FF:10688-109F4: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005113 | |||
|accession_numbers=CAGE;DRX007896;DRR008768;DRZ000193;DRZ001578;DRZ011543;DRZ012928 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
| | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
| Line 35: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/glassy%2520cell%2520carcinoma%2520cell%2520line%253aHOKUG.CNhs11824.10688-109F4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/glassy%2520cell%2520carcinoma%2520cell%2520line%253aHOKUG.CNhs11824.10688-109F4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/glassy%2520cell%2520carcinoma%2520cell%2520line%253aHOKUG.CNhs11824.10688-109F4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/glassy%2520cell%2520carcinoma%2520cell%2520line%253aHOKUG.CNhs11824.10688-109F4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/glassy%2520cell%2520carcinoma%2520cell%2520line%253aHOKUG.CNhs11824.10688-109F4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10688-109F4 | |id=FF:10688-109F4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0100297 | ||
|is_obsolete= | |||
|library_id=CNhs11824 | |||
|library_id_phase_based=2:CNhs11824 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10688 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10688 | |||
|name=glassy cell carcinoma cell line:HOKUG | |name=glassy cell carcinoma cell line:HOKUG | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11824,LSID829,release010,COMPLETED | |profile_hcage=CNhs11824,LSID829,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0.0919109500998384,0.230114473368167,0,0,0,0,0.071936379365586,0,0.356077687754012,0.0343163493968212,0,0,0,0,0,0,0,0,0,0,0,0.167727230239154,0,0.135099750400856,0,0,0,0,0,-0.00604694616821916,0,0,0.0347706404602922,0,0,0,0,0,0,0,0,0,0,0,0,0.187156313000668,0.0325051443944044,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,0.0707348689965493,0,0,0.0703836030260575,0,0,0,0,0,0,0,0,0.288422760749283,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0158637736794894,0,0,0,0,0.155863513860239,0.049141182404759,0,0,0.083863615119577,0,-0.0980353512377064,0.05290620260026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0727022151232905,0.0919109500998384,0,0,0.292264272983718,0.420286623815713,0.0919109500998384,0,0.0189471251547143,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0.167727230239154,0.167727230239154,0,0,0,0,0,0,0,0.0909727428059383,0,0.317272356535792,0.411897879165686,0,0,-0.0989707854037007,0,0,0,0,0.232254409451972,0,0.338151618091503,0.338151618091503,0,0.160302893796719,0,0.181841857862657,0,0.0919109500998384,0,0,0.0379886800188005,-0.0170494701491238,0,0.0558564122186575,0.354878380321343,0,0,0,0,0.0430465200860687,0,0.0468477464454138,-0.0827201683234173,0,-0.0793360444159985,0.120922571346774,0,0,0,-0.237317122032507,0.924795970508198,0,0,0.239790274212282,-0.13539414351074,0,0,-0.391044581551635,0,-0.0630047058694282,0.151171578802485,0,0.0753029800984944,0,0,0.0919109500998384,0,0,0.0919109500998384,0,0,0,0,0,-0.0574934668214365,0.096234044719742,0.0547131176636565,0.167727230239154,0.65661660301174,0,0.249587639816583,0.0919109500998384,0.00688876263155885,0.0499364854421441,0.134822656903876,0.0459554750499192,0.0191956037713418,0,0.0357618910815896,-0.111465607619569,0.0734009220360705,0.159319299122437,-0.147401849371139,-0.189981719549847,0,-0.0291235439359503,-0.203263442203895,0.171347448260443,-0.224550789195233,0.0749267872666939,0.137639042038547,0.530979989569128,0,0.167727230239154,0,0.401293846252727,0,0.0261054081983678,-0.107347907674464,0.00401470314047153,-0.12131104018037,0.242274226366091,0.0138064698469471,-0.036592574798276,-0.0395325284566706,0.00279249383973956,0.111688437753968,0.0923766539126195,0,0.0919109500998384,0.0158637736794894,0.00394361660912762,0.0216880464631499,-0.277674555087176,0,0.172639141200759,0.314422545724942,0,-0.135246800850577,-0.0931068106133741,0,0.166456401949881,0.0301788674920872,0,0.133814700419117,0.273771525620916,0,0.232254409451972,-0.0669468751650302,0.117124459981573,0.0555671991937387,0,0.00101996318463304,0.0541704551809236,0.231723621353853,0,-0.124406845371514,0.0217173327817602,0.0919109500998384,0.196523538260511,0,-0.116910341130232,0.49021923815418,0.0672637131129692,-0.133972044642454,0.0334641232880132,-0.0518529999938494,-0.125371464840209,0.155863513860239,-0.0320086968571026,0.0919109500998384,-0.0881268324752877,0.0920961866227057,-0.88354475051838,0.393924196284437,0.0279240423935936,-0.121200705143432,0.0412349254932477,-0.072258335479873,0,0.0125623202877803,0,0.118135041499825,0.198203074370286,-0.207034965128714,0.0846066651703667,0,-0.384360731355722,0.65330379304598,0,0.274089762960482,0.014260378151139,0.65661660301174,-0.150367083334639,0.310566318343352,-0.16569495281467,0.0230932230967105,0,-0.0155942347348048,0,0,0.599389858605537,0.224752908971946,0,-0.0345135094523537,0.110334913813216,-0.0488030195061371,-0.115971073434934,0,0,0.662371044201681,0,0,0.247042362869704,0,0.299635533525376,-0.0855991112476013,-0.0584007909623165,0.119452186039963,0,0,0.205239040837134,0,-0.341138108605083,0,0.0919109500998384,0.0261886518192625,-0.116628112990133,0,0,0,0,0,0,0,0,0,0,0.0078676452692956,0.310593218765268,0.068389311182263,0.167727230239154,-0.123781928125671,0,0.0919109500998384,0,0,0,0,0,0,-0.42589320532952,0,-0.12301741567642,0,0,0,0,0.207499238845236,-0.0355093318555693,0,-0.0399517563977934,0,0.455436671616927,0,0,-0.0861409897892114,0,0,0,0.083863615119577,0.0341804930461743,-0.173303731895173,0,0,0,0.10581240520052,0,0,0,0,-0.0182246189533359,0,0,-0.0765171516972224,0,-0.0261178096492296,0.206840881202442,0,0.432300247405654,-0.520304227663392,0.707405870848647,0,0.338151618091503,0.0768044863016152,0,0,0.261937004309713,0,0,-0.00140469736088096,0,0,0,0,0,0,-0.122403562299917,0.0459554750499192,0,0,0,0,0,0,0,0,0,0,0.0411494747672438,0.075503173580644,0.288422760749283,0,0,0,0,0,0,0.105713067090593,0.297051150710863,0,0,0,0,0,0.288422760749283,0,0,-0.0111969929269078,0,0,0,0,0,0.0707348689965493,0,0,0,0.460228946736334,0.0686326987936424,0,0,0.356077687754012,0,0,0,0,0,0,0,0.0160741341596517,0,0.0919109500998384,0,0,0,0.165103674713836,0.458184570881589,0,0,0,0,0,0,0,0.334122800157409,0,0,0,0,-0.0219734236091388,0,0,0,-0.0128854346893181,0,0.071936379365586,0,0,0,0,0,0.0919109500998384,0.0459554750499192,0.083863615119577,0,0,0,0,0,0,0,0,0,0.0459554750499192,0.0459554750499192,0,0,-0.422047282864687,0,-0.103285274124104,-0.00546817195934768,0,0,-0.116501147907055,0,0,0,0,0,0,0.0984786661409692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0919109500998384,0,0,0,0,0,0,-0.061367927484915,0,0,0,0,0,0,0,-0.00604694616821916,0,0,-0.000121859700687773,0,0,0,0.0238882235490053,0.160315288957785,0,-0.0578623672885423,0.150328791746209,-0.023984582614981,0,0,0,-0.054385572482455,0,0,0.0307101279991179,0,0.100949842820253,0,0,0,0,0,0,0,0,0.167727230239154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129819090169496,0,0,0,0,0.135099750400856,0,0,0,0,0,0,0,0,0,0,0,0,0.0459554750499192,0,0,0,0,0,0,0,0,0,0,0,0,0.167727230239154,0,0.232254409451972,0.0459554750499192,0,0,0,0,0,0,0.0498522518441607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087708761970516,0,0,0,0.465532704124838,0,0,0,0,0,0,0,0,0.338151618091503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| |||
|rna_box=109 | |rna_box=109 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 77: | ||
|rna_weight_ug=64.84825 | |rna_weight_ug=64.84825 | ||
|sample_age=53 | |sample_age=53 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB0657 | |sample_cell_catalog=RCB0657 | ||
|sample_cell_line=HOKUG | |sample_cell_line=HOKUG | ||
