiquitin protein ligase binding;0.0309954322886788!GO:0031529;ruffle organization and biogenesis;0.0317375119939921!GO:0006354;RNA elongation;0.0318014298496385!GO:0004518;nuclease activity;0.0322913905772078!GO:0046128;purine ribonucleoside metabolic process;0.0333035176288228!GO:0042278;purine nucleoside metabolic process;0.0333035176288228!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0333035176288228!GO:0006505;GPI anchor metabolic process;0.0336153838429306!GO:0044437;vacuolar part;0.0336153838429306!GO:0006220;pyrimidine nucleotide metabolic process;0.0336153838429306!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0337867045761949!GO:0022411;cellular component disassembly;0.0340885022241543!GO:0046966;thyroid hormone receptor binding;0.0342316214142405!GO:0004576;oligosaccharyl transferase activity;0.0348537277730678!GO:0030119;AP-type membrane coat adaptor complex;0.0348842347740678!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0351941168238238!GO:0048518;positive regulation of biological process;0.0352233654487177!GO:0042326;negative regulation of phosphorylation;0.0356213297778255!GO:0031326;regulation of cellular biosynthetic process;0.0357238450351935!GO:0022408;negative regulation of cell-cell adhesion;0.0359715710480037!GO:0006497;protein amino acid lipidation;0.0359773460628766!GO:0009451;RNA modification;0.0360180340586989!GO:0051101;regulation of DNA binding;0.0360180340586989!GO:0005875;microtubule associated complex;0.0361267105376547!GO:0019752;carboxylic acid metabolic process;0.0363103932759459!GO:0009889;regulation of biosynthetic process;0.0368097388454296!GO:0005652;nuclear lamina;0.0370612883206907!GO:0008610;lipid biosynthetic process;0.0372580751000833!GO:0035035;histone acetyltransferase binding;0.0374726836655217!GO:0046426;negative regulation of JAK-STAT cascade;0.0378095242752091!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.038013760289345!GO:0000070;mitotic sister chromatid segregation;0.0384148405773741!GO:0009112;nucleobase metabolic process;0.0394161487434477!GO:0018196;peptidyl-asparagine modification;0.0394345877695899!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0394345877695899!GO:0004003;ATP-dependent DNA helicase activity;0.0395240349670572!GO:0005765;lysosomal membrane;0.0399378342497953!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0399378342497953!GO:0000725;recombinational repair;0.0399815606504683!GO:0000724;double-strand break repair via homologous recombination;0.0399815606504683!GO:0004523;ribonuclease H activity;0.0399815606504683!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0401980948023842!GO:0010257;NADH dehydrogenase complex assembly;0.0401980948023842!GO:0033108;mitochondrial respiratory chain complex assembly;0.0401980948023842!GO:0000339;RNA cap binding;0.0404129169135115!GO:0006378;mRNA polyadenylation;0.0409631786870345!GO:0007006;mitochondrial membrane organization and biogenesis;0.0417519863885982!GO:0000910;cytokinesis;0.0422743576031874!GO:0051098;regulation of binding;0.0423001054364872!GO:0030384;phosphoinositide metabolic process;0.0428280608061277!GO:0004228;gelatinase A activity;0.0429109635234795!GO:0001955;blood vessel maturation;0.0429109635234795!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0429109635234795!GO:0000781;chromosome, telomeric region;0.0437247115620506!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0438339334386358!GO:0001953;negative regulation of cell-matrix adhesion;0.0443214448588448!GO:0000096;sulfur amino acid metabolic process;0.0443220087333048!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0451007370804957!GO:0000792;heterochromatin;0.0451846104961863!GO:0006082;organic acid metabolic process;0.0452719506237276!GO:0031577;spindle checkpoint;0.0459206471357215!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0462087729455228!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0462087729455228!GO:0030149;sphingolipid catabolic process;0.0462087729455228!GO:0009124;nucleoside monophosphate biosynthetic process;0.0462087729455228!GO:0009123;nucleoside monophosphate metabolic process;0.0462087729455228!GO:0005521;lamin binding;0.0472271991678374!GO:0006118;electron transport;0.0472271991678374!GO:0006607;NLS-bearing substrate import into nucleus;0.0473771282983805!GO:0006984;ER-nuclear signaling pathway;0.0473898284286571!GO:0030833;regulation of actin filament polymerization;0.0475186531346273!GO:0030032;lamellipodium biogenesis;0.0475186531346273!GO:0046983;protein dimerization activity;0.0475284908241824!GO:0045792;negative regulation of cell size;0.0475510624787925!GO:0030503;regulation of cell redox homeostasis;0.0482137582990542!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0488659883113714!GO:0016581;NuRD complex;0.0493460727759806!GO:0051053;negative regulation of DNA metabolic process;0.0494801585157229!GO:0006778;porphyrin metabolic process;0.049692598276305!GO:0033013;tetrapyrrole metabolic process;0.049692598276305!GO:0000123;histone acetyltransferase complex;0.0497031219985357!GO:0035267;NuA4 histone acetyltransferase complex;0.0499313996604555
|sample_id=10684
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=unclassifiable
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|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10684-109E9;search_select_hide=table117:FF:10684-109E9
}}
}}

Latest revision as of 14:32, 3 June 2020

Name:myxofibrosarcoma cell line:NMFH-1
Species:Human (Homo sapiens)
Library ID:CNhs11821
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueunclassifiable
dev stageNA
sexmale
age89
cell typefibroblast
cell lineNMFH-1
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005282
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11821 CAGE DRX007959 DRR008831
Accession ID Hg19