| Line 69: | Line 90: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.14202131995873e-260!GO:0043226;organelle;9.68491881465673e-211!GO:0043229;intracellular organelle;5.42363242889572e-210!GO:0043231;intracellular membrane-bound organelle;2.59868601682645e-201!GO:0043227;membrane-bound organelle;3.27818075342553e-201!GO:0005737;cytoplasm;1.00315908096105e-178!GO:0044422;organelle part;1.96268311657544e-141!GO:0044446;intracellular organelle part;8.15931616562033e-140!GO:0044444;cytoplasmic part;1.49362282574913e-116!GO:0032991;macromolecular complex;1.46390139429397e-95!GO:0005634;nucleus;1.26725477862407e-94!GO:0044237;cellular metabolic process;7.01089770106155e-92!GO:0044238;primary metabolic process;7.62194983681839e-89!GO:0043170;macromolecule metabolic process;5.66006513041655e-85!GO:0030529;ribonucleoprotein complex;4.52835823295307e-83!GO:0044428;nuclear part;2.48220261918921e-79!GO:0005515;protein binding;3.69843541857589e-75!GO:0003723;RNA binding;1.88918183735924e-74!GO:0043233;organelle lumen;8.1737803606842e-73!GO:0031974;membrane-enclosed lumen;8.1737803606842e-73!GO:0005739;mitochondrion;3.63741260982418e-64!GO:0043283;biopolymer metabolic process;5.16464897928475e-53!GO:0006396;RNA processing;4.44966696187577e-49!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.92765365004833e-49!GO:0005840;ribosome;2.22607715257074e-48!GO:0043234;protein complex;1.26329297810975e-47!GO:0010467;gene expression;2.38743325760302e-47!GO:0031981;nuclear lumen;2.53784162683837e-46!GO:0006412;translation;2.75459463451767e-46!GO:0016043;cellular component organization and biogenesis;3.43465501482361e-45!GO:0019538;protein metabolic process;1.28085331455498e-43!GO:0003735;structural constituent of ribosome;1.8144192861358e-42!GO:0043228;non-membrane-bound organelle;2.42473061478959e-42!GO:0043232;intracellular non-membrane-bound organelle;2.42473061478959e-42!GO:0044429;mitochondrial part;4.43592030955656e-42!GO:0033036;macromolecule localization;7.45546709212125e-42!GO:0015031;protein transport;1.84114706935536e-41!GO:0031090;organelle membrane;2.07919085545248e-41!GO:0016071;mRNA metabolic process;2.07919085545248e-41!GO:0006259;DNA metabolic process;1.26372873109961e-39!GO:0031967;organelle envelope;3.86426423793523e-39!GO:0031975;envelope;7.33374993811849e-39!GO:0005829;cytosol;8.4838509121118e-39!GO:0044260;cellular macromolecule metabolic process;1.26536109465526e-38!GO:0044267;cellular protein metabolic process;1.43340333585525e-38!GO:0008104;protein localization;3.46075524685789e-38!GO:0008380;RNA splicing;3.88331159945509e-38!GO:0045184;establishment of protein localization;1.1048163449329e-37!GO:0033279;ribosomal subunit;7.28103383828598e-37!GO:0044249;cellular biosynthetic process;2.09155017300967e-36!GO:0006397;mRNA processing;1.5069094007805e-35!GO:0006996;organelle organization and biogenesis;2.0785344564897e-33!GO:0009058;biosynthetic process;2.32602019933697e-33!GO:0009059;macromolecule biosynthetic process;2.54375950541596e-32!GO:0046907;intracellular transport;8.7412096880047e-32!GO:0065003;macromolecular complex assembly;1.15778670715865e-31!GO:0005654;nucleoplasm;3.20988387961498e-30!GO:0003676;nucleic acid binding;6.89987991296259e-30!GO:0007049;cell cycle;7.20703936686559e-29!GO:0022607;cellular component assembly;2.44943599030034e-28!GO:0005681;spliceosome;1.14452615072265e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.24362739807107e-27!GO:0006886;intracellular protein transport;6.55593108106522e-27!GO:0005740;mitochondrial envelope;2.71582378567032e-26!GO:0019866;organelle inner membrane;6.08467539532076e-26!GO:0000166;nucleotide binding;1.14463446039671e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.27452181568231e-25!GO:0031966;mitochondrial membrane;4.50271049889502e-25!GO:0044451;nucleoplasm part;9.67551105239139e-25!GO:0005743;mitochondrial inner membrane;5.16516029982139e-24!GO:0016070;RNA metabolic process;2.15550760764128e-23!GO:0006974;response to DNA damage stimulus;3.15595529873468e-23!GO:0006119;oxidative phosphorylation;3.7328042655311e-22!GO:0016462;pyrophosphatase activity;3.54889378803442e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.59809842009702e-21!GO:0017111;nucleoside-triphosphatase activity;4.39168894315241e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;4.80304784184355e-21!GO:0044445;cytosolic part;7.70790365256078e-21!GO:0044455;mitochondrial membrane part;2.71134623095979e-20!GO:0051649;establishment of cellular localization;4.79310428840305e-20!GO:0022402;cell cycle process;6.54076926148807e-20!GO:0031980;mitochondrial lumen;1.0421034529411e-19!GO:0005759;mitochondrial matrix;1.0421034529411e-19!GO:0016874;ligase activity;1.16194025354472e-19!GO:0051641;cellular localization;1.45950592196965e-19!GO:0015934;large ribosomal subunit;1.74997713403865e-19!GO:0006281;DNA repair;2.03626372040705e-19!GO:0008134;transcription factor binding;2.82798722776308e-19!GO:0005694;chromosome;7.38704333325201e-19!GO:0005730;nucleolus;1.86755140724266e-18!GO:0015935;small ribosomal subunit;2.01969867651993e-18!GO:0006512;ubiquitin cycle;3.7204800245259e-18!GO:0006457;protein folding;8.09726919708181e-18!GO:0032553;ribonucleotide binding;1.41120741377027e-17!GO:0032555;purine ribonucleotide binding;1.41120741377027e-17!GO:0044265;cellular macromolecule catabolic process;2.41934455363018e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;3.32992753138942e-17!GO:0006260;DNA replication;4.10463999685226e-17!GO:0017076;purine nucleotide binding;4.7026859655264e-17!GO:0019941;modification-dependent protein catabolic process;6.39835342064139e-17!GO:0043632;modification-dependent macromolecule catabolic process;6.39835342064139e-17!GO:0044257;cellular protein catabolic process;1.19892170270835e-16!GO:0009719;response to endogenous stimulus;1.37564209574422e-16!GO:0005746;mitochondrial respiratory chain;1.50730036021364e-16!GO:0043285;biopolymer catabolic process;1.51431991919726e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.62585957147012e-16!GO:0051276;chromosome organization and biogenesis;1.77206866253692e-16!GO:0022618;protein-RNA complex assembly;3.51809282918374e-16!GO:0048770;pigment granule;4.7275199939888e-16!GO:0042470;melanosome;4.7275199939888e-16!GO:0044427;chromosomal part;4.7275199939888e-16!GO:0006366;transcription from RNA polymerase II promoter;5.21187106060493e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.42514139463191e-16!GO:0012505;endomembrane system;1.07043940495612e-15!GO:0050136;NADH dehydrogenase (quinone) activity;2.25392221440603e-15!GO:0003954;NADH dehydrogenase activity;2.25392221440603e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.25392221440603e-15!GO:0051186;cofactor metabolic process;7.60056333208846e-15!GO:0000278;mitotic cell cycle;1.17458843305433e-14!GO:0000502;proteasome complex (sensu Eukaryota);1.73044923758286e-14!GO:0005524;ATP binding;1.96004677169391e-14!GO:0005761;mitochondrial ribosome;1.97295912250676e-14!GO:0000313;organellar ribosome;1.97295912250676e-14!GO:0009057;macromolecule catabolic process;2.04366106933819e-14!GO:0044248;cellular catabolic process;2.70448947028946e-14!GO:0032559;adenyl ribonucleotide binding;3.35023875905052e-14!GO:0006605;protein targeting;5.14764705816347e-14!GO:0008135;translation factor activity, nucleic acid binding;6.46959420910167e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;6.94336302793914e-14!GO:0051082;unfolded protein binding;8.02828107535191e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;9.03616641249771e-14!GO:0000375;RNA splicing, via transesterification reactions;9.03616641249771e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.03616641249771e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.47778324922089e-13!GO:0030554;adenyl nucleotide binding;1.5628958495978e-13!GO:0042775;organelle ATP synthesis coupled electron transport;2.25010755014738e-13!GO:0042773;ATP synthesis coupled electron transport;2.25010755014738e-13!GO:0016604;nuclear body;2.68736187378734e-13!GO:0030964;NADH dehydrogenase complex (quinone);2.94240328300812e-13!GO:0045271;respiratory chain complex I;2.94240328300812e-13!GO:0005747;mitochondrial respiratory chain complex I;2.94240328300812e-13!GO:0006323;DNA packaging;2.95704874800199e-13!GO:0030163;protein catabolic process;3.37169767451901e-13!GO:0012501;programmed cell death;3.6559283662321e-13!GO:0005635;nuclear envelope;5.27734780227912e-13!GO:0006915;apoptosis;6.42925678589041e-13!GO:0043412;biopolymer modification;8.01689974544968e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.40078324425335e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.99296065908913e-13!GO:0005783;endoplasmic reticulum;1.01014706108925e-12!GO:0048193;Golgi vesicle transport;1.41689598407559e-12!GO:0051726;regulation of cell cycle;1.74463133286764e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.90622293360647e-12!GO:0000074;regulation of progression through cell cycle;2.02874347758756e-12!GO:0005794;Golgi apparatus;2.57604301194425e-12!GO:0006732;coenzyme metabolic process;3.00608562311259e-12!GO:0016887;ATPase activity;3.08013191099329e-12!GO:0008219;cell death;6.37490276700618e-12!GO:0016265;death;6.37490276700618e-12!GO:0022403;cell cycle phase;9.66431158040143e-12!GO:0031965;nuclear membrane;9.66431158040143e-12!GO:0042254;ribosome biogenesis and assembly;1.4061611991204e-11!GO:0006913;nucleocytoplasmic transport;1.4303867808461e-11!GO:0003712;transcription cofactor activity;1.59545262886647e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.75078114349343e-11!GO:0042623;ATPase activity, coupled;2.01005306566275e-11!GO:0044432;endoplasmic reticulum part;2.37277515329065e-11!GO:0044453;nuclear membrane part;3.45503305153357e-11!GO:0006464;protein modification process;3.50066481756249e-11!GO:0051169;nuclear transport;4.13640428040628e-11!GO:0043687;post-translational protein modification;4.85879500865732e-11!GO:0004386;helicase activity;8.87543287529383e-11!GO:0008639;small protein conjugating enzyme activity;9.88687817267833e-11!GO:0016607;nuclear speck;1.43229658358245e-10!GO:0003743;translation initiation factor activity;1.68708488763099e-10!GO:0004842;ubiquitin-protein ligase activity;2.27259073877146e-10!GO:0043566;structure-specific DNA binding;3.14817608991744e-10!GO:0051301;cell division;3.21792662333656e-10!GO:0000785;chromatin;3.46330698186507e-10!GO:0000087;M phase of mitotic cell cycle;4.50166687017318e-10!GO:0006413;translational initiation;4.50166687017318e-10!GO:0019787;small conjugating protein ligase activity;5.99804521210822e-10!GO:0006461;protein complex assembly;6.47567301557219e-10!GO:0005643;nuclear pore;6.97189571598236e-10!GO:0050794;regulation of cellular process;7.84019953862511e-10!GO:0007067;mitosis;8.00482162703423e-10!GO:0051188;cofactor biosynthetic process;8.81216075751998e-10!GO:0016192;vesicle-mediated transport;1.38377088375438e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.75104985286513e-09!GO:0006333;chromatin assembly or disassembly;2.02488070403023e-09!GO:0009055;electron carrier activity;2.6195954247969e-09!GO:0016568;chromatin modification;3.16261877212713e-09!GO:0000279;M phase;3.43250756647068e-09!GO:0006446;regulation of translational initiation;3.55415411043077e-09!GO:0016881;acid-amino acid ligase activity;4.20300254591011e-09!GO:0003697;single-stranded DNA binding;5.15655469400976e-09!GO:0006261;DNA-dependent DNA replication;5.40499667370421e-09!GO:0008565;protein transporter activity;5.85230593252062e-09!GO:0006357;regulation of transcription from RNA polymerase II promoter;5.93970587990436e-09!GO:0065004;protein-DNA complex assembly;6.17965852688927e-09!GO:0031324;negative regulation of cellular metabolic process;6.33484718893782e-09!GO:0050657;nucleic acid transport;6.47041953604227e-09!GO:0051236;establishment of RNA localization;6.47041953604227e-09!GO:0050658;RNA transport;6.47041953604227e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.11820695519491e-09!GO:0006403;RNA localization;8.54359210839202e-09!GO:0048523;negative regulation of cellular process;1.02294001190723e-08!GO:0006399;tRNA metabolic process;1.23361323430017e-08!GO:0008026;ATP-dependent helicase activity;1.34848923152281e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.76227539151806e-08!GO:0017038;protein import;1.78538965595557e-08!GO:0009108;coenzyme biosynthetic process;1.93104859276293e-08!GO:0006163;purine nucleotide metabolic process;2.27160803857697e-08!GO:0005789;endoplasmic reticulum membrane;2.46799588964122e-08!GO:0009259;ribonucleotide metabolic process;3.77473878986268e-08!GO:0015986;ATP synthesis coupled proton transport;3.7957432126216e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.7957432126216e-08!GO:0015078;hydrogen ion transmembrane transporter activity;5.50133815888232e-08!GO:0045333;cellular respiration;5.74011953898393e-08!GO:0009060;aerobic respiration;5.76037080905744e-08!GO:0042981;regulation of apoptosis;5.95224741042785e-08!GO:0016469;proton-transporting two-sector ATPase complex;6.398439032514e-08!GO:0043067;regulation of programmed cell death;6.48418084735922e-08!GO:0016564;transcription repressor activity;6.55657435833172e-08!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.86759036116687e-08!GO:0005667;transcription factor complex;7.45586280375698e-08!GO:0006364;rRNA processing;7.6393074146077e-08!GO:0009892;negative regulation of metabolic process;7.95651115821343e-08!GO:0046930;pore complex;7.96202718040657e-08!GO:0006164;purine nucleotide biosynthetic process;8.10512167700128e-08!GO:0030532;small nuclear ribonucleoprotein complex;9.00081644354122e-08!GO:0016072;rRNA metabolic process;1.20852450284176e-07!GO:0009150;purine ribonucleotide metabolic process;1.41979724533001e-07!GO:0007005;mitochondrion organization and biogenesis;1.47264311434646e-07!GO:0009141;nucleoside triphosphate metabolic process;1.68034416347077e-07!GO:0032446;protein modification by small protein conjugation;1.83945890444736e-07!GO:0019829;cation-transporting ATPase activity;2.05436699480932e-07!GO:0051028;mRNA transport;2.14766646267996e-07!GO:0009260;ribonucleotide biosynthetic process;2.35675009947601e-07!GO:0065002;intracellular protein transport across a membrane;2.44570016708593e-07!GO:0016567;protein ubiquitination;2.47895687684394e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.59003698038732e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.71929877206352e-07!GO:0004812;aminoacyl-tRNA ligase activity;2.71929877206352e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.71929877206352e-07!GO:0051246;regulation of protein metabolic process;2.76564284742573e-07!GO:0003924;GTPase activity;3.09164117797411e-07!GO:0009142;nucleoside triphosphate biosynthetic process;3.14103229266964e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.14103229266964e-07!GO:0009056;catabolic process;3.22150214446245e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.7461080474035e-07!GO:0009144;purine nucleoside triphosphate metabolic process;4.7461080474035e-07!GO:0009152;purine ribonucleotide biosynthetic process;5.09013419107648e-07!GO:0006754;ATP biosynthetic process;5.24340530391341e-07!GO:0006753;nucleoside phosphate metabolic process;5.24340530391341e-07!GO:0005793;ER-Golgi intermediate compartment;5.43508728859582e-07!GO:0016787;hydrolase activity;5.45800955894491e-07!GO:0051427;hormone receptor binding;5.49655533977112e-07!GO:0005768;endosome;5.56599531800345e-07!GO:0048519;negative regulation of biological process;5.62267363371034e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.85038272473637e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.85038272473637e-07!GO:0046034;ATP metabolic process;6.07975031723249e-07!GO:0019222;regulation of metabolic process;6.29661722590973e-07!GO:0005813;centrosome;6.58657843760573e-07!GO:0043038;amino acid activation;6.6264269509196e-07!GO:0006418;tRNA aminoacylation for protein translation;6.6264269509196e-07!GO:0043039;tRNA aminoacylation;6.6264269509196e-07!GO:0015630;microtubule cytoskeleton;7.99564184331186e-07!GO:0016779;nucleotidyltransferase activity;8.23795751911015e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;8.73246626675233e-07!GO:0016481;negative regulation of transcription;1.06636002295818e-06!GO:0043069;negative regulation of programmed cell death;1.0718144593213e-06!GO:0035257;nuclear hormone receptor binding;1.2411296706877e-06!GO:0051170;nuclear