Library idBAMCTSS
CNhs11821 DRZ000256 DRZ001641
Accession ID Hg38

Library idBAMCTSS
CNhs11821 DRZ011606 DRZ012991
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.053
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.443
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0734
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0145
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0594
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.191
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.16
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.142
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.28
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0349
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0299
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.00449
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.487
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.14
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.111
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.136
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.136
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0971
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11821

Jaspar motifP-value
MA0002.20.0357
MA0003.10.058
MA0004.10.056
MA0006.10.433
MA0007.10.608
MA0009.10.386
MA0014.10.345
MA0017.10.0294
MA0018.20.441
MA0019.10.991
MA0024.13.8554e-5
MA0025.10.247
MA0027.10.35
MA0028.13.72638e-4
MA0029.10.84
MA0030.10.891
MA0031.10.667
MA0035.20.219
MA0038.10.00224
MA0039.20.224
MA0040.10.999
MA0041.10.204
MA0042.10.525
MA0043.10.27
MA0046.10.524
MA0047.20.638
MA0048.10.298
MA0050.10.394
MA0051.10.628
MA0052.10.354
MA0055.10.311
MA0057.10.678
MA0058.10.00166
MA0059.10.194
MA0060.11.77933e-8
MA0061.10.0031
MA0062.24.45845e-4
MA0065.21.90797e-4
MA0066.10.357
MA0067.10.033
MA0068.10.148
MA0069.10.682
MA0070.10.202
MA0071.10.45
MA0072.10.94
MA0073.10.253
MA0074.10.565
MA0076.14.85791e-5
MA0077.10.228
MA0078.10.111
MA0079.20.876
MA0080.21.61679e-9
MA0081.10.207
MA0083.10.673
MA0084.10.993
MA0087.10.325
MA0088.10.163
MA0090.10.737
MA0091.10.184
MA0092.10.562
MA0093.10.0214
MA0099.23.83199e-10
MA0100.10.0652
MA0101.10.642
MA0102.20.676
MA0103.16.23554e-6
MA0104.20.0796
MA0105.10.00257
MA0106.10.917
MA0107.10.138
MA0108.20.452
MA0111.10.387
MA0112.20.00183
MA0113.10.184
MA0114.10.123
MA0115.10.9
MA0116.10.0113
MA0117.10.961
MA0119.10.859
MA0122.10.325
MA0124.10.342
MA0125.10.971
MA0131.10.388
MA0135.10.47
MA0136.10.00254
MA0137.20.597
MA0138.20.034
MA0139.10.963
MA0140.10.449
MA0141.10.295
MA0142.10.0772
MA0143.10.132
MA0144.10.626
MA0145.10.233
MA0146.10.795
MA0147.10.332
MA0148.10.821
MA0149.10.382
MA0150.10.282
MA0152.10.18
MA0153.10.179
MA0154.15.96461e-4
MA0155.10.0997
MA0156.10.715
MA0157.10.5
MA0159.10.0294
MA0160.10.531
MA0162.10.41
MA0163.10.188
MA0164.10.75
MA0258.10.00352
MA0259.10.717



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11821

Novel motifP-value
10.509
100.22
1000.98
1010.473
1020.892
1030.548
1040.728
1050.308
1060.0387
1070.337
1080.219
1090.695
110.281
1100.42
1110.0617
1120.215
1130.033
1140.0196
1150.86
1160.929
1170.967
1180.411
1190.0503
120.546
1200.717
1210.969
1220.334
1230.095
1240.194
1250.37
1260.623
1270.423
1280.427
1290.0921
130.329
1300.0254
1310.465
1320.465
1330.00672
1340.338
1350.12
1360.534
1370.625
1380.587
1391.05473e-4
140.412
1400.015
1410.345
1420.669
1430.0115
1440.96
1450.258
1460.57
1470.533
1480.808
1490.272
150.249
1500.416
1510.343
1520.084
1530.28
1540.356
1550.357
1560.632
1570.135
1580.284
1590.107
160.485
1600.153
1610.228
1620.71
1630.977
1640.62
1650.965
1660.739
1670.148
1680.33
1690.227
170.125
180.816
190.566
20.938
200.753
210.499
220.46
230.121
240.993
250.726
260.726
270.133
280.505
290.937
30.382
300.677
310.45
320.53
330.854
340.245
350.295
360.922
370.451
380.4
390.637
40.0761
400.219
410.0914
420.54
430.213
440.187
450.258
460.461
470.31
480.35
490.208
50.0684
500.993
510.416
520.141
530.56
540.519
550.731
560.524
570.49
580.227
590.0711
60.391
600.134
610.954
620.217
630.248
640.654
650.435
660.0911
670.613
680.117
690.332
70.262
700.114
710.441
720.708
730.269
740.13
750.859
760.936
770.123
780.0174
790.959
80.445
800.237
810.719
822.17527e-4
830.737
840.534
850.221
860.46
870.235
880.658
890.0562
90.72
900.239
910.328
920.0616
930.774
940.136
950.929
960.174
970.596
980.642
990.984



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11821


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
4231 (histiocytoma)
201 (connective tissue cancer)
0060100 (musculoskeletal system cancer)
1115 (sarcoma)
1907 (malignant fibroxanthoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100453 (fibroblast cell line sample)
0100400 (sarcoma cell line sample)
0100460 (fibrosarcoma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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