import;1.39037414184735e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.42233784220007e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.49385345401826e-06!GO:0045259;proton-transporting ATP synthase complex;1.50492757826469e-06!GO:0043066;negative regulation of apoptosis;1.84081661759309e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.9260703410854e-06!GO:0045786;negative regulation of progression through cell cycle;2.1172389997419e-06!GO:0005815;microtubule organizing center;2.6607419433008e-06!GO:0000245;spliceosome assembly;2.92672506133605e-06!GO:0003713;transcription coactivator activity;3.18371690851887e-06!GO:0006099;tricarboxylic acid cycle;3.33693363757003e-06!GO:0046356;acetyl-CoA catabolic process;3.33693363757003e-06!GO:0016563;transcription activator activity;3.93226498744085e-06!GO:0006334;nucleosome assembly;3.98343054712959e-06!GO:0031497;chromatin assembly;4.15852043955514e-06!GO:0006606;protein import into nucleus;4.43990959568577e-06!GO:0005657;replication fork;5.72946392501181e-06!GO:0006752;group transfer coenzyme metabolic process;6.12678772646838e-06!GO:0003690;double-stranded DNA binding;6.39292564065137e-06!GO:0050789;regulation of biological process;6.78396626857611e-06!GO:0005819;spindle;7.5024180948944e-06!GO:0005525;GTP binding;8.11082209958836e-06!GO:0000151;ubiquitin ligase complex;8.23643953896032e-06!GO:0030120;vesicle coat;9.4626418379367e-06!GO:0030662;coated vesicle membrane;9.4626418379367e-06!GO:0005762;mitochondrial large ribosomal subunit;1.00584126449598e-05!GO:0000315;organellar large ribosomal subunit;1.00584126449598e-05!GO:0009109;coenzyme catabolic process;1.06652921525716e-05!GO:0051187;cofactor catabolic process;1.32742994383043e-05!GO:0048475;coated membrane;1.35714622759118e-05!GO:0030117;membrane coat;1.35714622759118e-05!GO:0003714;transcription corepressor activity;1.43726274171548e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.4504811777113e-05!GO:0006793;phosphorus metabolic process;1.47763101155426e-05!GO:0006796;phosphate metabolic process;1.47763101155426e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.63529799538382e-05!GO:0006084;acetyl-CoA metabolic process;1.73219240715575e-05!GO:0006916;anti-apoptosis;1.74552007399961e-05!GO:0009117;nucleotide metabolic process;1.96192906227359e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.98107734520732e-05!GO:0003682;chromatin binding;2.83103766503856e-05!GO:0008094;DNA-dependent ATPase activity;3.11138118306796e-05!GO:0051329;interphase of mitotic cell cycle;3.34461252070888e-05!GO:0005773;vacuole;3.63113083983196e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.82132348081287e-05!GO:0007264;small GTPase mediated signal transduction;3.87890012691032e-05!GO:0003724;RNA helicase activity;4.27370303428666e-05!GO:0043623;cellular protein complex assembly;4.27370303428666e-05!GO:0006613;cotranslational protein targeting to membrane;4.65176365095324e-05!GO:0007051;spindle organization and biogenesis;5.2683537547538e-05!GO:0004298;threonine endopeptidase activity;5.41577404832998e-05!GO:0051325;interphase;5.4423309405507e-05!GO:0000075;cell cycle checkpoint;5.6881247572427e-05!GO:0006888;ER to Golgi vesicle-mediated transport;6.02863054550429e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.10969930160285e-05!GO:0031323;regulation of cellular metabolic process;7.23880962127754e-05!GO:0031988;membrane-bound vesicle;9.12412896908198e-05!GO:0051168;nuclear export;9.15089688047916e-05!GO:0044440;endosomal part;9.37745668285583e-05!GO:0010008;endosome membrane;9.37745668285583e-05!GO:0044431;Golgi apparatus part;0.000102708942763144!GO:0005770;late endosome;0.000104624420647683!GO:0000314;organellar small ribosomal subunit;0.000105573227893984!GO:0005763;mitochondrial small ribosomal subunit;0.000105573227893984!GO:0000775;chromosome, pericentric region;0.000107906064938441!GO:0016023;cytoplasmic membrane-bound vesicle;0.000114027444252785!GO:0032561;guanyl ribonucleotide binding;0.000125009912033196!GO:0019001;guanyl nucleotide binding;0.000125009912033196!GO:0016740;transferase activity;0.000143128188527996!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000147925287529978!GO:0003729;mRNA binding;0.000153740681309054!GO:0045893;positive regulation of transcription, DNA-dependent;0.000175336765790921!GO:0048471;perinuclear region of cytoplasm;0.000175794242241719!GO:0045892;negative regulation of transcription, DNA-dependent;0.000176077468829824!GO:0045454;cell redox homeostasis;0.0001800294420598!GO:0006302;double-strand break repair;0.0001800294420598!GO:0006350;transcription;0.000180803288007378!GO:0008654;phospholipid biosynthetic process;0.000186932989852547!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000206481028264995!GO:0003899;DNA-directed RNA polymerase activity;0.000208792705966044!GO:0048522;positive regulation of cellular process;0.000214523853255398!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000219018430253553!GO:0000323;lytic vacuole;0.000226215811384172!GO:0005764;lysosome;0.000226215811384172!GO:0043021;ribonucleoprotein binding;0.000237637637074151!GO:0051052;regulation of DNA metabolic process;0.000238349007612957!GO:0006402;mRNA catabolic process;0.000245506506571085!GO:0005798;Golgi-associated vesicle;0.000256185264495788!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000257807963731646!GO:0031252;leading edge;0.00028646676286219!GO:0016310;phosphorylation;0.00029617520819422!GO:0042802;identical protein binding;0.000312776445685148!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000313670772080986!GO:0031982;vesicle;0.000333455523319104!GO:0065009;regulation of a molecular function;0.000351696578019702!GO:0005788;endoplasmic reticulum lumen;0.000373115034037012!GO:0015980;energy derivation by oxidation of organic compounds;0.000395445499874537!GO:0003684;damaged DNA binding;0.000395445499874537!GO:0008186;RNA-dependent ATPase activity;0.000429115955355833!GO:0006950;response to stress;0.00047446276516256!GO:0030867;rough endoplasmic reticulum membrane;0.000482845050564966!GO:0051789;response to protein stimulus;0.000555139237382633!GO:0006986;response to unfolded protein;0.000555139237382633!GO:0006383;transcription from RNA polymerase III promoter;0.000555139237382633!GO:0031410;cytoplasmic vesicle;0.000555911809573776!GO:0032508;DNA duplex unwinding;0.000562807553389017!GO:0032392;DNA geometric change;0.000562807553389017!GO:0016491;oxidoreductase activity;0.000591643833035198!GO:0006091;generation of precursor metabolites and energy;0.000618646378550872!GO:0019899;enzyme binding;0.000630900849590024!GO:0030036;actin cytoskeleton organization and biogenesis;0.000668676225682073!GO:0010468;regulation of gene expression;0.000755815702551347!GO:0008250;oligosaccharyl transferase complex;0.000755815702551347!GO:0033116;ER-Golgi intermediate compartment membrane;0.000763839665517709!GO:0006401;RNA catabolic process;0.000763902568120449!GO:0045941;positive regulation of transcription;0.000767160663012031!GO:0003702;RNA polymerase II transcription factor activity;0.000771144066710504!GO:0008632;apoptotic program;0.000778370766235144!GO:0000776;kinetochore;0.000844645045205819!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000932986529530412!GO:0005885;Arp2/3 protein complex;0.000959952739521142!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000991286183347237!GO:0051101;regulation of DNA binding;0.0010195044441228!GO:0006414;translational elongation;0.0010195044441228!GO:0035258;steroid hormone receptor binding;0.00103608738559233!GO:0004576;oligosaccharyl transferase activity;0.00105376661691984!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00111985384598923!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00116387952522539!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00116387952522539!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00116387952522539!GO:0016859;cis-trans isomerase activity;0.00119637900336629!GO:0051920;peroxiredoxin activity;0.00120491071527207!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00121391062988558!GO:0000228;nuclear chromosome;0.00122459198469998!GO:0004004;ATP-dependent RNA helicase activity;0.00123237928032498!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.001257182908415!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0012989787885158!GO:0006268;DNA unwinding during replication;0.00133363172388521!GO:0051252;regulation of RNA metabolic process;0.00137486487701235!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00139324460720114!GO:0046983;protein dimerization activity;0.0014343401133877!GO:0005048;signal sequence binding;0.0014343401133877!GO:0022890;inorganic cation transmembrane transporter activity;0.00145824246249779!GO:0007010;cytoskeleton organization and biogenesis;0.00149704175034725!GO:0042770;DNA damage response, signal transduction;0.00154599645644229!GO:0031072;heat shock protein binding;0.00159720012362509!GO:0005769;early endosome;0.00162388943732912!GO:0003678;DNA helicase activity;0.00165332101331195!GO:0000139;Golgi membrane;0.00167792122042365!GO:0000786;nucleosome;0.00170010421283212!GO:0007052;mitotic spindle organization and biogenesis;0.00174405574954306!GO:0005684;U2-dependent spliceosome;0.00181426671852123!GO:0006352;transcription initiation;0.00183688202335923!GO:0016197;endosome transport;0.0018568066276649!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00199500027206677!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00199500027206677!GO:0046489;phosphoinositide biosynthetic process;0.00200596224834!GO:0006612;protein targeting to membrane;0.00202693303961612!GO:0007243;protein kinase cascade;0.00208562811716342!GO:0009165;nucleotide biosynthetic process;0.00227145861915274!GO:0016791;phosphoric monoester hydrolase activity;0.00262274393410884!GO:0004527;exonuclease activity;0.00263840835311372!GO:0006611;protein export from nucleus;0.00263840835311372!GO:0003746;translation elongation factor activity;0.00279608480407862!GO:0030521;androgen receptor signaling pathway;0.0028195212890629!GO:0030132;clathrin coat of coated pit;0.00282615843948594!GO:0043596;nuclear replication fork;0.00289177620985443!GO:0000792;heterochromatin;0.0028938425170222!GO:0065007;biological regulation;0.00289396103243621!GO:0006284;base-excision repair;0.00291144715704105!GO:0008033;tRNA processing;0.00302502184970016!GO:0006310;DNA recombination;0.00305168727255452!GO:0032774;RNA biosynthetic process;0.00307645960463209!GO:0006270;DNA replication initiation;0.00320602307830901!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00323411900677325!GO:0006839;mitochondrial transport;0.00323856716877983!GO:0046483;heterocycle metabolic process;0.003261526487254!GO:0048500;signal recognition particle;0.0032707713477626!GO:0046474;glycerophospholipid biosynthetic process;0.00340381253313352!GO:0043681;protein import into mitochondrion;0.0036574400968832!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00368686330806928!GO:0006351;transcription, DNA-dependent;0.00368751960893447!GO:0006892;post-Golgi vesicle-mediated transport;0.00391722255250633!GO:0008629;induction of apoptosis by intracellular signals;0.00400084910360847!GO:0016363;nuclear matrix;0.0040082840565883!GO:0000049;tRNA binding;0.00418757794047562!GO:0008022;protein C-terminus binding;0.00424011207462262!GO:0006891;intra-Golgi vesicle-mediated transport;0.00432111731073534!GO:0006338;chromatin remodeling;0.00444533498890549!GO:0006354;RNA elongation;0.00453470612782408!GO:0005876;spindle microtubule;0.00457034229052348!GO:0008361;regulation of cell size;0.00465597862137679!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00484741275867131!GO:0051098;regulation of binding;0.00488451362569932!GO:0030137;COPI-coated vesicle;0.00491389361677308!GO:0006626;protein targeting to mitochondrion;0.0050623989986602!GO:0001558;regulation of cell growth;0.00509362412097058!GO:0008234;cysteine-type peptidase activity;0.0052106930126273!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00533025312898582!GO:0005905;coated pit;0.00533025312898582!GO:0030663;COPI coated vesicle membrane;0.00533025312898582!GO:0030126;COPI vesicle coat;0.00533025312898582!GO:0006979;response to oxidative stress;0.00534012483181943!GO:0016251;general RNA polymerase II transcription factor activity;0.00536431690182924!GO:0016272;prefoldin complex;0.00540472388729353!GO:0030880;RNA polymerase complex;0.00562906801606012!GO:0030118;clathrin coat;0.00571138634515404!GO:0003711;transcription elongation regulator activity;0.00571138634515404!GO:0005791;rough endoplasmic reticulum;0.00580028761541689!GO:0030029;actin filament-based process;0.00582854714397023!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00584237340979623!GO:0007088;regulation of mitosis;0.00605238744434688!GO:0015992;proton transport;0.0062156277091447!GO:0044452;nucleolar part;0.00624483291541494!GO:0016853;isomerase activity;0.00648891275668793!GO:0005637;nuclear inner membrane;0.00669089755612666!GO:0048487;beta-tubulin binding;0.00675994098650358!GO:0046966;thyroid hormone receptor binding;0.00681613801884281!GO:0008139;nuclear localization sequence binding;0.00690824130588114!GO:0007050;cell cycle arrest;0.00697566831026492!GO:0016049;cell growth;0.00732048618300901!GO:0019843;rRNA binding;0.0073353775946019!GO:0050681;androgen receptor binding;0.0073716030707055!GO:0044454;nuclear chromosome part;0.00743967980398376!GO:0043488;regulation of mRNA stability;0.00751046631354641!GO:0043487;regulation of RNA stability;0.00751046631354641!GO:0018196;peptidyl-asparagine modification;0.00756121397014714!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00756121397014714!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00757540730402819!GO:0015002;heme-copper terminal oxidase activity;0.00757540730402819!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00757540730402819!GO:0004129;cytochrome-c oxidase activity;0.00757540730402819!GO:0008312;7S RNA binding;0.00767201001315784!GO:0006818;hydrogen transport;0.00768227113886804!GO:0040029;regulation of gene expression, epigenetic;0.00769522738595401!GO:0004674;protein serine/threonine kinase activity;0.00775075757807436!GO:0008287;protein serine/threonine phosphatase complex;0.0079068784925823!GO:0006672;ceramide metabolic process;0.00800040282046471!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00830138916110934!GO:0016741;transferase activity, transferring one-carbon groups;0.00830138916110934!GO:0033673;negative regulation of kinase activity;0.00849005256479541!GO:0006469;negative regulation of protein kinase activity;0.00849005256479541!GO:0030384;phosphoinositide metabolic process;0.00855873116350372!GO:0006405;RNA export from nucleus;0.0087923893447968!GO:0006289;nucleotide-excision repair;0.00883859726261624!GO:0006275;regulation of DNA replication;0.00892649515136855!GO:0008092;cytoskeletal protein binding;0.00916156265251349!GO:0008601;protein phosphatase type 2A regulator activity;0.00917012660503204!GO:0004518;nuclease activity;0.0092888055043731!GO:0030176;integral to endoplasmic reticulum membrane;0.009413171297714!GO:0008168;methyltransferase activity;0.00945902703908076!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00951013652640133!GO:0015399;primary active transmembrane transporter activity;0.00951013652640133!GO:0050662;coenzyme binding;0.00968608440983306!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00976811182166234!GO:0009116;nucleoside metabolic process;0.00987744835221225!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00990285285765544!GO:0045047;protein targeting to ER;0.00990285285765544!GO:0003725;double-stranded RNA binding;0.00999476924833191!GO:0050790;regulation of catalytic activity;0.0100048676609899!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0100048676609899!GO:0051087;chaperone binding;0.010237649023986!GO:0001726;ruffle;0.0102999054884592!GO:0000082;G1/S transition of mitotic cell cycle;0.0103818806984494!GO:0043601;nuclear replisome;0.0108817051567251!GO:0030894;replisome;0.0108817051567251!GO:0042393;histone binding;0.01090044410614!GO:0007006;mitochondrial membrane organization and biogenesis;0.0111685730817383!GO:0000059;protein import into nucleus, docking;0.0112071729283591!GO:0030119;AP-type membrane coat adaptor complex;0.0113155528505712!GO:0051128;regulation of cellular component organization and biogenesis;0.0113342820888362!GO:0016584;nucleosome positioning;0.0113342820888362!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0115455586943318!GO:0000428;DNA-directed RNA polymerase complex;0.0115455586943318!GO:0048518;positive regulation of biological process;0.0117171946917336!GO:0051540;metal cluster binding;0.0120019234772991!GO:0051536;iron-sulfur cluster binding;0.0120019234772991!GO:0048468;cell development;0.012247615804869!GO:0046519;sphingoid metabolic process;0.0124591134090803!GO:0045449;regulation of transcription;0.0125785528384593!GO:0030131;clathrin adaptor complex;0.0125883783603723!GO:0000159;protein phosphatase type 2A complex;0.0127715208238964!GO:0015631;tubulin binding;0.0128264005037539!GO:0043433;negative regulation of transcription factor activity;0.0130457305734676!GO:0004721;phosphoprotein phosphatase activity;0.0130730078260917!GO:0016044;membrane organization and biogenesis;0.0132045868948077!GO:0019867;outer membrane;0.0135911185590615!GO:0043065;positive regulation of apoptosis;0.0139305822297277!GO:0008637;apoptotic mitochondrial changes;0.0140695114396037!GO:0031968;organelle outer membrane;0.0144348736437103!GO:0030518;steroid hormone receptor signaling pathway;0.0144571701068915!GO:0046467;membrane lipid biosynthetic process;0.0145014895392472!GO:0009967;positive regulation of signal transduction;0.0145692751164772!GO:0016311;dephosphorylation;0.0145729475371867!GO:0000790;nuclear chromatin;0.0147908835340021!GO:0005741;mitochondrial outer membrane;0.0149477388919118!GO:0006506;GPI anchor biosynthetic process;0.0152834714437633!GO:0051348;negative regulation of transferase activity;0.0153534277547949!GO:0031124;mRNA 3'-end processing;0.0154745691836351!GO:0043284;biopolymer biosynthetic process;0.0155936044889379!GO:0032200;telomere organization and biogenesis;0.0155936044889379!GO:0000723;telomere maintenance;0.0155936044889379!GO:0017166;vinculin binding;0.0157951657182607!GO:0000339;RNA cap binding;0.0158336383151802!GO:0030027;lamellipodium;0.0161690798757618!GO:0006376;mRNA splice site selection;0.0162028834795296!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0162028834795296!GO:0051287;NAD binding;0.0162028834795296!GO:0004860;protein kinase inhibitor activity;0.0163250751236374!GO:0043068;positive regulation of programmed cell death;0.0166283616554811!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0169036644286011!GO:0006733;oxidoreduction coenzyme metabolic process;0.0172022395172937!GO:0007040;lysosome organization and biogenesis;0.0176535217804686!GO:0006650;glycerophospholipid metabolic process;0.0180623565457609!GO:0030133;transport vesicle;0.0188881095693752!GO:0048037;cofactor binding;0.0189996330313955!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0192667137809099!GO:0005874;microtubule;0.0192667137809099!GO:0009112;nucleobase metabolic process;0.0193299803140594!GO:0043022;ribosome binding;0.0193741902829136!GO:0005869;dynactin complex;0.0197536824279612!GO:0006505;GPI anchor metabolic process;0.0199832173963878!GO:0042026;protein refolding;0.0200613378025561!GO:0046822;regulation of nucleocytoplasmic transport;0.0203392505925292!GO:0000922;spindle pole;0.0206491178814878!GO:0006417;regulation of translation;0.0210050493291423!GO:0007265;Ras protein signal transduction;0.0219203778480035!GO:0005832;chaperonin-containing T-complex;0.0223522097957597!GO:0008180;signalosome;0.0227622754523318!GO:0005856;cytoskeleton;0.0229607823614464!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0231301492926565!GO:0006144;purine base metabolic process;0.0236027193025624!GO:0051338;regulation of transferase activity;0.0237616944757025!GO:0019783;small conjugating protein-specific protease activity;0.0237616944757025!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0239890456474184!GO:0000086;G2/M transition of mitotic cell cycle;0.0240222335018517!GO:0022415;viral reproductive process;0.0241136452216764!GO:0005862;muscle thin filament tropomyosin;0.0241538402776592!GO:0007017;microtubule-based process;0.024154941716631!GO:0030031;cell projection biogenesis;0.024154941716631!GO:0008408;3'-5' exonuclease activity;0.0248827251788789!GO:0031529;ruffle organization and biogenesis;0.0251670313353992!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0255587110628442!GO:0043414;biopolymer methylation;0.025636605003199!GO:0030658;transport vesicle membrane;0.0256744973901858!GO:0006595;polyamine metabolic process;0.0257575306097198!GO:0005669;transcription factor TFIID complex;0.0258110838975181!GO:0045792;negative regulation of cell size;0.0263309516672984!GO:0007093;mitotic cell cycle checkpoint;0.0272726668138088!GO:0000781;chromosome, telomeric region;0.0274605079981016!GO:0019752;carboxylic acid metabolic process;0.0277886044612112!GO:0045113;regulation of integrin biosynthetic process;0.0277886044612112!GO:0045112;integrin biosynthetic process;0.0277886044612112!GO:0006607;NLS-bearing substrate import into nucleus;0.0278291021832505!GO:0031625;ubiquitin protein ligase binding;0.027945073679202!GO:0043492;ATPase activity, coupled to movement of substances;0.029062354522317!GO:0030308;negative regulation of cell growth;0.0291937514360427!GO:0043154;negative regulation of caspase activity;0.0294222230679499!GO:0004722;protein serine/threonine phosphatase activity;0.0294992412365168!GO:0006082;organic acid metabolic process;0.0296905572850761!GO:0030125;clathrin vesicle coat;0.0300517856190521!GO:0030665;clathrin coated vesicle membrane;0.0300517856190521!GO:0000096;sulfur amino acid metabolic process;0.0300606392932643!GO:0005720;nuclear heterochromatin;0.0307740163369293!GO:0007059;chromosome segregation;0.0315367309379813!GO:0045045;secretory pathway;0.031832507139501!GO:0030911;TPR domain binding;0.0321705009554581!GO:0004843;ubiquitin-specific protease activity;0.0331481133619049!GO:0031901;early endosome membrane;0.0333146989266143!GO:0043549;regulation of kinase activity;0.0333167361635658!GO:0009303;rRNA transcription;0.0336941073743711!GO:0005938;cell cortex;0.0343263491402699!GO:0008426;protein kinase C inhibitor activity;0.0343263491402699!GO:0006497;protein amino acid lipidation;0.0345050950328285!GO:0004532;exoribonuclease activity;0.0346924617927192!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0346924617927192!GO:0003677;DNA binding;0.034732352918731!GO:0009119;ribonucleoside metabolic process;0.034732352918731!GO:0000123;histone acetyltransferase complex;0.034732352918731!GO:0031570;DNA integrity checkpoint;0.0349341896543934!GO:0007004;telomere maintenance via telomerase;0.0351795009835721!GO:0008630;DNA damage response, signal transduction resulting in induction of apoptosis;0.035467173939061!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0369900303448836!GO:0050178;phenylpyruvate tautomerase activity;0.0370546749894181!GO:0022408;negative regulation of cell-cell adhesion;0.0371578510929516!GO:0007033;vacuole organization and biogenesis;0.0372430159326851!GO:0006509;membrane protein ectodomain proteolysis;0.0375217225671207!GO:0033619;membrane protein proteolysis;0.0375217225671207!GO:0004300;enoyl-CoA hydratase activity;0.0376299390604323!GO:0030433;ER-associated protein catabolic process;0.0387364123180776!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0387364123180776!GO:0031326;regulation of cellular biosynthetic process;0.0390330590671676!GO:0046982;protein heterodimerization activity;0.0394645342539301!GO:0032507;maintenance of cellular protein localization;0.0395478882120496!GO:0030503;regulation of cell redox homeostasis;0.039582925748209!GO:0035267;NuA4 histone acetyltransferase complex;0.0400584722328305!GO:0051053;negative regulation of DNA metabolic process;0.0401778164158271!GO:0006767;water-soluble vitamin metabolic process;0.0405746430947617!GO:0050811;GABA receptor binding;0.0410299865061425!GO:0046128;purine ribonucleoside metabolic process;0.0411902366900516!GO:0042278;purine nucleoside metabolic process;0.0411902366900516!GO:0031532;actin cytoskeleton reorganization;0.0414341238603131!GO:0005758;mitochondrial intermembrane space;0.0418874360940354!GO:0016126;sterol biosynthetic process;0.0422358189913132!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0422358189913132!GO:0004003;ATP-dependent DNA helicase activity;0.0422604049259437!GO:0043189;H4/H2A histone acetyltransferase complex;0.0423401672360998!GO:0030659;cytoplasmic vesicle membrane;0.04289139087463!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0429274883033661!GO:0051059;NF-kappaB binding;0.0432440607701346!GO:0004563;beta-N-acetylhexosaminidase activity;0.0432440607701346!GO:0004448;isocitrate dehydrogenase activity;0.0432860572144549!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0433484882882049!GO:0008652;amino acid biosynthetic process;0.0433484882882049!GO:0017134;fibroblast growth factor binding;0.0433906718253824!GO:0043624;cellular protein complex disassembly;0.043769526077065!GO:0022406;membrane docking;0.0444680991205673!GO:0048278;vesicle docking;0.0444680991205673!GO:0000725;recombinational repair;0.0445419519286281!GO:0000724;double-strand break repair via homologous recombination;0.0445419519286281!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0446177493385891!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.04463250478802!GO:0031371;ubiquitin conjugating enzyme complex;0.04463250478802!GO:0043281;regulation of caspase activity;0.0446542847753532!GO:0040008;regulation of growth;0.0446542847753532!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0451140957496849!GO:0010257;NADH dehydrogenase complex assembly;0.0451140957496849!GO:0033108;mitochondrial respiratory chain complex assembly;0.0451140957496849!GO:0001836;release of cytochrome c from mitochondria;0.0451140957496849!GO:0031902;late endosome membrane;0.0453980990376388!GO:0000209;protein polyubiquitination;0.0456507601514806!GO:0051539;4 iron, 4 sulfur cluster binding;0.0463615181025239!GO:0047485;protein N-terminus binding;0.0466739614266395!GO:0030660;Golgi-associated vesicle membrane;0.0468639351713041!GO:0000805;X chromosome;0.0475304940056368!GO:0001740;Barr body;0.0475304940056368!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0479133767643343!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0484766761419447!GO:0005784;translocon complex;0.0485646972354452!GO:0008538;proteasome activator activity;0.0495598906680584!GO:0007242;intracellular signaling cascade;0.0496089683555566 | |||
|sample_id=10688 | |sample_id=10688 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 98: | ||
|sample_tissue=cervix | |sample_tissue=cervix | ||
|top_motifs=VSX1,2:2.43311710967;SNAI1..3:2.07891899345;ZEB1:1.89268899318;TP53:1.43891256011;NKX2-1,4:1.259895858;MYOD1:1.21607986714;E2F1..5:1.20473689113;NKX2-3_NKX2-5:1.15612804159;ELK1,4_GABP{A,B1}:1.03760965756;MTF1:0.938779650278;TFDP1:0.911588404813;TBX4,5:0.892461820636;FOXN1:0.888770767152;XCPE1{core}:0.849356144128;PITX1..3:0.839592944707;PDX1:0.819904566172;FOXQ1:0.804166007695;TEAD1:0.78489675519;PPARG:0.75132844999;RBPJ:0.742418889583;DBP:0.7381000553;TFAP2{A,C}:0.734393896986;HOXA9_MEIS1:0.715551910117;CEBPA,B_DDIT3:0.609372736105;ESR1:0.547684989217;CDC5L:0.545016467454;ZNF148:0.525370403472;POU1F1:0.502192667339;PAX1,9:0.502003335879;MED-1{core}:0.478864005468;NR6A1:0.463175858352;BREu{core}:0.41591279161;POU6F1:0.399175882644;FOX{F1,F2,J1}:0.353566756254;SP1:0.350450045862;NFE2:0.33797086077;IRF7:0.326162737969;FOS_FOS{B,L1}_JUN{B,D}:0.318414390218;TFAP2B:0.305349786428;NR5A1,2:0.301160735952;NKX6-1,2:0.299514957823;ONECUT1,2:0.297216435246;NKX3-2:0.245069472361;HOX{A6,A7,B6,B7}:0.237437711607;ZNF423:0.234977857323;TLX2:0.23173456215;NRF1:0.22489882731;FOXO1,3,4:0.220464888973;RFX1:0.192891993561;RORA:0.191386359251;EBF1:0.17676785243;OCT4_SOX2{dimer}:0.176225598257;HOX{A4,D4}:0.172723832446;TLX1..3_NFIC{dimer}:0.166710588463;ZFP161:0.161960900514;TEF:0.161314518451;FOXP1:0.14152365309;FOX{I1,J2}:0.13530281936;ADNP_IRX_SIX_ZHX:0.13451331526;ATF4:0.128381914534;HBP1_HMGB_SSRP1_UBTF:0.0990424433049;RFX2..5_RFXANK_RFXAP:0.0912363492131;TFCP2:0.0909006334601;HLF:0.0765784090648;ZNF143:0.0708846280738;ESRRA:0.0697975618821;ZBTB16:0.0620961264966;PAX4:0.0564427952808;BACH2:0.0466268401374;YY1:0.0414507856269;ZBTB6:0.0410900824819;ARID5B:0.0363521668907;FOXL1:0.0335738621843;TAL1_TCF{3,4,12}:0.00849160327143;LMO2:0.00265846789595;NFY{A,B,C}:-0.000320757495958;FOXM1:-0.0126410877233;MYB:-0.0158814123352;ATF2:-0.0194012936572;IKZF2:-0.0299009906233;HIC1:-0.0561245428934;EGR1..3:-0.0593227291719;CREB1:-0.061125010279;IKZF1:-0.0699460574621;HNF4A_NR2F1,2:-0.0747978873009;NFIL3:-0.076022324001;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0760303678144;SOX5:-0.0797665616685;GLI1..3:-0.0923427082352;ALX4:-0.113771875593;PAX2:-0.127255376636;UFEwm:-0.130728952071;CDX1,2,4:-0.131238015674;FOSL2:-0.139019068898;MAZ:-0.141688971472;PAX3,7:-0.141973325023;HMGA1,2:-0.148212938441;POU2F1..3:-0.148651110687;CRX:-0.158006686148;GFI1:-0.15816831441;TBP:-0.158479515671;ELF1,2,4:-0.159489161854;HOX{A5,B5}:-0.172673453338;GZF1:-0.176687292261;NFE2L2:-0.177120297407;MTE{core}:-0.179003651619;HNF1A:-0.179808471341;ATF5_CREB3:-0.184927501327;bHLH_family:-0.188761627291;PRRX1,2:-0.206843474242;POU5F1:-0.208010915583;GTF2A1,2:-0.223838478085;KLF4:-0.226388299816;EP300:-0.230301749537;ZIC1..3:-0.237769099034;HAND1,2:-0.244542769442;JUN:-0.244827744229;HIF1A:-0.246092308673;PBX1:-0.246932836156;STAT2,4,6:-0.252171194547;MEF2{A,B,C,D}:-0.265318694163;ZNF384:-0.298494569375;LEF1_TCF7_TCF7L1,2:-0.314383147308;SOX{8,9,10}:-0.351892709176;NANOG:-0.367878546485;RREB1:-0.369979701361;FOX{D1,D2}:-0.373851403155;LHX3,4:-0.382903430605;MAFB:-0.383729395158;GFI1B:-0.393855488431;REST:-0.39401786272;BPTF:-0.423600551732;GTF2I:-0.427109803797;TOPORS:-0.428680769902;IRF1,2:-0.443262538971;ALX1:-0.468416357278;NFKB1_REL_RELA:-0.473158318964;GATA6:-0.473938384105;NR1H4:-0.475701180943;MYBL2:-0.495738895434;CUX2:-0.502510203409;HES1:-0.534144581788;AHR_ARNT_ARNT2:-0.547136611474;NHLH1,2:-0.547462525477;AIRE:-0.551360324902;SRF:-0.556000760924;ETS1,2:-0.559212159857;T:-0.577360559771;MZF1:-0.605214843662;FOXP3:-0.60979008914;SOX2:-0.650990050687;TFAP4:-0.651609283418;STAT5{A,B}:-0.65877234523;RUNX1..3:-0.668149139679;SPI1:-0.669106388591;SPIB:-0.674763894969;EN1,2:-0.682016400867;PRDM1:-0.68681246168;SOX17:-0.686886218717;PATZ1:-0.761188765564;HSF1,2:-0.765892158329;PAX5:-0.767463257028;NKX3-1:-0.78472708003;NR3C1:-0.786826699982;AR:-0.788016014508;FOXD3:-0.792870469474;SREBF1,2:-0.795998522077;EVI1:-0.802100140348;NFIX:-0.8490883036;STAT1,3:-0.862857762217;RXR{A,B,G}:-0.870985218546;POU3F1..4:-0.91420404218;NKX2-2,8:-0.914342814053;DMAP1_NCOR{1,2}_SMARC:-0.952960053342;MYFfamily:-0.960252326759;PAX8:-0.961935753526;ATF6:-0.974133126094;FOXA2:-1.01333378699;TGIF1:-1.1003322386;PAX6:-1.11680446664;GCM1,2:-1.2030405576;NFE2L1:-1.23286941196;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.25905776343;RXRA_VDR{dimer}:-1.31948990495;ZNF238:-1.3292264949;SPZ1:-1.39931277481;SMAD1..7,9:-1.41946829285;GATA4:-1.46331672739;HMX1:-1.46488181891;NANOG{mouse}:-1.62506683013;NFATC1..3:-1.63783159655;XBP1:-1.68544342492 | |top_motifs=VSX1,2:2.43311710967;SNAI1..3:2.07891899345;ZEB1:1.89268899318;TP53:1.43891256011;NKX2-1,4:1.259895858;MYOD1:1.21607986714;E2F1..5:1.20473689113;NKX2-3_NKX2-5:1.15612804159;ELK1,4_GABP{A,B1}:1.03760965756;MTF1:0.938779650278;TFDP1:0.911588404813;TBX4,5:0.892461820636;FOXN1:0.888770767152;XCPE1{core}:0.849356144128;PITX1..3:0.839592944707;PDX1:0.819904566172;FOXQ1:0.804166007695;TEAD1:0.78489675519;PPARG:0.75132844999;RBPJ:0.742418889583;DBP:0.7381000553;TFAP2{A,C}:0.734393896986;HOXA9_MEIS1:0.715551910117;CEBPA,B_DDIT3:0.609372736105;ESR1:0.547684989217;CDC5L:0.545016467454;ZNF148:0.525370403472;POU1F1:0.502192667339;PAX1,9:0.502003335879;MED-1{core}:0.478864005468;NR6A1:0.463175858352;BREu{core}:0.41591279161;POU6F1:0.399175882644;FOX{F1,F2,J1}:0.353566756254;SP1:0.350450045862;NFE2:0.33797086077;IRF7:0.326162737969;FOS_FOS{B,L1}_JUN{B,D}:0.318414390218;TFAP2B:0.305349786428;NR5A1,2:0.301160735952;NKX6-1,2:0.299514957823;ONECUT1,2:0.297216435246;NKX3-2:0.245069472361;HOX{A6,A7,B6,B7}:0.237437711607;ZNF423:0.234977857323;TLX2:0.23173456215;NRF1:0.22489882731;FOXO1,3,4:0.220464888973;RFX1:0.192891993561;RORA:0.191386359251;EBF1:0.17676785243;OCT4_SOX2{dimer}:0.176225598257;HOX{A4,D4}:0.172723832446;TLX1..3_NFIC{dimer}:0.166710588463;ZFP161:0.161960900514;TEF:0.161314518451;FOXP1:0.14152365309;FOX{I1,J2}:0.13530281936;ADNP_IRX_SIX_ZHX:0.13451331526;ATF4:0.128381914534;HBP1_HMGB_SSRP1_UBTF:0.0990424433049;RFX2..5_RFXANK_RFXAP:0.0912363492131;TFCP2:0.0909006334601;HLF:0.0765784090648;ZNF143:0.0708846280738;ESRRA:0.0697975618821;ZBTB16:0.0620961264966;PAX4:0.0564427952808;BACH2:0.0466268401374;YY1:0.0414507856269;ZBTB6:0.0410900824819;ARID5B:0.0363521668907;FOXL1:0.0335738621843;TAL1_TCF{3,4,12}:0.00849160327143;LMO2:0.00265846789595;NFY{A,B,C}:-0.000320757495958;FOXM1:-0.0126410877233;MYB:-0.0158814123352;ATF2:-0.0194012936572;IKZF2:-0.0299009906233;HIC1:-0.0561245428934;EGR1..3:-0.0593227291719;CREB1:-0.061125010279;IKZF1:-0.0699460574621;HNF4A_NR2F1,2:-0.0747978873009;NFIL3:-0.076022324001;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0760303678144;SOX5:-0.0797665616685;GLI1..3:-0.0923427082352;ALX4:-0.113771875593;PAX2:-0.127255376636;UFEwm:-0.130728952071;CDX1,2,4:-0.131238015674;FOSL2:-0.139019068898;MAZ:-0.141688971472;PAX3,7:-0.141973325023;HMGA1,2:-0.148212938441;POU2F1..3:-0.148651110687;CRX:-0.158006686148;GFI1:-0.15816831441;TBP:-0.158479515671;ELF1,2,4:-0.159489161854;HOX{A5,B5}:-0.172673453338;GZF1:-0.176687292261;NFE2L2:-0.177120297407;MTE{core}:-0.179003651619;HNF1A:-0.179808471341;ATF5_CREB3:-0.184927501327;bHLH_family:-0.188761627291;PRRX1,2:-0.206843474242;POU5F1:-0.208010915583;GTF2A1,2:-0.223838478085;KLF4:-0.226388299816;EP300:-0.230301749537;ZIC1..3:-0.237769099034;HAND1,2:-0.244542769442;JUN:-0.244827744229;HIF1A:-0.246092308673;PBX1:-0.246932836156;STAT2,4,6:-0.252171194547;MEF2{A,B,C,D}:-0.265318694163;ZNF384:-0.298494569375;LEF1_TCF7_TCF7L1,2:-0.314383147308;SOX{8,9,10}:-0.351892709176;NANOG:-0.367878546485;RREB1:-0.369979701361;FOX{D1,D2}:-0.373851403155;LHX3,4:-0.382903430605;MAFB:-0.383729395158;GFI1B:-0.393855488431;REST:-0.39401786272;BPTF:-0.423600551732;GTF2I:-0.427109803797;TOPORS:-0.428680769902;IRF1,2:-0.443262538971;ALX1:-0.468416357278;NFKB1_REL_RELA:-0.473158318964;GATA6:-0.473938384105;NR1H4:-0.475701180943;MYBL2:-0.495738895434;CUX2:-0.502510203409;HES1:-0.534144581788;AHR_ARNT_ARNT2:-0.547136611474;NHLH1,2:-0.547462525477;AIRE:-0.551360324902;SRF:-0.556000760924;ETS1,2:-0.559212159857;T:-0.577360559771;MZF1:-0.605214843662;FOXP3:-0.60979008914;SOX2:-0.650990050687;TFAP4:-0.651609283418;STAT5{A,B}:-0.65877234523;RUNX1..3:-0.668149139679;SPI1:-0.669106388591;SPIB:-0.674763894969;EN1,2:-0.682016400867;PRDM1:-0.68681246168;SOX17:-0.686886218717;PATZ1:-0.761188765564;HSF1,2:-0.765892158329;PAX5:-0.767463257028;NKX3-1:-0.78472708003;NR3C1:-0.786826699982;AR:-0.788016014508;FOXD3:-0.792870469474;SREBF1,2:-0.795998522077;EVI1:-0.802100140348;NFIX:-0.8490883036;STAT1,3:-0.862857762217;RXR{A,B,G}:-0.870985218546;POU3F1..4:-0.91420404218;NKX2-2,8:-0.914342814053;DMAP1_NCOR{1,2}_SMARC:-0.952960053342;MYFfamily:-0.960252326759;PAX8:-0.961935753526;ATF6:-0.974133126094;FOXA2:-1.01333378699;TGIF1:-1.1003322386;PAX6:-1.11680446664;GCM1,2:-1.2030405576;NFE2L1:-1.23286941196;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.25905776343;RXRA_VDR{dimer}:-1.31948990495;ZNF238:-1.3292264949;SPZ1:-1.39931277481;SMAD1..7,9:-1.41946829285;GATA4:-1.46331672739;HMX1:-1.46488181891;NANOG{mouse}:-1.62506683013;NFATC1..3:-1.63783159655;XBP1:-1.68544342492 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10688-109F4;search_select_hide=table117:FF:10688-109F4 | |||
}} | }} | ||
Latest revision as of 14:33, 3 June 2020
| Name: | glassy cell carcinoma cell line:HOKUG |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11824 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11824
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11824
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.95 |
| 10 | 10 | 0.883 |
| 100 | 100 | 0.748 |
| 101 | 101 | 0.4 |
| 102 | 102 | 0.128 |
| 103 | 103 | 0.298 |
| 104 | 104 | 0.394 |
| 105 | 105 | 0.891 |
| 106 | 106 | 0.219 |
| 107 | 107 | 0.574 |
| 108 | 108 | 0.789 |
| 109 | 109 | 0.0695 |
| 11 | 11 | 0.0798 |
| 110 | 110 | 0.964 |
| 111 | 111 | 0.953 |
| 112 | 112 | 0.267 |
| 113 | 113 | 0.134 |
| 114 | 114 | 0.136 |
| 115 | 115 | 0.979 |
| 116 | 116 | 0.866 |
| 117 | 117 | 0.943 |
| 118 | 118 | 0.469 |
| 119 | 119 | 0.201 |
| 12 | 12 | 0.632 |
| 120 | 120 | 0.994 |
| 121 | 121 | 0.264 |
| 122 | 122 | 0.183 |
| 123 | 123 | 0.618 |
| 124 | 124 | 0.038 |
| 125 | 125 | 0.183 |
| 126 | 126 | 0.906 |
| 127 | 127 | 0.495 |
| 128 | 128 | 0.0915 |
| 129 | 129 | 0.496 |
| 13 | 13 | 0.0457 |
| 130 | 130 | 0.88 |
| 131 | 131 | 0.647 |
| 132 | 132 | 0.603 |
| 133 | 133 | 0.00308 |
| 134 | 134 | 0.758 |
| 135 | 135 | 0.0847 |
| 136 | 136 | 0.00669 |
| 137 | 137 | 0.146 |
| 138 | 138 | 0.429 |
| 139 | 139 | 0.295 |
| 14 | 14 | 0.876 |
| 140 | 140 | 0.687 |
| 141 | 141 | 0.348 |
| 142 | 142 | 0.464 |
| 143 | 143 | 0.00184 |
| 144 | 144 | 0.356 |
| 145 | 145 | 0.218 |
| 146 | 146 | 0.718 |
| 147 | 147 | 0.897 |
| 148 | 148 | 0.118 |
| 149 | 149 | 0.171 |
| 15 | 15 | 0.314 |
| 150 | 150 | 0.733 |
| 151 | 151 | 0.405 |
| 152 | 152 | 0.302 |
| 153 | 153 | 0.314 |
| 154 | 154 | 0.737 |
| 155 | 155 | 0.442 |
| 156 | 156 | 0.488 |
| 157 | 157 | 0.395 |
| 158 | 158 | 0.259 |
| 159 | 159 | 0.746 |
| 16 | 16 | 0.704 |
| 160 | 160 | 0.501 |
| 161 | 161 | 0.694 |
| 162 | 162 | 0.695 |
| 163 | 163 | 0.778 |
| 164 | 164 | 0.599 |
| 165 | 165 | 0.858 |
| 166 | 166 | 0.378 |
| 167 | 167 | 0.977 |
| 168 | 168 | 0.11 |
| 169 | 169 | 0.469 |
| 17 | 17 | 0.907 |
| 18 | 18 | 0.23 |
| 19 | 19 | 0.0803 |
| 2 | 2 | 0.992 |
| 20 | 20 | 0.201 |
| 21 | 21 | 0.703 |
| 22 | 22 | 0.945 |
| 23 | 23 | 0.103 |
| 24 | 24 | 0.975 |
| 25 | 25 | 0.656 |
| 26 | 26 | 0.564 |
| 27 | 27 | 0.408 |
| 28 | 28 | 0.622 |
| 29 | 29 | 0.816 |
| 3 | 3 | 0.256 |
| 30 | 30 | 0.32 |
| 31 | 31 | 0.156 |
| 32 | 32 | 0.017 |
| 33 | 33 | 0.844 |
| 34 | 34 | 0.418 |
| 35 | 35 | 0.0459 |
| 36 | 36 | 0.46 |
| 37 | 37 | 0.328 |
| 38 | 38 | 0.855 |
| 39 | 39 | 0.915 |
| 4 | 4 | 0.648 |
| 40 | 40 | 0.427 |
| 41 | 41 | 0.003 |
| 42 | 42 | 0.488 |
| 43 | 43 | 0.0805 |
| 44 | 44 | 0.496 |
| 45 | 45 | 0.956 |
| 46 | 46 | 0.236 |
| 47 | 47 | 0.379 |
| 48 | 48 | 0.662 |
| 49 | 49 | 0.0867 |
| 5 | 5 | 0.338 |
| 50 | 50 | 0.646 |
| 51 | 51 | 0.341 |
| 52 | 52 | 0.39 |
| 53 | 53 | 0.184 |
| 54 | 54 | 0.794 |
| 55 | 55 | 0.668 |
| 56 | 56 | 0.919 |
| 57 | 57 | 0.88 |
| 58 | 58 | 0.972 |
| 59 | 59 | 0.182 |
| 6 | 6 | 0.555 |
| 60 | 60 | 0.931 |
| 61 | 61 | 0.929 |
| 62 | 62 | 0.36 |
| 63 | 63 | 0.743 |
| 64 | 64 | 0.604 |
| 65 | 65 | 0.239 |
| 66 | 66 | 0.848 |
| 67 | 67 | 0.483 |
| 68 | 68 | 0.209 |
| 69 | 69 | 0.389 |
| 7 | 7 | 0.262 |
| 70 | 70 | 0.795 |
| 71 | 71 | 0.766 |
| 72 | 72 | 0.94 |
| 73 | 73 | 0.406 |
| 74 | 74 | 0.00173 |
| 75 | 75 | 0.661 |
| 76 | 76 | 0.429 |
| 77 | 77 | 0.508 |
| 78 | 78 | 0.089 |
| 79 | 79 | 0.0914 |
| 8 | 8 | 0.842 |
| 80 | 80 | 0.0822 |
| 81 | 81 | 0.0867 |
| 82 | 82 | 0.0205 |
| 83 | 83 | 0.16 |
| 84 | 84 | 0.995 |
| 85 | 85 | 0.0133 |
| 86 | 86 | 0.335 |
| 87 | 87 | 0.109 |
| 88 | 88 | 0.26 |
| 89 | 89 | 0.64 |
| 9 | 9 | 0.319 |
| 90 | 90 | 0.092 |
| 91 | 91 | 0.0779 |
| 92 | 92 | 0.216 |
| 93 | 93 | 0.571 |
| 94 | 94 | 0.0719 |
| 95 | 95 | 0.299 |
| 96 | 96 | 0.0489 |
| 97 | 97 | 0.59 |
| 98 | 98 | 0.197 |
| 99 | 99 | 0.861 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11824
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100297 carcinoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
